2024-01-08T13:46:12,204 Created temporary directory: /tmp/pip-build-tracker-b2pj_5ek
2024-01-08T13:46:12,205 Initialized build tracking at /tmp/pip-build-tracker-b2pj_5ek
2024-01-08T13:46:12,206 Created build tracker: /tmp/pip-build-tracker-b2pj_5ek
2024-01-08T13:46:12,206 Entered build tracker: /tmp/pip-build-tracker-b2pj_5ek
2024-01-08T13:46:12,207 Created temporary directory: /tmp/pip-wheel-en36wyv2
2024-01-08T13:46:12,210 Created temporary directory: /tmp/pip-ephem-wheel-cache-qrj9rgjg
2024-01-08T13:46:12,232 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-01-08T13:46:12,236 2 location(s) to search for versions of emzed-ext-mzmine2:
2024-01-08T13:46:12,236 * https://pypi.org/simple/emzed-ext-mzmine2/
2024-01-08T13:46:12,236 * https://www.piwheels.org/simple/emzed-ext-mzmine2/
2024-01-08T13:46:12,236 Fetching project page and analyzing links: https://pypi.org/simple/emzed-ext-mzmine2/
2024-01-08T13:46:12,237 Getting page https://pypi.org/simple/emzed-ext-mzmine2/
2024-01-08T13:46:12,238 Found index url https://pypi.org/simple/
2024-01-08T13:46:12,454 Fetched page https://pypi.org/simple/emzed-ext-mzmine2/ as application/vnd.pypi.simple.v1+json
2024-01-08T13:46:12,456   Skipping link: No binaries permitted for emzed-ext-mzmine2: https://files.pythonhosted.org/packages/35/d2/d47518677342c16859c1d0afdff3b3024d28a5eb216055b6ce344d4d7878/emzed_ext_mzmine2-3.0.0a1-py3-none-any.whl (from https://pypi.org/simple/emzed-ext-mzmine2/)
2024-01-08T13:46:12,457   Found link https://files.pythonhosted.org/packages/5a/32/4271538c74bb4732a57e737305872ab3273069eac6787a1933a2452c8e68/emzed_ext_mzmine2-3.0.0a1.tar.gz (from https://pypi.org/simple/emzed-ext-mzmine2/), version: 3.0.0a1
2024-01-08T13:46:12,457   Found link https://files.pythonhosted.org/packages/88/eb/119a5b0ede516a644d74bc85c0945cab6ca7f3b951557ccb83dd84e692f7/emzed_ext_mzmine2-3.0.0a2.tar.gz (from https://pypi.org/simple/emzed-ext-mzmine2/), version: 3.0.0a2
2024-01-08T13:46:12,458 Fetching project page and analyzing links: https://www.piwheels.org/simple/emzed-ext-mzmine2/
2024-01-08T13:46:12,459 Getting page https://www.piwheels.org/simple/emzed-ext-mzmine2/
2024-01-08T13:46:12,460 Found index url https://www.piwheels.org/simple/
2024-01-08T13:46:12,639 Fetched page https://www.piwheels.org/simple/emzed-ext-mzmine2/ as text/html
2024-01-08T13:46:12,641   Skipping link: No binaries permitted for emzed-ext-mzmine2: https://www.piwheels.org/simple/emzed-ext-mzmine2/emzed_ext_mzmine2-3.0.0a1-py3-none-any.whl#sha256=2a12b9d9c8275437816f419166e61f2b492f20a8b57b7f18fe16b3ed6f482c4b (from https://www.piwheels.org/simple/emzed-ext-mzmine2/)
2024-01-08T13:46:12,641 Skipping link: not a file: https://www.piwheels.org/simple/emzed-ext-mzmine2/
2024-01-08T13:46:12,642 Skipping link: not a file: https://pypi.org/simple/emzed-ext-mzmine2/
2024-01-08T13:46:12,661 Given no hashes to check 1 links for project 'emzed-ext-mzmine2': discarding no candidates
2024-01-08T13:46:12,678 Collecting emzed-ext-mzmine2==3.0.0a2
2024-01-08T13:46:12,681   Created temporary directory: /tmp/pip-unpack-gdb8ssh_
2024-01-08T13:46:12,893   Downloading emzed_ext_mzmine2-3.0.0a2.tar.gz (108 kB)
