2024-01-07T20:31:29,472 Created temporary directory: /tmp/pip-build-tracker-v875yh81 2024-01-07T20:31:29,473 Initialized build tracking at /tmp/pip-build-tracker-v875yh81 2024-01-07T20:31:29,474 Created build tracker: /tmp/pip-build-tracker-v875yh81 2024-01-07T20:31:29,474 Entered build tracker: /tmp/pip-build-tracker-v875yh81 2024-01-07T20:31:29,475 Created temporary directory: /tmp/pip-wheel-ady5lxoq 2024-01-07T20:31:29,478 Created temporary directory: /tmp/pip-ephem-wheel-cache-rtteczf2 2024-01-07T20:31:29,500 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-07T20:31:29,503 2 location(s) to search for versions of mitos: 2024-01-07T20:31:29,503 * https://pypi.org/simple/mitos/ 2024-01-07T20:31:29,503 * https://www.piwheels.org/simple/mitos/ 2024-01-07T20:31:29,504 Fetching project page and analyzing links: https://pypi.org/simple/mitos/ 2024-01-07T20:31:29,505 Getting page https://pypi.org/simple/mitos/ 2024-01-07T20:31:29,506 Found index url https://pypi.org/simple/ 2024-01-07T20:31:29,641 Fetched page https://pypi.org/simple/mitos/ as application/vnd.pypi.simple.v1+json 2024-01-07T20:31:29,647 Skipping link: No binaries permitted for mitos: https://files.pythonhosted.org/packages/ae/2d/5f1e66a046e59cf6088f44d4a02cae66d498e226365af5fd42e2d660a814/mitos-1.0-py2-none-any.whl (from https://pypi.org/simple/mitos/) 2024-01-07T20:31:29,648 Found link https://files.pythonhosted.org/packages/c5/6e/e1aae4079b0ebbce64897f54f5cd4a3953a0cb741026d16e14e7ae272a48/mitos-1.0.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0 2024-01-07T20:31:29,648 Found link https://files.pythonhosted.org/packages/d7/19/816780e09ecc6a783f146d80bcde73eb7940d074f4feea137ec954bfd437/mitos-1.0.1.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.1 2024-01-07T20:31:29,649 Found link https://files.pythonhosted.org/packages/38/c7/3dd90bcf0d61c69226ef1632baa3ad0e96d798de36053b4b56ed7660dfdb/mitos-1.0.2.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.2 2024-01-07T20:31:29,649 Found link https://files.pythonhosted.org/packages/e2/d4/864af2605cc1f45cc78cfed740bbdfba1da59ea9a42c24ef5077c9218501/mitos-1.0.3.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.3 2024-01-07T20:31:29,650 Found link https://files.pythonhosted.org/packages/8d/32/1aa5eb88f964c3cf5441622648cc4ae30f115db32bdd5dc5bf194a3c112c/mitos-1.0.4.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.4 2024-01-07T20:31:29,651 Found link https://files.pythonhosted.org/packages/ff/49/f4c711126604aa86abeeda44378786a0903bc53970acf4afa5feb68f72b8/mitos-1.0.5.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.5 2024-01-07T20:31:29,652 Skipping link: No binaries permitted for mitos: https://files.pythonhosted.org/packages/c3/cd/96e0e1ad1551b8fff56ab89e61231809494dec3ee80f51117b4f5d432452/mitos-1.1.0-py3-none-any.whl (from https://pypi.org/simple/mitos/) 2024-01-07T20:31:29,652 Found link https://files.pythonhosted.org/packages/ce/33/46fd40fd9f4c11f5bf296c2c092f59e36dee233d71a0f032b34c2a64c7ba/mitos-1.1.0.tar.gz (from https://pypi.org/simple/mitos/), version: 1.1.0 2024-01-07T20:31:29,653 Found link https://files.pythonhosted.org/packages/b3/a0/5268d8fec841240195c19e704b552a8b3060768c6710c67c67350ea60f13/mitos-1.1.1.tar.gz (from https://pypi.org/simple/mitos/), version: 1.1.1 2024-01-07T20:31:29,654 Found link https://files.pythonhosted.org/packages/7c/38/4431d42c178a65b3710531867f10ae50c5a49408ccab6c058af277e83e5d/mitos-1.1.2.tar.gz (from https://pypi.org/simple/mitos/), version: 1.1.2 2024-01-07T20:31:29,655 Found link https://files.pythonhosted.org/packages/76/40/e0db56e8dfc65a2a13c8f613c4b5839247b918a1cd5d83b384a6c957928e/mitos-1.1.3.tar.gz (from https://pypi.org/simple/mitos/), version: 1.1.3 2024-01-07T20:31:29,655 Found link https://files.pythonhosted.org/packages/fc/39/368668a4250e85f2a596f996a4067528a2e13ad69d18404d4dac5ca4118f/mitos-1.1.4.tar.gz (from https://pypi.org/simple/mitos/), version: 1.1.4 2024-01-07T20:31:29,656 Found link https://files.pythonhosted.org/packages/f3/fa/7e2b9cef0d99e7792077a4c1116dc9bbe4c085e7b89ea79b74474c00b2b1/mitos-2.0.1.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.1 2024-01-07T20:31:29,657 Found link https://files.pythonhosted.org/packages/d7/53/5d215fe8689055dd329a27202f9dc7f66e23548f3d2ad3fa55d98dc56988/mitos-2.0.2.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.2 2024-01-07T20:31:29,658 Found link https://files.pythonhosted.org/packages/cd/97/a8bf95d5e26b51071d9f342dc475891425b223b6add347a6dbf9412937f1/mitos-2.0.3.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.3 2024-01-07T20:31:29,658 Found link https://files.pythonhosted.org/packages/39/9f/6cdac19a8d50915e2e5285b447077459af9c6524f980ded6657dc205593d/mitos-2.0.4.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.4 2024-01-07T20:31:29,659 Found link https://files.pythonhosted.org/packages/d0/16/8040a37887377e3992b0874ab441af54e16030fd23eb844bbf5293597c99/mitos-2.0.5.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.5 2024-01-07T20:31:29,659 Found link https://files.pythonhosted.org/packages/40/ef/5a93579c1ebc63ca8fe71cfe541bca389a0f9410b9a2c1ceff148f83af79/mitos-2.0.6.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.6 2024-01-07T20:31:29,660 Found link https://files.pythonhosted.org/packages/1f/a2/32eb96227aae3a719794cc922d839b8c38ee5c315087bf095792c48f996d/mitos-2.0.7.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.7 2024-01-07T20:31:29,660 Found link https://files.pythonhosted.org/packages/d5/7f/b3e5c5c83352beb13677186899379de3c50a2222dc8faac16632f600d4b6/mitos-2.0.8.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.8 2024-01-07T20:31:29,661 Skipping link: No binaries permitted for mitos: https://files.pythonhosted.org/packages/9d/93/5f2a1097bfa507acbf7dd6ac677f6df14df61692cccb42d28c34edb7ca5b/mitos-2.1.0-py3-none-any.whl (from https://pypi.org/simple/mitos/) 2024-01-07T20:31:29,662 Found link https://files.pythonhosted.org/packages/f8/f4/2950dea175f0bda896b88ac2ac13007a1d007252a583ddd328b176fb54a5/mitos-2.1.0.