2024-01-06T08:31:29,545 Created temporary directory: /tmp/pip-build-tracker-bgfhy551 2024-01-06T08:31:29,546 Initialized build tracking at /tmp/pip-build-tracker-bgfhy551 2024-01-06T08:31:29,546 Created build tracker: /tmp/pip-build-tracker-bgfhy551 2024-01-06T08:31:29,547 Entered build tracker: /tmp/pip-build-tracker-bgfhy551 2024-01-06T08:31:29,547 Created temporary directory: /tmp/pip-wheel-gajl0oye 2024-01-06T08:31:29,551 Created temporary directory: /tmp/pip-ephem-wheel-cache-q5q4z78_ 2024-01-06T08:31:29,573 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-06T08:31:29,576 2 location(s) to search for versions of protfasta: 2024-01-06T08:31:29,576 * https://pypi.org/simple/protfasta/ 2024-01-06T08:31:29,576 * https://www.piwheels.org/simple/protfasta/ 2024-01-06T08:31:29,577 Fetching project page and analyzing links: https://pypi.org/simple/protfasta/ 2024-01-06T08:31:29,578 Getting page https://pypi.org/simple/protfasta/ 2024-01-06T08:31:29,579 Found index url https://pypi.org/simple/ 2024-01-06T08:31:29,790 Fetched page https://pypi.org/simple/protfasta/ as application/vnd.pypi.simple.v1+json 2024-01-06T08:31:29,794 Found link https://files.pythonhosted.org/packages/b6/1d/b12d413f49524f7ea99474c3a78de44e5559c74ea790714817405bd21a70/protfasta-0.1.0.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.7), version: 0.1.0 2024-01-06T08:31:29,795 Found link https://files.pythonhosted.org/packages/af/6b/3e3d39ac1d3dd90466bf3c739bbc4437e7b9ce856b3c05c0619ee2eb4e62/protfasta-0.1.1.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.7), version: 0.1.1 2024-01-06T08:31:29,796 Found link https://files.pythonhosted.org/packages/b0/16/c4e61affed66df7417ed90bfe3973fe6d8259dec4b2e4616b89569b81a52/protfasta-0.1.2.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.7), version: 0.1.2 2024-01-06T08:31:29,797 Found link https://files.pythonhosted.org/packages/c1/e3/643241544561c734493085886f80bc472754df974cd21952df7917a29c2e/protfasta-0.1.3.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.7), version: 0.1.3 2024-01-06T08:31:29,798 Found link https://files.pythonhosted.org/packages/71/de/58732fef89ed8a3a45f4bc850c9127687aac82ac2694195f2ddd3dde3a37/protfasta-0.1.4.1.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.7), version: 0.1.4.1 2024-01-06T08:31:29,798 Found link https://files.pythonhosted.org/packages/3d/1c/868d14020b262a93f9317338a8424bd713cbd3b025e4db30f63b003d1e8d/protfasta-0.1.5.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.7), version: 0.1.5 2024-01-06T08:31:29,799 Found link https://files.pythonhosted.org/packages/af/66/356bfa32c76a02a1fe857dca23909000cfb2888dd9c60fb5b38cf5a118fb/protfasta-0.1.7.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.7), version: 0.1.7 2024-01-06T08:31:29,800 Found link https://files.pythonhosted.org/packages/42/f8/bba7aa837021c5d138491990b6a897704c5738b344495e35a396f4efcd5a/protfasta-0.1.8.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.6), version: 0.1.8 2024-01-06T08:31:29,801 Found link https://files.pythonhosted.org/packages/9f/95/e41dedf5b225dd911eec23d804f336573b5d4df81974ed07ad6223dc01ec/protfasta-0.1.9.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.6), version: 0.1.9 2024-01-06T08:31:29,802 Found link https://files.pythonhosted.org/packages/bc/01/ed9be35e0b9097d6814f9a0021f2cdc8ee15c29d4c77a945cc520cbe5b07/protfasta-0.1.10.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.6), version: 0.1.10 2024-01-06T08:31:29,803 Found link https://files.pythonhosted.org/packages/e9/58/2a9ed49fbf534060ba1d56d6fba982c7d7f700ab9bde09f1b7cfa993de15/protfasta-0.1.11.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.6), version: 0.1.11 2024-01-06T08:31:29,804 Found link https://files.pythonhosted.org/packages/b9/bc/0e7012b9844b098b6b121ac49632f72ac415c2ebc19dbf309a045011d7b9/protfasta-0.1.12.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.6), version: 0.1.12 2024-01-06T08:31:29,805 Found link https://files.pythonhosted.org/packages/ac/02/b8362a0d4c732fe9b07b76046993fa4ed3357d557f576d705c5375d48c48/protfasta-0.1.13.