2024-01-08T13:46:13,042   Added emzed-ext-mzmine2==3.0.0a2 from https://files.pythonhosted.org/packages/88/eb/119a5b0ede516a644d74bc85c0945cab6ca7f3b951557ccb83dd84e692f7/emzed_ext_mzmine2-3.0.0a2.tar.gz to build tracker '/tmp/pip-build-tracker-b2pj_5ek'
2024-01-08T13:46:13,046   Created temporary directory: /tmp/pip-build-env-qyp9_2se
2024-01-08T13:46:13,050   Installing build dependencies: started
2024-01-08T13:46:13,051   Running command pip subprocess to install build dependencies
2024-01-08T13:46:14,192   Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2024-01-08T13:46:14,690   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-01-08T13:46:16,117   Collecting setuptools
2024-01-08T13:46:16,130     Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.0.3-py3-none-any.whl (819 kB)
2024-01-08T13:46:16,349   Collecting wheel
2024-01-08T13:46:16,362     Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB)
2024-01-08T13:46:19,897   Installing collected packages: wheel, setuptools
2024-01-08T13:46:20,206     Creating /tmp/pip-build-env-qyp9_2se/overlay/local/bin
2024-01-08T13:46:20,209     changing mode of /tmp/pip-build-env-qyp9_2se/overlay/local/bin/wheel to 755
2024-01-08T13:46:22,765   Successfully installed setuptools-69.0.3 wheel-0.42.0

2024-01-08T13:46:23,018   [notice] A new release of pip is available: 23.3.1 -> 23.3.2
2024-01-08T13:46:23,018   [notice] To update, run: python3 -m pip install --upgrade pip
2024-01-08T13:46:23,289   Installing build dependencies: finished with status 'done'
2024-01-08T13:46:23,301   Getting requirements to build wheel: started
2024-01-08T13:46:23,302   Running command Getting requirements to build wheel
2024-01-08T13:46:23,827   running egg_info
2024-01-08T13:46:23,831   writing src/emzed_ext_mzmine2.egg-info/PKG-INFO
2024-01-08T13:46:23,834   writing dependency_links to src/emzed_ext_mzmine2.egg-info/dependency_links.txt
2024-01-08T13:46:23,836   writing requirements to src/emzed_ext_mzmine2.egg-info/requires.txt
2024-01-08T13:46:23,837   writing top-level names to src/emzed_ext_mzmine2.egg-info/top_level.txt
2024-01-08T13:46:23,857   reading manifest file 'src/emzed_ext_mzmine2.egg-info/SOURCES.txt'
2024-01-08T13:46:23,859   reading manifest template 'MANIFEST.in'
2024-01-08T13:46:23,870   writing manifest file 'src/emzed_ext_mzmine2.egg-info/SOURCES.txt'
2024-01-08T13:46:23,947   Getting requirements to build wheel: finished with status 'done'
2024-01-08T13:46:23,957   Created temporary directory: /tmp/pip-modern-metadata-swyt4ctr
2024-01-08T13:46:23,959   Preparing metadata (pyproject.toml): started
2024-01-08T13:46:23,960   Running command Preparing metadata (pyproject.toml)
2024-01-08T13:46:24,436   running dist_info
2024-01-08T13:46:24,454   creating /tmp/pip-modern-metadata-swyt4ctr/emzed_ext_mzmine2.egg-info
2024-01-08T13:46:24,458   writing /tmp/pip-modern-metadata-swyt4ctr/emzed_ext_mzmine2.egg-info/PKG-INFO
2024-01-08T13:46:24,462   writing dependency_links to /tmp/pip-modern-metadata-swyt4ctr/emzed_ext_mzmine2.egg-info/dependency_links.txt
2024-01-08T13:46:24,464   writing requirements to /tmp/pip-modern-metadata-swyt4ctr/emzed_ext_mzmine2.egg-info/requires.txt
2024-01-08T13:46:24,465   writing top-level names to /tmp/pip-modern-metadata-swyt4ctr/emzed_ext_mzmine2.egg-info/top_level.txt
2024-01-08T13:46:24,467   writing manifest file '/tmp/pip-modern-metadata-swyt4ctr/emzed_ext_mzmine2.egg-info/SOURCES.txt'