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.0 2024-01-07T20:31:29,662 Found link https://files.pythonhosted.org/packages/57/78/2fde036a6c767aa5fb8c1102526af749ee13ad426b295289265c548384f9/mitos-2.1.1.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.1 2024-01-07T20:31:29,663 Found link https://files.pythonhosted.org/packages/74/63/f90f359df86c01e68f5c678eef30d929b9311e7bb80f16071a1532515a0a/mitos-2.1.2.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.2 2024-01-07T20:31:29,664 Found link https://files.pythonhosted.org/packages/d6/1f/b6dbc4704555e91e3efa3184fc90b04e901dc6e787c37091d445dd50bd4b/mitos-2.1.3.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.3 2024-01-07T20:31:29,665 Found link https://files.pythonhosted.org/packages/ff/1f/af7beaaaa133f2f55cdbfbf5430c0e9a3102b101dd0a8d2c6f22376af56b/mitos-2.1.4.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.4 2024-01-07T20:31:29,665 Found link https://files.pythonhosted.org/packages/c9/6d/853d05a3ec8c81c73bb23ba0862ded05aa4c2fdc74cdc796c982c6896476/mitos-2.1.5.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.5 2024-01-07T20:31:29,666 Found link https://files.pythonhosted.org/packages/96/9a/97d5e59e6680b450e24d0c3313f112b8818f7d2f6c6fbc90d685cf7fe47c/mitos-2.1.6.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.6 2024-01-07T20:31:29,667 Fetching project page and analyzing links: https://www.piwheels.org/simple/mitos/ 2024-01-07T20:31:29,668 Getting page https://www.piwheels.org/simple/mitos/ 2024-01-07T20:31:29,669 Found index url https://www.piwheels.org/simple/ 2024-01-07T20:31:29,838 Fetched page https://www.piwheels.org/simple/mitos/ as text/html 2024-01-07T20:31:29,845 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.6-py3-none-any.whl#sha256=bed8aeda4eebf1ce891081ec67cf34897f2e5da8800cfb51c78593616a3304ea (from https://www.piwheels.org/simple/mitos/) 2024-01-07T20:31:29,846 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.5-py3-none-any.whl#sha256=c404e62da7a2d919a7cf0999ba3ce479541d935e38999ed75c09dc9a38f6b6bd (from https://www.piwheels.org/simple/mitos/) 2024-01-07T20:31:29,847 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.4-py3-none-any.whl#sha256=249c87e42350fbefa1e3281d0e81f795c7710a95303b226bdc818b51615162e0 (from https://www.piwheels.org/simple/mitos/) 2024-01-07T20:31:29,848 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.3-py3-none-any.whl#sha256=dd19f4a9b02b695465d7d7861d7f611d1c73f231e6205b881d1617cd733bdd87 (from https://www.piwheels.org/simple/mitos/) 2024-01-07T20:31:29,848 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.2-py3-none-any.whl#sha256=c98234624cb7939861858030fbac10b88073159ea24b334b42e1cfd70254088d (from https://www.piwheels.org/simple/mitos/) 2024-01-07T20:31:29,849 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.1-py3-none-any.whl#sha256=698670abccda0918af0b490888cb195f86172e217766c9672bfedae33666ac82 (from https://www.piwheels.org/simple/mitos/) 2024-01-07T20:31:29,849 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.0-py3-none-any.whl#sha256=d4b006045b98620155cbed38de6ecf0d0ffb030cebc4d6e6e947cb015b8ce746 (from https://www.piwheels.org/simple/mitos/) 2024-01-07T20:31:29,850 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.8-py3-none-any.whl#sha256=5e88aa49c5bba746d511e0e619295e3c59916c71ba94246f984e44dcfef6a06c (from https://www.piwheels.org/simple/mitos/) 2024-01-07T20:31:29,850 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.7-py3-none-any.whl#sha256=97e98856e946735f44b3df83d67645e0dac8b411edb7774df74c00a44832e1d6 (from https://www.piwheels.org/simple/mitos/) 2024-01-07T20:31:29,851 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.6-py3-none-any.whl#sha256=8fba2e7cf9c22c6a728a1f8141764a77a6a4a27d7f7e50106b6e43832857b149 (from https://www.piwheels.org/simple/mitos/) 2024-01-07T20:31:29,851 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.5-py3-none-any.whl#sha256=ed4998969ebae7bf1688b78cdac8f19ca359f123ea79c2acd2654dd454a53f22 (from https://www.piwheels.org/simple/mitos/) 2024-01-07T20:31:29,852 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.4-py3-none-any.whl#sha256=71ac10ffdc0a236d68e4fd82a700ae35a92f0b23a09242c8b99485ccbadb10cc (from https://www.piwheels.org/simple/mitos/) 2024-01-07T20:31:29,853 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.3-py3-none-any.whl#sha256=4da7d3530901e0732adc63ab4afa0c5d9a40558469b2ccee71ea4fbad466603b (from https://www.piwheels.org/simple/mitos/) 2024-01-07T20:31:29,853 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.2-py3-none-any.whl#sha256=0cd775b72e2dca4acf2f9c6f4d591abaeb00b983e4882fcf536d934a8263d342 (from https://www.piwheels.org/simple/mitos/) 2024-01-07T20:31:29,854 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.1-py3-none-any.whl#sha256=307713427f698c0f3449d782d86287f1494fd2ff773a9fc407fbd29a0de53aed (from https://www.piwheels.org/simple/mitos/) 2024-01-07T20:31:29,855 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.1.3-py3-none-any.whl#sha256=92bec0ea93c83f4d494767e69401c1dcc1dd8f562917c3d110ec0a525d142a6a (from https://www.piwheels.org/simple/mitos/) 2024-01-07T20:31:29,855 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.1.2-py3-none-any.whl#sha256=b237b128b553848c12c5d387b10a20bbcb734b8672b3bf56fb2f3995e169c03d (from https://www.piwheels.org/simple/mitos/) 2024-01-07T20:31:29,856 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.1.1-py3-none-any.whl#sha256=f0970e0e530a2a7759daafc81f1c79460dc85d15c1f34551d8394dce187dfe1c (from https://www.piwheels.org/simple/mitos/) 2024-01-07T20:31:29,857 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.1.0-py3-none-any.whl#sha256=424b5172258baf2837d8a45e89224c12fdc3cc2a8f4ba0894e5c74111e754e5d (from https://www.piwheels.org/simple/mitos/) 2024-01-07T20:31:29,858 