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.7,<3.12.0), version: 0.1.13 2024-01-06T08:31:29,807 Fetching project page and analyzing links: https://www.piwheels.org/simple/protfasta/ 2024-01-06T08:31:29,807 Getting page https://www.piwheels.org/simple/protfasta/ 2024-01-06T08:31:29,808 Found index url https://www.piwheels.org/simple/ 2024-01-06T08:31:29,969 Fetched page https://www.piwheels.org/simple/protfasta/ as text/html 2024-01-06T08:31:29,973 Skipping link: No binaries permitted for protfasta: https://www.piwheels.org/simple/protfasta/protfasta-0.1.12-py3-none-any.whl#sha256=9fb2c41e66622cddaa5f6f431c8777f0504e86ab01317dd6deca1edb3d3a31fd (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.6) 2024-01-06T08:31:29,974 Skipping link: No binaries permitted for protfasta: https://www.piwheels.org/simple/protfasta/protfasta-0.1.11-py3-none-any.whl#sha256=444fc84e257518010b395eda2039d9a3ab7ecf8fa36c643c461de09826d6586a (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.6) 2024-01-06T08:31:29,975 Skipping link: No binaries permitted for protfasta: https://www.piwheels.org/simple/protfasta/protfasta-0.1.10-py3-none-any.whl#sha256=2c81ab5f2689ad23ca52774e952da81069272fcab6d352ab5b5ed2acd62f4fff (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.6) 2024-01-06T08:31:29,975 Skipping link: No binaries permitted for protfasta: https://www.piwheels.org/simple/protfasta/protfasta-0.1.9-py3-none-any.whl#sha256=bbfd31e2c8fa8910d8c6ecdae2a8128c1c7a6bb9370221f070cfe156a5623da6 (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.6) 2024-01-06T08:31:29,975 Skipping link: No binaries permitted for protfasta: https://www.piwheels.org/simple/protfasta/protfasta-0.1.8-py3-none-any.whl#sha256=ac8962d35239e2241ff04ef37a96a1eef001db1b0b7364eb40a1c040c9f68e65 (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.6) 2024-01-06T08:31:29,976 Skipping link: No binaries permitted for protfasta: https://www.piwheels.org/simple/protfasta/protfasta-0.1.7-py3-none-any.whl#sha256=d29649a70d3f3029e6a2bede5e67e63b8fb84f3642786d24b9acdecd89563578 (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.7) 2024-01-06T08:31:29,977 Skipping link: No binaries permitted for protfasta: https://www.piwheels.org/simple/protfasta/protfasta-0.1.5-py3-none-any.whl#sha256=ef65c902eab517ea7a9c3413b5c9d08559b3c027c91474ee1b59598142994760 (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.7) 2024-01-06T08:31:29,977 Skipping link: No binaries permitted for protfasta: https://www.piwheels.org/simple/protfasta/protfasta-0.1.4.1-py3-none-any.whl#sha256=b28ab8b2dd5bc6d7c2408f6dc218dcc84650e0324ff7fa030ce8ce6d7d61f38e (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.7) 2024-01-06T08:31:29,978 Skipping link: No binaries permitted for protfasta: https://www.piwheels.org/simple/protfasta/protfasta-0.1.3-py3-none-any.whl#sha256=91891ee7da8ca221a0422b1d779a30cba120d8ea27c573ad3909984a454ac506 (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.7) 2024-01-06T08:31:29,979 Skipping link: No binaries permitted for protfasta: https://www.piwheels.org/simple/protfasta/protfasta-0.1.2-py3-none-any.whl#sha256=b4d855d9f2f1db5b27d517ccb4fcbd30acfe49eef3e9ad6f1ddfc16fc90147aa (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.7) 2024-01-06T08:31:29,979 Skipping link: No binaries permitted for protfasta: https://www.piwheels.org/simple/protfasta/protfasta-0.1.1-py3-none-any.whl#sha256=7536ef50f573ff13afcaed3281eb90bdcef2fd632d67501908c4d90627619005 (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.7) 2024-01-06T08:31:29,980 Skipping link: No binaries permitted for protfasta: https://www.piwheels.org/simple/protfasta/protfasta-0.1.0-py3-none-any.whl#sha256=ddeb14621185337b263b2e2467f6e991300639f791ba613411bd31e98c70ac01 (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.7) 2024-01-06T08:31:29,980 Skipping link: not a file: https://www.piwheels.org/simple/protfasta/ 2024-01-06T08:31:29,981 Skipping link: not a file: https://pypi.org/simple/protfasta/ 2024-01-06T08:31:30,001 Given no hashes to check 1 links for project 'protfasta': discarding no candidates 2024-01-06T08:31:30,019 Collecting protfasta==0.1.13 2024-01-06T08:31:30,021 Created temporary directory: /tmp/pip-unpack-c69eta3e 2024-01-06T08:31:30,234 Downloading protfasta-0.1.13.tar.gz (142 kB) 2024-01-06T08:31:30,423 Added protfasta==0.1.13 from https://files.pythonhosted.org/packages/ac/02/b8362a0d4c732fe9b07b76046993fa4ed3357d557f576d705c5375d48c48/protfasta-0.1.13.tar.gz to build tracker '/tmp/pip-build-tracker-bgfhy551' 2024-01-06T08:31:30,425 Running setup.py (path:/tmp/pip-wheel-gajl0oye/protfasta_d72ca797e94f4e7680f304e9fba46b36/setup.py) egg_info for package protfasta 2024-01-06T08:31:30,425 Created temporary directory: /tmp/pip-pip-egg-info-a8t84exh 2024-01-06T08:31:30,426 Preparing metadata (setup.py): started 2024-01-06T08:31:30,427 Running command python setup.py egg_info 2024-01-06T08:31:31,452 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:314: InformationOnly: Normalizing 'v0.1.13' to '0.1.13' 2024-01-06T08:31:31,452 self.metadata.version = self._normalize_version(self.metadata.version) 2024-01-06T08:31:31,513 running egg_info 2024-01-06T08:31:31,514 creating /tmp/pip-pip-egg-info-a8t84exh/protfasta.egg-info 2024-01-06T08:31:31,538 writing /tmp/pip-pip-egg-info-a8t84exh/protfasta.egg-info/PKG-INFO 2024-01-06T08:31:31,541 writing dependency_links to /tmp/pip-pip-egg-info-a8t84exh/protfasta.egg-info/dependency_links.txt 2024-01-06T08:31:31,543 writing top-level names to /tmp/pip-pip-egg-info-a8t84exh/protfasta.egg-info/top_level.txt 2024-01-06T08:31:31,545 writing manifest file '/tmp/pip-pip-egg-info-a8t84exh/protfasta.egg-info/SOURCES.txt' 2024-01-06T08:31:31,619 reading manifest file '/tmp/pip-pip-egg-info-a8t84exh/protfasta.egg-info/SOURCES.txt' 2024-01-06T08:31:31,621 reading manifest template 'MANIFEST.in' 2024-01-06T08:31:31,626 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2024-01-06T08:31:31,626 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2024-01-06T08:31:31,627 warning: no previously-included files matching '*.so' found anywhere in distribution 2024-01-06T08:31:31,628 adding license file 'LICENSE' 2024-01-06T08:31:31,629 writing manifest file '/tmp/pip-pip-egg-info-a8t84exh/protfasta.egg-info/SOURCES.txt' 2024-01-06T08:31:31,738 Preparing metadata (setup.py): finished with status 'done' 2024-01-06T08:31:31,741 Source in /tmp/pip-wheel-gajl0oye/protfasta_d72ca797e94f4e7680f304e9fba46b36 has version 0.1.13, which satisfies requirement protfasta==0.1.13 from https://files.pythonhosted.org/packages/ac/02/b8362a0d4c732fe9b07b76046993fa4ed3357d557f576d705c5375d48c48/protfasta-0.1.13.tar.gz 2024-01-06T08:31:31,742 Removed protfasta==0.1.13 from https://files.pythonhosted.org/packages/ac/02/b8362a0d4c732fe9b07b76046993fa4ed3357d557f576d705c5375d48c48/protfasta-0.1.13.tar.gz from build tracker '/tmp/pip-build-tracker-bgfhy551' 2024-01-06T08:31:31,748 Created temporary directory: /tmp/pip-unpack-z4xg5909 2024-01-06T08:31:31,749 Created temporary directory: /tmp/pip-unpack-ipg1mpm6 2024-01-06T08:31:31,751 Building wheels for collected packages: protfasta 2024-01-06T08:31:31,755 Created temporary directory: /tmp/pip-wheel-0md9x4i6 2024-01-06T08:31:31,756 Building wheel for protfasta (setup.py): started 2024-01-06T08:31:31,757 Destination directory: /tmp/pip-wheel-0md9x4i6 2024-01-06T08:31:31,758 Running command python setup.py bdist_wheel 2024-01-06T08:31:32,773 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:314: InformationOnly: Normalizing 'v0.1.13' to '0.1.13' 2024-01-06T08:31:32,773 self.metadata.version = self._normalize_version(self.metadata.version) 2024-01-06T08:31:32,828 running bdist_wheel 2024-01-06T08:31:32,925 running build 2024-01-06T08:31:32,925 running build_py 2024-01-06T08:31:32,931 creating build 2024-01-06T08:31:32,931 creating build/lib 2024-01-06T08:31:32,932 creating build/lib/protfasta 2024-01-06T08:31:32,933 copying protfasta/io.py -> build/lib/protfasta 2024-01-06T08:31:32,936 copying protfasta/__init__.py -> build/lib/protfasta 2024-01-06T08:31:32,938 copying protfasta/utilities.py -> build/lib/protfasta 2024-01-06T08:31:32,940 copying protfasta/_version.py -> build/lib/protfasta 2024-01-06T08:31:32,942 copying protfasta/_configs.py -> build/lib/protfasta 2024-01-06T08:31:32,944 copying protfasta/protfasta_exceptions.py -> build/lib/protfasta 2024-01-06T08:31:32,946 copying protfasta/protfasta.py -> build/lib/protfasta 2024-01-06T08:31:32,948 creating build/lib/protfasta/tests 2024-01-06T08:31:32,949 copying protfasta/tests/__init__.py -> build/lib/protfasta/tests 2024-01-06T08:31:32,951 copying protfasta/tests/test_protfasta.py -> build/lib/protfasta/tests 2024-01-06T08:31:32,953 copying protfasta/tests/conftest.py -> build/lib/protfasta/tests 2024-01-06T08:31:32,954 running egg_info 2024-01-06T08:31:33,011 writing protfasta.egg-info/PKG-INFO 2024-01-06T08:31:33,014 writing dependency_links to protfasta.egg-info/dependency_links.txt 2024-01-06T08:31:33,015 writing top-level names to protfasta.egg-info/top_level.txt 2024-01-06T08:31:33,043 reading manifest file 'protfasta.egg-info/SOURCES.txt' 2024-01-06T08:31:33,046 reading manifest template 'MANIFEST.in' 2024-01-06T08:31:33,050 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2024-01-06T08:31:33,051 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2024-01-06T08:31:33,052 warning: no previously-included files matching '*.so' found anywhere in distribution 2024-01-06T08:31:33,052 adding license file 'LICENSE' 2024-01-06T08:31:33,055 writing manifest file 'protfasta.egg-info/SOURCES.txt' 2024-01-06T08:31:33,058 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'protfasta.data' is absent from the `packages` configuration. 