2024-01-06T15:20:33,387 Created temporary directory: /tmp/pip-build-tracker-gp7ofsbl
2024-01-06T15:20:33,388 Initialized build tracking at /tmp/pip-build-tracker-gp7ofsbl
2024-01-06T15:20:33,388 Created build tracker: /tmp/pip-build-tracker-gp7ofsbl
2024-01-06T15:20:33,388 Entered build tracker: /tmp/pip-build-tracker-gp7ofsbl
2024-01-06T15:20:33,389 Created temporary directory: /tmp/pip-wheel-gkxqbd_u
2024-01-06T15:20:33,394 Created temporary directory: /tmp/pip-ephem-wheel-cache-2wbmxd0m
2024-01-06T15:20:33,421 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-01-06T15:20:33,424 2 location(s) to search for versions of pygenetic-code:
2024-01-06T15:20:33,424 * https://pypi.org/simple/pygenetic-code/
2024-01-06T15:20:33,424 * https://www.piwheels.org/simple/pygenetic-code/
2024-01-06T15:20:33,425 Fetching project page and analyzing links: https://pypi.org/simple/pygenetic-code/
2024-01-06T15:20:33,425 Getting page https://pypi.org/simple/pygenetic-code/
2024-01-06T15:20:33,427 Found index url https://pypi.org/simple/
2024-01-06T15:20:33,556 Fetched page https://pypi.org/simple/pygenetic-code/ as application/vnd.pypi.simple.v1+json
2024-01-06T15:20:33,559   Found link https://files.pythonhosted.org/packages/84/a1/cc8e872bc8e528b41332f1fab947d9602df53d40791107f6e90617080184/pygenetic_code-0.1.tar.gz (from https://pypi.org/simple/pygenetic-code/), version: 0.1
2024-01-06T15:20:33,559   Skipping link: No binaries permitted for pygenetic-code: https://files.pythonhosted.org/packages/60/74/3de8b3f7823254cc6a7ca4fa3328b71a80eb0a3ab116418577a3f7034b85/pygenetic_code-0.12-py3-none-any.whl (from https://pypi.org/simple/pygenetic-code/)
2024-01-06T15:20:33,560   Found link https://files.pythonhosted.org/packages/d1/ba/422310256df438c65366a0fb9ac06223f2de825c492593ef1a0515bb155f/pygenetic_code-0.12.tar.gz (from https://pypi.org/simple/pygenetic-code/), version: 0.12
2024-01-06T15:20:33,560   Skipping link: No binaries permitted for pygenetic-code: https://files.pythonhosted.org/packages/3f/de/3956838a090b1192897fa5a96db2644fb86f0ce706ef6711e5c36d334ffd/pygenetic_code-0.13-py3-none-any.whl (from https://pypi.org/simple/pygenetic-code/)
2024-01-06T15:20:33,560   Found link https://files.pythonhosted.org/packages/4b/65/6a45b507d5c90fbf58361fe51c89682a41a599517ebb82a1ef973af2bfe5/pygenetic_code-0.13.tar.gz (from https://pypi.org/simple/pygenetic-code/), version: 0.13
2024-01-06T15:20:33,560   Skipping link: No binaries permitted for pygenetic-code: https://files.pythonhosted.org/packages/45/32/7da0871bf6bacb18bad69098225a36fe722abf9ce25a5425e2613464f684/pygenetic_code-0.14-cp312-cp312-manylinux_2_35_x86_64.whl (from https://pypi.org/simple/pygenetic-code/)
2024-01-06T15:20:33,561   Found link https://files.pythonhosted.org/packages/b8/59/12e920bb85a3e63484bee6a9f19540c123d13141d90278d9df3fee2657b0/pygenetic_code-0.14.tar.gz (from https://pypi.org/simple/pygenetic-code/), version: 0.14
2024-01-06T15:20:33,561   Skipping link: No binaries permitted for pygenetic-code: https://files.pythonhosted.org/packages/96/56/8807d2e99754f6fb3b42e7f222645de44b3236175932883b81034e5187bc/pygenetic_code-0.16.0-cp312-cp312-manylinux_2_35_x86_64.whl (from https://pypi.org/simple/pygenetic-code/)
