2024-01-06T14:15:31,697 Created temporary directory: /tmp/pip-build-tracker-revazcmp
2024-01-06T14:15:31,698 Initialized build tracking at /tmp/pip-build-tracker-revazcmp
2024-01-06T14:15:31,699 Created build tracker: /tmp/pip-build-tracker-revazcmp
2024-01-06T14:15:31,699 Entered build tracker: /tmp/pip-build-tracker-revazcmp
2024-01-06T14:15:31,699 Created temporary directory: /tmp/pip-wheel-50e76j1g
2024-01-06T14:15:31,704 Created temporary directory: /tmp/pip-ephem-wheel-cache-db1qmkpz
2024-01-06T14:15:31,727 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-01-06T14:15:31,731 2 location(s) to search for versions of pygenetic-code:
2024-01-06T14:15:31,731 * https://pypi.org/simple/pygenetic-code/
2024-01-06T14:15:31,731 * https://www.piwheels.org/simple/pygenetic-code/
2024-01-06T14:15:31,731 Fetching project page and analyzing links: https://pypi.org/simple/pygenetic-code/
2024-01-06T14:15:31,732 Getting page https://pypi.org/simple/pygenetic-code/
2024-01-06T14:15:31,733 Found index url https://pypi.org/simple/
2024-01-06T14:15:31,860 Fetched page https://pypi.org/simple/pygenetic-code/ as application/vnd.pypi.simple.v1+json
2024-01-06T14:15:31,863   Found link https://files.pythonhosted.org/packages/84/a1/cc8e872bc8e528b41332f1fab947d9602df53d40791107f6e90617080184/pygenetic_code-0.1.tar.gz (from https://pypi.org/simple/pygenetic-code/), version: 0.1
2024-01-06T14:15:31,863   Skipping link: No binaries permitted for pygenetic-code: https://files.pythonhosted.org/packages/60/74/3de8b3f7823254cc6a7ca4fa3328b71a80eb0a3ab116418577a3f7034b85/pygenetic_code-0.12-py3-none-any.whl (from https://pypi.org/simple/pygenetic-code/)
2024-01-06T14:15:31,863   Found link https://files.pythonhosted.org/packages/d1/ba/422310256df438c65366a0fb9ac06223f2de825c492593ef1a0515bb155f/pygenetic_code-0.12.tar.gz (from https://pypi.org/simple/pygenetic-code/), version: 0.12
2024-01-06T14:15:31,864   Skipping link: No binaries permitted for pygenetic-code: https://files.pythonhosted.org/packages/3f/de/3956838a090b1192897fa5a96db2644fb86f0ce706ef6711e5c36d334ffd/pygenetic_code-0.13-py3-none-any.whl (from https://pypi.org/simple/pygenetic-code/)
2024-01-06T14:15:31,864   Found link https://files.pythonhosted.org/packages/4b/65/6a45b507d5c90fbf58361fe51c89682a41a599517ebb82a1ef973af2bfe5/pygenetic_code-0.13.tar.gz (from https://pypi.org/simple/pygenetic-code/), version: 0.13
2024-01-06T14:15:31,864   Skipping link: No binaries permitted for pygenetic-code: https://files.pythonhosted.org/packages/45/32/7da0871bf6bacb18bad69098225a36fe722abf9ce25a5425e2613464f684/pygenetic_code-0.14-cp312-cp312-manylinux_2_35_x86_64.whl (from https://pypi.org/simple/pygenetic-code/)
2024-01-06T14:15:31,864   Found link https://files.pythonhosted.org/packages/b8/59/12e920bb85a3e63484bee6a9f19540c123d13141d90278d9df3fee2657b0/pygenetic_code-0.14.tar.gz (from https://pypi.org/simple/pygenetic-code/), version: 0.14
2024-01-06T14:15:31,865   Skipping link: No binaries permitted for pygenetic-code: https://files.pythonhosted.org/packages/96/56/8807d2e99754f6fb3b42e7f222645de44b3236175932883b81034e5187bc/pygenetic_code-0.16.0-cp312-cp312-manylinux_2_35_x86_64.whl (from https://pypi.org/simple/pygenetic-code/)