2024-01-08T13:46:24,484   reading manifest file '/tmp/pip-modern-metadata-swyt4ctr/emzed_ext_mzmine2.egg-info/SOURCES.txt'
2024-01-08T13:46:24,486   reading manifest template 'MANIFEST.in'
2024-01-08T13:46:24,496   writing manifest file '/tmp/pip-modern-metadata-swyt4ctr/emzed_ext_mzmine2.egg-info/SOURCES.txt'
2024-01-08T13:46:24,497   creating '/tmp/pip-modern-metadata-swyt4ctr/emzed_ext_mzmine2-3.0.0a2.dist-info'
2024-01-08T13:46:24,682   Preparing metadata (pyproject.toml): finished with status 'done'
2024-01-08T13:46:24,686   Source in /tmp/pip-wheel-en36wyv2/emzed-ext-mzmine2_8bf048d010d64856b2bb67088d7a6b2e has version 3.0.0a2, which satisfies requirement emzed-ext-mzmine2==3.0.0a2 from https://files.pythonhosted.org/packages/88/eb/119a5b0ede516a644d74bc85c0945cab6ca7f3b951557ccb83dd84e692f7/emzed_ext_mzmine2-3.0.0a2.tar.gz
2024-01-08T13:46:24,687   Removed emzed-ext-mzmine2==3.0.0a2 from https://files.pythonhosted.org/packages/88/eb/119a5b0ede516a644d74bc85c0945cab6ca7f3b951557ccb83dd84e692f7/emzed_ext_mzmine2-3.0.0a2.tar.gz from build tracker '/tmp/pip-build-tracker-b2pj_5ek'
2024-01-08T13:46:24,691 Created temporary directory: /tmp/pip-unpack-we0ya8ij
2024-01-08T13:46:24,692 Created temporary directory: /tmp/pip-unpack-97rb3jxf
2024-01-08T13:46:24,697 Building wheels for collected packages: emzed-ext-mzmine2
2024-01-08T13:46:24,702   Created temporary directory: /tmp/pip-wheel-013vf7q6
2024-01-08T13:46:24,702   Destination directory: /tmp/pip-wheel-013vf7q6
2024-01-08T13:46:24,705   Building wheel for emzed-ext-mzmine2 (pyproject.toml): started
2024-01-08T13:46:24,707   Running command Building wheel for emzed-ext-mzmine2 (pyproject.toml)
2024-01-08T13:46:25,238   running bdist_wheel
2024-01-08T13:46:25,279   running build
2024-01-08T13:46:25,280   running build_py
2024-01-08T13:46:25,287   creating build
2024-01-08T13:46:25,287   creating build/lib
2024-01-08T13:46:25,288   creating build/lib/emzed_ext_mzmine2
2024-01-08T13:46:25,289   copying src/emzed_ext_mzmine2/_utils.py -> build/lib/emzed_ext_mzmine2
2024-01-08T13:46:25,292   copying src/emzed_ext_mzmine2/pick_peaks.py -> build/lib/emzed_ext_mzmine2
2024-01-08T13:46:25,293   copying src/emzed_ext_mzmine2/_installers.py -> build/lib/emzed_ext_mzmine2
2024-01-08T13:46:25,295   copying src/emzed_ext_mzmine2/_java_utils.py -> build/lib/emzed_ext_mzmine2
2024-01-08T13:46:25,297   copying src/emzed_ext_mzmine2/fragment_search.py -> build/lib/emzed_ext_mzmine2
2024-01-08T13:46:25,299   copying src/emzed_ext_mzmine2/_parameters.py -> build/lib/emzed_ext_mzmine2
2024-01-08T13:46:25,301   copying src/emzed_ext_mzmine2/__init__.py -> build/lib/emzed_ext_mzmine2
2024-01-08T13:46:25,303   copying src/emzed_ext_mzmine2/remove_shoulder_peaks.py -> build/lib/emzed_ext_mzmine2
2024-01-08T13:46:25,305   copying src/emzed_ext_mzmine2/adduct_search.py -> build/lib/emzed_ext_mzmine2
2024-01-08T13:46:25,306   copying src/emzed_ext_mzmine2/_peak_resolvers.py -> build/lib/emzed_ext_mzmine2
2024-01-08T13:46:25,308   copying src/emzed_ext_mzmine2/isotope_grouper.py -> build/lib/emzed_ext_mzmine2
2024-01-08T13:46:25,310   copying src/emzed_ext_mzmine2/join_aligner.py -> build/lib/emzed_ext_mzmine2
2024-01-08T13:46:25,312   copying src/emzed_ext_mzmine2/_exceptions.py -> build/lib/emzed_ext_mzmine2