2024-01-06T15:20:33,561   Found link https://files.pythonhosted.org/packages/02/35/313be3eee9901c3f33c6a181ea66780b7d8a3c9e45c94335765f20e7d708/pygenetic_code-0.16.0.tar.gz (from https://pypi.org/simple/pygenetic-code/), version: 0.16.0
2024-01-06T15:20:33,561   Skipping link: No binaries permitted for pygenetic-code: https://files.pythonhosted.org/packages/3f/2f/785e03d0bdd6b68b73979678af82750864ef1985ebaedff32718b0b63afa/pygenetic_code-0.20.0-cp312-cp312-manylinux_2_35_x86_64.whl (from https://pypi.org/simple/pygenetic-code/)
2024-01-06T15:20:33,561   Found link https://files.pythonhosted.org/packages/b6/6f/034dc48dd7768cb5aecabb4c2b68e5ff48d7fea6ee3fc51fed7a068e7c11/pygenetic_code-0.20.0.tar.gz (from https://pypi.org/simple/pygenetic-code/), version: 0.20.0
2024-01-06T15:20:33,562 Fetching project page and analyzing links: https://www.piwheels.org/simple/pygenetic-code/
2024-01-06T15:20:33,562 Getting page https://www.piwheels.org/simple/pygenetic-code/
2024-01-06T15:20:33,563 Found index url https://www.piwheels.org/simple/
2024-01-06T15:20:33,634 Fetched page https://www.piwheels.org/simple/pygenetic-code/ as text/html
2024-01-06T15:20:33,638   Skipping link: No binaries permitted for pygenetic-code: https://www.piwheels.org/simple/pygenetic-code/pygenetic_code-0.20.0-cp311-cp311-manylinux_2_36_armv7l.whl#sha256=9de71a4b6dd7840b28a0539ef3d97c734ef21843dca2fc9f0679b6ca0f241cd3 (from https://www.piwheels.org/simple/pygenetic-code/)
2024-01-06T15:20:33,639   Skipping link: No binaries permitted for pygenetic-code: https://www.piwheels.org/simple/pygenetic-code/pygenetic_code-0.20.0-cp37-cp37m-manylinux_2_28_armv7l.whl#sha256=3ef914e3a54d38d7252e312db98f448a9c81070b241f10587ad1e0acfcfb4750 (from https://www.piwheels.org/simple/pygenetic-code/)
2024-01-06T15:20:33,639   Skipping link: No binaries permitted for pygenetic-code: https://www.piwheels.org/simple/pygenetic-code/pygenetic_code-0.16.0-cp311-cp311-manylinux_2_36_armv7l.whl#sha256=114e09c52cf6b8c9d2c626fb11da3059baccb7ab6c020acf465f24da8562a9a2 (from https://www.piwheels.org/simple/pygenetic-code/)
2024-01-06T15:20:33,639   Skipping link: No binaries permitted for pygenetic-code: https://www.piwheels.org/simple/pygenetic-code/pygenetic_code-0.16.0-cp37-cp37m-manylinux_2_28_armv7l.whl#sha256=891f4f8c9d52ea9b174da13c913ba62ba619daab5950c9ed3856b7b13bff65e0 (from https://www.piwheels.org/simple/pygenetic-code/)
2024-01-06T15:20:33,639   Skipping link: No binaries permitted for pygenetic-code: https://www.piwheels.org/simple/pygenetic-code/pygenetic_code-0.16.0-cp39-cp39-manylinux_2_31_armv7l.whl#sha256=4e9c5a77e5c338ea6dd6e383c49f79b99a99398c6a69f89b99f70e8d88a1638e (from https://www.piwheels.org/simple/pygenetic-code/)
2024-01-06T15:20:33,639   Skipping link: No binaries permitted for pygenetic-code: https://www.piwheels.org/simple/pygenetic-code/pygenetic_code-0.14-cp311-cp311-manylinux_2_36_armv7l.whl#sha256=1f9897d4aefaaa4785353a29a7be70df14485c4862db8b4cad9b72b2fe4375c6 (from https://www.piwheels.org/simple/pygenetic-code/)
2024-01-06T15:20:33,640   Skipping link: No binaries permitted for pygenetic-code: https://www.piwheels.org/simple/pygenetic-code/pygenetic_code-0.14-cp37-cp37m-manylinux_2_28_armv7l.whl#sha256=f3aef30fe8cfabcd3bd39b27d25b624ec15c47a641f7ae379973528849e5aeea (from https://www.piwheels.org/simple/pygenetic-code/)