2024-01-06T14:15:31,865   Found link https://files.pythonhosted.org/packages/02/35/313be3eee9901c3f33c6a181ea66780b7d8a3c9e45c94335765f20e7d708/pygenetic_code-0.16.0.tar.gz (from https://pypi.org/simple/pygenetic-code/), version: 0.16.0
2024-01-06T14:15:31,865   Skipping link: No binaries permitted for pygenetic-code: https://files.pythonhosted.org/packages/3f/2f/785e03d0bdd6b68b73979678af82750864ef1985ebaedff32718b0b63afa/pygenetic_code-0.20.0-cp312-cp312-manylinux_2_35_x86_64.whl (from https://pypi.org/simple/pygenetic-code/)
2024-01-06T14:15:31,865   Found link https://files.pythonhosted.org/packages/b6/6f/034dc48dd7768cb5aecabb4c2b68e5ff48d7fea6ee3fc51fed7a068e7c11/pygenetic_code-0.20.0.tar.gz (from https://pypi.org/simple/pygenetic-code/), version: 0.20.0
2024-01-06T14:15:31,866 Fetching project page and analyzing links: https://www.piwheels.org/simple/pygenetic-code/
2024-01-06T14:15:31,866 Getting page https://www.piwheels.org/simple/pygenetic-code/
2024-01-06T14:15:31,867 Found index url https://www.piwheels.org/simple/
2024-01-06T14:15:31,934 Fetched page https://www.piwheels.org/simple/pygenetic-code/ as text/html
2024-01-06T14:15:31,938   Skipping link: No binaries permitted for pygenetic-code: https://www.piwheels.org/simple/pygenetic-code/pygenetic_code-0.20.0-cp311-cp311-manylinux_2_36_armv7l.whl#sha256=9de71a4b6dd7840b28a0539ef3d97c734ef21843dca2fc9f0679b6ca0f241cd3 (from https://www.piwheels.org/simple/pygenetic-code/)
2024-01-06T14:15:31,938   Skipping link: No binaries permitted for pygenetic-code: https://www.piwheels.org/simple/pygenetic-code/pygenetic_code-0.20.0-cp37-cp37m-manylinux_2_28_armv7l.whl#sha256=3ef914e3a54d38d7252e312db98f448a9c81070b241f10587ad1e0acfcfb4750 (from https://www.piwheels.org/simple/pygenetic-code/)
2024-01-06T14:15:31,938   Skipping link: No binaries permitted for pygenetic-code: https://www.piwheels.org/simple/pygenetic-code/pygenetic_code-0.16.0-cp311-cp311-manylinux_2_36_armv7l.whl#sha256=114e09c52cf6b8c9d2c626fb11da3059baccb7ab6c020acf465f24da8562a9a2 (from https://www.piwheels.org/simple/pygenetic-code/)
2024-01-06T14:15:31,938   Skipping link: No binaries permitted for pygenetic-code: https://www.piwheels.org/simple/pygenetic-code/pygenetic_code-0.16.0-cp37-cp37m-manylinux_2_28_armv7l.whl#sha256=891f4f8c9d52ea9b174da13c913ba62ba619daab5950c9ed3856b7b13bff65e0 (from https://www.piwheels.org/simple/pygenetic-code/)
2024-01-06T14:15:31,939   Skipping link: No binaries permitted for pygenetic-code: https://www.piwheels.org/simple/pygenetic-code/pygenetic_code-0.14-cp311-cp311-manylinux_2_36_armv7l.whl#sha256=1f9897d4aefaaa4785353a29a7be70df14485c4862db8b4cad9b72b2fe4375c6 (from https://www.piwheels.org/simple/pygenetic-code/)
2024-01-06T14:15:31,939   Skipping link: No binaries permitted for pygenetic-code: https://www.piwheels.org/simple/pygenetic-code/pygenetic_code-0.14-cp37-cp37m-manylinux_2_28_armv7l.whl#sha256=f3aef30fe8cfabcd3bd39b27d25b624ec15c47a641f7ae379973528849e5aeea (from https://www.piwheels.org/simple/pygenetic-code/)
