2024-01-06T17:11:14,565 Created temporary directory: /tmp/pip-build-tracker-q3irfsr7
2024-01-06T17:11:14,567 Initialized build tracking at /tmp/pip-build-tracker-q3irfsr7
2024-01-06T17:11:14,567 Created build tracker: /tmp/pip-build-tracker-q3irfsr7
2024-01-06T17:11:14,567 Entered build tracker: /tmp/pip-build-tracker-q3irfsr7
2024-01-06T17:11:14,568 Created temporary directory: /tmp/pip-wheel-w6k_pl22
2024-01-06T17:11:14,572 Created temporary directory: /tmp/pip-ephem-wheel-cache-yt3qb1vk
2024-01-06T17:11:14,595 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-01-06T17:11:14,599 2 location(s) to search for versions of pylammpstrj:
2024-01-06T17:11:14,599 * https://pypi.org/simple/pylammpstrj/
2024-01-06T17:11:14,599 * https://www.piwheels.org/simple/pylammpstrj/
2024-01-06T17:11:14,599 Fetching project page and analyzing links: https://pypi.org/simple/pylammpstrj/
2024-01-06T17:11:14,600 Getting page https://pypi.org/simple/pylammpstrj/
2024-01-06T17:11:14,601 Found index url https://pypi.org/simple/
2024-01-06T17:11:14,651 Fetched page https://pypi.org/simple/pylammpstrj/ as application/vnd.pypi.simple.v1+json
2024-01-06T17:11:14,653   Skipping link: No binaries permitted for pylammpstrj: https://files.pythonhosted.org/packages/a3/57/a114ab4ae001790823689ce9b49c13a914f60f7875e67d7f2d7c5f72e465/pylammpstrj-1.0.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pylammpstrj/) (requires-python:>=3.8)
2024-01-06T17:11:14,653   Found link https://files.pythonhosted.org/packages/22/bb/a0b7cb4ae082fd59081908f259c06d6dc0aa40cd3a00191a1c1ea44422b2/pylammpstrj-1.0.0.tar.gz (from https://pypi.org/simple/pylammpstrj/) (requires-python:>=3.8), version: 1.0.0
2024-01-06T17:11:14,654 Fetching project page and analyzing links: https://www.piwheels.org/simple/pylammpstrj/
2024-01-06T17:11:14,654 Getting page https://www.piwheels.org/simple/pylammpstrj/
2024-01-06T17:11:14,655 Found index url https://www.piwheels.org/simple/
2024-01-06T17:11:14,724 Fetched page https://www.piwheels.org/simple/pylammpstrj/ as text/html
2024-01-06T17:11:14,725 Skipping link: not a file: https://www.piwheels.org/simple/pylammpstrj/
2024-01-06T17:11:14,725 Skipping link: not a file: https://pypi.org/simple/pylammpstrj/
2024-01-06T17:11:14,742 Given no hashes to check 1 links for project 'pylammpstrj': discarding no candidates
2024-01-06T17:11:14,759 Collecting pylammpstrj==1.0.0
2024-01-06T17:11:14,761   Created temporary directory: /tmp/pip-unpack-9ddkzvds
2024-01-06T17:11:14,805   Downloading pylammpstrj-1.0.0.tar.gz (51 kB)
2024-01-06T17:11:14,876   Added pylammpstrj==1.0.0 from https://files.pythonhosted.org/packages/22/bb/a0b7cb4ae082fd59081908f259c06d6dc0aa40cd3a00191a1c1ea44422b2/pylammpstrj-1.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-q3irfsr7'
2024-01-06T17:11:14,879   Created temporary directory: /tmp/pip-build-env-mcqw2re2
2024-01-06T17:11:14,889   Installing build dependencies: started
2024-01-06T17:11:14,890   Running command pip subprocess to install build dependencies
2024-01-06T17:11:16,044   Using pip 23.3 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9)
2024-01-06T17:11:16,578   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-01-06T17:11:18,010   Collecting setuptools
2024-01-06T17:11:18,027     Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.0.3-py3-none-any.whl (819 kB)
2024-01-06T17:11:19,975   Installing collected packages: setuptools
2024-01-06T17:11:22,102   Successfully installed setuptools-69.0.3
2024-01-06T17:11:22,284   WARNING: There was an error checking the latest version of pip.
