2024-01-06T12:10:54,864 Created temporary directory: /tmp/pip-build-tracker-xq6q7qgv 2024-01-06T12:10:54,865 Initialized build tracking at /tmp/pip-build-tracker-xq6q7qgv 2024-01-06T12:10:54,865 Created build tracker: /tmp/pip-build-tracker-xq6q7qgv 2024-01-06T12:10:54,865 Entered build tracker: /tmp/pip-build-tracker-xq6q7qgv 2024-01-06T12:10:54,866 Created temporary directory: /tmp/pip-wheel-_uzh87a5 2024-01-06T12:10:54,870 Created temporary directory: /tmp/pip-ephem-wheel-cache-cg3xp5zf 2024-01-06T12:10:54,894 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-06T12:10:54,897 2 location(s) to search for versions of pygenetic-code: 2024-01-06T12:10:54,897 * https://pypi.org/simple/pygenetic-code/ 2024-01-06T12:10:54,897 * https://www.piwheels.org/simple/pygenetic-code/ 2024-01-06T12:10:54,898 Fetching project page and analyzing links: https://pypi.org/simple/pygenetic-code/ 2024-01-06T12:10:54,899 Getting page https://pypi.org/simple/pygenetic-code/ 2024-01-06T12:10:54,900 Found index url https://pypi.org/simple/ 2024-01-06T12:10:55,028 Fetched page https://pypi.org/simple/pygenetic-code/ as application/vnd.pypi.simple.v1+json 2024-01-06T12:10:55,032 Found link https://files.pythonhosted.org/packages/84/a1/cc8e872bc8e528b41332f1fab947d9602df53d40791107f6e90617080184/pygenetic_code-0.1.tar.gz (from https://pypi.org/simple/pygenetic-code/), version: 0.1 2024-01-06T12:10:55,032 Skipping link: No binaries permitted for pygenetic-code: https://files.pythonhosted.org/packages/60/74/3de8b3f7823254cc6a7ca4fa3328b71a80eb0a3ab116418577a3f7034b85/pygenetic_code-0.12-py3-none-any.whl (from https://pypi.org/simple/pygenetic-code/) 2024-01-06T12:10:55,033 Found link https://files.pythonhosted.org/packages/d1/ba/422310256df438c65366a0fb9ac06223f2de825c492593ef1a0515bb155f/pygenetic_code-0.12.tar.gz (from https://pypi.org/simple/pygenetic-code/), version: 0.12 2024-01-06T12:10:55,033 Skipping link: No binaries permitted for pygenetic-code: https://files.pythonhosted.org/packages/3f/de/3956838a090b1192897fa5a96db2644fb86f0ce706ef6711e5c36d334ffd/pygenetic_code-0.13-py3-none-any.whl (from https://pypi.org/simple/pygenetic-code/) 2024-01-06T12:10:55,034 Found link https://files.pythonhosted.org/packages/4b/65/6a45b507d5c90fbf58361fe51c89682a41a599517ebb82a1ef973af2bfe5/pygenetic_code-0.13.tar.gz (from https://pypi.org/simple/pygenetic-code/), version: 0.13 2024-01-06T12:10:55,034 Skipping link: No binaries permitted for pygenetic-code: https://files.pythonhosted.org/packages/45/32/7da0871bf6bacb18bad69098225a36fe722abf9ce25a5425e2613464f684/pygenetic_code-0.14-cp312-cp312-manylinux_2_35_x86_64.whl (from https://pypi.org/simple/pygenetic-code/) 2024-01-06T12:10:55,034 Found link https://files.pythonhosted.org/packages/b8/59/12e920bb85a3e63484bee6a9f19540c123d13141d90278d9df3fee2657b0/pygenetic_code-0.14.tar.gz (from https://pypi.org/simple/pygenetic-code/), version: 0.14 2024-01-06T12:10:55,035 Skipping link: No binaries permitted for pygenetic-code: https://files.pythonhosted.org/packages/96/56/8807d2e99754f6fb3b42e7f222645de44b3236175932883b81034e5187bc/pygenetic_code-0.16.0-cp312-cp312-manylinux_2_35_x86_64.whl (from https://pypi.org/simple/pygenetic-code/) 2024-01-06T12:10:55,035 Found link https://files.pythonhosted.org/packages/02/35/313be3eee9901c3f33c6a181ea66780b7d8a3c9e45c94335765f20e7d708/pygenetic_code-0.16.0.tar.gz (from https://pypi.org/simple/pygenetic-code/), version: 0.16.0 2024-01-06T12:10:55,035 Skipping link: No binaries permitted for pygenetic-code: https://files.pythonhosted.org/packages/3f/2f/785e03d0bdd6b68b73979678af82750864ef1985ebaedff32718b0b63afa/pygenetic_code-0.20.0-cp312-cp312-manylinux_2_35_x86_64.whl (from https://pypi.org/simple/pygenetic-code/) 2024-01-06T12:10:55,036 Found link https://files.pythonhosted.org/packages/b6/6f/034dc48dd7768cb5aecabb4c2b68e5ff48d7fea6ee3fc51fed7a068e7c11/pygenetic_code-0.20.0.tar.gz (from https://pypi.org/simple/pygenetic-code/), version: 0.20.0 2024-01-06T12:10:55,036 Fetching project page and analyzing links: https://www.piwheels.org/simple/pygenetic-code/ 2024-01-06T12:10:55,037 Getting page https://www.piwheels.org/simple/pygenetic-code/ 2024-01-06T12:10:55,038 Found index url https://www.piwheels.org/simple/ 2024-01-06T12:10:55,118 Fetched page https://www.piwheels.org/simple/pygenetic-code/ as text/html 2024-01-06T12:10:55,122 Skipping link: No binaries permitted for pygenetic-code: https://www.piwheels.org/simple/pygenetic-code/pygenetic_code-0.20.0-cp311-cp311-manylinux_2_36_armv7l.whl#sha256=9de71a4b6dd7840b28a0539ef3d97c734ef21843dca2fc9f0679b6ca0f241cd3 (from https://www.piwheels.org/simple/pygenetic-code/) 2024-01-06T12:10:55,123 Skipping link: No binaries permitted for pygenetic-code: https://www.piwheels.org/simple/pygenetic-code/pygenetic_code-0.16.0-cp311-cp311-manylinux_2_36_armv7l.whl#sha256=114e09c52cf6b8c9d2c626fb11da3059baccb7ab6c020acf465f24da8562a9a2 (from https://www.piwheels.org/simple/pygenetic-code/) 2024-01-06T12:10:55,123 Skipping link: No binaries permitted for pygenetic-code: https://www.piwheels.org/simple/pygenetic-code/pygenetic_code-0.16.0-cp37-cp37m-manylinux_2_28_armv7l.whl#sha256=891f4f8c9d52ea9b174da13c913ba62ba619daab5950c9ed3856b7b13bff65e0 (from https://www.piwheels.org/simple/pygenetic-code/) 2024-01-06T12:10:55,123 Skipping link: No binaries permitted for pygenetic-code: https://www.piwheels.org/simple/pygenetic-code/pygenetic_code-0.14-cp311-cp311-manylinux_2_36_armv7l.whl#sha256=1f9897d4aefaaa4785353a29a7be70df14485c4862db8b4cad9b72b2fe4375c6 (from https://www.piwheels.org/simple/pygenetic-code/) 2024-01-06T12:10:55,123 Skipping link: No binaries permitted for pygenetic-code: https://www.piwheels.org/simple/pygenetic-code/pygenetic_code-0.14-cp37-cp37m-manylinux_2_28_armv7l.whl#sha256=f3aef30fe8cfabcd3bd39b27d25b624ec15c47a641f7ae379973528849e5aeea (from https://www.piwheels.org/simple/pygenetic-code/) 2024-01-06T12:10:55,124 Skipping link: No binaries permitted for pygenetic-code: https://www.piwheels.org/simple/pygenetic-code/pygenetic_code-0.13-py3-none-any.whl#sha256=c2dfb0365c143e7bc54e9d740400a9d734d69f6ba1529dca9d46ea49f2d6dc13 (from https://www.piwheels.org/simple/pygenetic-code/) 2024-01-06T12:10:55,124 