2024-01-06T08:31:33,059 !! 2024-01-06T08:31:33,060 ******************************************************************************** 2024-01-06T08:31:33,060 ############################ 2024-01-06T08:31:33,061 # Package would be ignored # 2024-01-06T08:31:33,062 ############################ 2024-01-06T08:31:33,062 Python recognizes 'protfasta.data' as an importable package[^1], 2024-01-06T08:31:33,063 but it is absent from setuptools' `packages` configuration. 2024-01-06T08:31:33,064 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-06T08:31:33,064 package, please make sure that 'protfasta.data' is explicitly added 2024-01-06T08:31:33,065 to the `packages` configuration field. 2024-01-06T08:31:33,066 Alternatively, you can also rely on setuptools' discovery methods 2024-01-06T08:31:33,067 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-06T08:31:33,067 instead of `find_packages(...)`/`find:`). 2024-01-06T08:31:33,071 You can read more about "package discovery" on setuptools documentation page: 2024-01-06T08:31:33,072 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-06T08:31:33,073 If you don't want 'protfasta.data' to be distributed and are 2024-01-06T08:31:33,074 already explicitly excluding 'protfasta.data' via 2024-01-06T08:31:33,074 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-06T08:31:33,075 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-06T08:31:33,075 combination with a more fine grained `package-data` configuration. 2024-01-06T08:31:33,077 You can read more about "package data files" on setuptools documentation page: 2024-01-06T08:31:33,078 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-06T08:31:33,079 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-06T08:31:33,079 even if it does not contain any `.py` files. 2024-01-06T08:31:33,080 On the other hand, currently there is no concept of package data 2024-01-06T08:31:33,080 directory, all directories are treated like packages. 2024-01-06T08:31:33,081 ******************************************************************************** 2024-01-06T08:31:33,082 !! 2024-01-06T08:31:33,082 check.warn(importable) 2024-01-06T08:31:33,083 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'protfasta.data.test_data' is absent from the `packages` configuration. 2024-01-06T08:31:33,083 !! 2024-01-06T08:31:33,084 ******************************************************************************** 2024-01-06T08:31:33,085 ############################ 2024-01-06T08:31:33,085 # Package would be ignored # 2024-01-06T08:31:33,086 ############################ 2024-01-06T08:31:33,086 Python recognizes 'protfasta.data.test_data' as an importable package[^1], 2024-01-06T08:31:33,087 but it is absent from setuptools' `packages` configuration. 2024-01-06T08:31:33,088 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-06T08:31:33,089 package, please make sure that 'protfasta.data.test_data' is explicitly added 2024-01-06T08:31:33,089 to the `packages` configuration field. 2024-01-06T08:31:33,090 Alternatively, you can also rely on setuptools' discovery methods 2024-01-06T08:31:33,091 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-06T08:31:33,091 instead of `find_packages(...)`/`find:`). 2024-01-06T08:31:33,092 You can read more about "package discovery" on setuptools documentation page: 2024-01-06T08:31:33,093 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-06T08:31:33,094 If you don't want 'protfasta.data.test_data' to be distributed and are 2024-01-06T08:31:33,095 already explicitly excluding 'protfasta.data.test_data' via 2024-01-06T08:31:33,095 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-06T08:31:33,096 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-06T08:31:33,097 combination with a more fine grained `package-data` configuration. 