2024-01-06T17:11:22,553   Installing build dependencies: finished with status 'done'
2024-01-06T17:11:22,558   Getting requirements to build wheel: started
2024-01-06T17:11:22,559   Running command Getting requirements to build wheel
2024-01-06T17:11:23,342   running egg_info
2024-01-06T17:11:23,346   writing pylammpstrj.egg-info/PKG-INFO
2024-01-06T17:11:23,350   writing dependency_links to pylammpstrj.egg-info/dependency_links.txt
2024-01-06T17:11:23,353   writing top-level names to pylammpstrj.egg-info/top_level.txt
2024-01-06T17:11:23,375   reading manifest file 'pylammpstrj.egg-info/SOURCES.txt'
2024-01-06T17:11:23,377   reading manifest template 'MANIFEST.in'
2024-01-06T17:11:23,380   adding license file 'LICENSE'
2024-01-06T17:11:23,383   writing manifest file 'pylammpstrj.egg-info/SOURCES.txt'
2024-01-06T17:11:23,476   Getting requirements to build wheel: finished with status 'done'
2024-01-06T17:11:23,486   Installing backend dependencies: started
2024-01-06T17:11:23,487   Running command pip subprocess to install backend dependencies
2024-01-06T17:11:24,646   Using pip 23.3 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9)
2024-01-06T17:11:25,180   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-01-06T17:11:25,520   Collecting wheel
2024-01-06T17:11:25,535     Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB)
2024-01-06T17:11:27,147   Installing collected packages: wheel
2024-01-06T17:11:27,364     Creating /tmp/pip-build-env-mcqw2re2/normal/bin
2024-01-06T17:11:27,366     changing mode of /tmp/pip-build-env-mcqw2re2/normal/bin/wheel to 755
2024-01-06T17:11:27,379   Successfully installed wheel-0.42.0
2024-01-06T17:11:27,562   WARNING: There was an error checking the latest version of pip.
2024-01-06T17:11:27,785   Installing backend dependencies: finished with status 'done'
2024-01-06T17:11:27,787   Created temporary directory: /tmp/pip-modern-metadata-bz8ca_mu
2024-01-06T17:11:27,790   Preparing metadata (pyproject.toml): started
2024-01-06T17:11:27,791   Running command Preparing metadata (pyproject.toml)
2024-01-06T17:11:28,854   running dist_info
2024-01-06T17:11:28,859   creating /tmp/pip-modern-metadata-bz8ca_mu/pylammpstrj.egg-info
2024-01-06T17:11:28,863   writing /tmp/pip-modern-metadata-bz8ca_mu/pylammpstrj.egg-info/PKG-INFO
2024-01-06T17:11:28,868   writing dependency_links to /tmp/pip-modern-metadata-bz8ca_mu/pylammpstrj.egg-info/dependency_links.txt
2024-01-06T17:11:28,870   writing top-level names to /tmp/pip-modern-metadata-bz8ca_mu/pylammpstrj.egg-info/top_level.txt
2024-01-06T17:11:28,871   writing manifest file '/tmp/pip-modern-metadata-bz8ca_mu/pylammpstrj.egg-info/SOURCES.txt'
2024-01-06T17:11:28,890   reading manifest file '/tmp/pip-modern-metadata-bz8ca_mu/pylammpstrj.egg-info/SOURCES.txt'
2024-01-06T17:11:28,892   reading manifest template 'MANIFEST.in'
2024-01-06T17:11:28,895   adding license file 'LICENSE'
2024-01-06T17:11:28,898   writing manifest file '/tmp/pip-modern-metadata-bz8ca_mu/pylammpstrj.egg-info/SOURCES.txt'
2024-01-06T17:11:28,899   creating '/tmp/pip-modern-metadata-bz8ca_mu/pylammpstrj-1.0.0.dist-info'
