2024-01-06T11:30:49,827 Created temporary directory: /tmp/pip-build-tracker-s8j4idk1 2024-01-06T11:30:49,828 Initialized build tracking at /tmp/pip-build-tracker-s8j4idk1 2024-01-06T11:30:49,829 Created build tracker: /tmp/pip-build-tracker-s8j4idk1 2024-01-06T11:30:49,829 Entered build tracker: /tmp/pip-build-tracker-s8j4idk1 2024-01-06T11:30:49,830 Created temporary directory: /tmp/pip-wheel-cuh_r4rg 2024-01-06T11:30:49,833 Created temporary directory: /tmp/pip-ephem-wheel-cache-p6i88n7i 2024-01-06T11:30:49,855 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-06T11:30:49,859 2 location(s) to search for versions of openpathsampling: 2024-01-06T11:30:49,859 * https://pypi.org/simple/openpathsampling/ 2024-01-06T11:30:49,859 * https://www.piwheels.org/simple/openpathsampling/ 2024-01-06T11:30:49,860 Fetching project page and analyzing links: https://pypi.org/simple/openpathsampling/ 2024-01-06T11:30:49,860 Getting page https://pypi.org/simple/openpathsampling/ 2024-01-06T11:30:49,862 Found index url https://pypi.org/simple/ 2024-01-06T11:30:50,134 Fetched page https://pypi.org/simple/openpathsampling/ as application/vnd.pypi.simple.v1+json 2024-01-06T11:30:50,139 Skipping link: No binaries permitted for openpathsampling: https://files.pythonhosted.org/packages/02/01/b5365c2ef321ec80bc52ff88892fe024e19f6fa0316ba901ba078ce01c8a/openpathsampling-1.1.0-py2.py3-none-any.whl (from https://pypi.org/simple/openpathsampling/) 2024-01-06T11:30:50,140 Found link https://files.pythonhosted.org/packages/58/a3/0d2d19010faa28544c34b8182ef45612850cd9c3f8c83b65f0f26bdf7c91/openpathsampling-1.1.0.tar.gz (from https://pypi.org/simple/openpathsampling/), version: 1.1.0 2024-01-06T11:30:50,140 Skipping link: No binaries permitted for openpathsampling: https://files.pythonhosted.org/packages/28/73/3642686e841c49b386e63e85abbfc64910be20dbd45dcae0495011d7bf1f/openpathsampling-1.2.0-py2.py3-none-any.whl (from https://pypi.org/simple/openpathsampling/) 2024-01-06T11:30:50,141 Found link https://files.pythonhosted.org/packages/88/59/12b6dfa985ed3ca011a031daa2858d2d8cc2b34687c887a44fb7c871613c/openpathsampling-1.2.0.tar.gz (from https://pypi.org/simple/openpathsampling/), version: 1.2.0 2024-01-06T11:30:50,141 Skipping link: No binaries permitted for openpathsampling: https://files.pythonhosted.org/packages/9c/bc/5d3ccbb234f17bde74cbe018acf849aa3bfe37740e0ab3c02c3c9111160e/openpathsampling-1.3.0-py2.py3-none-any.whl (from https://pypi.org/simple/openpathsampling/) 2024-01-06T11:30:50,142 Found link https://files.pythonhosted.org/packages/ac/ae/ad93f6d3279e6386f63f2d50b4365b8ebb1e91000838635ced2973efe6a0/openpathsampling-1.3.0.tar.gz (from https://pypi.org/simple/openpathsampling/), version: 1.3.0 2024-01-06T11:30:50,143 Skipping link: No binaries permitted for openpathsampling: https://files.pythonhosted.org/packages/9d/a1/31f6bd075512b8fd77d6e479f983ce924e0af8e2ebabff9a88f693831391/openpathsampling-1.4.0-py2.py3-none-any.whl (from https://pypi.org/simple/openpathsampling/) 2024-01-06T11:30:50,143 Found link https://files.pythonhosted.org/packages/3c/ec/965164f9460776f21bb60dfa464ce04afa52c921ba1c80e1125d6a8a727d/openpathsampling-1.4.0.tar.gz (from https://pypi.org/simple/openpathsampling/), version: 1.4.0 2024-01-06T11:30:50,144 Skipping link: No binaries permitted for openpathsampling: https://files.pythonhosted.org/packages/f1/56/98b67d8bc3a2d48133a38106ec18652a05d3bb475bc666f4667dd052c509/openpathsampling-1.4.1-py2.py3-none-any.whl (from https://pypi.org/simple/openpathsampling/) 2024-01-06T11:30:50,145 Found link https://files.pythonhosted.org/packages/49/97/94db22f357866f716c90426cc83372f0e55d9a7443b05f7832ee7799b3a2/openpathsampling-1.4.1.tar.gz (from https://pypi.org/simple/openpathsampling/), version: 1.4.1 2024-01-06T11:30:50,145 Skipping link: No binaries permitted for openpathsampling: https://files.pythonhosted.org/packages/f7/6c/3b86e36ba8486b5223cbf3107d3f0c46a053ecc5c235e98e01f3907d2556/openpathsampling-1.4.2-py2.py3-none-any.whl (from https://pypi.org/simple/openpathsampling/) 2024-01-06T11:30:50,146 Found link https://files.pythonhosted.org/packages/e1/25/0018a24c030b7690299d81901c8eac84bfe357fdee352a3e16373f1a75ff/openpathsampling-1.4.2.tar.gz (from https://pypi.org/simple/openpathsampling/), version: 1.4.2 2024-01-06T11:30:50,147 Skipping link: No binaries permitted for openpathsampling: https://files.pythonhosted.org/packages/9f/d8/9a2478433b597bf6097fd557d5475fb604b9ea7976bcef667ed835cc909f/openpathsampling-1.5.0-py2.py3-none-any.whl (from https://pypi.org/simple/openpathsampling/) 2024-01-06T11:30:50,148 Found link https://files.pythonhosted.org/packages/b4/35/5136b5789163d2f2b6404b1b87fa0cbab52f03526b180f784c1615ec5b1b/openpathsampling-1.5.0.tar.gz (from https://pypi.org/simple/openpathsampling/), version: 1.5.0 2024-01-06T11:30:50,148 Skipping link: No binaries permitted for openpathsampling: https://files.pythonhosted.org/packages/7b/d9/2af8b706afd4e2f659c276893f4542a6edce57a2e69e99adb9b0d1e74796/openpathsampling-1.5.1-py2.py3-none-any.whl (from https://pypi.org/simple/openpathsampling/) 2024-01-06T11:30:50,149 Found link https://files.pythonhosted.org/packages/2a/45/d6ee86f851d913e8cf6498cf8adcf3cca700ba6c1df8df34512df521189a/openpathsampling-1.5.1.tar.gz (from https://pypi.org/simple/openpathsampling/), version: 1.5.1 2024-01-06T11:30:50,149 Skipping link: No binaries permitted for openpathsampling: https://files.pythonhosted.org/packages/8c/36/f1277f8c03c2b7d9de0d9aa2e6e936330d40ee3b585d906e860d6c9e4949/openpathsampling-1.5.2-py2.py3-none-any.whl (from https://pypi.org/simple/openpathsampling/) 2024-01-06T11:30:50,150 Found link https://files.pythonhosted.org/packages/02/4e/339ec9bc8677dc79021b3db42144a4f7336b2894a6380f23f580ccacd992/openpathsampling-1.5.2.tar.gz (from https://pypi.org/simple/openpathsampling/), version: 1.5.2 2024-01-06T11:30:50,150 Skipping link: No binaries permitted for openpathsampling: https://files.pythonhosted.org/packages/a4/b1/3399d16becec9af55b6a6638b4ca407140deee6b626164a2015fe8d660c1/openpathsampling-1.6.0-py2.py3-none-any.whl (from https://pypi.org/simple/openpathsampling/) (requires-python:<3.12,>3.7) 2024-01-06T11:30:50,151 Found link https://files.pythonhosted.org/packages/e0/8b/a8c16cf82c04153816aec79ac9c6867513a2affa473dec398d4ce021cd50/openpathsampling-1.6.0.tar.gz (from https://pypi.org/simple/openpathsampling/) (requires-python:<3.12,>3.7), version: 1.6.0 2024-01-06T11:30:50,152 Fetching project page and analyzing links: https://www.piwheels.org/simple/openpathsampling/ 2024-01-06T11:30:50,153 Getting page https://www.piwheels.org/simple/openpathsampling/ 2024-01-06T11:30:50,154 Found index url https://www.piwheels.org/simple/ 2024-01-06T11:30:50,338 Fetched page https://www.piwheels.org/simple/openpathsampling/ as text/html 2024-01-06T11:30:50,342 Skipping link: No binaries permitted for openpathsampling: https://www.piwheels.org/simple/openpathsampling/openpathsampling-1.5.2-py2.py3-none-any.whl#sha256=fc22eb29a97a8715d1df829d6cf7b2732ed6c694fef34a0bb1cf51c6275bca76 (from https://www.piwheels.org/simple/openpathsampling/) 2024-01-06T11:30:50,343 Skipping link: No binaries permitted for openpathsampling: https://www.piwheels.org/simple/openpathsampling/openpathsampling-1.5.1-py2.py3-none-any.whl#sha256=b19b5ce7651bbe666001369e51b2dc681acca80610e8c8d1fe092badbf908d22 (from https://www.piwheels.org/simple/openpathsampling/) 2024-01-06T11:30:50,343 Skipping link: No binaries permitted for openpathsampling: https://www.piwheels.org/simple/openpathsampling/openpathsampling-1.5.0-py2.py3-none-any.whl#sha256=7848543f7191c361a2e3028f0bcb9e3623a15c85d3566ccdfbe386b50874db63 (from https://www.piwheels.org/simple/openpathsampling/) 2024-01-06T11:30:50,344 Skipping link: No binaries permitted for openpathsampling: https://www.piwheels.org/simple/openpathsampling/openpathsampling-1.4.2-py2.py3-none-any.whl#sha256=eb561ae485b78b8b3b12e3ee332d22e3e27f331e083508497c9a040fb240ec3b (from https://www.piwheels.org/simple/openpathsampling/) 2024-01-06T11:30:50,344 Skipping link: No binaries permitted for openpathsampling: https://www.piwheels.org/simple/openpathsampling/openpathsampling-1.4.1-py2.py3-none-any.whl#sha256=5e36977bd5aa1398eb8b685ae2e743f9ddc082a9dcb44f32c6b9b8b22e78b2af (from https://www.piwheels.org/simple/openpathsampling/) 2024-01-06T11:30:50,345 Skipping link: No binaries permitted for openpathsampling: https://www.piwheels.org/simple/openpathsampling/openpathsampling-1.4.0-py2.py3-none-any.whl#sha256=9bd1b86a559d477d9d1ffbe8ca9a444a92969d37704dc484deb193b4e5e87666 (from https://www.piwheels.org/simple/openpathsampling/) 2024-01-06T11:30:50,346 Skipping link: No binaries permitted for openpathsampling: https://www.piwheels.org/simple/openpathsampling/openpathsampling-1.3.0-py2.py3-none-any.whl#sha256=c82dcb168f705ca3fb414d8622792c4d9ef3700c41777d0c7b04912df70edf46 (from https://www.piwheels.org/simple/openpathsampling/) 2024-01-06T11:30:50,346 Skipping link: No binaries permitted for openpathsampling: https://www.piwheels.org/simple/openpathsampling/openpathsampling-1.2.0-py2.py3-none-any.whl#sha256=15014f6d0f3cef0b8f272d50b15f5475b8ad0fdf3a008a1842700242d75a850c (from https://www.piwheels.org/simple/openpathsampling/) 2024-01-06T11:30:50,347 Skipping link: No binaries permitted for openpathsampling: https://www.piwheels.org/simple/openpathsampling/openpathsampling-1.1.0-py2.py3-none-any.whl#sha256=0c9268baddfc1648d879f87e26866fcb091cc87462067216d0b516ca4058524b (from https://www.piwheels.org/simple/openpathsampling/) 2024-01-06T11:30:50,347 Skipping link: not a file: https://www.piwheels.org/simple/openpathsampling/ 2024-01-06T11:30:50,348 Skipping link: not a file: https://pypi.org/simple/openpathsampling/ 2024-01-06T11:30:50,367 Given no hashes to check 1 links for project 'openpathsampling': discarding no candidates 2024-01-06T11:30:50,385 Collecting openpathsampling==1.6.0 2024-01-06T11:30:50,387 Created temporary directory: /tmp/pip-unpack-1iaxn1z2 2024-01-06T11:30:50,625 Downloading openpathsampling-1.6.0.tar.gz (3.1 MB) 2024-01-06T11:30:51,888 Added openpathsampling==1.6.0 from https://files.pythonhosted.org/packages/e0/8b/a8c16cf82c04153816aec79ac9c6867513a2affa473dec398d4ce021cd50/openpathsampling-1.6.0.tar.gz to build tracker '/tmp/pip-build-tracker-s8j4idk1' 2024-01-06T11:30:51,890 Running setup.py (path:/tmp/pip-wheel-cuh_r4rg/openpathsampling_f5989198b5c34143993c0c3646d99745/setup.py) egg_info for package openpathsampling 2024-01-06T11:30:51,891 Created temporary directory: /tmp/pip-pip-egg-info-8g5y0too 2024-01-06T11:30:51,892 Preparing metadata (setup.py): started 2024-01-06T11:30:51,893 Running command python setup.py egg_info 2024-01-06T11:30:53,062 running egg_info 2024-01-06T11:30:53,063 creating /tmp/pip-pip-egg-info-8g5y0too/openpathsampling.egg-info 2024-01-06T11:30:53,087 writing /tmp/pip-pip-egg-info-8g5y0too/openpathsampling.egg-info/PKG-INFO 2024-01-06T11:30:53,093 writing dependency_links to /tmp/pip-pip-egg-info-8g5y0too/openpathsampling.egg-info/dependency_links.txt 2024-01-06T11:30:53,096 writing requirements to /tmp/pip-pip-egg-info-8g5y0too/openpathsampling.egg-info/requires.txt 2024-01-06T11:30:53,097 writing top-level names to /tmp/pip-pip-egg-info-8g5y0too/openpathsampling.egg-info/top_level.txt 2024-01-06T11:30:53,098 writing manifest file '/tmp/pip-pip-egg-info-8g5y0too/openpathsampling.egg-info/SOURCES.txt' 2024-01-06T11:30:53,208 reading manifest file '/tmp/pip-pip-egg-info-8g5y0too/openpathsampling.egg-info/SOURCES.txt' 2024-01-06T11:30:53,209 reading manifest template 'MANIFEST.in' 2024-01-06T11:30:53,210 warning: manifest_maker: MANIFEST.in, line 1: unknown action 'LICENSE' 2024-01-06T11:30:53,229 adding license file 'LICENSE' 2024-01-06T11:30:53,243 writing manifest file '/tmp/pip-pip-egg-info-8g5y0too/openpathsampling.egg-info/SOURCES.txt' 2024-01-06T11:30:53,351 Preparing metadata (setup.py): finished with status 'done' 2024-01-06T11:30:53,355 Source in /tmp/pip-wheel-cuh_r4rg/openpathsampling_f5989198b5c34143993c0c3646d99745 has version 1.6.0, which satisfies requirement openpathsampling==1.6.0 from https://files.pythonhosted.org/packages/e0/8b/a8c16cf82c04153816aec79ac9c6867513a2affa473dec398d4ce021cd50/openpathsampling-1.6.0.tar.gz 2024-01-06T11:30:53,356 Removed openpathsampling==1.6.0 from https://files.pythonhosted.org/packages/e0/8b/a8c16cf82c04153816aec79ac9c6867513a2affa473dec398d4ce021cd50/openpathsampling-1.6.0.tar.gz from build tracker '/tmp/pip-build-tracker-s8j4idk1' 2024-01-06T11:30:53,362 Created temporary directory: /tmp/pip-unpack-v8hth028 2024-01-06T11:30:53,363 Created temporary directory: /tmp/pip-unpack-a1u_ix86 2024-01-06T11:30:53,394 Building wheels for collected packages: openpathsampling 2024-01-06T11:30:53,398 Created temporary directory: /tmp/pip-wheel-pdlfvih8 2024-01-06T11:30:53,399 Building wheel for openpathsampling (setup.py): started 2024-01-06T11:30:53,400 Destination directory: /tmp/pip-wheel-pdlfvih8 2024-01-06T11:30:53,400 Running command python setup.py bdist_wheel 2024-01-06T11:30:54,490 running bdist_wheel 2024-01-06T11:30:54,584 running build 2024-01-06T11:30:54,585 running build_py 2024-01-06T11:30:54,611 creating build 2024-01-06T11:30:54,612 creating build/lib 2024-01-06T11:30:54,613 creating build/lib/openpathsampling 2024-01-06T11:30:54,614 copying openpathsampling/movechange.py -> build/lib/openpathsampling 2024-01-06T11:30:54,616 copying openpathsampling/shooting.py -> build/lib/openpathsampling 2024-01-06T11:30:54,618 copying openpathsampling/collectivevariable.py -> build/lib/openpathsampling 2024-01-06T11:30:54,621 copying openpathsampling/version.py -> build/lib/openpathsampling 2024-01-06T11:30:54,623 copying openpathsampling/visualize.py -> build/lib/openpathsampling 2024-01-06T11:30:54,626 copying openpathsampling/step_visualizer_2D.py -> build/lib/openpathsampling 2024-01-06T11:30:54,628 copying openpathsampling/sample.py -> build/lib/openpathsampling 2024-01-06T11:30:54,631 copying openpathsampling/__init__.py -> build/lib/openpathsampling 2024-01-06T11:30:54,633 copying openpathsampling/deprecations.py -> build/lib/openpathsampling 2024-01-06T11:30:54,635 copying openpathsampling/snapshot_modifier.py -> build/lib/openpathsampling 2024-01-06T11:30:54,638 copying openpathsampling/bias_function.py -> build/lib/openpathsampling 2024-01-06T11:30:54,640 copying openpathsampling/tools.py -> build/lib/openpathsampling 2024-01-06T11:30:54,645 copying openpathsampling/pathmover.py -> build/lib/openpathsampling 2024-01-06T11:30:54,649 copying openpathsampling/integration_tools.py -> build/lib/openpathsampling 2024-01-06T11:30:54,651 copying openpathsampling/rng.py -> build/lib/openpathsampling 2024-01-06T11:30:54,652 copying openpathsampling/treelogic.py -> build/lib/openpathsampling 2024-01-06T11:30:54,654 copying openpathsampling/volume.py -> build/lib/openpathsampling 2024-01-06T11:30:54,657 copying openpathsampling/range_logic.py -> build/lib/openpathsampling 2024-01-06T11:30:54,659 copying openpathsampling/_installed_version.py -> build/lib/openpathsampling 2024-01-06T11:30:54,660 copying openpathsampling/ops_logging.py -> build/lib/openpathsampling 2024-01-06T11:30:54,662 copying openpathsampling/pathmover_inout.py -> build/lib/openpathsampling 2024-01-06T11:30:54,665 copying openpathsampling/progress.py -> build/lib/openpathsampling 2024-01-06T11:30:54,666 copying openpathsampling/ensemble.py -> build/lib/openpathsampling 2024-01-06T11:30:54,672 creating build/lib/openpathsampling/tests 2024-01-06T11:30:54,673 copying openpathsampling/tests/test_plumed_wrapper.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,675 copying openpathsampling/tests/test_attribute.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,677 copying openpathsampling/tests/test_visit_all_states.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,679 copying openpathsampling/tests/test_openmm_engine.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,682 copying openpathsampling/tests/test_transitions.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,684 copying openpathsampling/tests/test_rng.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,686 copying openpathsampling/tests/test_storage.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,688 copying openpathsampling/tests/test_netcdfplus_base.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,690 copying openpathsampling/tests/test_collectivevariable.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,692 copying openpathsampling/tests/test_bias_function.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,694 copying openpathsampling/tests/test_external_snapshots.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,696 copying openpathsampling/tests/test_ms_outer_interface.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,698 copying openpathsampling/tests/test_channel_analysis.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,700 copying openpathsampling/tests/test_integration_tools.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,702 copying openpathsampling/tests/test_wham.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,704 copying openpathsampling/tests/test_openmm_snapshot.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,706 copying openpathsampling/tests/test_snapshot.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,708 copying openpathsampling/tests/test_features.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,709 copying openpathsampling/tests/test_volume.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,711 copying openpathsampling/tests/test_range_logic.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,714 copying openpathsampling/tests/test_shared.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,715 copying openpathsampling/tests/test_resampling_statistics.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,717 copying openpathsampling/tests/test_pathmover.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,721 copying openpathsampling/tests/__init__.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,722 copying openpathsampling/tests/test_dynamicsengine.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,724 copying openpathsampling/tests/test_toy_features.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,726 copying openpathsampling/tests/test_path_histogram.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,728 copying openpathsampling/tests/test_openmm_tools.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,730 copying openpathsampling/tests/test_spring_shooting.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,733 copying openpathsampling/tests/test_histogram.