2024-01-06T08:31:33,098 You can read more about "package data files" on setuptools documentation page: 2024-01-06T08:31:33,099 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-06T08:31:33,101 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-06T08:31:33,101 even if it does not contain any `.py` files. 2024-01-06T08:31:33,102 On the other hand, currently there is no concept of package data 2024-01-06T08:31:33,102 directory, all directories are treated like packages. 2024-01-06T08:31:33,103 ******************************************************************************** 2024-01-06T08:31:33,104 !! 2024-01-06T08:31:33,104 check.warn(importable) 2024-01-06T08:31:33,105 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'protfasta.tests.outdata' is absent from the `packages` configuration. 2024-01-06T08:31:33,106 !! 2024-01-06T08:31:33,107 ******************************************************************************** 2024-01-06T08:31:33,108 ############################ 2024-01-06T08:31:33,108 # Package would be ignored # 2024-01-06T08:31:33,109 ############################ 2024-01-06T08:31:33,110 Python recognizes 'protfasta.tests.outdata' as an importable package[^1], 2024-01-06T08:31:33,110 but it is absent from setuptools' `packages` configuration. 2024-01-06T08:31:33,111 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-06T08:31:33,111 package, please make sure that 'protfasta.tests.outdata' is explicitly added 2024-01-06T08:31:33,112 to the `packages` configuration field. 2024-01-06T08:31:33,114 Alternatively, you can also rely on setuptools' discovery methods 2024-01-06T08:31:33,114 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-06T08:31:33,115 instead of `find_packages(...)`/`find:`). 2024-01-06T08:31:33,116 You can read more about "package discovery" on setuptools documentation page: 2024-01-06T08:31:33,118 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-06T08:31:33,119 If you don't want 'protfasta.tests.outdata' to be distributed and are 2024-01-06T08:31:33,119 already explicitly excluding 'protfasta.tests.outdata' via 2024-01-06T08:31:33,120 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-06T08:31:33,121 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-06T08:31:33,122 combination with a more fine grained `package-data` configuration. 2024-01-06T08:31:33,123 You can read more about "package data files" on setuptools documentation page: 2024-01-06T08:31:33,124 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-06T08:31:33,126 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-06T08:31:33,126 even if it does not contain any `.py` files. 2024-01-06T08:31:33,127 On the other hand, currently there is no concept of package data 2024-01-06T08:31:33,128 directory, all directories are treated like packages. 2024-01-06T08:31:33,128 ******************************************************************************** 2024-01-06T08:31:33,129 !! 2024-01-06T08:31:33,130 check.warn(importable) 2024-01-06T08:31:33,131 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'protfasta.tests.pfasta_test' is absent from the `packages` configuration. 2024-01-06T08:31:33,131 !! 2024-01-06T08:31:33,132 ******************************************************************************** 2024-01-06T08:31:33,133 ############################ 2024-01-06T08:31:33,134 # Package would be ignored # 2024-01-06T08:31:33,134 ############################ 2024-01-06T08:31:33,135 Python recognizes 'protfasta.tests.pfasta_test' as an importable package[^1], 2024-01-06T08:31:33,135 but it is absent from setuptools' `packages` configuration. 2024-01-06T08:31:33,136 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-06T08:31:33,137 package, please make sure that 'protfasta.tests.pfasta_test' is explicitly added 2024-01-06T08:31:33,138 to the `packages` configuration field. 2024-01-06T08:31:33,139 Alternatively, you can also rely on setuptools' discovery methods 2024-01-06T08:31:33,139 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-06T08:31:33,140 instead of `find_packages(...)`/`find:`). 2024-01-06T08:31:33,141 You can read more about "package discovery" on setuptools documentation page: 2024-01-06T08:31:33,142 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-06T08:31:33,143 If you don't want 'protfasta.tests.pfasta_test' to be distributed and are 2024-01-06T08:31:33,144 already explicitly excluding 'protfasta.tests.pfasta_test' via 2024-01-06T08:31:33,145 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-06T08:31:33,145 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-06T08:31:33,146 combination with a more fine grained `package-data` configuration. 