2024-01-08T22:25:18,933 Created temporary directory: /tmp/pip-build-tracker-sue4fgga 2024-01-08T22:25:18,934 Initialized build tracking at /tmp/pip-build-tracker-sue4fgga 2024-01-08T22:25:18,934 Created build tracker: /tmp/pip-build-tracker-sue4fgga 2024-01-08T22:25:18,935 Entered build tracker: /tmp/pip-build-tracker-sue4fgga 2024-01-08T22:25:18,935 Created temporary directory: /tmp/pip-wheel-ixghxtup 2024-01-08T22:25:18,939 Created temporary directory: /tmp/pip-ephem-wheel-cache-4h8mg1yo 2024-01-08T22:25:18,960 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-08T22:25:18,964 2 location(s) to search for versions of dedalus: 2024-01-08T22:25:18,964 * https://pypi.org/simple/dedalus/ 2024-01-08T22:25:18,964 * https://www.piwheels.org/simple/dedalus/ 2024-01-08T22:25:18,964 Fetching project page and analyzing links: https://pypi.org/simple/dedalus/ 2024-01-08T22:25:18,965 Getting page https://pypi.org/simple/dedalus/ 2024-01-08T22:25:18,967 Found index url https://pypi.org/simple/ 2024-01-08T22:25:19,174 Fetched page https://pypi.org/simple/dedalus/ as application/vnd.pypi.simple.v1+json 2024-01-08T22:25:19,178 Found link https://files.pythonhosted.org/packages/b0/14/0ff5a71edb6b24042c73c2f3f6399d53d5c8774286ffcd28a12bdfc605b9/dedalus-2.1810a1.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1810a1 2024-01-08T22:25:19,179 Found link https://files.pythonhosted.org/packages/e2/ca/5d0d3728868ae9fde3c2e291200fe3a96d2a66aa22119a2da4bd25a64f59/dedalus-2.1810a2.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1810a2 2024-01-08T22:25:19,180 Found link https://files.pythonhosted.org/packages/ec/34/03ef1e989cc8afed1906156481ee53fe4ac305c07147cf41195a31eac965/dedalus-2.1810a3.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1810a3 2024-01-08T22:25:19,180 Found link https://files.pythonhosted.org/packages/ba/bc/fdd40d0bbab4c5d6e98f71e33b52022894daf6b702086c287e98e115419c/dedalus-2.1810.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1810 2024-01-08T22:25:19,181 Found link https://files.pythonhosted.org/packages/7e/b5/b278399c1a9624c6f26665d3c0668e4ebaeff57c3943956b7354f4eae24f/dedalus-2.1905a1.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1905a1 2024-01-08T22:25:19,182 Found link https://files.pythonhosted.org/packages/f1/47/6fd2edd457e8bd73d375758a45633b217a7e6dba8d1c211ecfc86260d5d2/dedalus-2.1905a2.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1905a2 2024-01-08T22:25:19,183 Found link https://files.pythonhosted.org/packages/0e/1a/8b178bbc4c097e5485a841d9f0af8d9009c9d196b3b95afd86b3e889535c/dedalus-2.1905a3.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1905a3 2024-01-08T22:25:19,183 Found link https://files.pythonhosted.org/packages/19/56/7d68f1f71364cc048a4d651cb27db8138916162883bd4134a77424db6a85/dedalus-2.1905.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1905 2024-01-08T22:25:19,184 Found link https://files.pythonhosted.org/packages/47/74/1c69ee6ea00ad17d28fad84693158f43125ca9ab2cba2ff892a45d26e320/dedalus-2.2006a1.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.2006a1 2024-01-08T22:25:19,185 Found link https://files.pythonhosted.org/packages/a9/a9/676aab3727076de1b54a5465834eab64965e6bbc4af780274243554bd082/dedalus-2.2006.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.2006 2024-01-08T22:25:19,186 Found link https://files.pythonhosted.org/packages/bf/c5/7b02ced5397a7e18537d3a4a4c8c002a988e5b00318b290473b98e75e8b3/dedalus-2.2207a1.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.2207a1 2024-01-08T22:25:19,186 Found link https://files.pythonhosted.org/packages/6d/89/0f5b60cfd1d8dbe89f1f7293ee388ceef66f537ee8b5988cb6c7a8d35c6b/dedalus-2.2207.