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.5-py3-none-any.whl#sha256=f27a041efc520420cbffbb63a6c428a2ace092d6ffdc47942d6b9c434a281629 (from https://www.piwheels.org/simple/mitos/) 2024-01-07T20:31:29,858 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.4-py3-none-any.whl#sha256=4c35b6595c7a62189502f6becaed4b2fe147f7ed6c6ee8d6b69fb4fda5e2139a (from https://www.piwheels.org/simple/mitos/) 2024-01-07T20:31:29,859 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.3-py3-none-any.whl#sha256=7b62f2fcef8414d2a429f2f3c033e85c9377805612113e7103fa6793aa083cbc (from https://www.piwheels.org/simple/mitos/) 2024-01-07T20:31:29,859 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.2-py3-none-any.whl#sha256=ba6a5f7a1d3a0a95106d401e13f7639c5ed2ecb367ab7899e2204b14aa9930a1 (from https://www.piwheels.org/simple/mitos/) 2024-01-07T20:31:29,859 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.1-py3-none-any.whl#sha256=d216729f10eb3463d947658451c8f70fd97a9b2ca94cea55221f7a50f85749e2 (from https://www.piwheels.org/simple/mitos/) 2024-01-07T20:31:29,860 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0-py3-none-any.whl#sha256=4f914c63f700f85163b395353782bcb87e49392f63c151f387dd4514694d0ac1 (from https://www.piwheels.org/simple/mitos/) 2024-01-07T20:31:29,860 Skipping link: not a file: https://www.piwheels.org/simple/mitos/ 2024-01-07T20:31:29,861 Skipping link: not a file: https://pypi.org/simple/mitos/ 2024-01-07T20:31:29,883 Given no hashes to check 1 links for project 'mitos': discarding no candidates 2024-01-07T20:31:29,901 Collecting mitos==1.1.4 2024-01-07T20:31:29,903 Created temporary directory: /tmp/pip-unpack-lt8med0c 2024-01-07T20:31:30,116 Downloading mitos-1.1.4.tar.gz (240 kB) 2024-01-07T20:31:30,367 Added mitos==1.1.4 from https://files.pythonhosted.org/packages/fc/39/368668a4250e85f2a596f996a4067528a2e13ad69d18404d4dac5ca4118f/mitos-1.1.4.tar.gz to build tracker '/tmp/pip-build-tracker-v875yh81' 2024-01-07T20:31:30,369 Running setup.py (path:/tmp/pip-wheel-ady5lxoq/mitos_abe1e597c76f4b238282754974afb24b/setup.py) egg_info for package mitos 2024-01-07T20:31:30,370 Created temporary directory: /tmp/pip-pip-egg-info-uupnomfz 2024-01-07T20:31:30,371 Preparing metadata (setup.py): started 2024-01-07T20:31:30,372 Running command python setup.py egg_info 2024-01-07T20:31:31,391 running egg_info 2024-01-07T20:31:31,392 creating /tmp/pip-pip-egg-info-uupnomfz/mitos.egg-info 2024-01-07T20:31:31,416 writing /tmp/pip-pip-egg-info-uupnomfz/mitos.egg-info/PKG-INFO 2024-01-07T20:31:31,419 writing dependency_links to /tmp/pip-pip-egg-info-uupnomfz/mitos.egg-info/dependency_links.txt 2024-01-07T20:31:31,421 writing requirements to /tmp/pip-pip-egg-info-uupnomfz/mitos.egg-info/requires.txt 2024-01-07T20:31:31,422 writing top-level names to /tmp/pip-pip-egg-info-uupnomfz/mitos.egg-info/top_level.txt 2024-01-07T20:31:31,424 writing manifest file '/tmp/pip-pip-egg-info-uupnomfz/mitos.egg-info/SOURCES.txt' 2024-01-07T20:31:31,541 reading manifest file '/tmp/pip-pip-egg-info-uupnomfz/mitos.egg-info/SOURCES.txt' 2024-01-07T20:31:31,542 reading manifest template 'MANIFEST.in' 2024-01-07T20:31:31,545 adding license file 'LICENSE' 2024-01-07T20:31:31,548 writing manifest file '/tmp/pip-pip-egg-info-uupnomfz/mitos.egg-info/SOURCES.txt' 2024-01-07T20:31:31,655 Preparing metadata (setup.py): finished with status 'done' 2024-01-07T20:31:31,659 Source in /tmp/pip-wheel-ady5lxoq/mitos_abe1e597c76f4b238282754974afb24b has version 1.1.4, which satisfies requirement mitos==1.1.4 from https://files.pythonhosted.org/packages/fc/39/368668a4250e85f2a596f996a4067528a2e13ad69d18404d4dac5ca4118f/mitos-1.1.4.tar.gz 2024-01-07T20:31:31,659 Removed mitos==1.1.4 from https://files.pythonhosted.org/packages/fc/39/368668a4250e85f2a596f996a4067528a2e13ad69d18404d4dac5ca4118f/mitos-1.1.4.tar.gz from build tracker '/tmp/pip-build-tracker-v875yh81' 2024-01-07T20:31:31,664 Created temporary directory: /tmp/pip-unpack-oo_i2r7c 2024-01-07T20:31:31,665 Created temporary directory: /tmp/pip-unpack-m74mny8v 2024-01-07T20:31:31,669 Building wheels for collected packages: mitos 2024-01-07T20:31:31,673 Created temporary directory: /tmp/pip-wheel-sikwjzl0 2024-01-07T20:31:31,674 Building wheel for mitos (setup.py): started 2024-01-07T20:31:31,675 Destination directory: /tmp/pip-wheel-sikwjzl0 2024-01-07T20:31:31,675 Running command python setup.py bdist_wheel 2024-01-07T20:31:32,657 running bdist_wheel 2024-01-07T20:31:32,749 running build 2024-01-07T20:31:32,749 running build_py 2024-01-07T20:31:32,776 creating build 2024-01-07T20:31:32,777 creating build/lib 2024-01-07T20:31:32,777 creating build/lib/mitos 2024-01-07T20:31:32,778 copying mitos/mitos-extension.py -> build/lib/mitos 2024-01-07T20:31:32,781 copying mitos/convert_tree.py -> build/lib/mitos 2024-01-07T20:31:32,784 copying mitos/trna-cm.py -> build/lib/mitos 2024-01-07T20:31:32,789 copying mitos/mitoloc.py -> build/lib/mitos 2024-01-07T20:31:32,791 copying mitos/prepareFiles.py -> build/lib/mitos 2024-01-07T20:31:32,793 copying mitos/removegene.py -> build/lib/mitos 2024-01-07T20:31:32,794 copying mitos/mitoch_revisions.py -> build/lib/mitos 2024-01-07T20:31:32,797 copying mitos/create_prot_fasta.py -> build/lib/mitos 2024-01-07T20:31:32,800 copying mitos/update-mitolog.py -> build/lib/mitos 2024-01-07T20:31:32,802 copying mitos/trnadist.py -> build/lib/mitos 2024-01-07T20:31:32,804 copying mitos/update-blastdb.py -> build/lib/mitos 2024-01-07T20:31:32,806 copying mitos/booreparser.py -> build/lib/mitos 2024-01-07T20:31:32,808 copying mitos/ogre-geneorder.py -> build/lib/mitos 2024-01-07T20:31:32,810 copying mitos/skew.py -> build/lib/mitos 2024-01-07T20:31:32,812 copying mitos/CONFIG.py -> build/lib/mitos 2024-01-07T20:31:32,814 copying mitos/inihit.py -> build/lib/mitos 2024-01-07T20:31:32,817 copying mitos/mitos-extension2.py -> build/lib/mitos 2024-01-07T20:31:32,819 copying mitos/__init__.py -> build/lib/mitos 2024-01-07T20:31:32,821 creating