2024-01-06T14:15:31,939   Skipping link: No binaries permitted for pygenetic-code: https://www.piwheels.org/simple/pygenetic-code/pygenetic_code-0.14-cp39-cp39-manylinux_2_31_armv7l.whl#sha256=81c8f0d43d890e8b8d1f3edf93ec7c3b95577671a45046a61901cc6e8968afc0 (from https://www.piwheels.org/simple/pygenetic-code/)
2024-01-06T14:15:31,939   Skipping link: No binaries permitted for pygenetic-code: https://www.piwheels.org/simple/pygenetic-code/pygenetic_code-0.13-py3-none-any.whl#sha256=c2dfb0365c143e7bc54e9d740400a9d734d69f6ba1529dca9d46ea49f2d6dc13 (from https://www.piwheels.org/simple/pygenetic-code/)
2024-01-06T14:15:31,939   Skipping link: No binaries permitted for pygenetic-code: https://www.piwheels.org/simple/pygenetic-code/pygenetic_code-0.12-py3-none-any.whl#sha256=30e9f0137d9393a7e979afe9d8619a4e16ba32093e1d658e5bf07dfcd95efa5f (from https://www.piwheels.org/simple/pygenetic-code/)
2024-01-06T14:15:31,940 Skipping link: not a file: https://www.piwheels.org/simple/pygenetic-code/
2024-01-06T14:15:31,940 Skipping link: not a file: https://pypi.org/simple/pygenetic-code/
2024-01-06T14:15:31,958 Given no hashes to check 1 links for project 'pygenetic-code': discarding no candidates
2024-01-06T14:15:31,974 Collecting pygenetic-code==0.16.0
2024-01-06T14:15:31,977   Created temporary directory: /tmp/pip-unpack-rszul27x
2024-01-06T14:15:32,023   Downloading pygenetic_code-0.16.0.tar.gz (1.5 MB)
2024-01-06T14:15:32,286   Added pygenetic-code==0.16.0 from https://files.pythonhosted.org/packages/02/35/313be3eee9901c3f33c6a181ea66780b7d8a3c9e45c94335765f20e7d708/pygenetic_code-0.16.0.tar.gz to build tracker '/tmp/pip-build-tracker-revazcmp'
2024-01-06T14:15:32,290   Created temporary directory: /tmp/pip-build-env-hmyga3_t
2024-01-06T14:15:32,300   Installing build dependencies: started
2024-01-06T14:15:32,301   Running command pip subprocess to install build dependencies
2024-01-06T14:15:33,447   Using pip 23.3 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9)
2024-01-06T14:15:33,984   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-01-06T14:15:34,242   Collecting scikit-build-core
2024-01-06T14:15:34,262     Using cached https://www.piwheels.org/simple/scikit-build-core/scikit_build_core-0.7.1-py3-none-any.whl (136 kB)
2024-01-06T14:15:34,532   Collecting exceptiongroup (from scikit-build-core)
2024-01-06T14:15:34,547     Using cached https://www.piwheels.org/simple/exceptiongroup/exceptiongroup-1.2.0-py3-none-any.whl (16 kB)
2024-01-06T14:15:34,708   Collecting packaging>=20.9 (from scikit-build-core)
2024-01-06T14:15:34,723     Using cached https://www.piwheels.org/simple/packaging/packaging-23.2-py3-none-any.whl (53 kB)
2024-01-06T14:15:34,833   Collecting tomli>=1.1 (from scikit-build-core)
2024-01-06T14:15:34,850     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2024-01-06T14:15:36,613   Installing collected packages: tomli, packaging, exceptiongroup, scikit-build-core
2024-01-06T14:15:37,273   Successfully installed exceptiongroup-1.2.0 packaging-23.2 scikit-build-core-0.7.1 tomli-2.0.1
2024-01-06T14:15:37,453   WARNING: There was an error checking the latest version of pip.