2024-01-06T08:31:33,147 You can read more about "package data files" on setuptools documentation page: 2024-01-06T08:31:33,148 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-06T08:31:33,150 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-06T08:31:33,150 even if it does not contain any `.py` files. 2024-01-06T08:31:33,151 On the other hand, currently there is no concept of package data 2024-01-06T08:31:33,151 directory, all directories are treated like packages. 2024-01-06T08:31:33,151 ******************************************************************************** 2024-01-06T08:31:33,152 !! 2024-01-06T08:31:33,153 check.warn(importable) 2024-01-06T08:31:33,154 creating build/lib/protfasta/data 2024-01-06T08:31:33,154 copying protfasta/data/README.md -> build/lib/protfasta/data 2024-01-06T08:31:33,155 copying protfasta/data/look_and_say.dat -> build/lib/protfasta/data 2024-01-06T08:31:33,155 creating build/lib/protfasta/data/test_data 2024-01-06T08:31:33,156 copying protfasta/data/test_data/aligned_seq_all_valid.fasta -> build/lib/protfasta/data/test_data 2024-01-06T08:31:33,156 copying protfasta/data/test_data/aligned_seq_all_valid_convertable.fasta -> build/lib/protfasta/data/test_data 2024-01-06T08:31:33,157 copying protfasta/data/test_data/aligned_seq_all_valid_unconvertable.fasta -> build/lib/protfasta/data/test_data 2024-01-06T08:31:33,157 copying protfasta/data/test_data/fixable_invalid.fasta -> build/lib/protfasta/data/test_data 2024-01-06T08:31:33,158 copying protfasta/data/test_data/test_data_with_bad_chars.fa -> build/lib/protfasta/data/test_data 2024-01-06T08:31:33,158 copying protfasta/data/test_data/test_data_with_nonstandard_chars.fa -> build/lib/protfasta/data/test_data 2024-01-06T08:31:33,159 copying protfasta/data/test_data/testset_1.fasta -> build/lib/protfasta/data/test_data 2024-01-06T08:31:33,160 copying protfasta/data/test_data/testset_duplicate.fasta -> build/lib/protfasta/data/test_data 2024-01-06T08:31:33,160 copying protfasta/data/test_data/testset_duplicate_seqs.fasta -> build/lib/protfasta/data/test_data 2024-01-06T08:31:33,160 copying protfasta/data/test_data/unfixable_invalid.fasta -> build/lib/protfasta/data/test_data 2024-01-06T08:31:33,161 creating build/lib/protfasta/tests/outdata 2024-01-06T08:31:33,162 copying protfasta/tests/outdata/readme.md -> build/lib/protfasta/tests/outdata 2024-01-06T08:31:33,162 copying protfasta/tests/outdata/test_out_1.fasta -> build/lib/protfasta/tests/outdata 2024-01-06T08:31:33,163 copying protfasta/tests/outdata/test_out_2.fasta -> build/lib/protfasta/tests/outdata 2024-01-06T08:31:33,163 creating build/lib/protfasta/tests/pfasta_test 2024-01-06T08:31:33,164 copying protfasta/tests/pfasta_test/100_seqs_with_allvalid.fasta -> build/lib/protfasta/tests/pfasta_test 2024-01-06T08:31:33,164 copying protfasta/tests/pfasta_test/100_seqs_with_invalid.fasta -> build/lib/protfasta/tests/pfasta_test 2024-01-06T08:31:33,165 copying protfasta/tests/pfasta_test/input_test.fasta -> build/lib/protfasta/tests/pfasta_test 2024-01-06T08:31:33,166 copying protfasta/tests/pfasta_test/run_coverage_tests.sh -> build/lib/protfasta/tests/pfasta_test 2024-01-06T08:31:33,166 UPDATING build/lib/protfasta/_version.py 2024-01-06T08:31:33,167 set build/lib/protfasta/_version.py to 'v0.1.13' 2024-01-06T08:31:33,167 running build_scripts 2024-01-06T08:31:33,168 creating build/scripts-3.11 2024-01-06T08:31:33,168 copying and adjusting scripts/pfasta -> build/scripts-3.11 2024-01-06T08:31:33,169 changing mode of build/scripts-3.11/pfasta from 644 to 755 2024-01-06T08:31:33,170 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-01-06T08:31:33,170 !! 2024-01-06T08:31:33,171 ******************************************************************************** 2024-01-06T08:31:33,172 Please avoid running ``setup.py`` directly. 2024-01-06T08:31:33,172 Instead, use pypa/build, pypa/installer or other 2024-01-06T08:31:33,173 standards-based tools. 2024-01-06T08:31:33,173 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-01-06T08:31:33,174 ******************************************************************************** 2024-01-06T08:31:33,175 !! 