2024-01-06T15:20:33,640   Skipping link: No binaries permitted for pygenetic-code: https://www.piwheels.org/simple/pygenetic-code/pygenetic_code-0.14-cp39-cp39-manylinux_2_31_armv7l.whl#sha256=81c8f0d43d890e8b8d1f3edf93ec7c3b95577671a45046a61901cc6e8968afc0 (from https://www.piwheels.org/simple/pygenetic-code/)
2024-01-06T15:20:33,640   Skipping link: No binaries permitted for pygenetic-code: https://www.piwheels.org/simple/pygenetic-code/pygenetic_code-0.13-py3-none-any.whl#sha256=c2dfb0365c143e7bc54e9d740400a9d734d69f6ba1529dca9d46ea49f2d6dc13 (from https://www.piwheels.org/simple/pygenetic-code/)
2024-01-06T15:20:33,640   Skipping link: No binaries permitted for pygenetic-code: https://www.piwheels.org/simple/pygenetic-code/pygenetic_code-0.12-py3-none-any.whl#sha256=30e9f0137d9393a7e979afe9d8619a4e16ba32093e1d658e5bf07dfcd95efa5f (from https://www.piwheels.org/simple/pygenetic-code/)
2024-01-06T15:20:33,640 Skipping link: not a file: https://www.piwheels.org/simple/pygenetic-code/
2024-01-06T15:20:33,641 Skipping link: not a file: https://pypi.org/simple/pygenetic-code/
2024-01-06T15:20:33,659 Given no hashes to check 1 links for project 'pygenetic-code': discarding no candidates
2024-01-06T15:20:33,676 Collecting pygenetic-code==0.20.0
2024-01-06T15:20:33,678   Created temporary directory: /tmp/pip-unpack-8vk7b_do
2024-01-06T15:20:33,729   Downloading pygenetic_code-0.20.0.tar.gz (1.5 MB)
2024-01-06T15:20:33,965   Added pygenetic-code==0.20.0 from https://files.pythonhosted.org/packages/b6/6f/034dc48dd7768cb5aecabb4c2b68e5ff48d7fea6ee3fc51fed7a068e7c11/pygenetic_code-0.20.0.tar.gz to build tracker '/tmp/pip-build-tracker-gp7ofsbl'
2024-01-06T15:20:33,969   Created temporary directory: /tmp/pip-build-env-y5rih2c6
2024-01-06T15:20:33,979   Installing build dependencies: started
2024-01-06T15:20:33,979   Running command pip subprocess to install build dependencies
2024-01-06T15:20:35,143   Using pip 23.3 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9)
2024-01-06T15:20:35,678   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-01-06T15:20:35,938   Collecting scikit-build-core
2024-01-06T15:20:35,955     Using cached https://www.piwheels.org/simple/scikit-build-core/scikit_build_core-0.7.1-py3-none-any.whl (136 kB)
2024-01-06T15:20:36,225   Collecting exceptiongroup (from scikit-build-core)
2024-01-06T15:20:36,244     Using cached https://www.piwheels.org/simple/exceptiongroup/exceptiongroup-1.2.0-py3-none-any.whl (16 kB)
2024-01-06T15:20:36,406   Collecting packaging>=20.9 (from scikit-build-core)
2024-01-06T15:20:36,422     Using cached https://www.piwheels.org/simple/packaging/packaging-23.2-py3-none-any.whl (53 kB)
2024-01-06T15:20:36,533   Collecting tomli>=1.1 (from scikit-build-core)
2024-01-06T15:20:36,548     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2024-01-06T15:20:38,324   Installing collected packages: tomli, packaging, exceptiongroup, scikit-build-core
2024-01-06T15:20:38,993   Successfully installed exceptiongroup-1.2.0 packaging-23.2 scikit-build-core-0.7.1 tomli-2.0.1
2024-01-06T15:20:39,172   WARNING: There was an error checking the latest version of pip.