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.2207 2024-01-08T22:25:19,187 Found link https://files.pythonhosted.org/packages/80/c7/dbd9d9e7ea71d7257492d396bf23fd9731ed71fc881a938ac3c62613e490/dedalus-2.2207.1.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.2207.1 2024-01-08T22:25:19,188 Found link https://files.pythonhosted.org/packages/e3/b3/65770bba55872c9bd289ad2f8ee148db12f4ea78e50e17c083926521af98/dedalus-2.2207.2.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.2207.2 2024-01-08T22:25:19,188 Found link https://files.pythonhosted.org/packages/68/e2/2b8db73de77e5a6b42dc737d2f299f67adb2bc2751f6728d8f402d5f34b5/dedalus-2.2207.3.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.2207.3 2024-01-08T22:25:19,190 Found link https://files.pythonhosted.org/packages/af/7b/53327acc5c7d088603509b39a730277df3d4cd14337f8749633d206c21c2/dedalus-3.0.0.tar.gz (from https://pypi.org/simple/dedalus/) (requires-python:>=3.8), version: 3.0.0 2024-01-08T22:25:19,191 Found link https://files.pythonhosted.org/packages/af/52/6186559f1605ae8e0fc98fbd701ff192a05bcaa60c821f9faedd5d7e95d5/dedalus-3.0.1.tar.gz (from https://pypi.org/simple/dedalus/) (requires-python:>=3.8), version: 3.0.1 2024-01-08T22:25:19,191 Fetching project page and analyzing links: https://www.piwheels.org/simple/dedalus/ 2024-01-08T22:25:19,192 Getting page https://www.piwheels.org/simple/dedalus/ 2024-01-08T22:25:19,193 Found index url https://www.piwheels.org/simple/ 2024-01-08T22:25:19,352 Fetched page https://www.piwheels.org/simple/dedalus/ as text/html 2024-01-08T22:25:19,353 Skipping link: not a file: https://www.piwheels.org/simple/dedalus/ 2024-01-08T22:25:19,353 Skipping link: not a file: https://pypi.org/simple/dedalus/ 2024-01-08T22:25:19,373 Given no hashes to check 1 links for project 'dedalus': discarding no candidates 2024-01-08T22:25:19,391 Collecting dedalus==3.0.1 2024-01-08T22:25:19,393 Created temporary directory: /tmp/pip-unpack-rl1ngi1h 2024-01-08T22:25:19,603 Downloading dedalus-3.0.1.tar.gz (245 kB) 2024-01-08T22:25:19,907 Added dedalus==3.0.1 from https://files.pythonhosted.org/packages/af/52/6186559f1605ae8e0fc98fbd701ff192a05bcaa60c821f9faedd5d7e95d5/dedalus-3.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-sue4fgga' 2024-01-08T22:25:19,914 Created temporary directory: /tmp/pip-build-env-_ux7tu81 2024-01-08T22:25:19,918 Installing build dependencies: started 2024-01-08T22:25:19,920 Running command pip subprocess to install build dependencies 2024-01-08T22:25:21,044 Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-01-08T22:25:21,565 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-08T22:25:22,972 Collecting cython>=3.0.5 2024-01-08T22:25:22,988 Using cached https://www.piwheels.org/simple/cython/Cython-3.0.7-cp311-cp311-linux_armv7l.whl (11.7 MB) 2024-01-08T22:25:23,539 Collecting mpi4py>=2.0.0 2024-01-08T22:25:23,561 Using cached https://www.piwheels.org/simple/mpi4py/mpi4py-3.1.5-cp311-cp311-linux_armv7l.whl (2.8 MB) 2024-01-08T22:25:24,279 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2024-01-08T22:25:24,283 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2024-01-08T22:25:24,286 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2024-01-08T22:25:24,289 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2024-01-08T22:25:24,292 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2024-01-08T22:25:24,559 Collecting numpy>=1.20.0 2024-01-08T22:25:24,582 Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.3-cp311-cp311-linux_armv7l.whl (19.5 MB) 2024-01-08T22:25:26,268 Collecting setuptools 2024-01-08T22:25:26,281 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.0.3-py3-none-any.whl (819 