Skipping link: No binaries permitted for pygenetic-code: https://www.piwheels.org/simple/pygenetic-code/pygenetic_code-0.12-py3-none-any.whl#sha256=30e9f0137d9393a7e979afe9d8619a4e16ba32093e1d658e5bf07dfcd95efa5f (from https://www.piwheels.org/simple/pygenetic-code/) 2024-01-06T12:10:55,124 Skipping link: not a file: https://www.piwheels.org/simple/pygenetic-code/ 2024-01-06T12:10:55,124 Skipping link: not a file: https://pypi.org/simple/pygenetic-code/ 2024-01-06T12:10:55,143 Given no hashes to check 1 links for project 'pygenetic-code': discarding no candidates 2024-01-06T12:10:55,161 Collecting pygenetic-code==0.14 2024-01-06T12:10:55,163 Created temporary directory: /tmp/pip-unpack-ycqujaud 2024-01-06T12:10:55,207 Downloading pygenetic_code-0.14.tar.gz (65 kB) 2024-01-06T12:10:55,314 Added pygenetic-code==0.14 from https://files.pythonhosted.org/packages/b8/59/12e920bb85a3e63484bee6a9f19540c123d13141d90278d9df3fee2657b0/pygenetic_code-0.14.tar.gz to build tracker '/tmp/pip-build-tracker-xq6q7qgv' 2024-01-06T12:10:55,318 Created temporary directory: /tmp/pip-build-env-p9m7xtnh 2024-01-06T12:10:55,328 Installing build dependencies: started 2024-01-06T12:10:55,329 Running command pip subprocess to install build dependencies 2024-01-06T12:10:56,709 Using pip 23.3.1 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9) 2024-01-06T12:10:57,246 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-06T12:10:57,505 Collecting scikit-build-core 2024-01-06T12:10:57,522 Using cached https://www.piwheels.org/simple/scikit-build-core/scikit_build_core-0.7.1-py3-none-any.whl (136 kB) 2024-01-06T12:10:57,796 Collecting exceptiongroup (from scikit-build-core) 2024-01-06T12:10:57,812 Using cached https://www.piwheels.org/simple/exceptiongroup/exceptiongroup-1.2.0-py3-none-any.whl (16 kB) 2024-01-06T12:10:57,974 Collecting packaging>=20.9 (from scikit-build-core) 2024-01-06T12:10:57,991 Using cached https://www.piwheels.org/simple/packaging/packaging-23.2-py3-none-any.whl (53 kB) 2024-01-06T12:10:58,104 Collecting tomli>=1.1 (from scikit-build-core) 2024-01-06T12:10:58,120 Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB) 2024-01-06T12:10:59,939 Installing collected packages: tomli, packaging, exceptiongroup, scikit-build-core 2024-01-06T12:11:00,640 Successfully installed exceptiongroup-1.2.0 packaging-23.2 scikit-build-core-0.7.1 tomli-2.0.1 2024-01-06T12:11:00,826 [notice] A new release of pip is available: 23.3.1 -> 23.3.2 2024-01-06T12:11:00,826 [notice] To update, run: python3 -m pip install --upgrade pip 2024-01-06T12:11:01,059 Installing build dependencies: finished with status 'done' 2024-01-06T12:11:01,065 Getting requirements to build wheel: started 2024-01-06T12:11:01,066 Running command Getting requirements to build wheel 2024-01-06T12:11:01,504 Getting requirements to build wheel: finished with status 'done' 2024-01-06T12:11:01,522 Installing backend dependencies: started 2024-01-06T12:11:01,523 Running command pip subprocess to install backend dependencies 2024-01-06T12:11:02,740 Using pip 23.3.1 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9) 