2024-01-06T17:11:29,034   Preparing metadata (pyproject.toml): finished with status 'done'
2024-01-06T17:11:29,044   Source in /tmp/pip-wheel-w6k_pl22/pylammpstrj_6972f296ee9f4b0ebe013ef3ab3e5725 has version 1.0.0, which satisfies requirement pylammpstrj==1.0.0 from https://files.pythonhosted.org/packages/22/bb/a0b7cb4ae082fd59081908f259c06d6dc0aa40cd3a00191a1c1ea44422b2/pylammpstrj-1.0.0.tar.gz
2024-01-06T17:11:29,045   Removed pylammpstrj==1.0.0 from https://files.pythonhosted.org/packages/22/bb/a0b7cb4ae082fd59081908f259c06d6dc0aa40cd3a00191a1c1ea44422b2/pylammpstrj-1.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-q3irfsr7'
2024-01-06T17:11:29,054 Created temporary directory: /tmp/pip-unpack-tpnf1q4p
2024-01-06T17:11:29,055 Created temporary directory: /tmp/pip-unpack-0b1wgt3z
2024-01-06T17:11:29,061 Building wheels for collected packages: pylammpstrj
2024-01-06T17:11:29,065   Created temporary directory: /tmp/pip-wheel-ugofb_cf
2024-01-06T17:11:29,065   Destination directory: /tmp/pip-wheel-ugofb_cf
2024-01-06T17:11:29,067   Building wheel for pylammpstrj (pyproject.toml): started
2024-01-06T17:11:29,068   Running command Building wheel for pylammpstrj (pyproject.toml)
2024-01-06T17:11:29,844   running bdist_wheel
2024-01-06T17:11:29,861   running build
2024-01-06T17:11:29,861   running build_py
2024-01-06T17:11:29,867   running egg_info
2024-01-06T17:11:29,870   writing pylammpstrj.egg-info/PKG-INFO
2024-01-06T17:11:29,874   writing dependency_links to pylammpstrj.egg-info/dependency_links.txt
2024-01-06T17:11:29,876   writing top-level names to pylammpstrj.egg-info/top_level.txt
2024-01-06T17:11:29,886   reading manifest file 'pylammpstrj.egg-info/SOURCES.txt'
2024-01-06T17:11:29,888   reading manifest template 'MANIFEST.in'
2024-01-06T17:11:29,891   adding license file 'LICENSE'
2024-01-06T17:11:29,894   writing manifest file 'pylammpstrj.egg-info/SOURCES.txt'
2024-01-06T17:11:29,898   creating build
2024-01-06T17:11:29,898   creating build/lib.linux-armv7l-cpython-39
2024-01-06T17:11:29,899   creating build/lib.linux-armv7l-cpython-39/pylammpstrj
2024-01-06T17:11:29,900   copying pylammpstrj/pylammpstrjmodule.c -> build/lib.linux-armv7l-cpython-39/pylammpstrj
2024-01-06T17:11:29,903   creating build/lib.linux-armv7l-cpython-39/pylammpstrj/lammpstrj
2024-01-06T17:11:29,904   copying pylammpstrj/lammpstrj/atom.c -> build/lib.linux-armv7l-cpython-39/pylammpstrj/lammpstrj
2024-01-06T17:11:29,906   copying pylammpstrj/lammpstrj/average.c -> build/lib.linux-armv7l-cpython-39/pylammpstrj/lammpstrj
2024-01-06T17:11:29,908   copying pylammpstrj/lammpstrj/box.c -> build/lib.linux-armv7l-cpython-39/pylammpstrj/lammpstrj
2024-01-06T17:11:29,910   copying pylammpstrj/lammpstrj/read.c -> build/lib.linux-armv7l-cpython-39/pylammpstrj/lammpstrj
2024-01-06T17:11:29,913   copying pylammpstrj/lammpstrj/select.c -> build/lib.linux-armv7l-cpython-39/pylammpstrj/lammpstrj
2024-01-06T17:11:29,915   copying pylammpstrj/lammpstrj/skip.c -> build/lib.linux-armv7l-cpython-39/pylammpstrj/lammpstrj
2024-01-06T17:11:29,917   copying pylammpstrj/lammpstrj/trajectory.c -> build/lib.linux-armv7l-cpython-39/pylammpstrj/lammpstrj