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,735 copying openpathsampling/tests/test_mdtraj_support.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,737 copying openpathsampling/tests/test_tools.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,739 copying openpathsampling/tests/test_ensemble.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,742 copying openpathsampling/tests/test_external_engine.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,744 copying openpathsampling/tests/test_sample.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,747 copying openpathsampling/tests/test_sshooting_analysis.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,749 copying openpathsampling/tests/test_progress.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,751 copying openpathsampling/tests/test_interface_set.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,753 copying openpathsampling/tests/test_shooting.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,755 copying openpathsampling/tests/test_pyemma_cv.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,757 copying openpathsampling/tests/test_lookup_function.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,759 copying openpathsampling/tests/test_api.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,761 copying openpathsampling/tests/test_sshooting_simulator.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,763 copying openpathsampling/tests/test_trajectory.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,765 copying openpathsampling/tests/test_reactive_flux_analysis.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,767 copying openpathsampling/tests/test_pathsimulator.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,769 copying openpathsampling/tests/test_deprecations.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,772 copying openpathsampling/tests/test_network.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,774 copying openpathsampling/tests/test_shooting_point_analysis.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,776 copying openpathsampling/tests/test_tis_analysis.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,779 copying openpathsampling/tests/test_snapshot_modifier.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,781 copying openpathsampling/tests/test_movestrategy.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,785 copying openpathsampling/tests/test_movescheme.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,788 copying openpathsampling/tests/test_toy_dynamics.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,790 copying openpathsampling/tests/test_gromacs_engine.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,792 copying openpathsampling/tests/test_part_in_b_tps.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,794 copying openpathsampling/tests/test_trajectory_transition_analysis.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,796 copying openpathsampling/tests/test_helpers.py -> build/lib/openpathsampling/tests 2024-01-06T11:30:54,799 creating build/lib/openpathsampling/high_level 2024-01-06T11:30:54,800 copying openpathsampling/high_level/move_strategy.py -> build/lib/openpathsampling/high_level 2024-01-06T11:30:54,803 copying openpathsampling/high_level/__init__.py -> build/lib/openpathsampling/high_level 2024-01-06T11:30:54,804 copying openpathsampling/high_level/network.py -> build/lib/openpathsampling/high_level 2024-01-06T11:30:54,807 copying openpathsampling/high_level/part_in_b_tps.py -> build/lib/openpathsampling/high_level 2024-01-06T11:30:54,809 copying openpathsampling/high_level/transition.py -> build/lib/openpathsampling/high_level 2024-01-06T11:30:54,812 copying openpathsampling/high_level/move_scheme.py -> build/lib/openpathsampling/high_level 2024-01-06T11:30:54,815 copying openpathsampling/high_level/interface_set.py -> build/lib/openpathsampling/high_level 2024-01-06T11:30:54,817 copying openpathsampling/high_level/ms_outer_interface.py -> build/lib/openpathsampling/high_level 2024-01-06T11:30:54,820 creating build/lib/openpathsampling/pathmovers 2024-01-06T11:30:54,820 copying openpathsampling/pathmovers/move_schemes.py -> build/lib/openpathsampling/pathmovers 2024-01-06T11:30:54,822 copying openpathsampling/pathmovers/__init__.py -> build/lib/openpathsampling/pathmovers 2024-01-06T11:30:54,824 copying openpathsampling/pathmovers/spring_shooting.py -> build/lib/openpathsampling/pathmovers 2024-01-06T11:30:54,826 copying openpathsampling/pathmovers/move_strategies.py -> build/lib/openpathsampling/pathmovers 2024-01-06T11:30:54,828 creating build/lib/openpathsampling/experimental 2024-01-06T11:30:54,829 copying openpathsampling/experimental/__init__.py -> build/lib/openpathsampling/experimental 2024-01-06T11:30:54,831 creating build/lib/openpathsampling/collectivevariables 2024-01-06T11:30:54,832 copying openpathsampling/collectivevariables/__init__.py -> build/lib/openpathsampling/collectivevariables 2024-01-06T11:30:54,834 copying openpathsampling/collectivevariables/plumed_wrapper.py -> build/lib/openpathsampling/collectivevariables 2024-01-06T11:30:54,837 creating build/lib/openpathsampling/ensembles 2024-01-06T11:30:54,838 copying openpathsampling/ensembles/visit_all_states.py -> build/lib/openpathsampling/ensembles 2024-01-06T11:30:54,840 copying openpathsampling/ensembles/__init__.py -> build/lib/openpathsampling/ensembles 2024-01-06T11:30:54,842 creating build/lib/openpathsampling/storage 2024-01-06T11:30:54,843 copying openpathsampling/storage/distributed.py -> build/lib/openpathsampling/storage 2024-01-06T11:30:54,845 copying openpathsampling/storage/util.py -> build/lib/openpathsampling/storage 2024-01-06T11:30:54,847 copying openpathsampling/storage/__init__.py -> build/lib/openpathsampling/storage 2024-01-06T11:30:54,848 copying openpathsampling/storage/storage.py -> build/lib/openpathsampling/storage 2024-01-06T11:30:54,851 creating build/lib/openpathsampling/beta 2024-01-06T11:30:54,852 copying openpathsampling/beta/__init__.py -> build/lib/openpathsampling/beta 2024-01-06T11:30:54,853 copying openpathsampling/beta/hooks.py -> build/lib/openpathsampling/beta 2024-01-06T11:30:54,857 creating build/lib/openpathsampling/analysis 2024-01-06T11:30:54,857 copying openpathsampling/analysis/shooting_point_analysis.py -> build/lib/openpathsampling/analysis 2024-01-06T11:30:54,860 copying openpathsampling/analysis/path_histogram.py -> build/lib/openpathsampling/analysis 2024-01-06T11:30:54,862 copying openpathsampling/analysis/trajectory_transition_analysis.py -> build/lib/openpathsampling/analysis 2024-01-06T11:30:54,864 copying openpathsampling/analysis/replica_network.py -> build/lib/openpathsampling/analysis 2024-01-06T11:30:54,867 copying openpathsampling/analysis/channel_analysis.py -> build/lib/openpathsampling/analysis 2024-01-06T11:30:54,869 copying openpathsampling/analysis/__init__.py -> build/lib/openpathsampling/analysis 2024-01-06T11:30:54,870 copying openpathsampling/analysis/tools.py -> build/lib/openpathsampling/analysis 2024-01-06T11:30:54,872 copying openpathsampling/analysis/sshooting_analysis.py -> build/lib/openpathsampling/analysis 2024-01-06T11:30:54,875 copying openpathsampling/analysis/ensemble_representation.py -> build/lib/openpathsampling/analysis 2024-01-06T11:30:54,876 copying openpathsampling/analysis/reactive_flux_analysis.py -> build/lib/openpathsampling/analysis 2024-01-06T11:30:54,879 creating build/lib/openpathsampling/strategies 2024-01-06T11:30:54,879 copying openpathsampling/strategies/__init__.py -> build/lib/openpathsampling/strategies 2024-01-06T11:30:54,882 creating build/lib/openpathsampling/netcdfplus 2024-01-06T11:30:54,883 copying openpathsampling/netcdfplus/base.py -> build/lib/openpathsampling/netcdfplus 2024-01-06T11:30:54,885 copying openpathsampling/netcdfplus/version.py -> build/lib/openpathsampling/netcdfplus 2024-01-06T11:30:54,887 copying openpathsampling/netcdfplus/cache.py -> build/lib/openpathsampling/netcdfplus 2024-01-06T11:30:54,889 copying openpathsampling/netcdfplus/util.py -> build/lib/openpathsampling/netcdfplus 2024-01-06T11:30:54,891 copying openpathsampling/netcdfplus/__init__.py -> build/lib/openpathsampling/netcdfplus 2024-01-06T11:30:54,893 copying openpathsampling/netcdfplus/attribute.py -> build/lib/openpathsampling/netcdfplus 2024-01-06T11:30:54,895 copying openpathsampling/netcdfplus/dictify.py -> build/lib/openpathsampling/netcdfplus 2024-01-06T11:30:54,897 copying openpathsampling/netcdfplus/proxy.py -> build/lib/openpathsampling/netcdfplus 2024-01-06T11:30:54,899 copying openpathsampling/netcdfplus/chaindict.py -> build/lib/openpathsampling/netcdfplus 2024-01-06T11:30:54,902 copying openpathsampling/netcdfplus/netcdfplus.py -> build/lib/openpathsampling/netcdfplus 2024-01-06T11:30:54,905 creating build/lib/openpathsampling/numerics 2024-01-06T11:30:54,906 copying openpathsampling/numerics/lookup_function.py -> build/lib/openpathsampling/numerics 2024-01-06T11:30:54,908 copying openpathsampling/numerics/wham.py -> build/lib/openpathsampling/numerics 2024-01-06T11:30:54,910 copying openpathsampling/numerics/__init__.py -> build/lib/openpathsampling/numerics 2024-01-06T11:30:54,912 copying openpathsampling/numerics/histogram.py -> build/lib/openpathsampling/numerics 2024-01-06T11:30:54,914 copying openpathsampling/numerics/resampling_statistics.py -> build/lib/openpathsampling/numerics 2024-01-06T11:30:54,917 creating build/lib/openpathsampling/engines 2024-01-06T11:30:54,918 copying openpathsampling/engines/delayedinterrupt.py -> build/lib/openpathsampling/engines 2024-01-06T11:30:54,920 copying openpathsampling/engines/snapshot.py -> build/lib/openpathsampling/engines 2024-01-06T11:30:54,922 copying openpathsampling/engines/trajectory.py -> build/lib/openpathsampling/engines 2024-01-06T11:30:54,924 copying openpathsampling/engines/__init__.py -> build/lib/openpathsampling/engines 2024-01-06T11:30:54,925 copying openpathsampling/engines/topology.py -> build/lib/openpathsampling/engines 2024-01-06T11:30:54,927 copying openpathsampling/engines/external_engine.py -> build/lib/openpathsampling/engines 2024-01-06T11:30:54,929 copying openpathsampling/engines/dynamics_engine.py -> build/lib/openpathsampling/engines 2024-01-06T11:30:54,932 creating build/lib/openpathsampling/pathsimulators 2024-01-06T11:30:54,933 copying openpathsampling/pathsimulators/shoot_snapshots.py -> build/lib/openpathsampling/pathsimulators 2024-01-06T11:30:54,935 copying openpathsampling/pathsimulators/sshooting_simulator.py -> build/lib/openpathsampling/pathsimulators 2024-01-06T11:30:54,937 copying openpathsampling/pathsimulators/path_sampling.py -> build/lib/openpathsampling/pathsimulators 2024-01-06T11:30:54,939 copying openpathsampling/pathsimulators/bootstrap_init_conds.py -> build/lib/openpathsampling/pathsimulators 2024-01-06T11:30:54,941 copying openpathsampling/pathsimulators/__init__.py -> build/lib/openpathsampling/pathsimulators 2024-01-06T11:30:54,942 copying openpathsampling/pathsimulators/reactive_flux.py -> build/lib/openpathsampling/pathsimulators 2024-01-06T11:30:54,944 copying openpathsampling/pathsimulators/path_simulator.py -> build/lib/openpathsampling/pathsimulators 2024-01-06T11:30:54,947 copying openpathsampling/pathsimulators/direct_md.py -> build/lib/openpathsampling/pathsimulators 2024-01-06T11:30:54,949 creating build/lib/openpathsampling/tests/analysis 2024-01-06T11:30:54,950 copying openpathsampling/tests/analysis/__init__.py -> build/lib/openpathsampling/tests/analysis 2024-01-06T11:30:54,952 copying openpathsampling/tests/analysis/conftest.py -> build/lib/openpathsampling/tests/analysis 2024-01-06T11:30:54,954 creating build/lib/openpathsampling/tests/pathsimulators 2024-01-06T11:30:54,955 copying openpathsampling/tests/pathsimulators/test_hooks.py -> build/lib/openpathsampling/tests/pathsimulators 2024-01-06T11:30:54,957 copying openpathsampling/tests/pathsimulators/__init__.py -> build/lib/openpathsampling/tests/pathsimulators 2024-01-06T11:30:54,959 creating build/lib/openpathsampling/tests/analysis/utils 2024-01-06T11:30:54,960 copying openpathsampling/tests/analysis/utils/fixture_classes.py -> build/lib/openpathsampling/tests/analysis/utils 2024-01-06T11:30:54,964 copying openpathsampling/tests/analysis/utils/test_fixture_classes.py -> build/lib/openpathsampling/tests/analysis/utils 2024-01-06T11:30:54,966 copying openpathsampling/tests/analysis/utils/test_mock_movers.py -> build/lib/openpathsampling/tests/analysis/utils 2024-01-06T11:30:54,968 copying openpathsampling/tests/analysis/utils/__init__.py -> build/lib/openpathsampling/tests/analysis/utils 2024-01-06T11:30:54,969 copying openpathsampling/tests/analysis/utils/mock_movers.py -> build/lib/openpathsampling/tests/analysis/utils 2024-01-06T11:30:54,973 creating build/lib/openpathsampling/experimental/simstore 2024-01-06T11:30:54,974 copying openpathsampling/experimental/simstore/test_dict_serialization_helpers.py -> build/lib/openpathsampling/experimental/simstore 2024-01-06T11:30:54,976 copying openpathsampling/experimental/simstore/test_storable_function_integration.py -> build/lib/openpathsampling/experimental/simstore 2024-01-06T11:30:54,978 copying openpathsampling/experimental/simstore/callable_codec.py -> build/lib/openpathsampling/experimental/simstore 2024-01-06T11:30:54,980 copying openpathsampling/experimental/simstore/test_storage.py -> build/lib/openpathsampling/experimental/simstore 2024-01-06T11:30:54,982 copying openpathsampling/experimental/simstore/test_class_info.py -> build/lib/openpathsampling/experimental/simstore 2024-01-06T11:30:54,985 copying openpathsampling/experimental/simstore/storable_functions.py -> build/lib/openpathsampling/experimental/simstore 2024-01-06T11:30:54,987 copying openpathsampling/experimental/simstore/test_custom_json.py -> build/lib/openpathsampling/experimental/simstore 2024-01-06T11:30:54,989 copying openpathsampling/experimental/simstore/uuids.py -> build/lib/openpathsampling/experimental/simstore 2024-01-06T11:30:54,990 copying openpathsampling/experimental/simstore/test_storable_function.py -> build/lib/openpathsampling/experimental/simstore 2024-01-06T11:30:54,993 copying openpathsampling/experimental/simstore/test_serialization.py -> build/lib/openpathsampling/experimental/simstore 2024-01-06T11:30:54,994 copying openpathsampling/experimental/simstore/serialization.py -> build/lib/openpathsampling/experimental/simstore 2024-01-06T11:30:54,996 copying openpathsampling/experimental/simstore/class_info.py -> build/lib/openpathsampling/experimental/simstore 2024-01-06T11:30:54,999 copying openpathsampling/experimental/simstore/__init__.py -> build/lib/openpathsampling/experimental/simstore 2024-01-06T11:30:55,000 copying openpathsampling/experimental/simstore/storage.py -> build/lib/openpathsampling/experimental/simstore 2024-01-06T11:30:55,003 copying openpathsampling/experimental/simstore/test_serialization_helpers.py -> build/lib/openpathsampling/experimental/simstore 2024-01-06T11:30:55,005 copying openpathsampling/experimental/simstore/sql_backend.py -> build/lib/openpathsampling/experimental/simstore 2024-01-06T11:30:55,007 copying openpathsampling/experimental/simstore/attribute_handlers.py -> build/lib/openpathsampling/experimental/simstore 2024-01-06T11:30:55,009 copying openpathsampling/experimental/simstore/serialization_helpers.py -> build/lib/openpathsampling/experimental/simstore 2024-01-06T11:30:55,012 copying openpathsampling/experimental/simstore/tools.py -> build/lib/openpathsampling/experimental/simstore 2024-01-06T11:30:55,013 copying openpathsampling/experimental/simstore/test_backend.py -> build/lib/openpathsampling/experimental/simstore 2024-01-06T11:30:55,015 copying openpathsampling/experimental/simstore/backend.py -> build/lib/openpathsampling/experimental/simstore 2024-01-06T11:30:55,017 copying openpathsampling/experimental/simstore/test_tools.py -> build/lib/openpathsampling/experimental/simstore 2024-01-06T11:30:55,018 copying openpathsampling/experimental/simstore/my_types.py -> build/lib/openpathsampling/experimental/simstore 2024-01-06T11:30:55,020 copying openpathsampling/experimental/simstore/wrapper.py -> build/lib/openpathsampling/experimental/simstore 2024-01-06T11:30:55,022 copying openpathsampling/experimental/simstore/memory_backend.py -> build/lib/openpathsampling/experimental/simstore 2024-01-06T11:30:55,024 copying openpathsampling/experimental/simstore/custom_json.py -> build/lib/openpathsampling/experimental/simstore 2024-01-06T11:30:55,026 copying openpathsampling/experimental/simstore/test_type_ident.py -> build/lib/openpathsampling/experimental/simstore 2024-01-06T11:30:55,027 copying openpathsampling/experimental/simstore/test_sql_backend.py -> build/lib/openpathsampling/experimental/simstore 2024-01-06T11:30:55,030 copying openpathsampling/experimental/simstore/test_tags_table.py -> build/lib/openpathsampling/experimental/simstore 2024-01-06T11:30:55,032 copying openpathsampling/experimental/simstore/proxy.py -> build/lib/openpathsampling/experimental/simstore 2024-01-06T11:30:55,033 copying openpathsampling/experimental/simstore/type_ident.py -> build/lib/openpathsampling/experimental/simstore 2024-01-06T11:30:55,035 copying openpathsampling/experimental/simstore/test_attribute_handlers.py -> build/lib/openpathsampling/experimental/simstore 2024-01-06T11:30:55,037 copying openpathsampling/experimental/simstore/class_lookup.py -> build/lib/openpathsampling/experimental/simstore 2024-01-06T11:30:55,039 copying openpathsampling/experimental/simstore/tags_table.py -> build/lib/openpathsampling/experimental/simstore 2024-01-06T11:30:55,040 copying openpathsampling/experimental/simstore/test_utils.py -> build/lib/openpathsampling/experimental/simstore 2024-01-06T11:30:55,042 copying openpathsampling/experimental/simstore/test_callable_codec.py -> build/lib/openpathsampling/experimental/simstore 2024-01-06T11:30:55,044 copying openpathsampling/experimental/simstore/dict_serialization_helpers.py -> build/lib/openpathsampling/experimental/simstore 2024-01-06T11:30:55,047 creating build/lib/openpathsampling/experimental/storage 2024-01-06T11:30:55,048 copying openpathsampling/experimental/storage/test_snapshot_integrations.py -> build/lib/openpathsampling/experimental/storage 2024-01-06T11:30:55,049 copying openpathsampling/experimental/storage/test_pathsampling.py -> build/lib/openpathsampling/experimental/storage 2024-01-06T11:30:55,051 copying openpathsampling/experimental/storage/test_simtk_unit.py -> build/lib/openpathsampling/experimental/storage 2024-01-06T11:30:55,052 copying openpathsampling/experimental/storage/__init__.py -> build/lib/openpathsampling/experimental/storage 2024-01-06T11:30:55,054 copying openpathsampling/experimental/storage/test_snapshots_table.py -> build/lib/openpathsampling/experimental/storage 2024-01-06T11:30:55,056 copying openpathsampling/experimental/storage/monkey_patches.py -> build/lib/openpathsampling/experimental/storage 2024-01-06T11:30:55,057 copying openpathsampling/experimental/storage/snapshots_table.py -> build/lib/openpathsampling/experimental/storage 2024-01-06T11:30:55,059 copying openpathsampling/experimental/storage/collective_variables.py -> build/lib/openpathsampling/experimental/storage 2024-01-06T11:30:55,061 copying openpathsampling/experimental/storage/simtk_unit.py -> build/lib/openpathsampling/experimental/storage 2024-01-06T11:30:55,063 copying openpathsampling/experimental/storage/ops_storage.py -> build/lib/openpathsampling/experimental/storage 2024-01-06T11:30:55,065 copying openpathsampling/experimental/storage/test_collective_variables.py -> build/lib/openpathsampling/experimental/storage 2024-01-06T11:30:55,067 copying openpathsampling/experimental/storage/snapshots.py -> build/lib/openpathsampling/experimental/storage 2024-01-06T11:30:55,069 copying openpathsampling/experimental/storage/mdtraj_json.py -> build/lib/openpathsampling/experimental/storage 2024-01-06T11:30:55,071 copying openpathsampling/experimental/storage/test_snapshots.py -> build/lib/openpathsampling/experimental/storage 2024-01-06T11:30:55,073 copying openpathsampling/experimental/storage/test_regressions.py -> build/lib/openpathsampling/experimental/storage 2024-01-06T11:30:55,074 copying openpathsampling/experimental/storage/test_monkey_patches.py -> build/lib/openpathsampling/experimental/storage 2024-01-06T11:30:55,076 copying openpathsampling/experimental/storage/test_mdtraj_json.py -> build/lib/openpathsampling/experimental/storage 2024-01-06T11:30:55,078 creating build/lib/openpathsampling/storage/stores 2024-01-06T11:30:55,079 copying openpathsampling/storage/stores/movechange.py -> build/lib/openpathsampling/storage/stores 2024-01-06T11:30:55,081 copying openpathsampling/storage/stores/snapshot_wrapper.py -> build/lib/openpathsampling/storage/stores 2024-01-06T11:30:55,084 copying openpathsampling/storage/stores/collectivevariable.py -> build/lib/openpathsampling/storage/stores 2024-01-06T11:30:55,086 copying openpathsampling/storage/stores/snapshot_feature.py -> build/lib/openpathsampling/storage/stores 2024-01-06T11:30:55,087 copying openpathsampling/storage/stores/snapshot_base.py -> build/lib/openpathsampling/storage/stores 2024-01-06T11:30:55,089 copying openpathsampling/storage/stores/trajectory.py -> build/lib/openpathsampling/storage/stores 2024-01-06T11:30:55,091 copying openpathsampling/storage/stores/mcstep.py -> build/lib/openpathsampling/storage/stores 2024-01-06T11:30:55,093 copying openpathsampling/storage/stores/snapshot_value.py -> build/lib/openpathsampling/storage/stores 2024-01-06T11:30:55,095 copying openpathsampling/storage/stores/sample.py -> build/lib/openpathsampling/storage/stores 2024-01-06T11:30:55,096 copying openpathsampling/storage/stores/__init__.py -> build/lib/openpathsampling/storage/stores 2024-01-06T11:30:55,098 copying openpathsampling/storage/stores/pathsimulator.py -> build/lib/openpathsampling/storage/stores 2024-01-06T11:30:55,100 creating build/lib/openpathsampling/analysis/tis 2024-01-06T11:30:55,100 copying openpathsampling/analysis/tis/crossing_probability.py -> build/lib/openpathsampling/analysis/tis 2024-01-06T11:30:55,103 copying openpathsampling/analysis/tis/__init__.py -> build/lib/openpathsampling/analysis/tis 2024-01-06T11:30:55,104 copying openpathsampling/analysis/tis/core.py -> build/lib/openpathsampling/analysis/tis 2024-01-06T11:30:55,106 copying openpathsampling/analysis/tis/flux.py -> build/lib/openpathsampling/analysis/tis 2024-01-06T11:30:55,108 copying openpathsampling/analysis/tis/misc.py -> build/lib/openpathsampling/analysis/tis 2024-01-06T11:30:55,110 copying openpathsampling/analysis/tis/standard_analysis.py -> build/lib/openpathsampling/analysis/tis 2024-01-06T11:30:55,113 creating build/lib/openpathsampling/netcdfplus/stores 2024-01-06T11:30:55,114 copying openpathsampling/netcdfplus/stores/object.py -> build/lib/openpathsampling/netcdfplus/stores 2024-01-06T11:30:55,117 copying openpathsampling/netcdfplus/stores/dict.py -> build/lib/openpathsampling/netcdfplus/stores 2024-01-06T11:30:55,119 copying openpathsampling/netcdfplus/stores/__init__.py -> build/lib/openpathsampling/netcdfplus/stores 2024-01-06T11:30:55,121 copying openpathsampling/netcdfplus/stores/attribute.py -> build/lib/openpathsampling/netcdfplus/stores 2024-01-06T11:30:55,123 copying openpathsampling/netcdfplus/stores/named.py -> build/lib/openpathsampling/netcdfplus/stores 2024-01-06T11:30:55,125 copying openpathsampling/netcdfplus/stores/variable.py -> build/lib/openpathsampling/netcdfplus/stores 2024-01-06T11:30:55,127 copying openpathsampling/netcdfplus/stores/indexed.py -> build/lib/openpathsampling/netcdfplus/stores 2024-01-06T11:30:55,129 copying openpathsampling/netcdfplus/stores/value.py -> build/lib/openpathsampling/netcdfplus/stores 2024-01-06T11:30:55,131 creating build/lib/openpathsampling/engines/features 2024-01-06T11:30:55,132 copying openpathsampling/engines/features/base.py -> build/lib/openpathsampling/engines/features 2024-01-06T11:30:55,135 copying openpathsampling/engines/features/box_vectors.py -> build/lib/openpathsampling/engines/features 2024-01-06T11:30:55,137 copying openpathsampling/engines/features/statics.py -> build/lib/openpathsampling/engines/features 2024-01-06T11:30:55,139 copying openpathsampling/engines/features/numpydoctools.py -> build/lib/openpathsampling/engines/features 2024-01-06T11:30:55,141 copying openpathsampling/engines/features/__init__.py -> build/lib/openpathsampling/engines/features 2024-01-06T11:30:55,143 copying openpathsampling/engines/features/kinetics.py -> build/lib/openpathsampling/engines/features 2024-01-06T11:30:55,145 copying openpathsampling/engines/features/engine.py -> build/lib/openpathsampling/engines/features 2024-01-06T11:30:55,147 copying openpathsampling/engines/features/coordinates.py -> build/lib/openpathsampling/engines/features 2024-01-06T11:30:55,148 copying openpathsampling/engines/features/topology.py -> build/lib/openpathsampling/engines/features 2024-01-06T11:30:55,150 copying openpathsampling/engines/features/velocities.py -> build/lib/openpathsampling/engines/features 2024-01-06T11:30:55,152 copying openpathsampling/engines/features/shared.py -> build/lib/openpathsampling/engines/features 2024-01-06T11:30:55,155 creating build/lib/openpathsampling/engines/openmm 2024-01-06T11:30:55,156 copying openpathsampling/engines/openmm/snapshot.py -> build/lib/openpathsampling/engines/openmm 2024-01-06T11:30:55,158 copying openpathsampling/engines/openmm/__init__.py -> build/lib/openpathsampling/engines/openmm 2024-01-06T11:30:55,160 copying openpathsampling/engines/openmm/engine.py -> build/lib/openpathsampling/engines/openmm 2024-01-06T11:30:55,162 copying openpathsampling/engines/openmm/tools.py -> build/lib/openpathsampling/engines/openmm 2024-01-06T11:30:55,164 copying openpathsampling/engines/openmm/topology.py -> build/lib/openpathsampling/engines/openmm 2024-01-06T11:30:55,166 creating build/lib/openpathsampling/engines/external_snapshots 2024-01-06T11:30:55,167 copying openpathsampling/engines/external_snapshots/snapshot.py -> build/lib/openpathsampling/engines/external_snapshots 2024-01-06T11:30:55,170 copying openpathsampling/engines/external_snapshots/__init__.py -> build/lib/openpathsampling/engines/external_snapshots 2024-01-06T11:30:55,172 creating build/lib/openpathsampling/engines/toy 2024-01-06T11:30:55,172 copying openpathsampling/engines/toy/integrators.py -> build/lib/openpathsampling/engines/toy 2024-01-06T11:30:55,175 copying openpathsampling/engines/toy/snapshot.py -> build/lib/openpathsampling/engines/toy 2024-01-06T11:30:55,177 copying openpathsampling/engines/toy/__init__.py -> build/lib/openpathsampling/engines/toy 2024-01-06T11:30:55,178 copying openpathsampling/engines/toy/pes.py -> build/lib/openpathsampling/engines/toy 2024-01-06T11:30:55,180 copying openpathsampling/engines/toy/engine.py -> build/lib/openpathsampling/engines/toy 2024-01-06T11:30:55,182 copying openpathsampling/engines/toy/topology.py -> build/lib/openpathsampling/engines/toy 2024-01-06T11:30:55,185 creating build/lib/openpathsampling/engines/gromacs 2024-01-06T11:30:55,186 copying openpathsampling/engines/gromacs/__init__.py -> build/lib/openpathsampling/engines/gromacs 2024-01-06T11:30:55,187 copying openpathsampling/engines/gromacs/engine.py -> build/lib/openpathsampling/engines/gromacs 2024-01-06T11:30:55,190 creating build/lib/openpathsampling/engines/openmm/features 2024-01-06T11:30:55,191 copying openpathsampling/engines/openmm/features/instantaneous_temperature.py -> build/lib/openpathsampling/engines/openmm/features 2024-01-06T11:30:55,193 copying openpathsampling/engines/openmm/features/traj_quantities.py -> build/lib/openpathsampling/engines/openmm/features 2024-01-06T11:30:55,195 copying openpathsampling/engines/openmm/features/__init__.py -> build/lib/openpathsampling/engines/openmm/features 2024-01-06T11:30:55,197 copying openpathsampling/engines/openmm/features/masses.py -> build/lib/openpathsampling/engines/openmm/features 2024-01-06T11:30:55,199 creating build/lib/openpathsampling/engines/external_snapshots/features 2024-01-06T11:30:55,200 copying openpathsampling/engines/external_snapshots/features/box_vectors.py -> build/lib/openpathsampling/engines/external_snapshots/features 2024-01-06T11:30:55,202 copying openpathsampling/engines/external_snapshots/features/file_info.py -> build/lib/openpathsampling/engines/external_snapshots/features 2024-01-06T11:30:55,203 copying openpathsampling/engines/external_snapshots/features/__init__.py -> build/lib/openpathsampling/engines/external_snapshots/features 2024-01-06T11:30:55,205 copying openpathsampling/engines/external_snapshots/features/coordinates.py -> build/lib/openpathsampling/engines/external_snapshots/features 2024-01-06T11:30:55,207 copying openpathsampling/engines/external_snapshots/features/velocities.py -> build/lib/openpathsampling/engines/external_snapshots/features 2024-01-06T11:30:55,209 creating build/lib/openpathsampling/engines/toy/features 2024-01-06T11:30:55,210 copying openpathsampling/engines/toy/features/instantaneous_temperature.py -> build/lib/openpathsampling/engines/toy/features 2024-01-06T11:30:55,212 copying openpathsampling/engines/toy/features/__init__.py -> build/lib/openpathsampling/engines/toy/features 2024-01-06T11:30:55,214 running egg_info 2024-01-06T11:30:55,269 writing openpathsampling.egg-info/PKG-INFO 2024-01-06T11:30:55,274 writing dependency_links to openpathsampling.egg-info/dependency_links.txt 2024-01-06T11:30:55,277 writing requirements to openpathsampling.egg-info/requires.txt 2024-01-06T11:30:55,278 writing top-level names to openpathsampling.egg-info/top_level.txt 2024-01-06T11:30:55,337 reading manifest file 'openpathsampling.egg-info/SOURCES.txt' 2024-01-06T11:30:55,347 reading manifest template 'MANIFEST.in' 2024-01-06T11:30:55,348 warning: manifest_maker: MANIFEST.in, line 1: unknown action 'LICENSE' 2024-01-06T11:30:55,368 adding license file 'LICENSE' 2024-01-06T11:30:55,386 writing manifest file 'openpathsampling.egg-info/SOURCES.txt' 2024-01-06T11:30:55,390 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'openpathsampling.experimental.simstore.regressions' is absent from the `packages` configuration. 2024-01-06T11:30:55,390 !! 2024-01-06T11:30:55,391 ******************************************************************************** 2024-01-06T11:30:55,391 ############################ 2024-01-06T11:30:55,392 # Package would be ignored # 2024-01-06T11:30:55,392 ############################ 2024-01-06T11:30:55,392 Python recognizes 'openpathsampling.experimental.simstore.regressions' as an importable package[^1], 2024-01-06T11:30:55,393 but it is absent from setuptools' `packages` configuration. 2024-01-06T11:30:55,394 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-06T11:30:55,394 package, please make sure that 'openpathsampling.experimental.simstore.regressions' is explicitly added 2024-01-06T11:30:55,395 to the `packages` configuration field. 2024-01-06T11:30:55,396 Alternatively, you can also rely on setuptools' discovery methods 2024-01-06T11:30:55,397 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-06T11:30:55,398 instead of `find_packages(...)`/`find:`). 2024-01-06T11:30:55,399 You can read more about "package discovery" on setuptools documentation page: 2024-01-06T11:30:55,400 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-06T11:30:55,401 If you don't want 'openpathsampling.experimental.simstore.regressions' to be distributed and are 2024-01-06T11:30:55,402 already explicitly excluding 'openpathsampling.experimental.simstore.regressions' via 2024-01-06T11:30:55,402 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-06T11:30:55,403 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-06T11:30:55,404 combination with a more fine grained `package-data` configuration. 2024-01-06T11:30:55,405 You can read more about "package data files" on setuptools documentation page: 2024-01-06T11:30:55,406 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-06T11:30:55,408 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-06T11:30:55,408 even if it does not contain any `.py` files. 2024-01-06T11:30:55,409 On the other hand, currently there is no concept of package data 2024-01-06T11:30:55,410 directory, all directories are treated like packages. 2024-01-06T11:30:55,410 ******************************************************************************** 2024-01-06T11:30:55,411 !! 2024-01-06T11:30:55,412 check.warn(importable) 2024-01-06T11:30:55,413 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'openpathsampling.resources' is absent from the `packages` configuration. 2024-01-06T11:30:55,414 !! 2024-01-06T11:30:55,415 ******************************************************************************** 2024-01-06T11:30:55,416 ############################ 2024-01-06T11:30:55,416 # Package would be ignored # 2024-01-06T11:30:55,417 ############################ 2024-01-06T11:30:55,417 Python recognizes 'openpathsampling.resources' as an importable package[^1], 2024-01-06T11:30:55,418 but it is absent from setuptools' `packages` configuration. 2024-01-06T11:30:55,418 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-06T11:30:55,419 package, please make sure that 'openpathsampling.resources' is explicitly added 2024-01-06T11:30:55,419 to the `packages` configuration field. 2024-01-06T11:30:55,420 Alternatively, you can also rely on setuptools' discovery methods 2024-01-06T11:30:55,420 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-06T11:30:55,421 instead of `find_packages(...)`/`find:`). 2024-01-06T11:30:55,421 You can read more about "package discovery" on setuptools documentation page: 2024-01-06T11:30:55,422 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-06T11:30:55,423 If you don't want 'openpathsampling.resources' to be distributed and are 2024-01-06T11:30:55,423 already explicitly excluding 'openpathsampling.resources' via 2024-01-06T11:30:55,424 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-06T11:30:55,424 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-06T11:30:55,425 combination with a more fine grained `package-data` configuration. 2024-01-06T11:30:55,426 You can read more about "package data files" on setuptools documentation page: 2024-01-06T11:30:55,427 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-06T11:30:55,428 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-06T11:30:55,429 even if it does not contain any `.py` files. 2024-01-06T11:30:55,429 On the other hand, currently there is no concept of package data 2024-01-06T11:30:55,430 directory, all directories are treated like packages. 2024-01-06T11:30:55,430 ******************************************************************************** 2024-01-06T11:30:55,431 !! 2024-01-06T11:30:55,431 check.warn(importable) 2024-01-06T11:30:55,432 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'openpathsampling.tests.external_engine' is absent from the `packages` configuration. 2024-01-06T11:30:55,433 !! 2024-01-06T11:30:55,434 ******************************************************************************** 2024-01-06T11:30:55,434 ############################ 2024-01-06T11:30:55,435 # Package would be ignored # 2024-01-06T11:30:55,435 ############################ 2024-01-06T11:30:55,435 Python recognizes 'openpathsampling.tests.external_engine' as an importable package[^1], 2024-01-06T11:30:55,436 but it is absent from setuptools' `packages` configuration. 2024-01-06T11:30:55,437 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-06T11:30:55,437 package, please make sure that 'openpathsampling.tests.external_engine' is explicitly added 2024-01-06T11:30:55,438 to the `packages` configuration field. 2024-01-06T11:30:55,439 Alternatively, you can also rely on setuptools' discovery methods 2024-01-06T11:30:55,439 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-06T11:30:55,440 instead of `find_packages(...)`/`find:`). 2024-01-06T11:30:55,441 You can read more about "package discovery" on setuptools documentation page: 2024-01-06T11:30:55,442 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-06T11:30:55,443 If you don't want 'openpathsampling.tests.external_engine' to be distributed and are 2024-01-06T11:30:55,444 already explicitly excluding 'openpathsampling.tests.external_engine' via 2024-01-06T11:30:55,444 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-06T11:30:55,445 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-06T11:30:55,445 combination with a more fine grained `package-data` configuration. 2024-01-06T11:30:55,446 You can read more about "package data files" on setuptools documentation page: 2024-01-06T11:30:55,447 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-06T11:30:55,448 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-06T11:30:55,448 even if it does not contain any `.py` files. 2024-01-06T11:30:55,449 On the other hand, currently there is no concept of package data 2024-01-06T11:30:55,449 directory, all directories are treated like packages. 