build/lib/mitos/trna 2024-01-07T20:31:32,822 copying mitos/trna/trnascan.py -> build/lib/mitos/trna 2024-01-07T20:31:32,825 copying mitos/trna/arwenscan.py -> build/lib/mitos/trna 2024-01-07T20:31:32,827 copying mitos/trna/__init__.py -> build/lib/mitos/trna 2024-01-07T20:31:32,829 creating build/lib/mitos/draw 2024-01-07T20:31:32,830 copying mitos/draw/__init__.py -> build/lib/mitos/draw 2024-01-07T20:31:32,833 creating build/lib/mitos/gb 2024-01-07T20:31:32,834 copying mitos/gb/unify.py -> build/lib/mitos/gb 2024-01-07T20:31:32,836 copying mitos/gb/__init__.py -> build/lib/mitos/gb 2024-01-07T20:31:32,839 creating build/lib/mitos/codon 2024-01-07T20:31:32,840 copying mitos/codon/__init__.py -> build/lib/mitos/codon 2024-01-07T20:31:32,842 creating build/lib/mitos/mitfi 2024-01-07T20:31:32,843 copying mitos/mitfi/__init__.py -> build/lib/mitos/mitfi 2024-01-07T20:31:32,846 creating build/lib/mitos/mergefeature 2024-01-07T20:31:32,847 copying mitos/mergefeature/__init__.py -> build/lib/mitos/mergefeature 2024-01-07T20:31:32,850 creating build/lib/mitos/webserver 2024-01-07T20:31:32,851 copying mitos/webserver/__init__.py -> build/lib/mitos/webserver 2024-01-07T20:31:32,854 creating build/lib/mitos/rna 2024-01-07T20:31:32,855 copying mitos/rna/forester.py -> build/lib/mitos/rna 2024-01-07T20:31:32,857 copying mitos/rna/vienna.py -> build/lib/mitos/rna 2024-01-07T20:31:32,859 copying mitos/rna/__init__.py -> build/lib/mitos/rna 2024-01-07T20:31:32,860 creating build/lib/mitos/util 2024-01-07T20:31:32,861 copying mitos/util/__init__.py -> build/lib/mitos/util 2024-01-07T20:31:32,863 creating build/lib/mitos/update 2024-01-07T20:31:32,864 copying mitos/update/__init__.py -> build/lib/mitos/update 2024-01-07T20:31:32,866 creating build/lib/mitos/mitofile 2024-01-07T20:31:32,867 copying mitos/mitofile/__init__.py -> build/lib/mitos/mitofile 2024-01-07T20:31:32,869 creating build/lib/mitos/blast 2024-01-07T20:31:32,870 copying mitos/blast/__init__.py -> build/lib/mitos/blast 2024-01-07T20:31:32,873 creating build/lib/mitos/bedfile 2024-01-07T20:31:32,874 copying mitos/bedfile/__init__.py -> build/lib/mitos/bedfile 2024-01-07T20:31:32,876 creating build/lib/mitos/extprog 2024-01-07T20:31:32,877 copying mitos/extprog/__init__.py -> build/lib/mitos/extprog 2024-01-07T20:31:32,879 creating build/lib/mitos/feature 2024-01-07T20:31:32,880 copying mitos/feature/__init__.py -> build/lib/mitos/feature 2024-01-07T20:31:32,883 creating build/lib/mitos/sequence 2024-01-07T20:31:32,884 copying mitos/sequence/degenerate.py -> build/lib/mitos/sequence 2024-01-07T20:31:32,886 copying mitos/sequence/__init__.py -> build/lib/mitos/sequence 2024-01-07T20:31:32,888 creating build/lib/mitos/mito 2024-01-07T20:31:32,889 copying mitos/mito/__init__.py -> build/lib/mitos/mito 2024-01-07T20:31:32,891 creating build/lib/mitos/gfffile 2024-01-07T20:31:32,892 copying mitos/gfffile/__init__.py -> build/lib/mitos/gfffile 2024-01-07T20:31:32,894 creating build/lib/mitos/tax 2024-01-07T20:31:32,895 copying mitos/tax/__init__.py -> build/lib/mitos/tax 2024-01-07T20:31:32,897 creating build/lib/mitos/tbl 2024-01-07T20:31:32,898 copying mitos/tbl/__init__.py -> build/lib/mitos/tbl 2024-01-07T20:31:32,900 running egg_info 2024-01-07T20:31:32,954 writing mitos.egg-info/PKG-INFO 2024-01-07T20:31:32,957 writing dependency_links to mitos.egg-info/dependency_links.txt 2024-01-07T20:31:32,958 writing requirements to mitos.egg-info/requires.txt 2024-01-07T20:31:32,959 writing top-level names to mitos.egg-info/top_level.txt 2024-01-07T20:31:32,999 reading manifest file 'mitos.egg-info/SOURCES.txt' 2024-01-07T20:31:33,002 reading manifest template 'MANIFEST.in' 2024-01-07T20:31:33,004 adding license file 'LICENSE' 2024-01-07T20:31:33,008 writing manifest file 'mitos.egg-info/SOURCES.txt' 2024-01-07T20:31:33,011 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'mitos.codons' is absent from the `packages` configuration. 2024-01-07T20:31:33,011 !! 2024-01-07T20:31:33,013 ******************************************************************************** 2024-01-07T20:31:33,013 ############################ 2024-01-07T20:31:33,014 # Package would be ignored # 2024-01-07T20:31:33,014 ############################ 2024-01-07T20:31:33,015 Python recognizes 'mitos.codons' as an importable package[^1], 2024-01-07T20:31:33,015 but it is absent from setuptools' `packages` configuration. 2024-01-07T20:31:33,016 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-07T20:31:33,017 package, please make sure that 'mitos.codons' is explicitly added 2024-01-07T20:31:33,017 to the `packages` configuration field. 2024-01-07T20:31:33,018 Alternatively, you can also rely on setuptools' discovery methods 2024-01-07T20:31:33,019 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-07T20:31:33,020 instead of `find_packages(...)`/`find:`). 2024-01-07T20:31:33,021 You can read more about "package discovery" on setuptools documentation page: 2024-01-07T20:31:33,022 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-07T20:31:33,023 If you don't want 'mitos.codons' to be distributed and are 2024-01-07T20:31:33,024 already explicitly excluding 'mitos.codons' via 2024-01-07T20:31:33,024 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-07T20:31:33,025 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-07T20:31:33,025 combination with a more fine grained `package-data` configuration. 2024-01-07T20:31:33,026 You can read more about "package data files" on setuptools documentation page: 2024-01-07T20:31:33,027 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-07T20:31:33,028 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-07T20:31:33,028 even if it does not contain any `.py` files. 2024-01-07T20:31:33,029 On the other hand, currently there is no concept of package data 2024-01-07T20:31:33,029 directory, all directories are treated like packages. 