2024-01-06T15:20:39,408   Installing build dependencies: finished with status 'done'
2024-01-06T15:20:39,413   Getting requirements to build wheel: started
2024-01-06T15:20:39,414   Running command Getting requirements to build wheel
2024-01-06T15:20:39,840   Getting requirements to build wheel: finished with status 'done'
2024-01-06T15:20:39,857   Installing backend dependencies: started
2024-01-06T15:20:39,858   Running command pip subprocess to install backend dependencies
2024-01-06T15:20:41,010   Using pip 23.3 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9)
2024-01-06T15:20:41,540   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-01-06T15:20:41,731   Collecting pyproject_metadata
2024-01-06T15:20:41,747     Using cached https://www.piwheels.org/simple/pyproject-metadata/pyproject_metadata-0.7.1-py3-none-any.whl (7.4 kB)
2024-01-06T15:20:41,859   Collecting pathspec
2024-01-06T15:20:41,875     Using cached https://www.piwheels.org/simple/pathspec/pathspec-0.12.1-py3-none-any.whl (31 kB)
2024-01-06T15:20:42,074   Collecting packaging>=19.0 (from pyproject_metadata)
2024-01-06T15:20:42,088     Using cached https://www.piwheels.org/simple/packaging/packaging-23.2-py3-none-any.whl (53 kB)
2024-01-06T15:20:43,755   Installing collected packages: pathspec, packaging, pyproject_metadata
2024-01-06T15:20:44,027   Successfully installed packaging-23.2 pathspec-0.12.1 pyproject_metadata-0.7.1
2024-01-06T15:20:44,207   WARNING: There was an error checking the latest version of pip.
2024-01-06T15:20:44,433   Installing backend dependencies: finished with status 'done'
2024-01-06T15:20:44,436   Created temporary directory: /tmp/pip-modern-metadata-hdlpcc_x
2024-01-06T15:20:44,438   Preparing metadata (pyproject.toml): started
2024-01-06T15:20:44,439   Running command Preparing metadata (pyproject.toml)
2024-01-06T15:20:44,956   *** scikit-build-core 0.7.1 using CMake 3.18.4 (metadata_wheel)
2024-01-06T15:20:45,043   Preparing metadata (pyproject.toml): finished with status 'done'
2024-01-06T15:20:45,049   Source in /tmp/pip-wheel-gkxqbd_u/pygenetic-code_02e766dcabb84c0b9ea5c5a4670c4904 has version 0.20.0, which satisfies requirement pygenetic-code==0.20.0 from https://files.pythonhosted.org/packages/b6/6f/034dc48dd7768cb5aecabb4c2b68e5ff48d7fea6ee3fc51fed7a068e7c11/pygenetic_code-0.20.0.tar.gz
2024-01-06T15:20:45,050   Removed pygenetic-code==0.20.0 from https://files.pythonhosted.org/packages/b6/6f/034dc48dd7768cb5aecabb4c2b68e5ff48d7fea6ee3fc51fed7a068e7c11/pygenetic_code-0.20.0.tar.gz from build tracker '/tmp/pip-build-tracker-gp7ofsbl'
2024-01-06T15:20:45,054 Created temporary directory: /tmp/pip-unpack-e3n2x83g
2024-01-06T15:20:45,055 Created temporary directory: /tmp/pip-unpack-nr2icumk
2024-01-06T15:20:45,058 Building wheels for collected packages: pygenetic-code
2024-01-06T15:20:45,062   Created temporary directory: /tmp/pip-wheel-425d9qpa
2024-01-06T15:20:45,062   Destination directory: /tmp/pip-wheel-425d9qpa
2024-01-06T15:20:45,064   Building wheel for pygenetic-code (pyproject.toml): started
2024-01-06T15:20:45,065   Running command Building wheel for pygenetic-code (pyproject.toml)
2024-01-06T15:20:45,571   *** scikit-build-core 0.7.1 using CMake 3.18.4 (wheel)
2024-01-06T15:20:45,594   *** Configuring CMake...
2024-01-06T15:20:45,706   loading initial cache file /tmp/tmpmmhu8nb5/build/CMakeInit.txt
2024-01-06T15:20:45,984   -- The C compiler identification is GNU 10.2.1
2024-01-06T15:20:46,028   -- Detecting C compiler ABI info
2024-01-06T15:20:46,266   -- Detecting C compiler ABI info - done
2024-01-06T15:20:46,309   -- Check for working C compiler: /usr/bin/cc - skipped
2024-01-06T15:20:46,311   -- Detecting C compile features
2024-01-06T15:20:46,312   -- Detecting C compile features - done
2024-01-06T15:20:46,844   -- Found Python: /usr/bin/python3 (found version "3.9.2") found components: Interpreter Development.Module
2024-01-06T15:20:46,885   -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11")
2024-01-06T15:20:46,894   -- Looking for pthread.h
2024-01-06T15:20:47,155   -- Looking for pthread.h - found
2024-01-06T15:20:47,157   -- Performing Test CMAKE_HAVE_LIBC_PTHREAD
2024-01-06T15:20:47,455   -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
2024-01-06T15:20:47,456   -- Looking for pthread_create in pthreads
2024-01-06T15:20:47,640   -- Looking for pthread_create in pthreads - not found
2024-01-06T15:20:47,641   -- Looking for pthread_create in pthread
2024-01-06T15:20:47,891   -- Looking for pthread_create in pthread - found
2024-01-06T15:20:47,896   -- Found Threads: TRUE
2024-01-06T15:20:47,903   -- Configuring done
2024-01-06T15:20:47,929   -- Generating done
2024-01-06T15:20:47,943   -- Build files have been written to: /tmp/tmpmmhu8nb5/build
2024-01-06T15:20:47,955   *** Building project with Ninja...