2024-01-06T11:30:55,450 ******************************************************************************** 2024-01-06T11:30:55,451 !! 2024-01-06T11:30:55,451 check.warn(importable) 2024-01-06T11:30:55,453 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'openpathsampling.tests.test_data' is absent from the `packages` configuration. 2024-01-06T11:30:55,455 !! 2024-01-06T11:30:55,457 ******************************************************************************** 2024-01-06T11:30:55,459 ############################ 2024-01-06T11:30:55,464 # Package would be ignored # 2024-01-06T11:30:55,466 ############################ 2024-01-06T11:30:55,467 Python recognizes 'openpathsampling.tests.test_data' as an importable package[^1], 2024-01-06T11:30:55,467 but it is absent from setuptools' `packages` configuration. 2024-01-06T11:30:55,469 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-06T11:30:55,469 package, please make sure that 'openpathsampling.tests.test_data' is explicitly added 2024-01-06T11:30:55,470 to the `packages` configuration field. 2024-01-06T11:30:55,471 Alternatively, you can also rely on setuptools' discovery methods 2024-01-06T11:30:55,472 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-06T11:30:55,472 instead of `find_packages(...)`/`find:`). 2024-01-06T11:30:55,473 You can read more about "package discovery" on setuptools documentation page: 2024-01-06T11:30:55,474 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-06T11:30:55,475 If you don't want 'openpathsampling.tests.test_data' to be distributed and are 2024-01-06T11:30:55,475 already explicitly excluding 'openpathsampling.tests.test_data' via 2024-01-06T11:30:55,476 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-06T11:30:55,477 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-06T11:30:55,477 combination with a more fine grained `package-data` configuration. 2024-01-06T11:30:55,478 You can read more about "package data files" on setuptools documentation page: 2024-01-06T11:30:55,479 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-06T11:30:55,481 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-06T11:30:55,481 even if it does not contain any `.py` files. 2024-01-06T11:30:55,482 On the other hand, currently there is no concept of package data 2024-01-06T11:30:55,482 directory, all directories are treated like packages. 2024-01-06T11:30:55,483 ******************************************************************************** 2024-01-06T11:30:55,484 !! 2024-01-06T11:30:55,485 check.warn(importable) 2024-01-06T11:30:55,485 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'openpathsampling.tests.test_data.apis' is absent from the `packages` configuration. 2024-01-06T11:30:55,485 !! 2024-01-06T11:30:55,486 ******************************************************************************** 2024-01-06T11:30:55,487 ############################ 2024-01-06T11:30:55,487 # Package would be ignored # 2024-01-06T11:30:55,488 ############################ 2024-01-06T11:30:55,488 Python recognizes 'openpathsampling.tests.test_data.apis' as an importable package[^1], 2024-01-06T11:30:55,489 but it is absent from setuptools' `packages` configuration. 2024-01-06T11:30:55,490 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-06T11:30:55,491 package, please make sure that 'openpathsampling.tests.test_data.apis' is explicitly added 2024-01-06T11:30:55,491 to the `packages` configuration field. 2024-01-06T11:30:55,492 Alternatively, you can also rely on setuptools' discovery methods 2024-01-06T11:30:55,492 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-06T11:30:55,493 instead of `find_packages(...)`/`find:`). 2024-01-06T11:30:55,494 You can read more about "package discovery" on setuptools documentation page: 2024-01-06T11:30:55,495 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-06T11:30:55,496 If you don't want 'openpathsampling.tests.test_data.apis' to be distributed and are 2024-01-06T11:30:55,496 already explicitly excluding 'openpathsampling.tests.test_data.apis' via 2024-01-06T11:30:55,497 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-06T11:30:55,497 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-06T11:30:55,498 combination with a more fine grained `package-data` configuration. 2024-01-06T11:30:55,499 You can read more about "package data files" on setuptools documentation page: 2024-01-06T11:30:55,500 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-06T11:30:55,501 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-06T11:30:55,502 even if it does not contain any `.py` files. 2024-01-06T11:30:55,502 On the other hand, currently there is no concept of package data 2024-01-06T11:30:55,503 directory, all directories are treated like packages. 2024-01-06T11:30:55,504 ******************************************************************************** 2024-01-06T11:30:55,505 !! 2024-01-06T11:30:55,505 check.warn(importable) 2024-01-06T11:30:55,506 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'openpathsampling.tests.test_data.gromacs_engine' is absent from the `packages` configuration. 2024-01-06T11:30:55,506 !! 2024-01-06T11:30:55,508 ******************************************************************************** 2024-01-06T11:30:55,508 ############################ 2024-01-06T11:30:55,509 # Package would be ignored # 2024-01-06T11:30:55,509 ############################ 2024-01-06T11:30:55,510 Python recognizes 'openpathsampling.tests.test_data.gromacs_engine' as an importable package[^1], 2024-01-06T11:30:55,511 but it is absent from setuptools' `packages` configuration. 2024-01-06T11:30:55,512 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-06T11:30:55,512 package, please make sure that 'openpathsampling.tests.test_data.gromacs_engine' is explicitly added 2024-01-06T11:30:55,513 to the `packages` configuration field. 2024-01-06T11:30:55,515 Alternatively, you can also rely on setuptools' discovery methods 2024-01-06T11:30:55,515 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-06T11:30:55,516 instead of `find_packages(...)`/`find:`). 2024-01-06T11:30:55,518 You can read more about "package discovery" on setuptools documentation page: 2024-01-06T11:30:55,519 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-06T11:30:55,521 If you don't want 'openpathsampling.tests.test_data.gromacs_engine' to be distributed and are 2024-01-06T11:30:55,521 already explicitly excluding 'openpathsampling.tests.test_data.gromacs_engine' via 2024-01-06T11:30:55,522 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-06T11:30:55,523 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-06T11:30:55,523 combination with a more fine grained `package-data` configuration. 2024-01-06T11:30:55,526 You can read more about "package data files" on setuptools documentation page: 2024-01-06T11:30:55,537 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-06T11:30:55,582 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-06T11:30:55,583 even if it does not contain any `.py` files. 2024-01-06T11:30:55,583 On the other hand, currently there is no concept of package data 2024-01-06T11:30:55,584 directory, all directories are treated like packages. 2024-01-06T11:30:55,584 ******************************************************************************** 2024-01-06T11:30:55,585 !! 2024-01-06T11:30:55,587 check.warn(importable) 2024-01-06T11:30:55,588 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'openpathsampling.tests.test_data.gromacs_engine.project_trr' is absent from the `packages` configuration. 2024-01-06T11:30:55,588 !! 2024-01-06T11:30:55,589 ******************************************************************************** 2024-01-06T11:30:55,590 ############################ 2024-01-06T11:30:55,591 # Package would be ignored # 2024-01-06T11:30:55,591 ############################ 2024-01-06T11:30:55,592 Python recognizes 'openpathsampling.tests.test_data.gromacs_engine.project_trr' as an importable package[^1], 2024-01-06T11:30:55,593 but it is absent from setuptools' `packages` configuration. 2024-01-06T11:30:55,594 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-06T11:30:55,595 package, please make sure that 'openpathsampling.tests.test_data.gromacs_engine.project_trr' is explicitly added 2024-01-06T11:30:55,595 to the `packages` configuration field. 2024-01-06T11:30:55,597 Alternatively, you can also rely on setuptools' discovery methods 2024-01-06T11:30:55,598 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-06T11:30:55,599 instead of `find_packages(...)`/`find:`). 2024-01-06T11:30:55,600 You can read more about "package discovery" on setuptools documentation page: 2024-01-06T11:30:55,602 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-06T11:30:55,603 If you don't want 'openpathsampling.tests.test_data.gromacs_engine.project_trr' to be distributed and are 2024-01-06T11:30:55,603 already explicitly excluding 'openpathsampling.tests.test_data.gromacs_engine.project_trr' via 2024-01-06T11:30:55,604 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-06T11:30:55,605 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-06T11:30:55,605 combination with a more fine grained `package-data` configuration. 2024-01-06T11:30:55,607 You can read more about "package data files" on setuptools documentation page: 2024-01-06T11:30:55,608 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-06T11:30:55,609 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-06T11:30:55,609 even if it does not contain any `.py` files. 2024-01-06T11:30:55,610 On the other hand, currently there is no concept of package data 2024-01-06T11:30:55,611 directory, all directories are treated like packages. 2024-01-06T11:30:55,611 ******************************************************************************** 2024-01-06T11:30:55,612 !! 2024-01-06T11:30:55,612 check.warn(importable) 2024-01-06T11:30:55,613 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'openpathsampling.tests.test_data.plumed_wrapper' is absent from the `packages` configuration. 2024-01-06T11:30:55,613 !! 2024-01-06T11:30:55,614 ******************************************************************************** 2024-01-06T11:30:55,615 ############################ 2024-01-06T11:30:55,615 # Package would be ignored # 2024-01-06T11:30:55,616 ############################ 2024-01-06T11:30:55,616 Python recognizes 'openpathsampling.tests.test_data.plumed_wrapper' as an importable package[^1], 2024-01-06T11:30:55,617 but it is absent from setuptools' `packages` configuration. 2024-01-06T11:30:55,617 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-06T11:30:55,618 package, please make sure that 'openpathsampling.tests.test_data.plumed_wrapper' is explicitly added 2024-01-06T11:30:55,619 to the `packages` configuration field. 2024-01-06T11:30:55,620 Alternatively, you can also rely on setuptools' discovery methods 2024-01-06T11:30:55,620 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-06T11:30:55,621 instead of `find_packages(...)`/`find:`). 2024-01-06T11:30:55,622 You can read more about "package discovery" on setuptools documentation page: 2024-01-06T11:30:55,623 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-06T11:30:55,624 If you don't want 'openpathsampling.tests.test_data.plumed_wrapper' to be distributed and are 2024-01-06T11:30:55,624 already explicitly excluding 'openpathsampling.tests.test_data.plumed_wrapper' via 2024-01-06T11:30:55,625 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-06T11:30:55,625 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-06T11:30:55,626 combination with a more fine grained `package-data` configuration. 2024-01-06T11:30:55,627 You can read more about "package data files" on setuptools documentation page: 2024-01-06T11:30:55,628 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-06T11:30:55,629 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-06T11:30:55,630 even if it does not contain any `.py` files. 2024-01-06T11:30:55,630 On the other hand, currently there is no concept of package data 2024-01-06T11:30:55,631 directory, all directories are treated like packages. 2024-01-06T11:30:55,631 ******************************************************************************** 2024-01-06T11:30:55,632 !! 2024-01-06T11:30:55,633 check.warn(importable) 2024-01-06T11:30:55,633 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'openpathsampling.tests.test_data.reduce_box_vects' is absent from the `packages` configuration. 2024-01-06T11:30:55,634 !! 2024-01-06T11:30:55,635 ******************************************************************************** 2024-01-06T11:30:55,635 ############################ 2024-01-06T11:30:55,636 # Package would be ignored # 2024-01-06T11:30:55,636 ############################ 2024-01-06T11:30:55,637 Python recognizes 'openpathsampling.tests.test_data.reduce_box_vects' as an importable package[^1], 2024-01-06T11:30:55,637 but it is absent from setuptools' `packages` configuration. 2024-01-06T11:30:55,638 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-06T11:30:55,638 package, please make sure that 'openpathsampling.tests.test_data.reduce_box_vects' is explicitly added 2024-01-06T11:30:55,639 to the `packages` configuration field. 2024-01-06T11:30:55,640 Alternatively, you can also rely on setuptools' discovery methods 2024-01-06T11:30:55,640 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-06T11:30:55,640 instead of `find_packages(...)`/`find:`). 2024-01-06T11:30:55,641 You can read more about "package discovery" on setuptools documentation page: 2024-01-06T11:30:55,642 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-06T11:30:55,643 If you don't want 'openpathsampling.tests.test_data.reduce_box_vects' to be distributed and are 2024-01-06T11:30:55,643 already explicitly excluding 'openpathsampling.tests.test_data.reduce_box_vects' via 2024-01-06T11:30:55,643 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-06T11:30:55,644 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-06T11:30:55,645 combination with a more fine grained `package-data` configuration. 2024-01-06T11:30:55,646 You can read more about "package data files" on setuptools documentation page: 2024-01-06T11:30:55,647 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-06T11:30:55,648 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-06T11:30:55,649 even if it does not contain any `.py` files. 2024-01-06T11:30:55,650 On the other hand, currently there is no concept of package data 2024-01-06T11:30:55,650 directory, all directories are treated like packages. 2024-01-06T11:30:55,651 ******************************************************************************** 2024-01-06T11:30:55,652 !! 2024-01-06T11:30:55,653 check.warn(importable) 2024-01-06T11:30:55,654 copying openpathsampling/.gitignore -> build/lib/openpathsampling 2024-01-06T11:30:55,655 copying openpathsampling/README.md -> build/lib/openpathsampling 2024-01-06T11:30:55,655 copying openpathsampling/logging.conf -> build/lib/openpathsampling 2024-01-06T11:30:55,656 creating build/lib/openpathsampling/resources 2024-01-06T11:30:55,657 copying openpathsampling/resources/debug_logging.conf -> build/lib/openpathsampling/resources 2024-01-06T11:30:55,658 copying openpathsampling/resources/engine_debug.conf -> build/lib/openpathsampling/resources 2024-01-06T11:30:55,658 copying openpathsampling/resources/logging.conf -> build/lib/openpathsampling/resources 2024-01-06T11:30:55,659 copying openpathsampling/resources/vis.css -> build/lib/openpathsampling/resources 2024-01-06T11:30:55,660 copying openpathsampling/tests/.gitignore -> build/lib/openpathsampling/tests 2024-01-06T11:30:55,660 creating build/lib/openpathsampling/tests/external_engine 2024-01-06T11:30:55,661 copying openpathsampling/tests/external_engine/Makefile -> build/lib/openpathsampling/tests/external_engine 2024-01-06T11:30:55,661 copying openpathsampling/tests/external_engine/engine.c -> build/lib/openpathsampling/tests/external_engine 2024-01-06T11:30:55,662 copying openpathsampling/tests/external_engine/microtest.py -> build/lib/openpathsampling/tests/external_engine 2024-01-06T11:30:55,663 creating build/lib/openpathsampling/tests/test_data 2024-01-06T11:30:55,664 copying openpathsampling/tests/test_data/ala_small_traj.pdb -> build/lib/openpathsampling/tests/test_data 2024-01-06T11:30:55,664 copying openpathsampling/tests/test_data/tip4p_water.pdb -> build/lib/openpathsampling/tests/test_data 2024-01-06T11:30:55,665 creating build/lib/openpathsampling/tests/test_data/apis 2024-01-06T11:30:55,666 copying openpathsampling/tests/test_data/apis/ops1x0_api.txt -> build/lib/openpathsampling/tests/test_data/apis 2024-01-06T11:30:55,666 creating build/lib/openpathsampling/tests/test_data/gromacs_engine 2024-01-06T11:30:55,667 copying openpathsampling/tests/test_data/gromacs_engine/conf.gro -> build/lib/openpathsampling/tests/test_data/gromacs_engine 2024-01-06T11:30:55,667 copying openpathsampling/tests/test_data/gromacs_engine/md.mdp -> build/lib/openpathsampling/tests/test_data/gromacs_engine 2024-01-06T11:30:55,668 copying openpathsampling/tests/test_data/gromacs_engine/topol.top -> build/lib/openpathsampling/tests/test_data/gromacs_engine 2024-01-06T11:30:55,669 copying openpathsampling/tests/test_data/gromacs_engine/traj.trr -> build/lib/openpathsampling/tests/test_data/gromacs_engine 2024-01-06T11:30:55,669 creating build/lib/openpathsampling/tests/test_data/gromacs_engine/project_trr 2024-01-06T11:30:55,670 copying openpathsampling/tests/test_data/gromacs_engine/project_trr/0000000.trr -> build/lib/openpathsampling/tests/test_data/gromacs_engine/project_trr 2024-01-06T11:30:55,671 copying openpathsampling/tests/test_data/gromacs_engine/project_trr/0000099.trr -> build/lib/openpathsampling/tests/test_data/gromacs_engine/project_trr 2024-01-06T11:30:55,672 creating build/lib/openpathsampling/tests/test_data/plumed_wrapper 2024-01-06T11:30:55,672 copying openpathsampling/tests/test_data/plumed_wrapper/AD_initial_frame.pdb -> build/lib/openpathsampling/tests/test_data/plumed_wrapper 2024-01-06T11:30:55,673 copying openpathsampling/tests/test_data/plumed_wrapper/AD_plumed_rmsd.pdb -> build/lib/openpathsampling/tests/test_data/plumed_wrapper 2024-01-06T11:30:55,674 creating build/lib/openpathsampling/tests/test_data/reduce_box_vects 2024-01-06T11:30:55,675 copying openpathsampling/tests/test_data/reduce_box_vects/dna.gro -> build/lib/openpathsampling/tests/test_data/reduce_box_vects 2024-01-06T11:30:55,675 copying openpathsampling/tests/test_data/reduce_box_vects/dna.trr -> build/lib/openpathsampling/tests/test_data/reduce_box_vects 2024-01-06T11:30:55,676 copying openpathsampling/pathmovers/README.md -> build/lib/openpathsampling/pathmovers 2024-01-06T11:30:55,677 copying openpathsampling/experimental/README.md -> build/lib/openpathsampling/experimental 2024-01-06T11:30:55,678 copying openpathsampling/collectivevariables/README.md -> build/lib/openpathsampling/collectivevariables 2024-01-06T11:30:55,678 copying openpathsampling/ensembles/README.md -> build/lib/openpathsampling/ensembles 2024-01-06T11:30:55,679 copying openpathsampling/analysis/.gitignore -> build/lib/openpathsampling/analysis 2024-01-06T11:30:55,680 creating build/lib/openpathsampling/experimental/simstore/regressions 2024-01-06T11:30:55,681 copying openpathsampling/experimental/simstore/regressions/README.md -> build/lib/openpathsampling/experimental/simstore/regressions 2024-01-06T11:30:55,682 copying openpathsampling/experimental/simstore/regressions/test_numpy_sfrs.py -> build/lib/openpathsampling/experimental/simstore/regressions 2024-01-06T11:30:55,683 copying openpathsampling/engines/external_snapshots/README.md -> build/lib/openpathsampling/engines/external_snapshots 2024-01-06T11:30:55,684 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-01-06T11:30:55,685 !! 