kB) 2024-01-08T22:25:26,504 Collecting wheel 2024-01-08T22:25:26,518 Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB) 2024-01-08T22:25:29,183 Installing collected packages: wheel, setuptools, numpy, mpi4py, cython 2024-01-08T22:25:29,404 Creating /tmp/pip-build-env-_ux7tu81/overlay/local/bin 2024-01-08T22:25:29,407 changing mode of /tmp/pip-build-env-_ux7tu81/overlay/local/bin/wheel to 755 2024-01-08T22:25:39,691 changing mode of /tmp/pip-build-env-_ux7tu81/overlay/local/bin/f2py to 755 2024-01-08T22:25:43,570 changing mode of /tmp/pip-build-env-_ux7tu81/overlay/local/bin/cygdb to 755 2024-01-08T22:25:43,572 changing mode of /tmp/pip-build-env-_ux7tu81/overlay/local/bin/cython to 755 2024-01-08T22:25:43,574 changing mode of /tmp/pip-build-env-_ux7tu81/overlay/local/bin/cythonize to 755 2024-01-08T22:25:43,616 Successfully installed cython-3.0.7 mpi4py-3.1.5 numpy-1.26.3 setuptools-69.0.3 wheel-0.42.0 2024-01-08T22:25:43,889 [notice] A new release of pip is available: 23.3.1 -> 23.3.2 2024-01-08T22:25:43,890 [notice] To update, run: python3 -m pip install --upgrade pip 2024-01-08T22:25:44,318 Installing build dependencies: finished with status 'done' 2024-01-08T22:25:44,330 Getting requirements to build wheel: started 2024-01-08T22:25:44,331 Running command Getting requirements to build wheel 2024-01-08T22:26:02,709 Configuration: 2024-01-08T22:26:02,709 INCLUDE_MPI = True 2024-01-08T22:26:02,710 INCLUDE_FFTW = True 2024-01-08T22:26:02,710 FFTW_STATIC = False 2024-01-08T22:26:02,711 CYTHON_PROFILE = False 2024-01-08T22:26:02,712 Looking for mpi include path: 2024-01-08T22:26:02,712 Cannot find MPI_PATH, MPI_PREFIX, or libraries matching mpi. 2024-01-08T22:26:02,713 If mpi isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-08T22:26:02,714 Looking for mpi library path: 2024-01-08T22:26:02,714 Cannot find MPI_PATH, MPI_PREFIX, or libraries matching mpi. 2024-01-08T22:26:02,715 If mpi isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-08T22:26:02,715 Looking for fftw include path: 2024-01-08T22:26:02,716 Cannot find FFTW_PATH, FFTW_PREFIX, or libraries matching fftw. 2024-01-08T22:26:02,716 If fftw isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-08T22:26:02,717 Looking for fftw library path: 2024-01-08T22:26:02,718 Cannot find FFTW_PATH, FFTW_PREFIX, or libraries matching fftw. 2024-01-08T22:26:02,718 If fftw isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-08T22:26:02,719 Compiling dedalus/core/transposes.pyx because it changed. 2024-01-08T22:26:02,720 Compiling dedalus/tools/linalg.pyx because it changed. 2024-01-08T22:26:02,720 Compiling dedalus/libraries/fftw/fftw_wrappers.pyx because it changed. 2024-01-08T22:26:02,721 Compiling dedalus/libraries/spin_recombination.pyx because it changed. 2024-01-08T22:26:02,721 [1/4] Cythonizing dedalus/core/transposes.pyx 2024-01-08T22:26:02,722 [2/4] Cythonizing dedalus/libraries/fftw/fftw_wrappers.pyx 2024-01-08T22:26:02,722 [3/4] Cythonizing dedalus/libraries/spin_recombination.pyx 2024-01-08T22:26:02,723 [4/4] Cythonizing dedalus/tools/linalg.pyx 2024-01-08T22:26:02,786 running egg_info 2024-01-08T22:26:02,792 writing dedalus.egg-info/PKG-INFO 2024-01-08T22:26:02,796 writing dependency_links to dedalus.egg-info/dependency_links.txt 2024-01-08T22:26:02,797 writing entry points to dedalus.egg-info/entry_points.txt 2024-01-08T22:26:02,799 writing requirements to dedalus.egg-info/requires.txt 2024-01-08T22:26:02,800 writing top-level names to dedalus.egg-info/top_level.txt 2024-01-08T22:26:02,853 dependency /tmp/pip-build-env-_ux7tu81/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-08T22:26:02,854 dependency /tmp/pip-build-env-_ux7tu81/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-01-08T22:26:02,854 dependency /tmp/pip-build-env-_ux7tu81/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-08T22:26:02,855 dependency /tmp/pip-build-env-_ux7tu81/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-01-08T22:26:02,855 dependency /tmp/pip-build-env-_ux7tu81/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-01-08T22:26:02,856 dependency /tmp/pip-build-env-_ux7tu81/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-08T22:26:02,856 dependency /tmp/pip-build-env-_ux7tu81/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-01-08T22:26:02,857 dependency /tmp/pip-build-env-_ux7tu81/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-08T22:26:02,857 dependency /tmp/pip-build-env-_ux7tu81/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-01-08T22:26:02,858 dependency /tmp/pip-build-env-_ux7tu81/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-01-08T22:26:02,858 dependency /tmp/pip-build-env-_ux7tu81/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-08T22:26:02,859 dependency /tmp/pip-build-env-_ux7tu81/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-01-08T22:26:02,859 dependency /tmp/pip-build-env-_ux7tu81/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-08T22:26:02,860 dependency /tmp/pip-build-env-_ux7tu81/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-01-08T22:26:02,860 dependency /tmp/pip-build-env-_ux7tu81/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-01-08T22:26:02,861 reading manifest file 'dedalus.egg-info/SOURCES.txt' 2024-01-08T22:26:02,865 reading manifest template 'MANIFEST.in' 2024-01-08T22:26:02,878 adding license file 'LICENSE.txt' 2024-01-08T22:26:02,883 writing manifest file 'dedalus.egg-info/SOURCES.txt' 2024-01-08T22:26:04,133 Getting requirements to build wheel: finished with status 'done' 2024-01-08T22:26:04,142 Created temporary directory: /tmp/pip-modern-metadata-f98rr5rj 2024-01-08T22:26:04,145 Preparing metadata (pyproject.toml): started 2024-01-08T22:26:04,146 Running command Preparing metadata (pyproject.toml) 2024-01-08T22:26:05,775 Configuration: 2024-01-08T22:26:05,776 INCLUDE_MPI = True 2024-01-08T22:26:05,777 INCLUDE_FFTW = True 2024-01-08T22:26:05,777 FFTW_STATIC = False 2024-01-08T22:26:05,778 CYTHON_PROFILE = False 2024-01-08T22:26:05,778 Looking for mpi include path: 2024-01-08T22:26:05,779 Cannot find MPI_PATH, MPI_PREFIX, or libraries matching mpi. 2024-01-08T22:26:05,779 If mpi isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-08T22:26:05,780 Looking for mpi library path: 2024-01-08T22:26:05,780 Cannot find MPI_PATH, MPI_PREFIX, or libraries matching mpi. 2024-01-08T22:26:05,781 If mpi isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-08T22:26:05,781 Looking for fftw include path: 2024-01-08T22:26:05,781 Cannot find FFTW_PATH, FFTW_PREFIX, or libraries matching fftw. 2024-01-08T22:26:05,782 If fftw isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-08T22:26:05,782 Looking for fftw library path: 2024-01-08T22:26:05,783 Cannot find FFTW_PATH, FFTW_PREFIX, or libraries matching fftw. 2024-01-08T22:26:05,783 If fftw isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-08T22:26:05,826 running dist_info 2024-01-08T22:26:05,845 creating /tmp/pip-modern-metadata-f98rr5rj/dedalus.egg-info 2024-01-08T22:26:05,851 writing /tmp/pip-modern-metadata-f98rr5rj/dedalus.egg-info/PKG-INFO 2024-01-08T22:26:05,855 writing dependency_links to /tmp/pip-modern-metadata-f98rr5rj/dedalus.egg-info/dependency_links.txt 2024-01-08T22:26:05,856 writing entry points to /tmp/pip-modern-metadata-f98rr5rj/dedalus.egg-info/entry_points.txt 2024-01-08T22:26:05,858 writing