2024-01-08T13:46:25,314   running egg_info
2024-01-08T13:46:25,318   writing src/emzed_ext_mzmine2.egg-info/PKG-INFO
2024-01-08T13:46:25,321   writing dependency_links to src/emzed_ext_mzmine2.egg-info/dependency_links.txt
2024-01-08T13:46:25,322   writing requirements to src/emzed_ext_mzmine2.egg-info/requires.txt
2024-01-08T13:46:25,323   writing top-level names to src/emzed_ext_mzmine2.egg-info/top_level.txt
2024-01-08T13:46:25,330   reading manifest file 'src/emzed_ext_mzmine2.egg-info/SOURCES.txt'
2024-01-08T13:46:25,333   reading manifest template 'MANIFEST.in'
2024-01-08T13:46:25,343   writing manifest file 'src/emzed_ext_mzmine2.egg-info/SOURCES.txt'
2024-01-08T13:46:25,346   /tmp/pip-build-env-qyp9_2se/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'emzed_ext_mzmine2.java' is absent from the `packages` configuration.
2024-01-08T13:46:25,346   !!

2024-01-08T13:46:25,348           ********************************************************************************
2024-01-08T13:46:25,348           ############################
2024-01-08T13:46:25,349           # Package would be ignored #
2024-01-08T13:46:25,349           ############################
2024-01-08T13:46:25,350           Python recognizes 'emzed_ext_mzmine2.java' as an importable package[^1],
2024-01-08T13:46:25,350           but it is absent from setuptools' `packages` configuration.

2024-01-08T13:46:25,352           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-08T13:46:25,352           package, please make sure that 'emzed_ext_mzmine2.java' is explicitly added
2024-01-08T13:46:25,353           to the `packages` configuration field.

2024-01-08T13:46:25,355           Alternatively, you can also rely on setuptools' discovery methods
2024-01-08T13:46:25,357           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-08T13:46:25,358           instead of `find_packages(...)`/`find:`).

2024-01-08T13:46:25,359           You can read more about "package discovery" on setuptools documentation page:

2024-01-08T13:46:25,360           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-08T13:46:25,361           If you don't want 'emzed_ext_mzmine2.java' to be distributed and are
2024-01-08T13:46:25,362           already explicitly excluding 'emzed_ext_mzmine2.java' via
2024-01-08T13:46:25,363           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-08T13:46:25,364           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-08T13:46:25,364           combination with a more fine grained `package-data` configuration.

2024-01-08T13:46:25,365           You can read more about "package data files" on setuptools documentation page:

2024-01-08T13:46:25,366           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-08T13:46:25,367           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-08T13:46:25,368                 even if it does not contain any `.py` files.
2024-01-08T13:46:25,368                 On the other hand, currently there is no concept of package data
2024-01-08T13:46:25,369                 directory, all directories are treated like packages.
2024-01-08T13:46:25,370           ********************************************************************************

2024-01-08T13:46:25,371   !!