2024-01-06T08:31:33,175 self.initialize_options() 2024-01-06T08:31:33,191 installing to build/bdist.linux-armv7l/wheel 2024-01-06T08:31:33,192 running install 2024-01-06T08:31:33,216 running install_lib 2024-01-06T08:31:33,240 creating build/bdist.linux-armv7l 2024-01-06T08:31:33,241 creating build/bdist.linux-armv7l/wheel 2024-01-06T08:31:33,242 creating build/bdist.linux-armv7l/wheel/protfasta 2024-01-06T08:31:33,244 creating build/bdist.linux-armv7l/wheel/protfasta/tests 2024-01-06T08:31:33,246 creating build/bdist.linux-armv7l/wheel/protfasta/tests/pfasta_test 2024-01-06T08:31:33,247 copying build/lib/protfasta/tests/pfasta_test/100_seqs_with_allvalid.fasta -> build/bdist.linux-armv7l/wheel/protfasta/tests/pfasta_test 2024-01-06T08:31:33,250 copying build/lib/protfasta/tests/pfasta_test/run_coverage_tests.sh -> build/bdist.linux-armv7l/wheel/protfasta/tests/pfasta_test 2024-01-06T08:31:33,252 copying build/lib/protfasta/tests/pfasta_test/input_test.fasta -> build/bdist.linux-armv7l/wheel/protfasta/tests/pfasta_test 2024-01-06T08:31:33,254 copying build/lib/protfasta/tests/pfasta_test/100_seqs_with_invalid.fasta -> build/bdist.linux-armv7l/wheel/protfasta/tests/pfasta_test 2024-01-06T08:31:33,258 copying build/lib/protfasta/tests/__init__.py -> build/bdist.linux-armv7l/wheel/protfasta/tests 2024-01-06T08:31:33,260 copying build/lib/protfasta/tests/test_protfasta.py -> build/bdist.linux-armv7l/wheel/protfasta/tests 2024-01-06T08:31:33,263 creating build/bdist.linux-armv7l/wheel/protfasta/tests/outdata 2024-01-06T08:31:33,264 copying build/lib/protfasta/tests/outdata/readme.md -> build/bdist.linux-armv7l/wheel/protfasta/tests/outdata 2024-01-06T08:31:33,266 copying build/lib/protfasta/tests/outdata/test_out_1.fasta -> build/bdist.linux-armv7l/wheel/protfasta/tests/outdata 2024-01-06T08:31:33,268 copying build/lib/protfasta/tests/outdata/test_out_2.fasta -> build/bdist.linux-armv7l/wheel/protfasta/tests/outdata 2024-01-06T08:31:33,271 copying build/lib/protfasta/tests/conftest.py -> build/bdist.linux-armv7l/wheel/protfasta/tests 2024-01-06T08:31:33,273 copying build/lib/protfasta/io.py -> build/bdist.linux-armv7l/wheel/protfasta 2024-01-06T08:31:33,276 creating build/bdist.linux-armv7l/wheel/protfasta/data 2024-01-06T08:31:33,278 creating build/bdist.linux-armv7l/wheel/protfasta/data/test_data 2024-01-06T08:31:33,279 copying build/lib/protfasta/data/test_data/testset_duplicate.fasta -> build/bdist.linux-armv7l/wheel/protfasta/data/test_data 2024-01-06T08:31:33,281 copying build/lib/protfasta/data/test_data/testset_1.fasta -> build/bdist.linux-armv7l/wheel/protfasta/data/test_data 2024-01-06T08:31:33,284 copying build/lib/protfasta/data/test_data/testset_duplicate_seqs.fasta -> build/bdist.linux-armv7l/wheel/protfasta/data/test_data 2024-01-06T08:31:33,287 copying build/lib/protfasta/data/test_data/test_data_with_bad_chars.fa -> build/bdist.linux-armv7l/wheel/protfasta/data/test_data 2024-01-06T08:31:33,289 copying build/lib/protfasta/data/test_data/aligned_seq_all_valid_unconvertable.fasta -> build/bdist.linux-armv7l/wheel/protfasta/data/test_data 2024-01-06T08:31:33,291 copying build/lib/protfasta/data/test_data/aligned_seq_all_valid.fasta -> build/bdist.linux-armv7l/wheel/protfasta/data/test_data 2024-01-06T08:31:33,293 copying build/lib/protfasta/data/test_data/fixable_invalid.fasta -> build/bdist.linux-armv7l/wheel/protfasta/data/test_data 2024-01-06T08:31:33,295 copying build/lib/protfasta/data/test_data/aligned_seq_all_valid_convertable.fasta -> build/bdist.linux-armv7l/wheel/protfasta/data/test_data 2024-01-06T08:31:33,297 copying build/lib/protfasta/data/test_data/unfixable_invalid.fasta -> build/bdist.linux-armv7l/wheel/protfasta/data/test_data 2024-01-06T08:31:33,299 copying build/lib/protfasta/data/test_data/test_data_with_nonstandard_chars.fa -> build/bdist.linux-armv7l/wheel/protfasta/data/test_data 2024-01-06T08:31:33,302 copying build/lib/protfasta/data/look_and_say.dat -> build/bdist.linux-armv7l/wheel/protfasta/data 2024-01-06T08:31:33,304 copying build/lib/protfasta/data/README.md -> build/bdist.linux-armv7l/wheel/protfasta/data 2024-01-06T08:31:33,306 copying build/lib/protfasta/__init__.py -> build/bdist.linux-armv7l/wheel/protfasta 2024-01-06T08:31:33,309 copying build/lib/protfasta/utilities.py -> build/bdist.linux-armv7l/wheel/protfasta 2024-01-06T08:31:33,312 copying build/lib/protfasta/_version.py -> build/bdist.linux-armv7l/wheel/protfasta 2024-01-06T08:31:33,314 copying build/lib/protfasta/_configs.py -> build/bdist.linux-armv7l/wheel/protfasta 2024-01-06T08:31:33,316 copying build/lib/protfasta/protfasta_exceptions.py -> build/bdist.linux-armv7l/wheel/protfasta 2024-01-06T08:31:33,318 copying build/lib/protfasta/protfasta.py -> build/bdist.linux-armv7l/wheel/protfasta 2024-01-06T08:31:33,320 running install_egg_info 2024-01-06T08:31:33,351 Copying protfasta.egg-info to build/bdist.linux-armv7l/wheel/protfasta-0.1.13-py3.11.egg-info 2024-01-06T08:31:33,360 running install_scripts 2024-01-06T08:31:33,361 creating build/bdist.linux-armv7l/wheel/protfasta-0.1.13.data 2024-01-06T08:31:33,361 creating build/bdist.linux-armv7l/wheel/protfasta-0.1.13.data/scripts 2024-01-06T08:31:33,363 copying build/scripts-3.11/pfasta -> build/bdist.linux-armv7l/wheel/protfasta-0.1.13.data/scripts 2024-01-06T08:31:33,365 changing mode of build/bdist.linux-armv7l/wheel/protfasta-0.1.13.data/scripts/pfasta to 755 2024-01-06T08:31:33,378 creating build/bdist.linux-armv7l/wheel/protfasta-0.1.13.dist-info/WHEEL 2024-01-06T08:31:33,381 creating '/tmp/pip-wheel-0md9x4i6/protfasta-0.1.13-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-01-06T08:31:33,385 adding 'protfasta/__init__.py' 2024-01-06T08:31:33,386 adding 'protfasta/_configs.py' 2024-01-06T08:31:33,388 adding 'protfasta/_version.py' 2024-01-06T08:31:33,390 adding 'protfasta/io.py' 2024-01-06T08:31:33,391 adding 'protfasta/protfasta.py' 2024-01-06T08:31:33,393 adding 'protfasta/protfasta_exceptions.py' 2024-01-06T08:31:33,395 adding 'protfasta/utilities.py' 2024-01-06T08:31:33,397 adding 'protfasta/data/README.md' 2024-01-06T08:31:33,398 adding 'protfasta/data/look_and_say.dat' 2024-01-06T08:31:33,399 adding 'protfasta/data/test_data/aligned_seq_all_valid.fasta' 2024-01-06T08:31:33,401 adding 'protfasta/data/test_data/aligned_seq_all_valid_convertable.fasta' 2024-01-06T08:31:33,402 adding 'protfasta/data/test_data/aligned_seq_all_valid_unconvertable.fasta' 2024-01-06T08:31:33,403 adding 'protfasta/data/test_data/fixable_invalid.fasta' 2024-01-06T08:31:33,405 adding 'protfasta/data/test_data/test_data_with_bad_chars.fa' 2024-01-06T08:31:33,406 adding 'protfasta/data/test_data/test_data_with_nonstandard_chars.fa' 2024-01-06T08:31:33,408 adding 'protfasta/data/test_data/testset_1.fasta' 2024-01-06T08:31:33,409 adding 'protfasta/data/test_data/testset_duplicate.fasta' 2024-01-06T08:31:33,410 adding 'protfasta/data/test_data/testset_duplicate_seqs.fasta' 2024-01-06T08:31:33,412 adding 'protfasta/data/test_data/unfixable_invalid.fasta' 2024-01-06T08:31:33,414 adding 'protfasta/tests/__init__.py' 2024-01-06T08:31:33,416 adding 'protfasta/tests/conftest.py' 2024-01-06T08:31:33,418 adding 'protfasta/tests/test_protfasta.py' 2024-01-06T08:31:33,420 adding 'protfasta/tests/outdata/readme.md' 2024-01-06T08:31:33,421 adding 'protfasta/tests/outdata/test_out_1.fasta' 2024-01-06T08:31:33,423 adding 'protfasta/tests/outdata/test_out_2.fasta' 2024-01-06T08:31:33,432 adding 'protfasta/tests/pfasta_test/100_seqs_with_allvalid.fasta' 2024-01-06T08:31:33,441 adding 'protfasta/tests/pfasta_test/100_seqs_with_invalid.fasta' 2024-01-06T08:31:33,444 adding 'protfasta/tests/pfasta_test/input_test.fasta' 2024-01-06T08:31:33,445 adding 'protfasta/tests/pfasta_test/run_coverage_tests.sh' 2024-01-06T08:31:33,448 adding 'protfasta-0.1.13.data/scripts/pfasta' 2024-01-06T08:31:33,450 adding 'protfasta-0.1.13.dist-info/LICENSE' 2024-01-06T08:31:33,451 adding 'protfasta-0.1.13.dist-info/METADATA' 2024-01-06T08:31:33,452 adding 'protfasta-0.1.13.dist-info/WHEEL' 2024-01-06T08:31:33,453 adding 'protfasta-0.1.13.dist-info/top_level.txt' 2024-01-06T08:31:33,454 adding 'protfasta-0.1.13.dist-info/RECORD' 2024-01-06T08:31:33,458 removing build/bdist.linux-armv7l/wheel 2024-01-06T08:31:33,580 Building wheel for protfasta (setup.py): finished with status 'done' 2024-01-06T08:31:33,584 Created wheel for protfasta: filename=protfasta-0.1.13-py3-none-any.whl size=120290 sha256=0590857528201752af215a80ec43cf35b6d0da9d7ff41f5182446a7d32ac8589 2024-01-06T08:31:33,585 Stored in directory: /tmp/pip-ephem-wheel-cache-q5q4z78_/wheels/76/b3/15/4ebe959572658ee6d3052475f8536deba3f9d7ec173459e467 2024-01-06T08:31:33,595 Successfully built protfasta 2024-01-06T08:31:33,601 Removed build tracker: '/tmp/pip-build-tracker-bgfhy551'