2024-01-06T12:11:03,308 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-06T12:11:03,538 Collecting pathspec 2024-01-06T12:11:03,557 Using cached https://www.piwheels.org/simple/pathspec/pathspec-0.12.1-py3-none-any.whl (31 kB) 2024-01-06T12:11:03,649 Collecting pyproject_metadata 2024-01-06T12:11:03,886 Using cached https://www.piwheels.org/simple/pyproject-metadata/pyproject_metadata-0.7.1-py3-none-any.whl (7.4 kB) 2024-01-06T12:11:04,112 Collecting packaging>=19.0 (from pyproject_metadata) 2024-01-06T12:11:04,131 Using cached https://www.piwheels.org/simple/packaging/packaging-23.2-py3-none-any.whl (53 kB) 2024-01-06T12:11:05,834 Installing collected packages: pathspec, packaging, pyproject_metadata 2024-01-06T12:11:06,339 Successfully installed packaging-23.2 pathspec-0.12.1 pyproject_metadata-0.7.1 2024-01-06T12:11:06,551 [notice] A new release of pip is available: 23.3.1 -> 23.3.2 2024-01-06T12:11:06,551 [notice] To update, run: python3 -m pip install --upgrade pip 2024-01-06T12:11:06,782 Installing backend dependencies: finished with status 'done' 2024-01-06T12:11:06,785 Created temporary directory: /tmp/pip-modern-metadata-hrqq3zht 2024-01-06T12:11:06,787 Preparing metadata (pyproject.toml): started 2024-01-06T12:11:06,788 Running command Preparing metadata (pyproject.toml) 2024-01-06T12:11:07,304 *** scikit-build-core 0.7.1 using CMake 3.18.4 (metadata_wheel) 2024-01-06T12:11:07,395 Preparing metadata (pyproject.toml): finished with status 'done' 2024-01-06T12:11:07,401 Source in /tmp/pip-wheel-_uzh87a5/pygenetic-code_09cd820baa964382b80e136d00b2229c has version 0.14, which satisfies requirement pygenetic-code==0.14 from https://files.pythonhosted.org/packages/b8/59/12e920bb85a3e63484bee6a9f19540c123d13141d90278d9df3fee2657b0/pygenetic_code-0.14.tar.gz 2024-01-06T12:11:07,402 Removed pygenetic-code==0.14 from https://files.pythonhosted.org/packages/b8/59/12e920bb85a3e63484bee6a9f19540c123d13141d90278d9df3fee2657b0/pygenetic_code-0.14.tar.gz from build tracker '/tmp/pip-build-tracker-xq6q7qgv' 2024-01-06T12:11:07,406 Created temporary directory: /tmp/pip-unpack-65iben04 2024-01-06T12:11:07,407 Created temporary directory: /tmp/pip-unpack-m1qfn3h3 2024-01-06T12:11:07,409 Building wheels for collected packages: pygenetic-code 2024-01-06T12:11:07,413 Created temporary directory: /tmp/pip-wheel-jmopb7gz 2024-01-06T12:11:07,414 Destination directory: /tmp/pip-wheel-jmopb7gz 2024-01-06T12:11:07,416 Building wheel for pygenetic-code (pyproject.toml): started 2024-01-06T12:11:07,417 Running command Building wheel for pygenetic-code (pyproject.toml) 2024-01-06T12:11:07,913 *** scikit-build-core 0.7.1 using CMake 3.18.4 (wheel) 2024-01-06T12:11:07,934 *** Configuring CMake... 