2024-01-07T20:31:33,029 ******************************************************************************** 2024-01-07T20:31:33,030 !! 2024-01-07T20:31:33,031 check.warn(importable) 2024-01-07T20:31:33,031 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'mitos.mitfi.parser' is absent from the `packages` configuration. 2024-01-07T20:31:33,032 !! 2024-01-07T20:31:33,033 ******************************************************************************** 2024-01-07T20:31:33,033 ############################ 2024-01-07T20:31:33,033 # Package would be ignored # 2024-01-07T20:31:33,034 ############################ 2024-01-07T20:31:33,035 Python recognizes 'mitos.mitfi.parser' as an importable package[^1], 2024-01-07T20:31:33,035 but it is absent from setuptools' `packages` configuration. 2024-01-07T20:31:33,036 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-07T20:31:33,036 package, please make sure that 'mitos.mitfi.parser' is explicitly added 2024-01-07T20:31:33,037 to the `packages` configuration field. 2024-01-07T20:31:33,038 Alternatively, you can also rely on setuptools' discovery methods 2024-01-07T20:31:33,038 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-07T20:31:33,039 instead of `find_packages(...)`/`find:`). 2024-01-07T20:31:33,040 You can read more about "package discovery" on setuptools documentation page: 2024-01-07T20:31:33,041 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-07T20:31:33,042 If you don't want 'mitos.mitfi.parser' to be distributed and are 2024-01-07T20:31:33,043 already explicitly excluding 'mitos.mitfi.parser' via 2024-01-07T20:31:33,043 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-07T20:31:33,043 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-07T20:31:33,044 combination with a more fine grained `package-data` configuration. 2024-01-07T20:31:33,045 You can read more about "package data files" on setuptools documentation page: 2024-01-07T20:31:33,046 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-07T20:31:33,048 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-07T20:31:33,048 even if it does not contain any `.py` files. 2024-01-07T20:31:33,049 On the other hand, currently there is no concept of package data 2024-01-07T20:31:33,049 directory, all directories are treated like packages. 2024-01-07T20:31:33,050 ******************************************************************************** 2024-01-07T20:31:33,051 !! 2024-01-07T20:31:33,051 check.warn(importable) 2024-01-07T20:31:33,052 copying mitos/plotprot.R -> build/lib/mitos 2024-01-07T20:31:33,053 copying mitos/plotrna.R -> build/lib/mitos 2024-01-07T20:31:33,053 creating build/lib/mitos/codons 2024-01-07T20:31:33,053 copying mitos/codons/gc.prt -> build/lib/mitos/codons 2024-01-07T20:31:33,054 creating build/lib/mitos/mitfi/parser 2024-01-07T20:31:33,054 copying mitos/mitfi/parser/improve_infernal_structure.jar -> build/lib/mitos/mitfi/parser 2024-01-07T20:31:33,054 copying mitos/mitfi/parser/mitfiGeneticCodes -> build/lib/mitos/mitfi/parser 2024-01-07T20:31:33,055 copying mitos/mitfi/parser/mitfi_import-1.1.jar -> build/lib/mitos/mitfi/parser 2024-01-07T20:31:33,055 copying mitos/mitfi/parser/mitfi_import.jar -> build/lib/mitos/mitfi/parser 2024-01-07T20:31:33,056 copying mitos/webserver/DB_index.txt -> build/lib/mitos/webserver 2024-01-07T20:31:33,058 copying mitos/webserver/DB_search.txt -> build/lib/mitos/webserver 2024-01-07T20:31:33,059 copying mitos/webserver/help.txt -> build/lib/mitos/webserver 2024-01-07T20:31:33,060 copying mitos/webserver/history.txt -> build/lib/mitos/webserver 2024-01-07T20:31:33,062 copying mitos/webserver/index.txt -> build/lib/mitos/webserver 2024-01-07T20:31:33,064 copying mitos/webserver/news.txt -> build/lib/mitos/webserver 2024-01-07T20:31:33,066 copying mitos/webserver/upload.txt -> build/lib/mitos/webserver 2024-01-07T20:31:33,068 copying mitos/webserver/wait.txt -> build/lib/mitos/webserver 2024-01-07T20:31:33,076 running build_scripts 2024-01-07T20:31:33,077 creating build/scripts-3.11 2024-01-07T20:31:33,078 copying and adjusting runmitos.py -> build/scripts-3.11 2024-01-07T20:31:33,080 copying and adjusting drawmitos.py -> build/scripts-3.11 2024-01-07T20:31:33,082 copying analyse.py -> build/scripts-3.11 2024-01-07T20:31:33,085 copying gcpp.py -> build/scripts-3.11 2024-01-07T20:31:33,087 copying and adjusting geneorder.py -> build/scripts-3.11 2024-01-07T20:31:33,089 copying and adjusting getfeatures.py -> build/scripts-3.11 2024-01-07T20:31:33,091 copying and adjusting getinfo.py -> build/scripts-3.11 2024-01-07T20:31:33,093 copying and adjusting refseqsplit.py -> build/scripts-3.11 2024-01-07T20:31:33,094 copying and adjusting subseq.py -> build/scripts-3.11 2024-01-07T20:31:33,096 copying and adjusting taxtree.py -> build/scripts-3.11 2024-01-07T20:31:33,098 copying mitos/plotprot.R -> build/scripts-3.11 2024-01-07T20:31:33,100 copying mitos/plotrna.R -> build/scripts-3.11 2024-01-07T20:31:33,102 changing mode of build/scripts-3.11/runmitos.py from 644 to 755 2024-01-07T20:31:33,102 changing mode of build/scripts-3.11/drawmitos.py from 644 to 755 2024-01-07T20:31:33,103 changing mode of build/scripts-3.11/analyse.py from 644 to 755 2024-01-07T20:31:33,104 changing mode of build/scripts-3.11/gcpp.py from 644 to 755 2024-01-07T20:31:33,104 changing mode of build/scripts-3.11/geneorder.py from 644 to 755 2024-01-07T20:31:33,105 changing mode of build/scripts-3.11/getfeatures.py from 644 to 755 2024-01-07T20:31:33,105 changing mode of build/scripts-3.11/getinfo.py from 644 to 755 2024-01-07T20:31:33,106 changing mode of build/scripts-3.11/refseqsplit.py from 644 to 755 2024-01-07T20:31:33,106 changing mode of build/scripts-3.11/subseq.py from 644 to 755 2024-01-07T20:31:33,107 changing mode of build/scripts-3.11/taxtree.py from 644 to 755 2024-01-07T20:31:33,129 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-01-07T20:31:33,130 !! 