2024-01-06T11:30:55,687 ******************************************************************************** 2024-01-06T11:30:55,688 Please avoid running ``setup.py`` directly. 2024-01-06T11:30:55,690 Instead, use pypa/build, pypa/installer or other 2024-01-06T11:30:55,691 standards-based tools. 2024-01-06T11:30:55,693 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-01-06T11:30:55,693 ******************************************************************************** 2024-01-06T11:30:55,694 !! 2024-01-06T11:30:55,694 self.initialize_options() 2024-01-06T11:30:55,712 installing to build/bdist.linux-armv7l/wheel 2024-01-06T11:30:55,712 running install 2024-01-06T11:30:55,736 running install_lib 2024-01-06T11:30:55,766 creating build/bdist.linux-armv7l 2024-01-06T11:30:55,766 creating build/bdist.linux-armv7l/wheel 2024-01-06T11:30:55,768 creating build/bdist.linux-armv7l/wheel/openpathsampling 2024-01-06T11:30:55,770 copying build/lib/openpathsampling/movechange.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-01-06T11:30:55,774 creating build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:55,775 copying build/lib/openpathsampling/tests/test_plumed_wrapper.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:55,777 copying build/lib/openpathsampling/tests/test_attribute.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:55,780 copying build/lib/openpathsampling/tests/test_visit_all_states.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:55,785 copying build/lib/openpathsampling/tests/test_openmm_engine.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:55,788 copying build/lib/openpathsampling/tests/test_transitions.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:55,790 copying build/lib/openpathsampling/tests/test_rng.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:55,792 copying build/lib/openpathsampling/tests/test_storage.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:55,795 copying build/lib/openpathsampling/tests/test_netcdfplus_base.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:55,797 copying build/lib/openpathsampling/tests/test_collectivevariable.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:55,799 copying build/lib/openpathsampling/tests/test_bias_function.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:55,802 copying build/lib/openpathsampling/tests/test_external_snapshots.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:55,805 copying build/lib/openpathsampling/tests/test_ms_outer_interface.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:55,807 copying build/lib/openpathsampling/tests/test_channel_analysis.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:55,809 copying build/lib/openpathsampling/tests/test_integration_tools.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:55,811 copying build/lib/openpathsampling/tests/test_wham.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:55,814 copying build/lib/openpathsampling/tests/test_openmm_snapshot.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:55,816 creating build/bdist.linux-armv7l/wheel/openpathsampling/tests/external_engine 2024-01-06T11:30:55,818 copying build/lib/openpathsampling/tests/external_engine/microtest.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/external_engine 2024-01-06T11:30:55,820 copying build/lib/openpathsampling/tests/external_engine/engine.c -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/external_engine 2024-01-06T11:30:55,822 copying build/lib/openpathsampling/tests/external_engine/Makefile -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/external_engine 2024-01-06T11:30:55,824 copying build/lib/openpathsampling/tests/test_snapshot.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:55,826 copying build/lib/openpathsampling/tests/test_features.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:55,828 copying build/lib/openpathsampling/tests/test_volume.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:55,830 copying build/lib/openpathsampling/tests/test_range_logic.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:55,833 copying build/lib/openpathsampling/tests/test_shared.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:55,835 copying build/lib/openpathsampling/tests/test_resampling_statistics.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:55,837 copying build/lib/openpathsampling/tests/test_pathmover.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:55,841 copying build/lib/openpathsampling/tests/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:55,843 copying build/lib/openpathsampling/tests/test_dynamicsengine.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:55,846 copying build/lib/openpathsampling/tests/test_toy_features.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:55,848 creating build/bdist.linux-armv7l/wheel/openpathsampling/tests/test_data 2024-01-06T11:30:55,850 creating build/bdist.linux-armv7l/wheel/openpathsampling/tests/test_data/plumed_wrapper 2024-01-06T11:30:55,851 copying build/lib/openpathsampling/tests/test_data/plumed_wrapper/AD_initial_frame.pdb -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/test_data/plumed_wrapper 2024-01-06T11:30:55,858 copying build/lib/openpathsampling/tests/test_data/plumed_wrapper/AD_plumed_rmsd.pdb -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/test_data/plumed_wrapper 2024-01-06T11:30:55,860 copying build/lib/openpathsampling/tests/test_data/ala_small_traj.pdb -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/test_data 2024-01-06T11:30:55,929 creating build/bdist.linux-armv7l/wheel/openpathsampling/tests/test_data/gromacs_engine 2024-01-06T11:30:55,931 copying build/lib/openpathsampling/tests/test_data/gromacs_engine/topol.top -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/test_data/gromacs_engine 2024-01-06T11:30:55,934 creating build/bdist.linux-armv7l/wheel/openpathsampling/tests/test_data/gromacs_engine/project_trr 2024-01-06T11:30:55,935 copying build/lib/openpathsampling/tests/test_data/gromacs_engine/project_trr/0000099.trr -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/test_data/gromacs_engine/project_trr 2024-01-06T11:30:55,976 copying build/lib/openpathsampling/tests/test_data/gromacs_engine/project_trr/0000000.trr -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/test_data/gromacs_engine/project_trr 2024-01-06T11:30:55,981 copying build/lib/openpathsampling/tests/test_data/gromacs_engine/conf.gro -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/test_data/gromacs_engine 2024-01-06T11:30:55,984 copying build/lib/openpathsampling/tests/test_data/gromacs_engine/md.mdp -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/test_data/gromacs_engine 2024-01-06T11:30:55,986 copying build/lib/openpathsampling/tests/test_data/gromacs_engine/traj.trr -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/test_data/gromacs_engine 2024-01-06T11:30:55,992 creating build/bdist.linux-armv7l/wheel/openpathsampling/tests/test_data/apis 2024-01-06T11:30:55,993 copying build/lib/openpathsampling/tests/test_data/apis/ops1x0_api.txt -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/test_data/apis 2024-01-06T11:30:55,996 creating build/bdist.linux-armv7l/wheel/openpathsampling/tests/test_data/reduce_box_vects 2024-01-06T11:30:55,997 copying build/lib/openpathsampling/tests/test_data/reduce_box_vects/dna.trr -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/test_data/reduce_box_vects 2024-01-06T11:30:56,000 copying build/lib/openpathsampling/tests/test_data/reduce_box_vects/dna.gro -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/test_data/reduce_box_vects 2024-01-06T11:30:56,003 copying build/lib/openpathsampling/tests/test_data/tip4p_water.pdb -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/test_data 2024-01-06T11:30:56,005 copying build/lib/openpathsampling/tests/test_path_histogram.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:56,007 copying build/lib/openpathsampling/tests/test_openmm_tools.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:56,009 copying build/lib/openpathsampling/tests/test_spring_shooting.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:56,011 copying build/lib/openpathsampling/tests/test_histogram.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:56,013 copying build/lib/openpathsampling/tests/test_mdtraj_support.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:56,015 copying build/lib/openpathsampling/tests/test_tools.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:56,017 copying build/lib/openpathsampling/tests/test_ensemble.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:56,021 copying build/lib/openpathsampling/tests/test_external_engine.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:56,023 copying build/lib/openpathsampling/tests/test_sample.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:56,026 creating build/bdist.linux-armv7l/wheel/openpathsampling/tests/analysis 2024-01-06T11:30:56,028 creating build/bdist.linux-armv7l/wheel/openpathsampling/tests/analysis/utils 2024-01-06T11:30:56,029 copying build/lib/openpathsampling/tests/analysis/utils/fixture_classes.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/analysis/utils 2024-01-06T11:30:56,032 copying build/lib/openpathsampling/tests/analysis/utils/test_fixture_classes.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/analysis/utils 2024-01-06T11:30:56,034 copying build/lib/openpathsampling/tests/analysis/utils/test_mock_movers.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/analysis/utils 2024-01-06T11:30:56,037 copying build/lib/openpathsampling/tests/analysis/utils/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/analysis/utils 2024-01-06T11:30:56,038 copying build/lib/openpathsampling/tests/analysis/utils/mock_movers.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/analysis/utils 2024-01-06T11:30:56,041 copying build/lib/openpathsampling/tests/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/analysis 2024-01-06T11:30:56,043 copying build/lib/openpathsampling/tests/analysis/conftest.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/analysis 2024-01-06T11:30:56,045 copying build/lib/openpathsampling/tests/test_sshooting_analysis.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:56,047 copying build/lib/openpathsampling/tests/test_progress.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:56,049 copying build/lib/openpathsampling/tests/test_interface_set.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:56,052 copying build/lib/openpathsampling/tests/test_shooting.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:56,054 copying build/lib/openpathsampling/tests/test_pyemma_cv.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:56,057 copying build/lib/openpathsampling/tests/test_lookup_function.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:56,059 copying build/lib/openpathsampling/tests/test_api.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:56,061 copying build/lib/openpathsampling/tests/test_sshooting_simulator.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:56,064 copying build/lib/openpathsampling/tests/test_trajectory.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:56,066 copying build/lib/openpathsampling/tests/test_reactive_flux_analysis.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:56,069 copying build/lib/openpathsampling/tests/test_pathsimulator.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:56,072 copying build/lib/openpathsampling/tests/test_deprecations.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:56,074 copying build/lib/openpathsampling/tests/test_network.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:56,077 copying build/lib/openpathsampling/tests/test_shooting_point_analysis.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:56,080 copying build/lib/openpathsampling/tests/test_tis_analysis.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:56,083 copying build/lib/openpathsampling/tests/test_snapshot_modifier.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:56,085 copying build/lib/openpathsampling/tests/.gitignore -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:56,087 copying build/lib/openpathsampling/tests/test_movestrategy.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:56,091 copying build/lib/openpathsampling/tests/test_movescheme.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:56,094 creating build/bdist.linux-armv7l/wheel/openpathsampling/tests/pathsimulators 2024-01-06T11:30:56,096 copying build/lib/openpathsampling/tests/pathsimulators/test_hooks.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/pathsimulators 2024-01-06T11:30:56,098 copying build/lib/openpathsampling/tests/pathsimulators/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/pathsimulators 2024-01-06T11:30:56,100 copying build/lib/openpathsampling/tests/test_toy_dynamics.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:56,103 copying build/lib/openpathsampling/tests/test_gromacs_engine.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:56,105 copying build/lib/openpathsampling/tests/test_part_in_b_tps.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:56,108 copying build/lib/openpathsampling/tests/test_trajectory_transition_analysis.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:56,110 copying build/lib/openpathsampling/tests/test_helpers.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-01-06T11:30:56,112 copying build/lib/openpathsampling/shooting.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-01-06T11:30:56,114 creating build/bdist.linux-armv7l/wheel/openpathsampling/high_level 2024-01-06T11:30:56,115 copying build/lib/openpathsampling/high_level/move_strategy.py -> build/bdist.linux-armv7l/wheel/openpathsampling/high_level 2024-01-06T11:30:56,118 copying build/lib/openpathsampling/high_level/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/high_level 2024-01-06T11:30:56,120 copying build/lib/openpathsampling/high_level/network.py -> build/bdist.linux-armv7l/wheel/openpathsampling/high_level 2024-01-06T11:30:56,123 copying build/lib/openpathsampling/high_level/part_in_b_tps.py -> build/bdist.linux-armv7l/wheel/openpathsampling/high_level 2024-01-06T11:30:56,125 copying build/lib/openpathsampling/high_level/transition.py -> build/bdist.linux-armv7l/wheel/openpathsampling/high_level 2024-01-06T11:30:56,128 copying build/lib/openpathsampling/high_level/move_scheme.py -> build/bdist.linux-armv7l/wheel/openpathsampling/high_level 2024-01-06T11:30:56,131 copying build/lib/openpathsampling/high_level/interface_set.py -> build/bdist.linux-armv7l/wheel/openpathsampling/high_level 2024-01-06T11:30:56,133 copying build/lib/openpathsampling/high_level/ms_outer_interface.py -> build/bdist.linux-armv7l/wheel/openpathsampling/high_level 2024-01-06T11:30:56,135 copying build/lib/openpathsampling/collectivevariable.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-01-06T11:30:56,138 creating build/bdist.linux-armv7l/wheel/openpathsampling/pathmovers 2024-01-06T11:30:56,139 copying build/lib/openpathsampling/pathmovers/move_schemes.py -> build/bdist.linux-armv7l/wheel/openpathsampling/pathmovers 2024-01-06T11:30:56,141 copying build/lib/openpathsampling/pathmovers/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/pathmovers 2024-01-06T11:30:56,143 copying build/lib/openpathsampling/pathmovers/spring_shooting.py -> build/bdist.linux-armv7l/wheel/openpathsampling/pathmovers 2024-01-06T11:30:56,145 copying build/lib/openpathsampling/pathmovers/move_strategies.py -> build/bdist.linux-armv7l/wheel/openpathsampling/pathmovers 2024-01-06T11:30:56,147 copying build/lib/openpathsampling/pathmovers/README.md -> build/bdist.linux-armv7l/wheel/openpathsampling/pathmovers 2024-01-06T11:30:56,148 copying build/lib/openpathsampling/version.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-01-06T11:30:56,151 creating build/bdist.linux-armv7l/wheel/openpathsampling/experimental 2024-01-06T11:30:56,152 creating build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-01-06T11:30:56,153 copying build/lib/openpathsampling/experimental/simstore/test_dict_serialization_helpers.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-01-06T11:30:56,155 copying build/lib/openpathsampling/experimental/simstore/test_storable_function_integration.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-01-06T11:30:56,157 copying build/lib/openpathsampling/experimental/simstore/callable_codec.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-01-06T11:30:56,159 copying build/lib/openpathsampling/experimental/simstore/test_storage.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-01-06T11:30:56,162 copying build/lib/openpathsampling/experimental/simstore/test_class_info.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-01-06T11:30:56,164 copying build/lib/openpathsampling/experimental/simstore/storable_functions.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-01-06T11:30:56,166 copying build/lib/openpathsampling/experimental/simstore/test_custom_json.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-01-06T11:30:56,169 creating build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore/regressions 2024-01-06T11:30:56,170 copying build/lib/openpathsampling/experimental/simstore/regressions/test_numpy_sfrs.