2024-01-06T12:11:08,046 loading initial cache file /tmp/tmpxgc_ztqm/build/CMakeInit.txt 2024-01-06T12:11:08,300 -- The C compiler identification is GNU 10.2.1 2024-01-06T12:11:08,344 -- Detecting C compiler ABI info 2024-01-06T12:11:08,592 -- Detecting C compiler ABI info - done 2024-01-06T12:11:08,636 -- Check for working C compiler: /usr/bin/cc - skipped 2024-01-06T12:11:08,638 -- Detecting C compile features 2024-01-06T12:11:08,640 -- Detecting C compile features - done 2024-01-06T12:11:09,134 -- Found Python: /usr/bin/python3 (found version "3.9.2") found components: Interpreter Development.Module 2024-01-06T12:11:09,176 -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11") 2024-01-06T12:11:09,185 -- Looking for pthread.h 2024-01-06T12:11:09,479 -- Looking for pthread.h - found 2024-01-06T12:11:09,481 -- Performing Test CMAKE_HAVE_LIBC_PTHREAD 2024-01-06T12:11:09,753 -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed 2024-01-06T12:11:09,755 -- Looking for pthread_create in pthreads 2024-01-06T12:11:09,941 -- Looking for pthread_create in pthreads - not found 2024-01-06T12:11:09,942 -- Looking for pthread_create in pthread 2024-01-06T12:11:10,189 -- Looking for pthread_create in pthread - found 2024-01-06T12:11:10,194 -- Found Threads: TRUE 2024-01-06T12:11:10,202 -- Configuring done 2024-01-06T12:11:10,233 -- Generating done 2024-01-06T12:11:10,252 -- Build files have been written to: /tmp/tmpxgc_ztqm/build 2024-01-06T12:11:10,268 *** Building project with Ninja... 2024-01-06T12:11:10,544 [1/11] Building C object CMakeFiles/get_orfs.dir/src/error.c.o 2024-01-06T12:11:10,794 [2/11] Building C object CMakeFiles/get_orfs.dir/src/seqs_to_ints.c.o 2024-01-06T12:11:10,872 [3/11] Building C object CMakeFiles/PyGeneticCode.dir/src/error.c.o 2024-01-06T12:11:11,005 [4/11] Building C object CMakeFiles/get_orfs.dir/src/translate.c.o 2024-01-06T12:11:11,034 [5/11] Building C object CMakeFiles/PyGeneticCode.dir/src/pygenetic_code.c.o 2024-01-06T12:11:11,225 [6/11] Building C object CMakeFiles/PyGeneticCode.dir/src/seqs_to_ints.c.o 2024-01-06T12:11:11,290 [7/11] Building C object CMakeFiles/get_orfs.dir/src/get_orfs.c.o 2024-01-06T12:11:11,346 [8/11] Building C object CMakeFiles/PyGeneticCode.dir/src/get_orfs.c.o 2024-01-06T12:11:11,411 [9/11] Linking C executable get_orfs 2024-01-06T12:11:11,448 [10/11] Building C object CMakeFiles/PyGeneticCode.dir/src/translate.c.o 2024-01-06T12:11:11,548 [11/11] Linking C shared module PyGeneticCode.cpython-39-arm-linux-gnueabihf.so 2024-01-06T12:11:11,553 *** Installing project into wheel... 2024-01-06T12:11:11,592 -- Install configuration: "Release" 2024-01-06T12:11:11,594 -- Installing: /tmp/tmpxgc_ztqm/wheel/platlib/./PyGeneticCode.cpython-39-arm-linux-gnueabihf.so 2024-01-06T12:11:11,613 *** Making wheel... 2024-01-06T12:11:11,725 *** Created pygenetic_code-0.14-cp39-cp39-manylinux_2_31_armv7l.whl... 2024-01-06T12:11:11,780 Building wheel for pygenetic-code (pyproject.toml): finished with status 'done' 2024-01-06T12:11:11,785 Created wheel for pygenetic-code: filename=pygenetic_code-0.14-cp39-cp39-manylinux_2_31_armv7l.whl size=20848 sha256=81c8f0d43d890e8b8d1f3edf93ec7c3b95577671a45046a61901cc6e8968afc0 2024-01-06T12:11:11,786 Stored in directory: /tmp/pip-ephem-wheel-cache-cg3xp5zf/wheels/fb/c4/e0/828b3e2802651dee495cf8cb6cdcf5ce32b855c766cd55862a 2024-01-06T12:11:11,797 Successfully built pygenetic-code 2024-01-06T12:11:11,801 Removed build tracker: '/tmp/pip-build-tracker-xq6q7qgv'