requirements to /tmp/pip-modern-metadata-f98rr5rj/dedalus.egg-info/requires.txt 2024-01-08T22:26:05,859 writing top-level names to /tmp/pip-modern-metadata-f98rr5rj/dedalus.egg-info/top_level.txt 2024-01-08T22:26:05,860 writing manifest file '/tmp/pip-modern-metadata-f98rr5rj/dedalus.egg-info/SOURCES.txt' 2024-01-08T22:26:05,901 dependency /tmp/pip-build-env-_ux7tu81/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-08T22:26:05,902 dependency /tmp/pip-build-env-_ux7tu81/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-01-08T22:26:05,902 dependency /tmp/pip-build-env-_ux7tu81/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-08T22:26:05,903 dependency /tmp/pip-build-env-_ux7tu81/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-01-08T22:26:05,903 dependency /tmp/pip-build-env-_ux7tu81/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-01-08T22:26:05,904 dependency /tmp/pip-build-env-_ux7tu81/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-08T22:26:05,904 dependency /tmp/pip-build-env-_ux7tu81/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-01-08T22:26:05,905 dependency /tmp/pip-build-env-_ux7tu81/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-08T22:26:05,906 dependency /tmp/pip-build-env-_ux7tu81/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-01-08T22:26:05,906 dependency /tmp/pip-build-env-_ux7tu81/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-01-08T22:26:05,907 dependency /tmp/pip-build-env-_ux7tu81/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-08T22:26:05,908 dependency /tmp/pip-build-env-_ux7tu81/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-01-08T22:26:05,908 dependency /tmp/pip-build-env-_ux7tu81/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-08T22:26:05,909 dependency /tmp/pip-build-env-_ux7tu81/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-01-08T22:26:05,909 dependency /tmp/pip-build-env-_ux7tu81/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-01-08T22:26:05,911 reading manifest file '/tmp/pip-modern-metadata-f98rr5rj/dedalus.egg-info/SOURCES.txt' 2024-01-08T22:26:05,913 reading manifest template 'MANIFEST.in' 2024-01-08T22:26:05,925 adding license file 'LICENSE.txt' 2024-01-08T22:26:05,929 writing manifest file '/tmp/pip-modern-metadata-f98rr5rj/dedalus.egg-info/SOURCES.txt' 2024-01-08T22:26:05,930 creating '/tmp/pip-modern-metadata-f98rr5rj/dedalus-3.0.1.dist-info' 2024-01-08T22:26:06,190 Preparing metadata (pyproject.toml): finished with status 'done' 2024-01-08T22:26:06,195 Source in /tmp/pip-wheel-ixghxtup/dedalus_083405023d4d4ea4b9489b6d430dcfbd has version 3.0.1, which satisfies requirement dedalus==3.0.1 from https://files.pythonhosted.org/packages/af/52/6186559f1605ae8e0fc98fbd701ff192a05bcaa60c821f9faedd5d7e95d5/dedalus-3.0.1.tar.gz 2024-01-08T22:26:06,196 Removed dedalus==3.0.1 from https://files.pythonhosted.org/packages/af/52/6186559f1605ae8e0fc98fbd701ff192a05bcaa60c821f9faedd5d7e95d5/dedalus-3.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-sue4fgga' 2024-01-08T22:26:06,202 Created temporary directory: /tmp/pip-unpack-t35nqz5u 2024-01-08T22:26:06,203 Created temporary directory: /tmp/pip-unpack-7du6o84x 2024-01-08T22:26:06,221 Building wheels for collected packages: dedalus 2024-01-08T22:26:06,225 Created temporary directory: /tmp/pip-wheel-w__2cd3_ 2024-01-08T22:26:06,226 Destination directory: /tmp/pip-wheel-w__2cd3_ 2024-01-08T22:26:06,228 Building wheel for dedalus (pyproject.toml): started 2024-01-08T22:26:06,229 Running command Building wheel for dedalus (pyproject.toml) 2024-01-08T22:26:07,772 Configuration: 2024-01-08T22:26:07,773 INCLUDE_MPI = True 2024-01-08T22:26:07,774 INCLUDE_FFTW = True 2024-01-08T22:26:07,774 FFTW_STATIC = False 2024-01-08T22:26:07,775 CYTHON_PROFILE = False 2024-01-08T22:26:07,776 Looking for mpi include path: 2024-01-08T22:26:07,777 Cannot find MPI_PATH, MPI_PREFIX, or libraries matching mpi. 2024-01-08T22:26:07,777 If mpi isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-08T22:26:07,778 Looking for mpi library path: 2024-01-08T22:26:07,778 Cannot find MPI_PATH, MPI_PREFIX, or libraries matching mpi. 2024-01-08T22:26:07,779 If mpi isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-08T22:26:07,779 Looking for fftw include path: 2024-01-08T22:26:07,780 Cannot find FFTW_PATH, FFTW_PREFIX, or libraries matching fftw. 2024-01-08T22:26:07,781 If fftw isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-08T22:26:07,781 Looking for fftw library path: 2024-01-08T22:26:07,782 Cannot find FFTW_PATH, FFTW_PREFIX, or libraries matching fftw. 2024-01-08T22:26:07,783 If fftw isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-08T22:26:07,862 running bdist_wheel 2024-01-08T22:26:07,908 running build 2024-01-08T22:26:07,911 running build_py 2024-01-08T22:26:07,923 creating build 2024-01-08T22:26:07,923 creating build/lib.linux-armv7l-cpython-311 2024-01-08T22:26:07,924 creating build/lib.linux-armv7l-cpython-311/dedalus 2024-01-08T22:26:07,925 copying dedalus/__main__.py -> build/lib.linux-armv7l-cpython-311/dedalus 2024-01-08T22:26:07,927 copying dedalus/public.py -> build/lib.linux-armv7l-cpython-311/dedalus 2024-01-08T22:26:07,929 copying dedalus/dev.py -> build/lib.linux-armv7l-cpython-311/dedalus 2024-01-08T22:26:07,930 copying dedalus/__init__.py -> build/lib.linux-armv7l-cpython-311/dedalus 2024-01-08T22:26:07,933 creating build/lib.linux-armv7l-cpython-311/dedalus/extras 2024-01-08T22:26:07,933 copying dedalus/extras/plot_tools.py -> build/lib.linux-armv7l-cpython-311/dedalus/extras 2024-01-08T22:26:07,936 copying dedalus/extras/__init__.py -> build/lib.linux-armv7l-cpython-311/dedalus/extras 2024-01-08T22:26:07,938 copying dedalus/extras/flow_tools.py -> build/lib.linux-armv7l-cpython-311/dedalus/extras 2024-01-08T22:26:07,941 creating build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-08T22:26:07,942 copying dedalus/core/distributor.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-08T22:26:07,945 copying dedalus/core/solvers.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-08T22:26:07,948 copying dedalus/core/future.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-08T22:26:07,950 copying dedalus/core/arithmetic.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-08T22:26:07,953 copying dedalus/core/system.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-08T22:26:07,955 copying dedalus/core/transforms.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-08T22:26:07,959 copying dedalus/core/domain.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-08T22:26:07,961 copying dedalus/core/timesteppers.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-08T22:26:07,964 copying dedalus/core/operators.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-08T22:26:07,971 copying dedalus/core/basis.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-08T22:26:07,981 copying dedalus/core/problems.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-08T22:26:07,984 copying dedalus/core/field.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-08T22:26:07,987 copying dedalus/core/coords.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-08T22:26:07,990 copying dedalus/core/__init__.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-08T22:26:07,991 copying dedalus/core/subsystems.