2024-01-06T14:15:37,686   Installing build dependencies: finished with status 'done'
2024-01-06T14:15:37,691   Getting requirements to build wheel: started
2024-01-06T14:15:37,692   Running command Getting requirements to build wheel
2024-01-06T14:15:38,152   Getting requirements to build wheel: finished with status 'done'
2024-01-06T14:15:38,170   Installing backend dependencies: started
2024-01-06T14:15:38,171   Running command pip subprocess to install backend dependencies
2024-01-06T14:15:39,325   Using pip 23.3 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9)
2024-01-06T14:15:39,860   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-01-06T14:15:40,043   Collecting pyproject_metadata
2024-01-06T14:15:40,060     Using cached https://www.piwheels.org/simple/pyproject-metadata/pyproject_metadata-0.7.1-py3-none-any.whl (7.4 kB)
2024-01-06T14:15:40,171   Collecting pathspec
2024-01-06T14:15:40,187     Using cached https://www.piwheels.org/simple/pathspec/pathspec-0.12.1-py3-none-any.whl (31 kB)
2024-01-06T14:15:40,387   Collecting packaging>=19.0 (from pyproject_metadata)
2024-01-06T14:15:40,402     Using cached https://www.piwheels.org/simple/packaging/packaging-23.2-py3-none-any.whl (53 kB)
2024-01-06T14:15:42,037   Installing collected packages: pathspec, packaging, pyproject_metadata
2024-01-06T14:15:42,297   Successfully installed packaging-23.2 pathspec-0.12.1 pyproject_metadata-0.7.1
2024-01-06T14:15:42,476   WARNING: There was an error checking the latest version of pip.
2024-01-06T14:15:42,700   Installing backend dependencies: finished with status 'done'
2024-01-06T14:15:42,702   Created temporary directory: /tmp/pip-modern-metadata-aaogocp7
2024-01-06T14:15:42,705   Preparing metadata (pyproject.toml): started
2024-01-06T14:15:42,706   Running command Preparing metadata (pyproject.toml)
2024-01-06T14:15:43,262   *** scikit-build-core 0.7.1 using CMake 3.18.4 (metadata_wheel)
2024-01-06T14:15:43,353   Preparing metadata (pyproject.toml): finished with status 'done'
2024-01-06T14:15:43,359   Source in /tmp/pip-wheel-50e76j1g/pygenetic-code_8d53373b6cb547bf8c7ef9438a73f9e8 has version 0.16.0, which satisfies requirement pygenetic-code==0.16.0 from https://files.pythonhosted.org/packages/02/35/313be3eee9901c3f33c6a181ea66780b7d8a3c9e45c94335765f20e7d708/pygenetic_code-0.16.0.tar.gz
2024-01-06T14:15:43,360   Removed pygenetic-code==0.16.0 from https://files.pythonhosted.org/packages/02/35/313be3eee9901c3f33c6a181ea66780b7d8a3c9e45c94335765f20e7d708/pygenetic_code-0.16.0.tar.gz from build tracker '/tmp/pip-build-tracker-revazcmp'
2024-01-06T14:15:43,364 Created temporary directory: /tmp/pip-unpack-1_mdhjkc
2024-01-06T14:15:43,365 Created temporary directory: /tmp/pip-unpack-61e2z43n
2024-01-06T14:15:43,367 Building wheels for collected packages: pygenetic-code
2024-01-06T14:15:43,371   Created temporary directory: /tmp/pip-wheel-vkjgjg1a
2024-01-06T14:15:43,372   Destination directory: /tmp/pip-wheel-vkjgjg1a
2024-01-06T14:15:43,374   Building wheel for pygenetic-code (pyproject.toml): started
2024-01-06T14:15:43,375   Running command Building wheel for pygenetic-code (pyproject.toml)
2024-01-06T14:15:43,874   *** scikit-build-core 0.7.1 using CMake 3.18.4 (wheel)
2024-01-06T14:15:43,900   *** Configuring CMake...
2024-01-06T14:15:44,012   loading initial cache file /tmp/tmpdqu1qf98/build/CMakeInit.txt
2024-01-06T14:15:44,271   -- The C compiler identification is GNU 10.2.1
2024-01-06T14:15:44,316   -- Detecting C compiler ABI info
2024-01-06T14:15:44,571   -- Detecting C compiler ABI info - done
2024-01-06T14:15:44,626   -- Check for working C compiler: /usr/bin/cc - skipped
2024-01-06T14:15:44,627   -- Detecting C compile features
2024-01-06T14:15:44,629   -- Detecting C compile features - done
2024-01-06T14:15:45,113   -- Found Python: /usr/bin/python3 (found version "3.9.2") found components: Interpreter Development.Module
2024-01-06T14:15:45,156   -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11")
2024-01-06T14:15:45,164   -- Looking for pthread.h
2024-01-06T14:15:45,462   -- Looking for pthread.h - found
2024-01-06T14:15:45,464   -- Performing Test CMAKE_HAVE_LIBC_PTHREAD
2024-01-06T14:15:45,722   -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
2024-01-06T14:15:45,724   -- Looking for pthread_create in pthreads
2024-01-06T14:15:45,904   -- Looking for pthread_create in pthreads - not found
2024-01-06T14:15:45,905   -- Looking for pthread_create in pthread
2024-01-06T14:15:46,163   -- Looking for pthread_create in pthread - found
2024-01-06T14:15:46,170   -- Found Threads: TRUE
2024-01-06T14:15:46,181   -- Configuring done
2024-01-06T14:15:46,216   -- Generating done
2024-01-06T14:15:46,236   -- Build files have been written to: /tmp/tmpdqu1qf98/build
2024-01-06T14:15:46,252   *** Building project with Ninja...