2024-01-06T15:20:48,277   [1/11] Building C object CMakeFiles/get_orfs.dir/src/error.c.o
2024-01-06T15:20:48,505   [2/11] Building C object CMakeFiles/PyGeneticCode.dir/src/error.c.o
2024-01-06T15:20:48,830   [3/11] Building C object CMakeFiles/get_orfs.dir/src/seqs_to_ints.c.o
2024-01-06T15:20:48,837   [4/11] Building C object CMakeFiles/PyGeneticCode.dir/src/pygenetic_code.c.o
2024-01-06T15:20:48,838   /tmp/pip-wheel-gkxqbd_u/pygenetic-code_02e766dcabb84c0b9ea5c5a4670c4904/src/pygenetic_code.c: In function ‘translate’:
2024-01-06T15:20:48,838   /tmp/pip-wheel-gkxqbd_u/pygenetic-code_02e766dcabb84c0b9ea5c5a4670c4904/src/pygenetic_code.c:37:5: warning: implicit declaration of function ‘parallel_encode_sequence’ [-Wimplicit-function-declaration]
2024-01-06T15:20:48,839      37 |     parallel_encode_sequence(seq, enc, 8);
2024-01-06T15:20:48,839         |     ^~~~~~~~~~~~~~~~~~~~~~~~
2024-01-06T15:20:48,948   [5/11] Building C object CMakeFiles/get_orfs.dir/src/translate.c.o
2024-01-06T15:20:48,978   [6/11] Building C object CMakeFiles/get_orfs.dir/src/get_orfs.c.o
2024-01-06T15:20:49,007   [7/11] Building C object CMakeFiles/PyGeneticCode.dir/src/get_orfs.c.o
2024-01-06T15:20:49,057   [8/11] Building C object CMakeFiles/PyGeneticCode.dir/src/seqs_to_ints.c.o
2024-01-06T15:20:49,118   [9/11] Linking C executable get_orfs
2024-01-06T15:20:49,328   [10/11] Building C object CMakeFiles/PyGeneticCode.dir/src/translate.c.o
2024-01-06T15:20:49,432   [11/11] Linking C shared module PyGeneticCode.cpython-39-arm-linux-gnueabihf.so
2024-01-06T15:20:49,440   *** Installing project into wheel...
2024-01-06T15:20:49,478   -- Install configuration: "Release"
2024-01-06T15:20:49,480   -- Installing: /tmp/tmpmmhu8nb5/wheel/platlib/./PyGeneticCode.cpython-39-arm-linux-gnueabihf.so
2024-01-06T15:20:49,500   *** Making wheel...
2024-01-06T15:20:49,617   *** Created pygenetic_code-0.20.0-cp39-cp39-manylinux_2_31_armv7l.whl...
2024-01-06T15:20:49,673   Building wheel for pygenetic-code (pyproject.toml): finished with status 'done'
2024-01-06T15:20:49,678   Created wheel for pygenetic-code: filename=pygenetic_code-0.20.0-cp39-cp39-manylinux_2_31_armv7l.whl size=24337 sha256=513930aca693b0cc6f9407f3f51a3c9f8b65906e33748302ac328cba98360b73
2024-01-06T15:20:49,679   Stored in directory: /tmp/pip-ephem-wheel-cache-2wbmxd0m/wheels/d2/38/90/c2719985b19befcd8ef8c6de0aad420834c623d52edfcbadaa
2024-01-06T15:20:49,690 Successfully built pygenetic-code
2024-01-06T15:20:49,694 Removed build tracker: '/tmp/pip-build-tracker-gp7ofsbl'