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore/regressions 2024-01-06T11:30:56,172 copying build/lib/openpathsampling/experimental/simstore/regressions/README.md -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore/regressions 2024-01-06T11:30:56,174 copying build/lib/openpathsampling/experimental/simstore/uuids.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-01-06T11:30:56,176 copying build/lib/openpathsampling/experimental/simstore/test_storable_function.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-01-06T11:30:56,178 copying build/lib/openpathsampling/experimental/simstore/test_serialization.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-01-06T11:30:56,181 copying build/lib/openpathsampling/experimental/simstore/serialization.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-01-06T11:30:56,183 copying build/lib/openpathsampling/experimental/simstore/class_info.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-01-06T11:30:56,185 copying build/lib/openpathsampling/experimental/simstore/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-01-06T11:30:56,187 copying build/lib/openpathsampling/experimental/simstore/storage.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-01-06T11:30:56,190 copying build/lib/openpathsampling/experimental/simstore/test_serialization_helpers.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-01-06T11:30:56,192 copying build/lib/openpathsampling/experimental/simstore/sql_backend.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-01-06T11:30:56,195 copying build/lib/openpathsampling/experimental/simstore/attribute_handlers.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-01-06T11:30:56,197 copying build/lib/openpathsampling/experimental/simstore/serialization_helpers.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-01-06T11:30:56,199 copying build/lib/openpathsampling/experimental/simstore/tools.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-01-06T11:30:56,201 copying build/lib/openpathsampling/experimental/simstore/test_backend.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-01-06T11:30:56,203 copying build/lib/openpathsampling/experimental/simstore/backend.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-01-06T11:30:56,204 copying build/lib/openpathsampling/experimental/simstore/test_tools.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-01-06T11:30:56,206 copying build/lib/openpathsampling/experimental/simstore/my_types.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-01-06T11:30:56,208 copying build/lib/openpathsampling/experimental/simstore/wrapper.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-01-06T11:30:56,210 copying build/lib/openpathsampling/experimental/simstore/memory_backend.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-01-06T11:30:56,212 copying build/lib/openpathsampling/experimental/simstore/custom_json.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-01-06T11:30:56,214 copying build/lib/openpathsampling/experimental/simstore/test_type_ident.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-01-06T11:30:56,216 copying build/lib/openpathsampling/experimental/simstore/test_sql_backend.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-01-06T11:30:56,218 copying build/lib/openpathsampling/experimental/simstore/test_tags_table.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-01-06T11:30:56,220 copying build/lib/openpathsampling/experimental/simstore/proxy.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-01-06T11:30:56,222 copying build/lib/openpathsampling/experimental/simstore/type_ident.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-01-06T11:30:56,224 copying build/lib/openpathsampling/experimental/simstore/test_attribute_handlers.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-01-06T11:30:56,226 copying build/lib/openpathsampling/experimental/simstore/class_lookup.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-01-06T11:30:56,228 copying build/lib/openpathsampling/experimental/simstore/tags_table.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-01-06T11:30:56,230 copying build/lib/openpathsampling/experimental/simstore/test_utils.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-01-06T11:30:56,232 copying build/lib/openpathsampling/experimental/simstore/test_callable_codec.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-01-06T11:30:56,234 copying build/lib/openpathsampling/experimental/simstore/dict_serialization_helpers.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-01-06T11:30:56,236 copying build/lib/openpathsampling/experimental/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental 2024-01-06T11:30:56,238 creating build/bdist.linux-armv7l/wheel/openpathsampling/experimental/storage 2024-01-06T11:30:56,239 copying build/lib/openpathsampling/experimental/storage/test_snapshot_integrations.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/storage 2024-01-06T11:30:56,241 copying build/lib/openpathsampling/experimental/storage/test_pathsampling.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/storage 2024-01-06T11:30:56,243 copying build/lib/openpathsampling/experimental/storage/test_simtk_unit.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/storage 2024-01-06T11:30:56,245 copying build/lib/openpathsampling/experimental/storage/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/storage 2024-01-06T11:30:56,247 copying build/lib/openpathsampling/experimental/storage/test_snapshots_table.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/storage 2024-01-06T11:30:56,248 copying build/lib/openpathsampling/experimental/storage/monkey_patches.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/storage 2024-01-06T11:30:56,250 copying build/lib/openpathsampling/experimental/storage/snapshots_table.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/storage 2024-01-06T11:30:56,252 copying build/lib/openpathsampling/experimental/storage/collective_variables.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/storage 2024-01-06T11:30:56,254 copying build/lib/openpathsampling/experimental/storage/simtk_unit.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/storage 2024-01-06T11:30:56,256 copying build/lib/openpathsampling/experimental/storage/ops_storage.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/storage 2024-01-06T11:30:56,258 copying build/lib/openpathsampling/experimental/storage/test_collective_variables.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/storage 2024-01-06T11:30:56,260 copying build/lib/openpathsampling/experimental/storage/snapshots.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/storage 2024-01-06T11:30:56,263 copying build/lib/openpathsampling/experimental/storage/mdtraj_json.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/storage 2024-01-06T11:30:56,264 copying build/lib/openpathsampling/experimental/storage/test_snapshots.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/storage 2024-01-06T11:30:56,266 copying build/lib/openpathsampling/experimental/storage/test_regressions.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/storage 2024-01-06T11:30:56,268 copying build/lib/openpathsampling/experimental/storage/test_monkey_patches.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/storage 2024-01-06T11:30:56,270 copying build/lib/openpathsampling/experimental/storage/test_mdtraj_json.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/storage 2024-01-06T11:30:56,272 copying build/lib/openpathsampling/experimental/README.md -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental 2024-01-06T11:30:56,275 creating build/bdist.linux-armv7l/wheel/openpathsampling/collectivevariables 2024-01-06T11:30:56,275 copying build/lib/openpathsampling/collectivevariables/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/collectivevariables 2024-01-06T11:30:56,277 copying build/lib/openpathsampling/collectivevariables/README.md -> build/bdist.linux-armv7l/wheel/openpathsampling/collectivevariables 2024-01-06T11:30:56,280 copying build/lib/openpathsampling/collectivevariables/plumed_wrapper.py -> build/bdist.linux-armv7l/wheel/openpathsampling/collectivevariables 2024-01-06T11:30:56,282 copying build/lib/openpathsampling/logging.conf -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-01-06T11:30:56,284 copying build/lib/openpathsampling/visualize.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-01-06T11:30:56,288 copying build/lib/openpathsampling/step_visualizer_2D.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-01-06T11:30:56,290 copying build/lib/openpathsampling/sample.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-01-06T11:30:56,293 creating build/bdist.linux-armv7l/wheel/openpathsampling/ensembles 2024-01-06T11:30:56,294 copying build/lib/openpathsampling/ensembles/visit_all_states.py -> build/bdist.linux-armv7l/wheel/openpathsampling/ensembles 2024-01-06T11:30:56,296 copying build/lib/openpathsampling/ensembles/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/ensembles 2024-01-06T11:30:56,298 copying build/lib/openpathsampling/ensembles/README.md -> build/bdist.linux-armv7l/wheel/openpathsampling/ensembles 2024-01-06T11:30:56,299 copying build/lib/openpathsampling/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-01-06T11:30:56,301 copying build/lib/openpathsampling/deprecations.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-01-06T11:30:56,304 copying build/lib/openpathsampling/snapshot_modifier.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-01-06T11:30:56,306 copying build/lib/openpathsampling/bias_function.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-01-06T11:30:56,310 creating build/bdist.linux-armv7l/wheel/openpathsampling/storage 2024-01-06T11:30:56,311 copying build/lib/openpathsampling/storage/distributed.py -> build/bdist.linux-armv7l/wheel/openpathsampling/storage 2024-01-06T11:30:56,313 copying build/lib/openpathsampling/storage/util.py -> build/bdist.linux-armv7l/wheel/openpathsampling/storage 2024-01-06T11:30:56,315 copying build/lib/openpathsampling/storage/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/storage 2024-01-06T11:30:56,317 copying build/lib/openpathsampling/storage/storage.py -> build/bdist.linux-armv7l/wheel/openpathsampling/storage 2024-01-06T11:30:56,320 creating build/bdist.linux-armv7l/wheel/openpathsampling/storage/stores 2024-01-06T11:30:56,321 copying build/lib/openpathsampling/storage/stores/movechange.py -> build/bdist.linux-armv7l/wheel/openpathsampling/storage/stores 2024-01-06T11:30:56,323 copying build/lib/openpathsampling/storage/stores/snapshot_wrapper.py -> build/bdist.linux-armv7l/wheel/openpathsampling/storage/stores 2024-01-06T11:30:56,325 copying build/lib/openpathsampling/storage/stores/collectivevariable.py -> build/bdist.linux-armv7l/wheel/openpathsampling/storage/stores 2024-01-06T11:30:56,327 copying build/lib/openpathsampling/storage/stores/snapshot_feature.py -> build/bdist.linux-armv7l/wheel/openpathsampling/storage/stores 2024-01-06T11:30:56,329 copying build/lib/openpathsampling/storage/stores/snapshot_base.py -> build/bdist.linux-armv7l/wheel/openpathsampling/storage/stores 2024-01-06T11:30:56,331 copying build/lib/openpathsampling/storage/stores/trajectory.py -> build/bdist.linux-armv7l/wheel/openpathsampling/storage/stores 2024-01-06T11:30:56,333 copying build/lib/openpathsampling/storage/stores/mcstep.py -> build/bdist.linux-armv7l/wheel/openpathsampling/storage/stores 2024-01-06T11:30:56,334 copying build/lib/openpathsampling/storage/stores/snapshot_value.py -> build/bdist.linux-armv7l/wheel/openpathsampling/storage/stores 2024-01-06T11:30:56,336 copying build/lib/openpathsampling/storage/stores/sample.py -> build/bdist.linux-armv7l/wheel/openpathsampling/storage/stores 2024-01-06T11:30:56,338 copying build/lib/openpathsampling/storage/stores/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/storage/stores 2024-01-06T11:30:56,340 copying build/lib/openpathsampling/storage/stores/pathsimulator.py -> build/bdist.linux-armv7l/wheel/openpathsampling/storage/stores 2024-01-06T11:30:56,342 copying build/lib/openpathsampling/tools.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-01-06T11:30:56,345 copying build/lib/openpathsampling/pathmover.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-01-06T11:30:56,348 creating build/bdist.linux-armv7l/wheel/openpathsampling/beta 2024-01-06T11:30:56,349 copying build/lib/openpathsampling/beta/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/beta 2024-01-06T11:30:56,351 copying build/lib/openpathsampling/beta/hooks.py -> build/bdist.linux-armv7l/wheel/openpathsampling/beta 2024-01-06T11:30:56,354 creating build/bdist.linux-armv7l/wheel/openpathsampling/resources 2024-01-06T11:30:56,355 copying build/lib/openpathsampling/resources/logging.conf -> build/bdist.linux-armv7l/wheel/openpathsampling/resources 2024-01-06T11:30:56,356 copying build/lib/openpathsampling/resources/vis.css -> build/bdist.linux-armv7l/wheel/openpathsampling/resources 2024-01-06T11:30:56,358 copying build/lib/openpathsampling/resources/debug_logging.conf -> build/bdist.linux-armv7l/wheel/openpathsampling/resources 2024-01-06T11:30:56,360 copying build/lib/openpathsampling/resources/engine_debug.conf -> build/bdist.linux-armv7l/wheel/openpathsampling/resources 2024-01-06T11:30:56,362 copying build/lib/openpathsampling/integration_tools.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-01-06T11:30:56,363 copying build/lib/openpathsampling/rng.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-01-06T11:30:56,366 creating build/bdist.linux-armv7l/wheel/openpathsampling/analysis 2024-01-06T11:30:56,367 creating build/bdist.linux-armv7l/wheel/openpathsampling/analysis/tis 2024-01-06T11:30:56,368 copying build/lib/openpathsampling/analysis/tis/crossing_probability.py -> build/bdist.linux-armv7l/wheel/openpathsampling/analysis/tis 2024-01-06T11:30:56,370 copying build/lib/openpathsampling/analysis/tis/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/analysis/tis 2024-01-06T11:30:56,372 copying build/lib/openpathsampling/analysis/tis/core.py -> build/bdist.linux-armv7l/wheel/openpathsampling/analysis/tis 2024-01-06T11:30:56,375 copying build/lib/openpathsampling/analysis/tis/flux.py -> build/bdist.linux-armv7l/wheel/openpathsampling/analysis/tis 2024-01-06T11:30:56,377 copying build/lib/openpathsampling/analysis/tis/misc.py -> build/bdist.linux-armv7l/wheel/openpathsampling/analysis/tis 2024-01-06T11:30:56,379 copying build/lib/openpathsampling/analysis/tis/standard_analysis.py -> build/bdist.linux-armv7l/wheel/openpathsampling/analysis/tis 2024-01-06T11:30:56,381 copying build/lib/openpathsampling/analysis/shooting_point_analysis.py -> build/bdist.linux-armv7l/wheel/openpathsampling/analysis 2024-01-06T11:30:56,384 copying build/lib/openpathsampling/analysis/path_histogram.py -> build/bdist.linux-armv7l/wheel/openpathsampling/analysis 2024-01-06T11:30:56,386 copying build/lib/openpathsampling/analysis/trajectory_transition_analysis.py -> build/bdist.linux-armv7l/wheel/openpathsampling/analysis 2024-01-06T11:30:56,389 copying build/lib/openpathsampling/analysis/replica_network.py -> build/bdist.linux-armv7l/wheel/openpathsampling/analysis 2024-01-06T11:30:56,391 copying build/lib/openpathsampling/analysis/channel_analysis.py -> build/bdist.linux-armv7l/wheel/openpathsampling/analysis 2024-01-06T11:30:56,394 copying build/lib/openpathsampling/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/analysis 2024-01-06T11:30:56,396 copying build/lib/openpathsampling/analysis/tools.py -> build/bdist.linux-armv7l/wheel/openpathsampling/analysis 2024-01-06T11:30:56,398 copying build/lib/openpathsampling/analysis/sshooting_analysis.py -> build/bdist.linux-armv7l/wheel/openpathsampling/analysis 2024-01-06T11:30:56,400 copying build/lib/openpathsampling/analysis/.gitignore -> build/bdist.linux-armv7l/wheel/openpathsampling/analysis 2024-01-06T11:30:56,402 copying build/lib/openpathsampling/analysis/ensemble_representation.py -> build/bdist.linux-armv7l/wheel/openpathsampling/analysis 2024-01-06T11:30:56,403 copying build/lib/openpathsampling/analysis/reactive_flux_analysis.py -> build/bdist.linux-armv7l/wheel/openpathsampling/analysis 2024-01-06T11:30:56,406 creating build/bdist.linux-armv7l/wheel/openpathsampling/strategies 2024-01-06T11:30:56,407 copying build/lib/openpathsampling/strategies/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/strategies 2024-01-06T11:30:56,409 copying build/lib/openpathsampling/treelogic.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-01-06T11:30:56,411 copying build/lib/openpathsampling/README.md -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-01-06T11:30:56,413 copying build/lib/openpathsampling/volume.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-01-06T11:30:56,415 copying build/lib/openpathsampling/range_logic.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-01-06T11:30:56,418 creating build/bdist.linux-armv7l/wheel/openpathsampling/netcdfplus 2024-01-06T11:30:56,419 copying build/lib/openpathsampling/netcdfplus/base.py -> build/bdist.linux-armv7l/wheel/openpathsampling/netcdfplus 2024-01-06T11:30:56,421 copying build/lib/openpathsampling/netcdfplus/version.py -> build/bdist.linux-armv7l/wheel/openpathsampling/netcdfplus 2024-01-06T11:30:56,423 copying build/lib/openpathsampling/netcdfplus/cache.py -> build/bdist.linux-armv7l/wheel/openpathsampling/netcdfplus 2024-01-06T11:30:56,425 copying build/lib/openpathsampling/netcdfplus/util.py -> build/bdist.linux-armv7l/wheel/openpathsampling/netcdfplus 2024-01-06T11:30:56,427 copying build/lib/openpathsampling/netcdfplus/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/netcdfplus 2024-01-06T11:30:56,429 copying build/lib/openpathsampling/netcdfplus/attribute.py -> build/bdist.linux-armv7l/wheel/openpathsampling/netcdfplus 2024-01-06T11:30:56,432 creating build/bdist.linux-armv7l/wheel/openpathsampling/netcdfplus/stores 2024-01-06T11:30:56,433 copying build/lib/openpathsampling/netcdfplus/stores/object.py -> build/bdist.linux-armv7l/wheel/openpathsampling/netcdfplus/stores 2024-01-06T11:30:56,436 copying build/lib/openpathsampling/netcdfplus/stores/dict.py -> build/bdist.linux-armv7l/wheel/openpathsampling/netcdfplus/stores 2024-01-06T11:30:56,438 copying build/lib/openpathsampling/netcdfplus/stores/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/netcdfplus/stores 2024-01-06T11:30:56,439 copying build/lib/openpathsampling/netcdfplus/stores/attribute.py -> build/bdist.linux-armv7l/wheel/openpathsampling/netcdfplus/stores 2024-01-06T11:30:56,441 copying build/lib/openpathsampling/netcdfplus/stores/named.py -> build/bdist.linux-armv7l/wheel/openpathsampling/netcdfplus/stores 2024-01-06T11:30:56,445 copying build/lib/openpathsampling/netcdfplus/stores/variable.py -> build/bdist.linux-armv7l/wheel/openpathsampling/netcdfplus/stores 2024-01-06T11:30:56,448 copying build/lib/openpathsampling/netcdfplus/stores/indexed.py -> build/bdist.linux-armv7l/wheel/openpathsampling/netcdfplus/stores 2024-01-06T11:30:56,450 copying build/lib/openpathsampling/netcdfplus/stores/value.py -> build/bdist.linux-armv7l/wheel/openpathsampling/netcdfplus/stores 2024-01-06T11:30:56,453 copying build/lib/openpathsampling/netcdfplus/dictify.py -> build/bdist.linux-armv7l/wheel/openpathsampling/netcdfplus 2024-01-06T11:30:56,456 copying build/lib/openpathsampling/netcdfplus/proxy.py -> build/bdist.linux-armv7l/wheel/openpathsampling/netcdfplus 2024-01-06T11:30:56,459 copying build/lib/openpathsampling/netcdfplus/chaindict.py -> build/bdist.linux-armv7l/wheel/openpathsampling/netcdfplus 2024-01-06T11:30:56,462 copying build/lib/openpathsampling/netcdfplus/netcdfplus.py -> build/bdist.linux-armv7l/wheel/openpathsampling/netcdfplus 2024-01-06T11:30:56,465 copying build/lib/openpathsampling/_installed_version.