2024-01-08T13:46:25,371     check.warn(importable)
2024-01-08T13:46:25,372   copying src/emzed_ext_mzmine2/_mzmine2_default_adducts.json -> build/lib/emzed_ext_mzmine2
2024-01-08T13:46:25,372   copying src/emzed_ext_mzmine2/_mzmine2_parameter_classes.json -> build/lib/emzed_ext_mzmine2
2024-01-08T13:46:25,373   creating build/lib/emzed_ext_mzmine2/java
2024-01-08T13:46:25,373   copying src/emzed_ext_mzmine2/java/extensions.jar -> build/lib/emzed_ext_mzmine2/java
2024-01-08T13:46:25,376   installing to build/bdist.linux-armv7l/wheel
2024-01-08T13:46:25,377   running install
2024-01-08T13:46:25,400   running install_lib
2024-01-08T13:46:25,407   creating build/bdist.linux-armv7l
2024-01-08T13:46:25,407   creating build/bdist.linux-armv7l/wheel
2024-01-08T13:46:25,409   creating build/bdist.linux-armv7l/wheel/emzed_ext_mzmine2
2024-01-08T13:46:25,410   copying build/lib/emzed_ext_mzmine2/_utils.py -> build/bdist.linux-armv7l/wheel/emzed_ext_mzmine2
2024-01-08T13:46:25,412   copying build/lib/emzed_ext_mzmine2/_mzmine2_parameter_classes.json -> build/bdist.linux-armv7l/wheel/emzed_ext_mzmine2
2024-01-08T13:46:25,421   copying build/lib/emzed_ext_mzmine2/pick_peaks.py -> build/bdist.linux-armv7l/wheel/emzed_ext_mzmine2
2024-01-08T13:46:25,422   copying build/lib/emzed_ext_mzmine2/_installers.py -> build/bdist.linux-armv7l/wheel/emzed_ext_mzmine2
2024-01-08T13:46:25,424   copying build/lib/emzed_ext_mzmine2/_java_utils.py -> build/bdist.linux-armv7l/wheel/emzed_ext_mzmine2
2024-01-08T13:46:25,426   copying build/lib/emzed_ext_mzmine2/fragment_search.py -> build/bdist.linux-armv7l/wheel/emzed_ext_mzmine2
2024-01-08T13:46:25,428   copying build/lib/emzed_ext_mzmine2/_parameters.py -> build/bdist.linux-armv7l/wheel/emzed_ext_mzmine2
2024-01-08T13:46:25,430   copying build/lib/emzed_ext_mzmine2/__init__.py -> build/bdist.linux-armv7l/wheel/emzed_ext_mzmine2
2024-01-08T13:46:25,432   copying build/lib/emzed_ext_mzmine2/remove_shoulder_peaks.py -> build/bdist.linux-armv7l/wheel/emzed_ext_mzmine2
2024-01-08T13:46:25,434   copying build/lib/emzed_ext_mzmine2/adduct_search.py -> build/bdist.linux-armv7l/wheel/emzed_ext_mzmine2
2024-01-08T13:46:25,436   copying build/lib/emzed_ext_mzmine2/_peak_resolvers.py -> build/bdist.linux-armv7l/wheel/emzed_ext_mzmine2
2024-01-08T13:46:25,438   copying build/lib/emzed_ext_mzmine2/isotope_grouper.py -> build/bdist.linux-armv7l/wheel/emzed_ext_mzmine2
2024-01-08T13:46:25,440   copying build/lib/emzed_ext_mzmine2/join_aligner.py -> build/bdist.linux-armv7l/wheel/emzed_ext_mzmine2
2024-01-08T13:46:25,442   copying build/lib/emzed_ext_mzmine2/_mzmine2_default_adducts.json -> build/bdist.linux-armv7l/wheel/emzed_ext_mzmine2
2024-01-08T13:46:25,444   copying build/lib/emzed_ext_mzmine2/_exceptions.py -> build/bdist.linux-armv7l/wheel/emzed_ext_mzmine2