2024-01-07T20:31:33,131 ******************************************************************************** 2024-01-07T20:31:33,132 Please avoid running ``setup.py`` directly. 2024-01-07T20:31:33,132 Instead, use pypa/build, pypa/installer or other 2024-01-07T20:31:33,133 standards-based tools. 2024-01-07T20:31:33,134 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-01-07T20:31:33,135 ******************************************************************************** 2024-01-07T20:31:33,138 !! 2024-01-07T20:31:33,138 self.initialize_options() 2024-01-07T20:31:33,160 installing to build/bdist.linux-armv7l/wheel 2024-01-07T20:31:33,161 running install 2024-01-07T20:31:33,184 running install_lib 2024-01-07T20:31:33,208 creating build/bdist.linux-armv7l 2024-01-07T20:31:33,209 creating build/bdist.linux-armv7l/wheel 2024-01-07T20:31:33,211 creating build/bdist.linux-armv7l/wheel/mitos 2024-01-07T20:31:33,212 creating build/bdist.linux-armv7l/wheel/mitos/trna 2024-01-07T20:31:33,213 copying build/lib/mitos/trna/trnascan.py -> build/bdist.linux-armv7l/wheel/mitos/trna 2024-01-07T20:31:33,215 copying build/lib/mitos/trna/arwenscan.py -> build/bdist.linux-armv7l/wheel/mitos/trna 2024-01-07T20:31:33,217 copying build/lib/mitos/trna/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/trna 2024-01-07T20:31:33,219 copying build/lib/mitos/mitos-extension.py -> build/bdist.linux-armv7l/wheel/mitos 2024-01-07T20:31:33,222 copying build/lib/mitos/convert_tree.py -> build/bdist.linux-armv7l/wheel/mitos 2024-01-07T20:31:33,225 creating build/bdist.linux-armv7l/wheel/mitos/draw 2024-01-07T20:31:33,226 copying build/lib/mitos/draw/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/draw 2024-01-07T20:31:33,229 creating build/bdist.linux-armv7l/wheel/mitos/gb 2024-01-07T20:31:33,230 copying build/lib/mitos/gb/unify.py -> build/bdist.linux-armv7l/wheel/mitos/gb 2024-01-07T20:31:33,232 copying build/lib/mitos/gb/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/gb 2024-01-07T20:31:33,235 creating build/bdist.linux-armv7l/wheel/mitos/codon 2024-01-07T20:31:33,236 copying build/lib/mitos/codon/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/codon 2024-01-07T20:31:33,238 creating build/bdist.linux-armv7l/wheel/mitos/mitfi 2024-01-07T20:31:33,240 creating build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2024-01-07T20:31:33,241 copying build/lib/mitos/mitfi/parser/mitfiGeneticCodes -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2024-01-07T20:31:33,243 copying build/lib/mitos/mitfi/parser/mitfi_import-1.1.jar -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2024-01-07T20:31:33,246 copying build/lib/mitos/mitfi/parser/mitfi_import.jar -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2024-01-07T20:31:33,248 copying build/lib/mitos/mitfi/parser/improve_infernal_structure.jar -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2024-01-07T20:31:33,250 copying build/lib/mitos/mitfi/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mitfi 2024-01-07T20:31:33,253 copying build/lib/mitos/trna-cm.py -> build/bdist.linux-armv7l/wheel/mitos 2024-01-07T20:31:33,258 copying build/lib/mitos/mitoloc.py -> build/bdist.linux-armv7l/wheel/mitos 2024-01-07T20:31:33,261 creating build/bdist.linux-armv7l/wheel/mitos/mergefeature 2024-01-07T20:31:33,262 copying build/lib/mitos/mergefeature/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mergefeature 2024-01-07T20:31:33,265 creating build/bdist.linux-armv7l/wheel/mitos/webserver 2024-01-07T20:31:33,266 copying build/lib/mitos/webserver/index.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2024-01-07T20:31:33,268 copying build/lib/mitos/webserver/history.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2024-01-07T20:31:33,270 copying build/lib/mitos/webserver/help.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2024-01-07T20:31:33,275 copying build/lib/mitos/webserver/DB_index.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2024-01-07T20:31:33,277 copying build/lib/mitos/webserver/DB_search.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2024-01-07T20:31:33,279 copying build/lib/mitos/webserver/upload.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2024-01-07T20:31:33,281 copying build/lib/mitos/webserver/wait.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2024-01-07T20:31:33,282 copying build/lib/mitos/webserver/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/webserver 2024-01-07T20:31:33,284 copying build/lib/mitos/webserver/news.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2024-01-07T20:31:33,286 copying build/lib/mitos/plotrna.R -> build/bdist.linux-armv7l/wheel/mitos 2024-01-07T20:31:33,288 creating build/bdist.linux-armv7l/wheel/mitos/rna 2024-01-07T20:31:33,289 copying build/lib/mitos/rna/forester.py -> build/bdist.linux-armv7l/wheel/mitos/rna 2024-01-07T20:31:33,291 copying build/lib/mitos/rna/vienna.py -> build/bdist.linux-armv7l/wheel/mitos/rna 2024-01-07T20:31:33,293 copying build/lib/mitos/rna/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/rna 2024-01-07T20:31:33,295 creating build/bdist.linux-armv7l/wheel/mitos/util 2024-01-07T20:31:33,295 copying build/lib/mitos/util/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/util 2024-01-07T20:31:33,297 copying build/lib/mitos/prepareFiles.py -> build/bdist.linux-armv7l/wheel/mitos 2024-01-07T20:31:33,299 creating build/bdist.linux-armv7l/wheel/mitos/update 2024-01-07T20:31:33,300 copying build/lib/mitos/update/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/update 2024-01-07T20:31:33,302 copying build/lib/mitos/removegene.py -> build/bdist.linux-armv7l/wheel/mitos 2024-01-07T20:31:33,304 creating build/bdist.linux-armv7l/wheel/mitos/mitofile 2024-01-07T20:31:33,305 copying build/lib/mitos/mitofile/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mitofile 2024-01-07T20:31:33,308 creating build/bdist.linux-armv7l/wheel/mitos/blast 2024-01-07T20:31:33,309 copying