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-01-06T11:30:56,469 creating build/bdist.linux-armv7l/wheel/openpathsampling/numerics 2024-01-06T11:30:56,470 copying build/lib/openpathsampling/numerics/lookup_function.py -> build/bdist.linux-armv7l/wheel/openpathsampling/numerics 2024-01-06T11:30:56,473 copying build/lib/openpathsampling/numerics/wham.py -> build/bdist.linux-armv7l/wheel/openpathsampling/numerics 2024-01-06T11:30:56,476 copying build/lib/openpathsampling/numerics/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/numerics 2024-01-06T11:30:56,479 copying build/lib/openpathsampling/numerics/histogram.py -> build/bdist.linux-armv7l/wheel/openpathsampling/numerics 2024-01-06T11:30:56,482 copying build/lib/openpathsampling/numerics/resampling_statistics.py -> build/bdist.linux-armv7l/wheel/openpathsampling/numerics 2024-01-06T11:30:56,486 creating build/bdist.linux-armv7l/wheel/openpathsampling/engines 2024-01-06T11:30:56,488 creating build/bdist.linux-armv7l/wheel/openpathsampling/engines/features 2024-01-06T11:30:56,489 copying build/lib/openpathsampling/engines/features/base.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/features 2024-01-06T11:30:56,493 copying build/lib/openpathsampling/engines/features/box_vectors.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/features 2024-01-06T11:30:56,495 copying build/lib/openpathsampling/engines/features/statics.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/features 2024-01-06T11:30:56,497 copying build/lib/openpathsampling/engines/features/numpydoctools.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/features 2024-01-06T11:30:56,500 copying build/lib/openpathsampling/engines/features/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/features 2024-01-06T11:30:56,502 copying build/lib/openpathsampling/engines/features/kinetics.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/features 2024-01-06T11:30:56,505 copying build/lib/openpathsampling/engines/features/engine.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/features 2024-01-06T11:30:56,507 copying build/lib/openpathsampling/engines/features/coordinates.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/features 2024-01-06T11:30:56,509 copying build/lib/openpathsampling/engines/features/topology.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/features 2024-01-06T11:30:56,512 copying build/lib/openpathsampling/engines/features/velocities.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/features 2024-01-06T11:30:56,514 copying build/lib/openpathsampling/engines/features/shared.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/features 2024-01-06T11:30:56,517 creating build/bdist.linux-armv7l/wheel/openpathsampling/engines/openmm 2024-01-06T11:30:56,519 creating build/bdist.linux-armv7l/wheel/openpathsampling/engines/openmm/features 2024-01-06T11:30:56,520 copying build/lib/openpathsampling/engines/openmm/features/instantaneous_temperature.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/openmm/features 2024-01-06T11:30:56,523 copying build/lib/openpathsampling/engines/openmm/features/traj_quantities.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/openmm/features 2024-01-06T11:30:56,525 copying build/lib/openpathsampling/engines/openmm/features/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/openmm/features 2024-01-06T11:30:56,528 copying build/lib/openpathsampling/engines/openmm/features/masses.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/openmm/features 2024-01-06T11:30:56,530 copying build/lib/openpathsampling/engines/openmm/snapshot.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/openmm 2024-01-06T11:30:56,533 copying build/lib/openpathsampling/engines/openmm/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/openmm 2024-01-06T11:30:56,535 copying build/lib/openpathsampling/engines/openmm/engine.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/openmm 2024-01-06T11:30:56,538 copying build/lib/openpathsampling/engines/openmm/tools.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/openmm 2024-01-06T11:30:56,541 copying build/lib/openpathsampling/engines/openmm/topology.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/openmm 2024-01-06T11:30:56,544 creating build/bdist.linux-armv7l/wheel/openpathsampling/engines/external_snapshots 2024-01-06T11:30:56,545 creating build/bdist.linux-armv7l/wheel/openpathsampling/engines/external_snapshots/features 2024-01-06T11:30:56,546 copying build/lib/openpathsampling/engines/external_snapshots/features/box_vectors.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/external_snapshots/features 2024-01-06T11:30:56,548 copying build/lib/openpathsampling/engines/external_snapshots/features/file_info.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/external_snapshots/features 2024-01-06T11:30:56,549 copying build/lib/openpathsampling/engines/external_snapshots/features/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/external_snapshots/features 2024-01-06T11:30:56,551 copying build/lib/openpathsampling/engines/external_snapshots/features/coordinates.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/external_snapshots/features 2024-01-06T11:30:56,553 copying build/lib/openpathsampling/engines/external_snapshots/features/velocities.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/external_snapshots/features 2024-01-06T11:30:56,554 copying build/lib/openpathsampling/engines/external_snapshots/snapshot.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/external_snapshots 2024-01-06T11:30:56,556 copying build/lib/openpathsampling/engines/external_snapshots/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/external_snapshots 2024-01-06T11:30:56,558 copying build/lib/openpathsampling/engines/external_snapshots/README.md -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/external_snapshots 2024-01-06T11:30:56,560 creating build/bdist.linux-armv7l/wheel/openpathsampling/engines/toy 2024-01-06T11:30:56,562 creating build/bdist.linux-armv7l/wheel/openpathsampling/engines/toy/features 2024-01-06T11:30:56,563 copying build/lib/openpathsampling/engines/toy/features/instantaneous_temperature.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/toy/features 2024-01-06T11:30:56,565 copying build/lib/openpathsampling/engines/toy/features/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/toy/features 2024-01-06T11:30:56,566 copying build/lib/openpathsampling/engines/toy/integrators.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/toy 2024-01-06T11:30:56,569 copying build/lib/openpathsampling/engines/toy/snapshot.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/toy 2024-01-06T11:30:56,570 copying build/lib/openpathsampling/engines/toy/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/toy 2024-01-06T11:30:56,572 copying build/lib/openpathsampling/engines/toy/pes.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/toy 2024-01-06T11:30:56,574 copying build/lib/openpathsampling/engines/toy/engine.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/toy 2024-01-06T11:30:56,576 copying build/lib/openpathsampling/engines/toy/topology.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/toy 2024-01-06T11:30:56,578 copying build/lib/openpathsampling/engines/delayedinterrupt.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines 2024-01-06T11:30:56,580 copying build/lib/openpathsampling/engines/snapshot.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines 2024-01-06T11:30:56,582 copying build/lib/openpathsampling/engines/trajectory.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines 2024-01-06T11:30:56,585 copying build/lib/openpathsampling/engines/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines 2024-01-06T11:30:56,587 copying build/lib/openpathsampling/engines/topology.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines 2024-01-06T11:30:56,589 copying build/lib/openpathsampling/engines/external_engine.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines 2024-01-06T11:30:56,591 copying build/lib/openpathsampling/engines/dynamics_engine.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines 2024-01-06T11:30:56,594 creating build/bdist.linux-armv7l/wheel/openpathsampling/engines/gromacs 2024-01-06T11:30:56,595 copying build/lib/openpathsampling/engines/gromacs/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/gromacs 2024-01-06T11:30:56,597 copying build/lib/openpathsampling/engines/gromacs/engine.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/gromacs 2024-01-06T11:30:56,599 copying build/lib/openpathsampling/ops_logging.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-01-06T11:30:56,601 copying build/lib/openpathsampling/.gitignore -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-01-06T11:30:56,604 creating build/bdist.linux-armv7l/wheel/openpathsampling/pathsimulators 2024-01-06T11:30:56,605 copying build/lib/openpathsampling/pathsimulators/shoot_snapshots.py -> build/bdist.linux-armv7l/wheel/openpathsampling/pathsimulators 2024-01-06T11:30:56,608 copying build/lib/openpathsampling/pathsimulators/sshooting_simulator.py -> build/bdist.linux-armv7l/wheel/openpathsampling/pathsimulators 2024-01-06T11:30:56,610 copying build/lib/openpathsampling/pathsimulators/path_sampling.py -> build/bdist.linux-armv7l/wheel/openpathsampling/pathsimulators 2024-01-06T11:30:56,612 copying build/lib/openpathsampling/pathsimulators/bootstrap_init_conds.py -> build/bdist.linux-armv7l/wheel/openpathsampling/pathsimulators 2024-01-06T11:30:56,614 copying build/lib/openpathsampling/pathsimulators/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/pathsimulators 2024-01-06T11:30:56,616 copying build/lib/openpathsampling/pathsimulators/reactive_flux.py -> build/bdist.linux-armv7l/wheel/openpathsampling/pathsimulators 2024-01-06T11:30:56,619 copying build/lib/openpathsampling/pathsimulators/path_simulator.py -> build/bdist.linux-armv7l/wheel/openpathsampling/pathsimulators 2024-01-06T11:30:56,621 copying build/lib/openpathsampling/pathsimulators/direct_md.py -> build/bdist.linux-armv7l/wheel/openpathsampling/pathsimulators 2024-01-06T11:30:56,623 copying build/lib/openpathsampling/pathmover_inout.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-01-06T11:30:56,625 copying build/lib/openpathsampling/progress.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-01-06T11:30:56,627 copying build/lib/openpathsampling/ensemble.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-01-06T11:30:56,631 running install_egg_info 2024-01-06T11:30:56,661 Copying openpathsampling.egg-info to build/bdist.linux-armv7l/wheel/openpathsampling-1.6.0-py3.11.egg-info 2024-01-06T11:30:56,671 running install_scripts 2024-01-06T11:30:56,688 creating build/bdist.linux-armv7l/wheel/openpathsampling-1.6.0.dist-info/WHEEL 2024-01-06T11:30:56,690 creating '/tmp/pip-wheel-pdlfvih8/openpathsampling-1.6.0-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-01-06T11:30:56,693 adding 'openpathsampling/.gitignore' 2024-01-06T11:30:56,694 adding 'openpathsampling/README.md' 2024-01-06T11:30:56,696 adding 'openpathsampling/__init__.py' 2024-01-06T11:30:56,697 adding 'openpathsampling/_installed_version.py' 2024-01-06T11:30:56,700 adding 'openpathsampling/bias_function.py' 2024-01-06T11:30:56,702 adding 'openpathsampling/collectivevariable.py' 2024-01-06T11:30:56,705 adding 'openpathsampling/deprecations.py' 2024-01-06T11:30:56,717 adding 'openpathsampling/ensemble.py' 2024-01-06T11:30:56,719 adding 'openpathsampling/integration_tools.py' 2024-01-06T11:30:56,721 adding 'openpathsampling/logging.conf' 2024-01-06T11:30:56,723 adding 'openpathsampling/movechange.py' 2024-01-06T11:30:56,725 adding 'openpathsampling/ops_logging.py' 2024-01-06T11:30:56,734 adding 'openpathsampling/pathmover.py' 2024-01-06T11:30:56,737 adding 'openpathsampling/pathmover_inout.py' 2024-01-06T11:30:56,739 adding 'openpathsampling/progress.py' 2024-01-06T11:30:56,741 adding 'openpathsampling/range_logic.py' 2024-01-06T11:30:56,742 adding 'openpathsampling/rng.py' 2024-01-06T11:30:56,746 adding 'openpathsampling/sample.py' 2024-01-06T11:30:56,748 adding 'openpathsampling/shooting.py' 2024-01-06T11:30:56,751 adding 'openpathsampling/snapshot_modifier.py' 2024-01-06T11:30:56,753 adding 'openpathsampling/step_visualizer_2D.py' 2024-01-06T11:30:56,755 adding 'openpathsampling/tools.py' 2024-01-06T11:30:56,757 adding 'openpathsampling/treelogic.py' 2024-01-06T11:30:56,758 adding 'openpathsampling/version.py' 2024-01-06T11:30:56,767 adding 'openpathsampling/visualize.py' 2024-01-06T11:30:56,771 adding 'openpathsampling/volume.py' 2024-01-06T11:30:56,773 adding 'openpathsampling/analysis/.gitignore' 2024-01-06T11:30:56,774 adding 'openpathsampling/analysis/__init__.py' 2024-01-06T11:30:56,776 adding 'openpathsampling/analysis/channel_analysis.py' 2024-01-06T11:30:56,777 adding 'openpathsampling/analysis/ensemble_representation.py' 2024-01-06T11:30:56,780 adding 'openpathsampling/analysis/path_histogram.py' 2024-01-06T11:30:56,781 adding 'openpathsampling/analysis/reactive_flux_analysis.py' 2024-01-06T11:30:56,784 adding 'openpathsampling/analysis/replica_network.py' 2024-01-06T11:30:56,786 adding 'openpathsampling/analysis/shooting_point_analysis.py' 2024-01-06T11:30:56,788 adding 'openpathsampling/analysis/sshooting_analysis.py' 2024-01-06T11:30:56,790 adding 'openpathsampling/analysis/tools.py' 2024-01-06T11:30:56,792 adding 'openpathsampling/analysis/trajectory_transition_analysis.py' 2024-01-06T11:30:56,793 adding 'openpathsampling/analysis/tis/__init__.py' 2024-01-06T11:30:56,796 adding 'openpathsampling/analysis/tis/core.py' 2024-01-06T11:30:56,797 adding 'openpathsampling/analysis/tis/crossing_probability.py' 2024-01-06T11:30:56,800 adding 'openpathsampling/analysis/tis/flux.py' 2024-01-06T11:30:56,801 adding 'openpathsampling/analysis/tis/misc.py' 2024-01-06T11:30:56,803 adding 'openpathsampling/analysis/tis/standard_analysis.py' 2024-01-06T11:30:56,805 adding 'openpathsampling/beta/__init__.py' 2024-01-06T11:30:56,807 adding 'openpathsampling/beta/hooks.py' 2024-01-06T11:30:56,809 adding 'openpathsampling/collectivevariables/README.md' 2024-01-06T11:30:56,810 adding 'openpathsampling/collectivevariables/__init__.py' 2024-01-06T11:30:56,812 adding 'openpathsampling/collectivevariables/plumed_wrapper.py' 2024-01-06T11:30:56,814 adding 'openpathsampling/engines/__init__.py' 2024-01-06T11:30:56,815 adding 'openpathsampling/engines/delayedinterrupt.py' 2024-01-06T11:30:56,818 adding 'openpathsampling/engines/dynamics_engine.py' 2024-01-06T11:30:56,820 adding 'openpathsampling/engines/external_engine.py' 2024-01-06T11:30:56,822 adding 'openpathsampling/engines/snapshot.py' 2024-01-06T11:30:56,824 adding 'openpathsampling/engines/topology.py' 2024-01-06T11:30:56,826 adding 'openpathsampling/engines/trajectory.py' 2024-01-06T11:30:56,828 adding 'openpathsampling/engines/external_snapshots/README.md' 2024-01-06T11:30:56,829 adding 'openpathsampling/engines/external_snapshots/__init__.py' 2024-01-06T11:30:56,830 adding 'openpathsampling/engines/external_snapshots/snapshot.py' 2024-01-06T11:30:56,832 adding 'openpathsampling/engines/external_snapshots/features/__init__.py' 2024-01-06T11:30:56,833 adding 'openpathsampling/engines/external_snapshots/features/box_vectors.py' 2024-01-06T11:30:56,834 adding 'openpathsampling/engines/external_snapshots/features/coordinates.py' 2024-01-06T11:30:56,836 adding 'openpathsampling/engines/external_snapshots/features/file_info.py' 2024-01-06T11:30:56,837 adding 'openpathsampling/engines/external_snapshots/features/velocities.py' 2024-01-06T11:30:56,838 adding 'openpathsampling/engines/features/__init__.py' 2024-01-06T11:30:56,841 adding 'openpathsampling/engines/features/base.py' 2024-01-06T11:30:56,843 adding 'openpathsampling/engines/features/box_vectors.py' 2024-01-06T11:30:56,844 adding 'openpathsampling/engines/features/coordinates.py' 2024-01-06T11:30:56,845 adding 'openpathsampling/engines/features/engine.py' 2024-01-06T11:30:56,846 adding 'openpathsampling/engines/features/kinetics.py' 2024-01-06T11:30:56,848 adding 'openpathsampling/engines/features/numpydoctools.py' 2024-01-06T11:30:56,849 adding 'openpathsampling/engines/features/shared.py' 2024-01-06T11:30:56,850 adding 'openpathsampling/engines/features/statics.py' 2024-01-06T11:30:56,852 adding 'openpathsampling/engines/features/topology.py' 2024-01-06T11:30:56,853 adding 'openpathsampling/engines/features/velocities.py' 2024-01-06T11:30:56,854 adding 'openpathsampling/engines/gromacs/__init__.py' 2024-01-06T11:30:56,856 adding 'openpathsampling/engines/gromacs/engine.py' 2024-01-06T11:30:56,858 adding 'openpathsampling/engines/openmm/__init__.py' 2024-01-06T11:30:56,860 adding 'openpathsampling/engines/openmm/engine.py' 2024-01-06T11:30:56,862 adding 'openpathsampling/engines/openmm/snapshot.py' 2024-01-06T11:30:56,864 adding 'openpathsampling/engines/openmm/tools.py' 2024-01-06T11:30:56,865 adding 'openpathsampling/engines/openmm/topology.py' 2024-01-06T11:30:56,867 adding 'openpathsampling/engines/openmm/features/__init__.py' 2024-01-06T11:30:56,868 adding 'openpathsampling/engines/openmm/features/instantaneous_temperature.py' 2024-01-06T11:30:56,869 adding 'openpathsampling/engines/openmm/features/masses.py' 2024-01-06T11:30:56,870 adding 'openpathsampling/engines/openmm/features/traj_quantities.py' 2024-01-06T11:30:56,872 adding 'openpathsampling/engines/toy/__init__.py' 2024-01-06T11:30:56,873 adding 