2024-01-08T13:46:25,446   creating build/bdist.linux-armv7l/wheel/emzed_ext_mzmine2/java
2024-01-08T13:46:25,447   copying build/lib/emzed_ext_mzmine2/java/extensions.jar -> build/bdist.linux-armv7l/wheel/emzed_ext_mzmine2/java
2024-01-08T13:46:25,451   running install_egg_info
2024-01-08T13:46:25,461   Copying src/emzed_ext_mzmine2.egg-info to build/bdist.linux-armv7l/wheel/emzed_ext_mzmine2-3.0.0a2-py3.11.egg-info
2024-01-08T13:46:25,472   running install_scripts
2024-01-08T13:46:25,483   creating build/bdist.linux-armv7l/wheel/emzed_ext_mzmine2-3.0.0a2.dist-info/WHEEL
2024-01-08T13:46:25,486   creating '/tmp/pip-wheel-013vf7q6/.tmp-zlc6io7t/emzed_ext_mzmine2-3.0.0a2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-01-08T13:46:25,488   adding 'emzed_ext_mzmine2/__init__.py'
2024-01-08T13:46:25,489   adding 'emzed_ext_mzmine2/_exceptions.py'
2024-01-08T13:46:25,491   adding 'emzed_ext_mzmine2/_installers.py'
2024-01-08T13:46:25,492   adding 'emzed_ext_mzmine2/_java_utils.py'
2024-01-08T13:46:25,493   adding 'emzed_ext_mzmine2/_mzmine2_default_adducts.json'
2024-01-08T13:46:25,517   adding 'emzed_ext_mzmine2/_mzmine2_parameter_classes.json'
2024-01-08T13:46:25,521   adding 'emzed_ext_mzmine2/_parameters.py'
2024-01-08T13:46:25,523   adding 'emzed_ext_mzmine2/_peak_resolvers.py'
2024-01-08T13:46:25,524   adding 'emzed_ext_mzmine2/_utils.py'
2024-01-08T13:46:25,526   adding 'emzed_ext_mzmine2/adduct_search.py'
2024-01-08T13:46:25,527   adding 'emzed_ext_mzmine2/fragment_search.py'
2024-01-08T13:46:25,528   adding 'emzed_ext_mzmine2/isotope_grouper.py'
2024-01-08T13:46:25,529   adding 'emzed_ext_mzmine2/join_aligner.py'
2024-01-08T13:46:25,531   adding 'emzed_ext_mzmine2/pick_peaks.py'
2024-01-08T13:46:25,532   adding 'emzed_ext_mzmine2/remove_shoulder_peaks.py'
2024-01-08T13:46:25,538   adding 'emzed_ext_mzmine2/java/extensions.jar'
2024-01-08T13:46:25,540   adding 'emzed_ext_mzmine2-3.0.0a2.dist-info/METADATA'
2024-01-08T13:46:25,541   adding 'emzed_ext_mzmine2-3.0.0a2.dist-info/WHEEL'
2024-01-08T13:46:25,542   adding 'emzed_ext_mzmine2-3.0.0a2.dist-info/top_level.txt'
2024-01-08T13:46:25,543   adding 'emzed_ext_mzmine2-3.0.0a2.dist-info/RECORD'
2024-01-08T13:46:25,545   removing build/bdist.linux-armv7l/wheel
2024-01-08T13:46:25,641   Building wheel for emzed-ext-mzmine2 (pyproject.toml): finished with status 'done'
2024-01-08T13:46:25,649   Created wheel for emzed-ext-mzmine2: filename=emzed_ext_mzmine2-3.0.0a2-py3-none-any.whl size=110200 sha256=8c52a672191e24bae3784cc02d697b80c21558bdfbeb1fa0a8a4aaccf46bb20c
2024-01-08T13:46:25,651   Stored in directory: /tmp/pip-ephem-wheel-cache-qrj9rgjg/wheels/ae/02/b5/7e4b367ad24642c990f28e6a03c3cb55ce3682a924be911196
2024-01-08T13:46:25,660 Successfully built emzed-ext-mzmine2
2024-01-08T13:46:25,667 Removed build tracker: '/tmp/pip-build-tracker-b2pj_5ek'