build/lib/mitos/blast/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/blast 2024-01-07T20:31:33,312 creating build/bdist.linux-armv7l/wheel/mitos/codons 2024-01-07T20:31:33,313 copying build/lib/mitos/codons/gc.prt -> build/bdist.linux-armv7l/wheel/mitos/codons 2024-01-07T20:31:33,317 creating build/bdist.linux-armv7l/wheel/mitos/bedfile 2024-01-07T20:31:33,317 copying build/lib/mitos/bedfile/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/bedfile 2024-01-07T20:31:33,320 copying build/lib/mitos/mitoch_revisions.py -> build/bdist.linux-armv7l/wheel/mitos 2024-01-07T20:31:33,323 copying build/lib/mitos/create_prot_fasta.py -> build/bdist.linux-armv7l/wheel/mitos 2024-01-07T20:31:33,325 copying build/lib/mitos/update-mitolog.py -> build/bdist.linux-armv7l/wheel/mitos 2024-01-07T20:31:33,328 copying build/lib/mitos/trnadist.py -> build/bdist.linux-armv7l/wheel/mitos 2024-01-07T20:31:33,330 copying build/lib/mitos/update-blastdb.py -> build/bdist.linux-armv7l/wheel/mitos 2024-01-07T20:31:33,332 copying build/lib/mitos/booreparser.py -> build/bdist.linux-armv7l/wheel/mitos 2024-01-07T20:31:33,334 copying build/lib/mitos/ogre-geneorder.py -> build/bdist.linux-armv7l/wheel/mitos 2024-01-07T20:31:33,336 copying build/lib/mitos/plotprot.R -> build/bdist.linux-armv7l/wheel/mitos 2024-01-07T20:31:33,338 creating build/bdist.linux-armv7l/wheel/mitos/extprog 2024-01-07T20:31:33,339 copying build/lib/mitos/extprog/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/extprog 2024-01-07T20:31:33,341 copying build/lib/mitos/skew.py -> build/bdist.linux-armv7l/wheel/mitos 2024-01-07T20:31:33,344 creating build/bdist.linux-armv7l/wheel/mitos/feature 2024-01-07T20:31:33,345 copying build/lib/mitos/feature/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/feature 2024-01-07T20:31:33,348 copying build/lib/mitos/CONFIG.py -> build/bdist.linux-armv7l/wheel/mitos 2024-01-07T20:31:33,350 copying build/lib/mitos/inihit.py -> build/bdist.linux-armv7l/wheel/mitos 2024-01-07T20:31:33,353 creating build/bdist.linux-armv7l/wheel/mitos/sequence 2024-01-07T20:31:33,354 copying build/lib/mitos/sequence/degenerate.py -> build/bdist.linux-armv7l/wheel/mitos/sequence 2024-01-07T20:31:33,355 copying build/lib/mitos/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/sequence 2024-01-07T20:31:33,358 creating build/bdist.linux-armv7l/wheel/mitos/mito 2024-01-07T20:31:33,359 copying build/lib/mitos/mito/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mito 2024-01-07T20:31:33,361 copying build/lib/mitos/mitos-extension2.py -> build/bdist.linux-armv7l/wheel/mitos 2024-01-07T20:31:33,364 creating build/bdist.linux-armv7l/wheel/mitos/gfffile 2024-01-07T20:31:33,365 copying build/lib/mitos/gfffile/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/gfffile 2024-01-07T20:31:33,367 creating build/bdist.linux-armv7l/wheel/mitos/tax 2024-01-07T20:31:33,368 copying build/lib/mitos/tax/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/tax 2024-01-07T20:31:33,370 copying build/lib/mitos/__init__.py -> build/bdist.linux-armv7l/wheel/mitos 2024-01-07T20:31:33,372 creating build/bdist.linux-armv7l/wheel/mitos/tbl 2024-01-07T20:31:33,373 copying build/lib/mitos/tbl/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/tbl 2024-01-07T20:31:33,375 running install_egg_info 2024-01-07T20:31:33,404 Copying mitos.egg-info to build/bdist.linux-armv7l/wheel/mitos-1.1.4-py3.11.egg-info 2024-01-07T20:31:33,413 running install_scripts 2024-01-07T20:31:33,414 creating build/bdist.linux-armv7l/wheel/mitos-1.1.4.data 2024-01-07T20:31:33,415 creating build/bdist.linux-armv7l/wheel/mitos-1.1.4.data/scripts 2024-01-07T20:31:33,416 copying build/scripts-3.11/gcpp.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.4.data/scripts 2024-01-07T20:31:33,418 copying build/scripts-3.11/getfeatures.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.4.data/scripts 2024-01-07T20:31:33,420 copying build/scripts-3.11/geneorder.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.4.data/scripts 2024-01-07T20:31:33,422 copying build/scripts-3.11/plotrna.R -> build/bdist.linux-armv7l/wheel/mitos-1.1.4.data/scripts 2024-01-07T20:31:33,424 copying build/scripts-3.11/analyse.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.4.data/scripts 2024-01-07T20:31:33,426 copying build/scripts-3.11/taxtree.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.4.data/scripts 2024-01-07T20:31:33,428 copying build/scripts-3.11/getinfo.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.4.data/scripts 2024-01-07T20:31:33,430 copying build/scripts-3.11/subseq.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.4.data/scripts 2024-01-07T20:31:33,432 copying build/scripts-3.11/plotprot.R -> build/bdist.linux-armv7l/wheel/mitos-1.1.4.data/scripts 2024-01-07T20:31:33,434 copying build/scripts-3.11/refseqsplit.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.4.data/scripts 2024-01-07T20:31:33,436 copying build/scripts-3.11/runmitos.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.4.data/scripts 2024-01-07T20:31:33,438 copying build/scripts-3.11/drawmitos.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.4.data/scripts 2024-01-07T20:31:33,440 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.4.data/scripts/gcpp.py to 755 2024-01-07T20:31:33,440 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.4.data/scripts/getfeatures.py to 755 2024-01-07T20:31:33,441 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.4.data/scripts/geneorder.py to 755 2024-01-07T20:31:33,441 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.4.data/scripts/plotrna.R to 755 2024-01-07T20:31:33,442 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.4.data/scripts/analyse.py to 755 2024-01-07T20:31:33,442 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.4.data/scripts/taxtree.py to 755 2024-01-07T20:31:33,443 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.4.data/scripts/getinfo.py to 755 2024-01-07T20:31:33,443 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.4.data/scripts/subseq.py to 755 2024-01-07T20:31:33,444 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.4.data/scripts/plotprot.R to 755 2024-01-07T20:31:33,444 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.4.data/scripts/refseqsplit.py to 755 2024-01-07T20:31:33,445 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.4.data/scripts/runmitos.py to 755 2024-01-07T20:31:33,446 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.4.data/scripts/drawmitos.py to 755 2024-01-07T20:31:33,457 creating build/bdist.linux-armv7l/wheel/mitos-1.1.4.dist-info/WHEEL 2024-01-07T20:31:33,460 creating '/tmp/pip-wheel-sikwjzl0/mitos-1.1.