'openpathsampling/engines/toy/engine.py' 2024-01-06T11:30:56,875 adding 'openpathsampling/engines/toy/integrators.py' 2024-01-06T11:30:56,876 adding 'openpathsampling/engines/toy/pes.py' 2024-01-06T11:30:56,878 adding 'openpathsampling/engines/toy/snapshot.py' 2024-01-06T11:30:56,879 adding 'openpathsampling/engines/toy/topology.py' 2024-01-06T11:30:56,880 adding 'openpathsampling/engines/toy/features/__init__.py' 2024-01-06T11:30:56,882 adding 'openpathsampling/engines/toy/features/instantaneous_temperature.py' 2024-01-06T11:30:56,883 adding 'openpathsampling/ensembles/README.md' 2024-01-06T11:30:56,884 adding 'openpathsampling/ensembles/__init__.py' 2024-01-06T11:30:56,886 adding 'openpathsampling/ensembles/visit_all_states.py' 2024-01-06T11:30:56,888 adding 'openpathsampling/experimental/README.md' 2024-01-06T11:30:56,889 adding 'openpathsampling/experimental/__init__.py' 2024-01-06T11:30:56,891 adding 'openpathsampling/experimental/simstore/__init__.py' 2024-01-06T11:30:56,892 adding 'openpathsampling/experimental/simstore/attribute_handlers.py' 2024-01-06T11:30:56,894 adding 'openpathsampling/experimental/simstore/backend.py' 2024-01-06T11:30:56,895 adding 'openpathsampling/experimental/simstore/callable_codec.py' 2024-01-06T11:30:56,898 adding 'openpathsampling/experimental/simstore/class_info.py' 2024-01-06T11:30:56,899 adding 'openpathsampling/experimental/simstore/class_lookup.py' 2024-01-06T11:30:56,901 adding 'openpathsampling/experimental/simstore/custom_json.py' 2024-01-06T11:30:56,902 adding 'openpathsampling/experimental/simstore/dict_serialization_helpers.py' 2024-01-06T11:30:56,904 adding 'openpathsampling/experimental/simstore/memory_backend.py' 2024-01-06T11:30:56,905 adding 'openpathsampling/experimental/simstore/my_types.py' 2024-01-06T11:30:56,907 adding 'openpathsampling/experimental/simstore/proxy.py' 2024-01-06T11:30:56,908 adding 'openpathsampling/experimental/simstore/serialization.py' 2024-01-06T11:30:56,911 adding 'openpathsampling/experimental/simstore/serialization_helpers.py' 2024-01-06T11:30:56,914 adding 'openpathsampling/experimental/simstore/sql_backend.py' 2024-01-06T11:30:56,917 adding 'openpathsampling/experimental/simstore/storable_functions.py' 2024-01-06T11:30:56,921 adding 'openpathsampling/experimental/simstore/storage.py' 2024-01-06T11:30:56,923 adding 'openpathsampling/experimental/simstore/tags_table.py' 2024-01-06T11:30:56,924 adding 'openpathsampling/experimental/simstore/test_attribute_handlers.py' 2024-01-06T11:30:56,925 adding 'openpathsampling/experimental/simstore/test_backend.py' 2024-01-06T11:30:56,926 adding 'openpathsampling/experimental/simstore/test_callable_codec.py' 2024-01-06T11:30:56,928 adding 'openpathsampling/experimental/simstore/test_class_info.py' 2024-01-06T11:30:56,929 adding 'openpathsampling/experimental/simstore/test_custom_json.py' 2024-01-06T11:30:56,931 adding 'openpathsampling/experimental/simstore/test_dict_serialization_helpers.py' 2024-01-06T11:30:56,932 adding 'openpathsampling/experimental/simstore/test_serialization.py' 2024-01-06T11:30:56,934 adding 'openpathsampling/experimental/simstore/test_serialization_helpers.py' 2024-01-06T11:30:56,936 adding 'openpathsampling/experimental/simstore/test_sql_backend.py' 2024-01-06T11:30:56,938 adding 'openpathsampling/experimental/simstore/test_storable_function.py' 2024-01-06T11:30:56,940 adding 'openpathsampling/experimental/simstore/test_storable_function_integration.py' 2024-01-06T11:30:56,941 adding 'openpathsampling/experimental/simstore/test_storage.py' 2024-01-06T11:30:56,943 adding 'openpathsampling/experimental/simstore/test_tags_table.py' 2024-01-06T11:30:56,944 adding 'openpathsampling/experimental/simstore/test_tools.py' 2024-01-06T11:30:56,945 adding 'openpathsampling/experimental/simstore/test_type_ident.py' 2024-01-06T11:30:56,947 adding 'openpathsampling/experimental/simstore/test_utils.py' 2024-01-06T11:30:56,948 adding 'openpathsampling/experimental/simstore/tools.py' 2024-01-06T11:30:56,950 adding 'openpathsampling/experimental/simstore/type_ident.py' 2024-01-06T11:30:56,951 adding 'openpathsampling/experimental/simstore/uuids.py' 2024-01-06T11:30:56,952 adding 'openpathsampling/experimental/simstore/wrapper.py' 2024-01-06T11:30:56,954 adding 'openpathsampling/experimental/simstore/regressions/README.md' 2024-01-06T11:30:56,955 adding 'openpathsampling/experimental/simstore/regressions/test_numpy_sfrs.py' 2024-01-06T11:30:56,957 adding 'openpathsampling/experimental/storage/__init__.py' 2024-01-06T11:30:56,958 adding 'openpathsampling/experimental/storage/collective_variables.py' 2024-01-06T11:30:56,960 adding 'openpathsampling/experimental/storage/mdtraj_json.py' 2024-01-06T11:30:56,961 adding 'openpathsampling/experimental/storage/monkey_patches.py' 2024-01-06T11:30:56,963 adding 'openpathsampling/experimental/storage/ops_storage.py' 2024-01-06T11:30:56,964 adding 'openpathsampling/experimental/storage/simtk_unit.py' 2024-01-06T11:30:56,966 adding 'openpathsampling/experimental/storage/snapshots.py' 2024-01-06T11:30:56,967 adding 'openpathsampling/experimental/storage/snapshots_table.py' 2024-01-06T11:30:56,969 adding 'openpathsampling/experimental/storage/test_collective_variables.py' 2024-01-06T11:30:56,970 adding 'openpathsampling/experimental/storage/test_mdtraj_json.py' 2024-01-06T11:30:56,971 adding 'openpathsampling/experimental/storage/test_monkey_patches.py' 2024-01-06T11:30:56,972 adding 'openpathsampling/experimental/storage/test_pathsampling.py' 2024-01-06T11:30:56,974 adding 'openpathsampling/experimental/storage/test_regressions.py' 2024-01-06T11:30:56,975 adding 'openpathsampling/experimental/storage/test_simtk_unit.py' 2024-01-06T11:30:56,976 adding 'openpathsampling/experimental/storage/test_snapshot_integrations.py' 2024-01-06T11:30:56,978 adding 'openpathsampling/experimental/storage/test_snapshots.py' 2024-01-06T11:30:56,979 adding 'openpathsampling/experimental/storage/test_snapshots_table.py' 2024-01-06T11:30:56,981 adding 'openpathsampling/high_level/__init__.py' 2024-01-06T11:30:56,983 adding 'openpathsampling/high_level/interface_set.py' 2024-01-06T11:30:56,988 adding 'openpathsampling/high_level/move_scheme.py' 2024-01-06T11:30:56,993 adding 'openpathsampling/high_level/move_strategy.py' 2024-01-06T11:30:56,995 adding 'openpathsampling/high_level/ms_outer_interface.py' 2024-01-06T11:30:56,999 adding 'openpathsampling/high_level/network.py' 2024-01-06T11:30:57,001 adding 'openpathsampling/high_level/part_in_b_tps.py' 2024-01-06T11:30:57,003 adding 'openpathsampling/high_level/transition.py' 2024-01-06T11:30:57,005 adding 'openpathsampling/netcdfplus/__init__.py' 2024-01-06T11:30:57,007 adding 'openpathsampling/netcdfplus/attribute.py' 2024-01-06T11:30:57,009 adding 'openpathsampling/netcdfplus/base.py' 2024-01-06T11:30:57,011 adding 'openpathsampling/netcdfplus/cache.py' 2024-01-06T11:30:57,013 adding 'openpathsampling/netcdfplus/chaindict.py' 2024-01-06T11:30:57,016 adding 'openpathsampling/netcdfplus/dictify.py' 2024-01-06T11:30:57,021 adding 'openpathsampling/netcdfplus/netcdfplus.py' 2024-01-06T11:30:57,023 adding 'openpathsampling/netcdfplus/proxy.py' 2024-01-06T11:30:57,024 adding 'openpathsampling/netcdfplus/util.py' 2024-01-06T11:30:57,025 adding 'openpathsampling/netcdfplus/version.py' 2024-01-06T11:30:57,027 adding 'openpathsampling/netcdfplus/stores/__init__.py' 2024-01-06T11:30:57,028 adding 'openpathsampling/netcdfplus/stores/attribute.py' 2024-01-06T11:30:57,030 adding 'openpathsampling/netcdfplus/stores/dict.py' 2024-01-06T11:30:57,031 adding 'openpathsampling/netcdfplus/stores/indexed.py' 2024-01-06T11:30:57,034 adding 'openpathsampling/netcdfplus/stores/named.py' 2024-01-06T11:30:57,038 adding 'openpathsampling/netcdfplus/stores/object.py' 2024-01-06T11:30:57,040 adding 'openpathsampling/netcdfplus/stores/value.py' 2024-01-06T11:30:57,041 adding 'openpathsampling/netcdfplus/stores/variable.py' 2024-01-06T11:30:57,043 adding 'openpathsampling/numerics/__init__.py' 2024-01-06T11:30:57,046 adding 'openpathsampling/numerics/histogram.py' 2024-01-06T11:30:57,048 adding 'openpathsampling/numerics/lookup_function.py' 2024-01-06T11:30:57,050 adding 'openpathsampling/numerics/resampling_statistics.py' 2024-01-06T11:30:57,052 adding 'openpathsampling/numerics/wham.py' 2024-01-06T11:30:57,054 adding 'openpathsampling/pathmovers/README.md' 2024-01-06T11:30:57,055 adding 'openpathsampling/pathmovers/__init__.py' 2024-01-06T11:30:57,056 adding 'openpathsampling/pathmovers/move_schemes.py' 2024-01-06T11:30:57,057 adding 'openpathsampling/pathmovers/move_strategies.py' 2024-01-06T11:30:57,060 adding 'openpathsampling/pathmovers/spring_shooting.py' 2024-01-06T11:30:57,062 adding 'openpathsampling/pathsimulators/__init__.py' 2024-01-06T11:30:57,064 adding 'openpathsampling/pathsimulators/bootstrap_init_conds.py' 2024-01-06T11:30:57,065 adding 'openpathsampling/pathsimulators/direct_md.py' 2024-01-06T11:30:57,068 adding 'openpathsampling/pathsimulators/path_sampling.py' 2024-01-06T11:30:57,069 adding 'openpathsampling/pathsimulators/path_simulator.py' 2024-01-06T11:30:57,071 adding 'openpathsampling/pathsimulators/reactive_flux.py' 2024-01-06T11:30:57,072 adding 'openpathsampling/pathsimulators/shoot_snapshots.py' 2024-01-06T11:30:57,074 adding 'openpathsampling/pathsimulators/sshooting_simulator.py' 2024-01-06T11:30:57,075 adding 'openpathsampling/resources/debug_logging.conf' 2024-01-06T11:30:57,077 adding 'openpathsampling/resources/engine_debug.conf' 2024-01-06T11:30:57,078 adding 'openpathsampling/resources/logging.conf' 2024-01-06T11:30:57,079 adding 'openpathsampling/resources/vis.css' 2024-01-06T11:30:57,081 adding 'openpathsampling/storage/__init__.py' 2024-01-06T11:30:57,082 adding 'openpathsampling/storage/distributed.py' 2024-01-06T11:30:57,084 adding 'openpathsampling/storage/storage.py' 2024-01-06T11:30:57,086 adding 'openpathsampling/storage/util.py' 2024-01-06T11:30:57,087 adding 'openpathsampling/storage/stores/__init__.py' 2024-01-06T11:30:57,089 adding 'openpathsampling/storage/stores/collectivevariable.py' 2024-01-06T11:30:57,090 adding 'openpathsampling/storage/stores/mcstep.py' 2024-01-06T11:30:57,091 adding 'openpathsampling/storage/stores/movechange.py' 2024-01-06T11:30:57,092 adding 'openpathsampling/storage/stores/pathsimulator.py' 2024-01-06T11:30:57,094 adding 'openpathsampling/storage/stores/sample.py' 2024-01-06T11:30:57,095 adding 'openpathsampling/storage/stores/snapshot_base.py' 2024-01-06T11:30:57,096 adding 'openpathsampling/storage/stores/snapshot_feature.py' 2024-01-06T11:30:57,097 adding 'openpathsampling/storage/stores/snapshot_value.py' 2024-01-06T11:30:57,100 adding 'openpathsampling/storage/stores/snapshot_wrapper.py' 2024-01-06T11:30:57,102 adding 'openpathsampling/storage/stores/trajectory.py' 2024-01-06T11:30:57,103 adding 'openpathsampling/strategies/__init__.py' 2024-01-06T11:30:57,106 adding 'openpathsampling/tests/.gitignore' 2024-01-06T11:30:57,107 adding 'openpathsampling/tests/__init__.py' 2024-01-06T11:30:57,108 adding 'openpathsampling/tests/test_api.py' 2024-01-06T11:30:57,109 adding 'openpathsampling/tests/test_attribute.py' 2024-01-06T11:30:57,111 adding 'openpathsampling/tests/test_bias_function.py' 2024-01-06T11:30:57,113 adding 'openpathsampling/tests/test_channel_analysis.py' 2024-01-06T11:30:57,115 adding 'openpathsampling/tests/test_collectivevariable.py' 2024-01-06T11:30:57,117 adding 'openpathsampling/tests/test_deprecations.py' 2024-01-06T11:30:57,118 adding 'openpathsampling/tests/test_dynamicsengine.py' 2024-01-06T11:30:57,126 adding 'openpathsampling/tests/test_ensemble.py' 2024-01-06T11:30:57,128 adding 'openpathsampling/tests/test_external_engine.py' 2024-01-06T11:30:57,129 adding 'openpathsampling/tests/test_external_snapshots.py' 2024-01-06T11:30:57,131 adding 'openpathsampling/tests/test_features.py' 2024-01-06T11:30:57,133 adding 'openpathsampling/tests/test_gromacs_engine.py' 2024-01-06T11:30:57,135 adding 'openpathsampling/tests/test_helpers.py' 2024-01-06T11:30:57,136 adding 'openpathsampling/tests/test_histogram.py' 2024-01-06T11:30:57,138 adding 'openpathsampling/tests/test_integration_tools.py' 2024-01-06T11:30:57,139 adding 'openpathsampling/tests/test_interface_set.py' 2024-01-06T11:30:57,141 adding 'openpathsampling/tests/test_lookup_function.py' 2024-01-06T11:30:57,142 adding 'openpathsampling/tests/test_mdtraj_support.py' 2024-01-06T11:30:57,146 adding 'openpathsampling/tests/test_movescheme.py' 2024-01-06T11:30:57,152 adding 'openpathsampling/tests/test_movestrategy.py' 2024-01-06T11:30:57,153 adding 'openpathsampling/tests/test_ms_outer_interface.py' 2024-01-06T11:30:57,154 adding 'openpathsampling/tests/test_netcdfplus_base.py' 2024-01-06T11:30:57,157 adding 'openpathsampling/tests/test_network.py' 2024-01-06T11:30:57,159 adding 'openpathsampling/tests/test_openmm_engine.py' 2024-01-06T11:30:57,160 adding 'openpathsampling/tests/test_openmm_snapshot.py' 2024-01-06T11:30:57,162 adding 'openpathsampling/tests/test_openmm_tools.py' 2024-01-06T11:30:57,163 adding 'openpathsampling/tests/test_part_in_b_tps.py' 2024-01-06T11:30:57,165 adding 'openpathsampling/tests/test_path_histogram.py' 2024-01-06T11:30:57,170 adding 'openpathsampling/tests/test_pathmover.py' 2024-01-06T11:30:57,174 adding 'openpathsampling/tests/test_pathsimulator.py' 2024-01-06T11:30:57,176 adding 'openpathsampling/tests/test_plumed_wrapper.py' 2024-01-06T11:30:57,177 adding 'openpathsampling/tests/test_progress.py' 2024-01-06T11:30:57,178 adding 'openpathsampling/tests/test_pyemma_cv.py' 2024-01-06T11:30:57,180 adding 'openpathsampling/tests/test_range_logic.py' 2024-01-06T11:30:57,181 adding 'openpathsampling/tests/test_reactive_flux_analysis.py' 2024-01-06T11:30:57,183 adding 'openpathsampling/tests/test_resampling_statistics.py' 2024-01-06T11:30:57,184 adding 'openpathsampling/tests/test_rng.py' 2024-01-06T11:30:57,186 adding 'openpathsampling/tests/test_sample.py' 2024-01-06T11:30:57,187 adding 'openpathsampling/tests/test_shared.py' 2024-01-06T11:30:57,189 adding 'openpathsampling/tests/test_shooting.py' 2024-01-06T11:30:57,191 adding 'openpathsampling/tests/test_shooting_point_analysis.py' 2024-01-06T11:30:57,192 adding 'openpathsampling/tests/test_snapshot.py' 2024-01-06T11:30:57,195 adding 'openpathsampling/tests/test_snapshot_modifier.py' 2024-01-06T11:30:57,197 adding 'openpathsampling/tests/test_spring_shooting.py' 2024-01-06T11:30:57,199 adding 'openpathsampling/tests/test_sshooting_analysis.py' 2024-01-06T11:30:57,200 adding 'openpathsampling/tests/test_sshooting_simulator.py' 2024-01-06T11:30:57,202 adding 'openpathsampling/tests/test_storage.py' 2024-01-06T11:30:57,206 adding 'openpathsampling/tests/test_tis_analysis.py' 2024-01-06T11:30:57,208 adding 'openpathsampling/tests/test_tools.py' 2024-01-06T11:30:57,210 adding 'openpathsampling/tests/test_toy_dynamics.py' 2024-01-06T11:30:57,211 adding 'openpathsampling/tests/test_toy_features.py' 2024-01-06T11:30:57,212 adding 'openpathsampling/tests/test_trajectory.py' 2024-01-06T11:30:57,214 adding 'openpathsampling/tests/test_trajectory_transition_analysis.py' 2024-01-06T11:30:57,215 adding 'openpathsampling/tests/test_transitions.py' 2024-01-06T11:30:57,217 adding 'openpathsampling/tests/test_visit_all_states.py' 2024-01-06T11:30:57,219 adding 'openpathsampling/tests/test_volume.py' 2024-01-06T11:30:57,221 adding 'openpathsampling/tests/test_wham.py' 2024-01-06T11:30:57,222 adding 'openpathsampling/tests/analysis/__init__.py' 2024-01-06T11:30:57,223 adding 'openpathsampling/tests/analysis/conftest.py' 2024-01-06T11:30:57,225 adding 'openpathsampling/tests/analysis/utils/__init__.py' 2024-01-06T11:30:57,226 adding 'openpathsampling/tests/analysis/utils/fixture_classes.py' 2024-01-06T11:30:57,229 adding 'openpathsampling/tests/analysis/utils/mock_movers.py' 2024-01-06T11:30:57,230 adding 'openpathsampling/tests/analysis/utils/test_fixture_classes.py' 2024-01-06T11:30:57,232 adding 'openpathsampling/tests/analysis/utils/test_mock_movers.py' 2024-01-06T11:30:57,234 adding 'openpathsampling/tests/external_engine/Makefile' 2024-01-06T11:30:57,235 adding 'openpathsampling/tests/external_engine/engine.c' 2024-01-06T11:30:57,236 adding 'openpathsampling/tests/external_engine/microtest.py' 2024-01-06T11:30:57,238 adding 'openpathsampling/tests/pathsimulators/__init__.py' 2024-01-06T11:30:57,240 adding 'openpathsampling/tests/pathsimulators/test_hooks.py' 2024-01-06T11:30:57,429 adding 'openpathsampling/tests/test_data/ala_small_traj.pdb' 2024-01-06T11:30:57,439 adding 'openpathsampling/tests/test_data/tip4p_water.pdb' 2024-01-06T11:30:57,441 adding 'openpathsampling/tests/test_data/apis/ops1x0_api.txt' 2024-01-06T11:30:57,458 adding 'openpathsampling/tests/test_data/gromacs_engine/conf.gro' 2024-01-06T11:30:57,460 adding 'openpathsampling/tests/test_data/gromacs_engine/md.mdp' 2024-01-06T11:30:57,461 adding 'openpathsampling/tests/test_data/gromacs_engine/topol.top' 2024-01-06T11:30:57,484 adding 'openpathsampling/tests/test_data/gromacs_engine/traj.trr' 2024-01-06T11:30:57,507 adding 'openpathsampling/tests/test_data/gromacs_engine/project_trr/0000000.trr' 2024-01-06T11:30:57,815 adding 'openpathsampling/tests/test_data/gromacs_engine/project_trr/0000099.trr' 2024-01-06T11:30:57,846 adding 'openpathsampling/tests/test_data/plumed_wrapper/AD_initial_frame.pdb' 2024-01-06T11:30:57,849 adding 'openpathsampling/tests/test_data/plumed_wrapper/AD_plumed_rmsd.pdb' 2024-01-06T11:30:57,857 adding 'openpathsampling/tests/test_data/reduce_box_vects/dna.gro' 2024-01-06T11:30:57,862 adding 'openpathsampling/tests/test_data/reduce_box_vects/dna.trr' 2024-01-06T11:30:57,864 adding 'openpathsampling-1.6.0.dist-info/LICENSE' 2024-01-06T11:30:57,865 adding 'openpathsampling-1.6.0.dist-info/METADATA' 2024-01-06T11:30:57,866 adding 'openpathsampling-1.6.0.dist-info/WHEEL' 2024-01-06T11:30:57,867 adding 'openpathsampling-1.6.0.dist-info/top_level.txt' 2024-01-06T11:30:57,872 adding 'openpathsampling-1.6.0.dist-info/RECORD' 2024-01-06T11:30:57,909 removing build/bdist.linux-armv7l/wheel 2024-01-06T11:30:58,095 Building wheel for openpathsampling (setup.py): finished with status 'done' 2024-01-06T11:30:58,129 Created wheel for openpathsampling: filename=openpathsampling-1.6.0-py2.py3-none-any.whl size=3188254 sha256=f38836d7904ebe1e4853fc9a3d6c412400320511eea27df7fed584d1b15040eb 2024-01-06T11:30:58,130 Stored in directory: /tmp/pip-ephem-wheel-cache-p6i88n7i/wheels/6d/b1/f5/eca5628c9445261c622a1cbc3a4015111a51c077f1495cc790 2024-01-06T11:30:58,150 Successfully built openpathsampling 2024-01-06T11:30:58,231 Removed build tracker: '/tmp/pip-build-tracker-s8j4idk1'