2024-01-06T17:11:29,919   creating build/lib.linux-armv7l-cpython-39/pylammpstrj/include
2024-01-06T17:11:29,920   copying pylammpstrj/include/pylammpstrjmodule.h -> build/lib.linux-armv7l-cpython-39/pylammpstrj/include
2024-01-06T17:11:29,922   copying pylammpstrj/include/utils.h -> build/lib.linux-armv7l-cpython-39/pylammpstrj/include
2024-01-06T17:11:29,924   creating build/lib.linux-armv7l-cpython-39/pylammpstrj/lammpstrj/include
2024-01-06T17:11:29,925   copying pylammpstrj/lammpstrj/include/utils.h -> build/lib.linux-armv7l-cpython-39/pylammpstrj/lammpstrj/include
2024-01-06T17:11:29,928   running build_ext
2024-01-06T17:11:29,934   building 'pylammpstrj' extension
2024-01-06T17:11:29,935   creating build/temp.linux-armv7l-cpython-39
2024-01-06T17:11:29,935   creating build/temp.linux-armv7l-cpython-39/pylammpstrj
2024-01-06T17:11:29,936   creating build/temp.linux-armv7l-cpython-39/pylammpstrj/lammpstrj
2024-01-06T17:11:29,937   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipylammpstrj/include/ -I/usr/include/python3.9 -c pylammpstrj/lammpstrj/atom.c -o build/temp.linux-armv7l-cpython-39/pylammpstrj/lammpstrj/atom.o -g -O3 -Wall -Wextra
2024-01-06T17:11:30,077   pylammpstrj/lammpstrj/atom.c: In function ‘str_to_str’:
2024-01-06T17:11:30,078   pylammpstrj/lammpstrj/atom.c:177:5: warning: ‘strncpy’ specified bound 10 equals destination size [-Wstringop-truncation]
2024-01-06T17:11:30,078     177 |     strncpy(af.s, field, ATOM_FIELD_STR_LIMIT);
2024-01-06T17:11:30,078         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-01-06T17:11:30,206   pylammpstrj/lammpstrj/atom.c: In function ‘get_additional_types’:
2024-01-06T17:11:30,206   pylammpstrj/lammpstrj/atom.c:149:5: warning: ‘strncpy’ specified bound 128 equals destination size [-Wstringop-truncation]
2024-01-06T17:11:30,206     149 |     strncpy(buffer, line, READ_BUFFER_LIMIT);
2024-01-06T17:11:30,206         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-01-06T17:11:30,249   pylammpstrj/lammpstrj/atom.c: In function ‘atom_builder_new’:
2024-01-06T17:11:30,250   pylammpstrj/lammpstrj/atom.c:221:5: warning: ‘strncpy’ specified bound 128 equals destination size [-Wstringop-truncation]
2024-01-06T17:11:30,250     221 |     strncpy(ab.dump_format, dump_format, READ_BUFFER_LIMIT);
2024-01-06T17:11:30,250         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-01-06T17:11:30,294   pylammpstrj/lammpstrj/atom.c: In function ‘read_atom_entry’:
2024-01-06T17:11:30,294   pylammpstrj/lammpstrj/atom.c:303:21: warning: ‘strncpy’ output may be truncated copying 3 bytes from a string of length 9 [-Wstringop-truncation]
2024-01-06T17:11:30,294     303 |                     strncpy(atom.label, res.s, LABEL_LIMIT);
2024-01-06T17:11:30,294         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-01-06T17:11:30,421   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipylammpstrj/include/ -I/usr/include/python3.9 -c pylammpstrj/lammpstrj/average.c -o build/temp.linux-armv7l-cpython-39/pylammpstrj/lammpstrj/average.o -g -O3 -Wall -Wextra
2024-01-06T17:11:30,613   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipylammpstrj/include/ -I/usr/include/python3.9 -c pylammpstrj/lammpstrj/box.c -o build/temp.linux-armv7l-cpython-39/pylammpstrj/lammpstrj/box.o -g -O3 -Wall -Wextra