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-01-07T20:31:33,463 adding 'mitos/CONFIG.py' 2024-01-07T20:31:33,464 adding 'mitos/__init__.py' 2024-01-07T20:31:33,466 adding 'mitos/booreparser.py' 2024-01-07T20:31:33,469 adding 'mitos/convert_tree.py' 2024-01-07T20:31:33,472 adding 'mitos/create_prot_fasta.py' 2024-01-07T20:31:33,474 adding 'mitos/inihit.py' 2024-01-07T20:31:33,478 adding 'mitos/mitoch_revisions.py' 2024-01-07T20:31:33,480 adding 'mitos/mitoloc.py' 2024-01-07T20:31:33,483 adding 'mitos/mitos-extension.py' 2024-01-07T20:31:33,485 adding 'mitos/mitos-extension2.py' 2024-01-07T20:31:33,486 adding 'mitos/ogre-geneorder.py' 2024-01-07T20:31:33,487 adding 'mitos/plotprot.R' 2024-01-07T20:31:33,489 adding 'mitos/plotrna.R' 2024-01-07T20:31:33,490 adding 'mitos/prepareFiles.py' 2024-01-07T20:31:33,491 adding 'mitos/removegene.py' 2024-01-07T20:31:33,493 adding 'mitos/skew.py' 2024-01-07T20:31:33,508 adding 'mitos/trna-cm.py' 2024-01-07T20:31:33,512 adding 'mitos/trnadist.py' 2024-01-07T20:31:33,513 adding 'mitos/update-blastdb.py' 2024-01-07T20:31:33,514 adding 'mitos/update-mitolog.py' 2024-01-07T20:31:33,516 adding 'mitos/bedfile/__init__.py' 2024-01-07T20:31:33,521 adding 'mitos/blast/__init__.py' 2024-01-07T20:31:33,523 adding 'mitos/codon/__init__.py' 2024-01-07T20:31:33,525 adding 'mitos/codons/gc.prt' 2024-01-07T20:31:33,527 adding 'mitos/draw/__init__.py' 2024-01-07T20:31:33,529 adding 'mitos/extprog/__init__.py' 2024-01-07T20:31:33,533 adding 'mitos/feature/__init__.py' 2024-01-07T20:31:33,537 adding 'mitos/gb/__init__.py' 2024-01-07T20:31:33,539 adding 'mitos/gb/unify.py' 2024-01-07T20:31:33,541 adding 'mitos/gfffile/__init__.py' 2024-01-07T20:31:33,544 adding 'mitos/mergefeature/__init__.py' 2024-01-07T20:31:33,546 adding 'mitos/mitfi/__init__.py' 2024-01-07T20:31:33,548 adding 'mitos/mitfi/parser/improve_infernal_structure.jar' 2024-01-07T20:31:33,550 adding 'mitos/mitfi/parser/mitfiGeneticCodes' 2024-01-07T20:31:33,554 adding 'mitos/mitfi/parser/mitfi_import-1.1.jar' 2024-01-07T20:31:33,557 adding 'mitos/mitfi/parser/mitfi_import.jar' 2024-01-07T20:31:33,559 adding 'mitos/mito/__init__.py' 2024-01-07T20:31:33,561 adding 'mitos/mitofile/__init__.py' 2024-01-07T20:31:33,562 adding 'mitos/rna/__init__.py' 2024-01-07T20:31:33,564 adding 'mitos/rna/forester.py' 2024-01-07T20:31:33,565 adding 'mitos/rna/vienna.py' 2024-01-07T20:31:33,568 adding 'mitos/sequence/__init__.py' 2024-01-07T20:31:33,569 adding 'mitos/sequence/degenerate.py' 2024-01-07T20:31:33,571 adding 'mitos/tax/__init__.py' 2024-01-07T20:31:33,573 adding 'mitos/tbl/__init__.py' 2024-01-07T20:31:33,575 adding 'mitos/trna/__init__.py' 2024-01-07T20:31:33,577 adding 'mitos/trna/arwenscan.py' 2024-01-07T20:31:33,579 adding 'mitos/trna/trnascan.py' 2024-01-07T20:31:33,581 adding 'mitos/update/__init__.py' 2024-01-07T20:31:33,583 adding 'mitos/util/__init__.py' 2024-01-07T20:31:33,585 adding 'mitos/webserver/DB_index.txt' 2024-01-07T20:31:33,586 adding 'mitos/webserver/DB_search.txt' 2024-01-07T20:31:33,588 adding 'mitos/webserver/__init__.py' 2024-01-07T20:31:33,611 adding 'mitos/webserver/help.txt' 2024-01-07T20:31:33,613 adding 'mitos/webserver/history.txt' 2024-01-07T20:31:33,615 adding 'mitos/webserver/index.txt' 2024-01-07T20:31:33,616 adding 'mitos/webserver/news.txt' 2024-01-07T20:31:33,617 adding 'mitos/webserver/upload.txt' 2024-01-07T20:31:33,618 adding 'mitos/webserver/wait.txt' 2024-01-07T20:31:33,622 adding 'mitos-1.1.4.data/scripts/analyse.py' 2024-01-07T20:31:33,623 adding 'mitos-1.1.4.data/scripts/drawmitos.py' 2024-01-07T20:31:33,625 adding 'mitos-1.1.4.data/scripts/gcpp.py' 2024-01-07T20:31:33,627 adding 'mitos-1.1.4.data/scripts/geneorder.py' 2024-01-07T20:31:33,628 adding 'mitos-1.1.4.data/scripts/getfeatures.py' 2024-01-07T20:31:33,630 adding 'mitos-1.1.4.data/scripts/getinfo.py' 2024-01-07T20:31:33,631 adding 'mitos-1.1.4.data/scripts/plotprot.R' 2024-01-07T20:31:33,633 adding 'mitos-1.1.4.data/scripts/plotrna.R' 2024-01-07T20:31:33,634 adding 'mitos-1.1.4.data/scripts/refseqsplit.py' 2024-01-07T20:31:33,636 adding 'mitos-1.1.4.data/scripts/runmitos.py' 2024-01-07T20:31:33,638 adding 'mitos-1.1.4.data/scripts/subseq.py' 2024-01-07T20:31:33,639 adding 'mitos-1.1.4.data/scripts/taxtree.py' 2024-01-07T20:31:33,641 adding 'mitos-1.1.4.dist-info/LICENSE' 2024-01-07T20:31:33,642 adding 'mitos-1.1.4.dist-info/METADATA' 2024-01-07T20:31:33,643 adding 'mitos-1.1.4.dist-info/WHEEL' 2024-01-07T20:31:33,644 adding 'mitos-1.1.4.dist-info/top_level.txt' 2024-01-07T20:31:33,645 adding 'mitos-1.1.4.dist-info/RECORD' 2024-01-07T20:31:33,650 removing build/bdist.linux-armv7l/wheel 2024-01-07T20:31:33,784 Building wheel for mitos (setup.py): finished with status 'done' 2024-01-07T20:31:33,789 Created wheel for mitos: filename=mitos-1.1.4-py3-none-any.whl size=275535 sha256=94e72cf1eb3cbbe067f3996d78d50a7fe9e91350bbd146f7babf90321ecb9ffc 2024-01-07T20:31:33,791 Stored in directory: /tmp/pip-ephem-wheel-cache-rtteczf2/wheels/27/64/72/e3789449715a869d2299494fb583ae27375beb87d260336e13 2024-01-07T20:31:33,802 Successfully built mitos 2024-01-07T20:31:33,815 Removed build tracker: '/tmp/pip-build-tracker-v875yh81'