2024-01-06T14:15:46,500   [1/11] Building C object CMakeFiles/get_orfs.dir/src/error.c.o
2024-01-06T14:15:46,707   [2/11] Building C object CMakeFiles/PyGeneticCode.dir/src/error.c.o
2024-01-06T14:15:46,797   [3/11] Building C object CMakeFiles/get_orfs.dir/src/seqs_to_ints.c.o
2024-01-06T14:15:47,140   [4/11] Building C object CMakeFiles/get_orfs.dir/src/translate.c.o
2024-01-06T14:15:47,213   [5/11] Building C object CMakeFiles/PyGeneticCode.dir/src/pygenetic_code.c.o
2024-01-06T14:15:47,213   /tmp/pip-wheel-50e76j1g/pygenetic-code_8d53373b6cb547bf8c7ef9438a73f9e8/src/pygenetic_code.c: In function ‘translate_one_frame’:
2024-01-06T14:15:47,214   /tmp/pip-wheel-50e76j1g/pygenetic-code_8d53373b6cb547bf8c7ef9438a73f9e8/src/pygenetic_code.c:37:5: warning: implicit declaration of function ‘encode_sequence’ [-Wimplicit-function-declaration]
2024-01-06T14:15:47,214      37 |     encode_sequence(seq, enc);
2024-01-06T14:15:47,214         |     ^~~~~~~~~~~~~~~
2024-01-06T14:15:47,281   [6/11] Building C object CMakeFiles/PyGeneticCode.dir/src/seqs_to_ints.c.o
2024-01-06T14:15:47,347   [7/11] Building C object CMakeFiles/PyGeneticCode.dir/src/get_orfs.c.o
2024-01-06T14:15:47,400   [8/11] Building C object CMakeFiles/get_orfs.dir/src/get_orfs.c.o
2024-01-06T14:15:47,517   [9/11] Linking C executable get_orfs
2024-01-06T14:15:47,537   [10/11] Building C object CMakeFiles/PyGeneticCode.dir/src/translate.c.o
2024-01-06T14:15:47,638   [11/11] Linking C shared module PyGeneticCode.cpython-39-arm-linux-gnueabihf.so
2024-01-06T14:15:47,643   *** Installing project into wheel...
2024-01-06T14:15:47,682   -- Install configuration: "Release"
2024-01-06T14:15:47,684   -- Installing: /tmp/tmpdqu1qf98/wheel/platlib/./PyGeneticCode.cpython-39-arm-linux-gnueabihf.so
2024-01-06T14:15:47,704   *** Making wheel...
2024-01-06T14:15:47,823   *** Created pygenetic_code-0.16.0-cp39-cp39-manylinux_2_31_armv7l.whl...
2024-01-06T14:15:47,879   Building wheel for pygenetic-code (pyproject.toml): finished with status 'done'
2024-01-06T14:15:47,884   Created wheel for pygenetic-code: filename=pygenetic_code-0.16.0-cp39-cp39-manylinux_2_31_armv7l.whl size=23446 sha256=4e9c5a77e5c338ea6dd6e383c49f79b99a99398c6a69f89b99f70e8d88a1638e
2024-01-06T14:15:47,885   Stored in directory: /tmp/pip-ephem-wheel-cache-db1qmkpz/wheels/54/4f/04/28a1f9c3e9bdcb285b661f6bf9034896165ea7d1b431f89b34
2024-01-06T14:15:47,897 Successfully built pygenetic-code
2024-01-06T14:15:47,900 Removed build tracker: '/tmp/pip-build-tracker-revazcmp'