2024-01-06T17:11:30,764   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipylammpstrj/include/ -I/usr/include/python3.9 -c pylammpstrj/lammpstrj/read.c -o build/temp.linux-armv7l-cpython-39/pylammpstrj/lammpstrj/read.o -g -O3 -Wall -Wextra
2024-01-06T17:11:31,236   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipylammpstrj/include/ -I/usr/include/python3.9 -c pylammpstrj/lammpstrj/select.c -o build/temp.linux-armv7l-cpython-39/pylammpstrj/lammpstrj/select.o -g -O3 -Wall -Wextra
2024-01-06T17:11:31,677   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipylammpstrj/include/ -I/usr/include/python3.9 -c pylammpstrj/lammpstrj/skip.c -o build/temp.linux-armv7l-cpython-39/pylammpstrj/lammpstrj/skip.o -g -O3 -Wall -Wextra
2024-01-06T17:11:31,834   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipylammpstrj/include/ -I/usr/include/python3.9 -c pylammpstrj/lammpstrj/trajectory.c -o build/temp.linux-armv7l-cpython-39/pylammpstrj/lammpstrj/trajectory.o -g -O3 -Wall -Wextra
2024-01-06T17:11:31,994   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipylammpstrj/include/ -I/usr/include/python3.9 -c pylammpstrj/pylammpstrjmodule.c -o build/temp.linux-armv7l-cpython-39/pylammpstrj/pylammpstrjmodule.o -g -O3 -Wall -Wextra
2024-01-06T17:11:32,036   pylammpstrj/pylammpstrjmodule.c:2:10: fatal error: python3.8/Python.h: No such file or directory
2024-01-06T17:11:32,036       2 | #include <python3.8/Python.h>
2024-01-06T17:11:32,037         |          ^~~~~~~~~~~~~~~~~~~~
2024-01-06T17:11:32,037   compilation terminated.
2024-01-06T17:11:32,041   error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1
2024-01-06T17:11:32,150   ERROR: Building wheel for pylammpstrj (pyproject.toml) exited with 1
2024-01-06T17:11:32,168   [bold magenta]full command[/]: [blue]/usr/bin/python3 /home/piwheels/.local/lib/python3.9/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmp7niu_l1d[/]
2024-01-06T17:11:32,168   [bold magenta]cwd[/]: /tmp/pip-wheel-w6k_pl22/pylammpstrj_6972f296ee9f4b0ebe013ef3ab3e5725
2024-01-06T17:11:32,168   Building wheel for pylammpstrj (pyproject.toml): finished with status 'error'
2024-01-06T17:11:32,170   ERROR: Failed building wheel for pylammpstrj
2024-01-06T17:11:32,173 Failed to build pylammpstrj
2024-01-06T17:11:32,174 ERROR: Failed to build one or more wheels
2024-01-06T17:11:32,175 Exception information:
2024-01-06T17:11:32,175 Traceback (most recent call last):
2024-01-06T17:11:32,175   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper
2024-01-06T17:11:32,175     status = run_func(*args)
2024-01-06T17:11:32,175   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 245, in wrapper
2024-01-06T17:11:32,175     return func(self, options, args)
2024-01-06T17:11:32,175   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 181, in run
2024-01-06T17:11:32,175     raise CommandError("Failed to build one or more wheels")
2024-01-06T17:11:32,175 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2024-01-06T17:11:32,177 Removed build tracker: '/tmp/pip-build-tracker-q3irfsr7'