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-08T22:26:07,994 copying dedalus/core/evaluator.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-08T22:26:07,999 creating build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-08T22:26:08,000 copying dedalus/tests/test_spherical_arithmetic.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-08T22:26:08,002 copying dedalus/tests/test_fourier_operators.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-08T22:26:08,004 copying dedalus/tests/test_transforms.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-08T22:26:08,007 copying dedalus/tests/ball_diffusion_analytical_eigenvalues.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-08T22:26:08,009 copying dedalus/tests/test_cartesian_operators.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-08T22:26:08,012 copying dedalus/tests/test_clenshaw.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-08T22:26:08,014 copying dedalus/tests/test_sphere_calculus.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-08T22:26:08,016 copying dedalus/tests/test_jacobi_operators.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-08T22:26:08,019 copying dedalus/tests/test_polar_calculus.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-08T22:26:08,021 copying dedalus/tests/test_spherical_operators.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-08T22:26:08,024 copying dedalus/tests/test_polar_ncc.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-08T22:26:08,027 copying dedalus/tests/test_cartesian_ncc.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-08T22:26:08,029 copying dedalus/tests/test_cylinder_calculus.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-08T22:26:08,031 copying dedalus/tests/test_cylinder_ncc.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-08T22:26:08,033 copying dedalus/tests/test_sphere_ncc.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-08T22:26:08,036 copying dedalus/tests/test_ivp.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-08T22:26:08,037 copying dedalus/tests/test_polar_operators.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-08T22:26:08,040 copying dedalus/tests/test_grid_operators.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-08T22:26:08,042 copying dedalus/tests/test_cylinder_operators.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-08T22:26:08,044 copying dedalus/tests/test_spherical_calculus.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-08T22:26:08,046 copying dedalus/tests/test_spherical_ncc.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-08T22:26:08,048 copying dedalus/tests/test_lbvp.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-08T22:26:08,051 copying dedalus/tests/test_evp.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-08T22:26:08,054 copying dedalus/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-08T22:26:08,055 copying dedalus/tests/test_nlbvp.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-08T22:26:08,058 copying dedalus/tests/test_output.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-08T22:26:08,060 copying dedalus/tests/test_cfl.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-08T22:26:08,063 creating build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-08T22:26:08,064 copying dedalus/tools/array.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-08T22:26:08,066 copying dedalus/tools/general.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-08T22:26:08,068 copying dedalus/tools/config.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-08T22:26:08,070 copying dedalus/tools/jacobi.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-08T22:26:08,072 copying dedalus/tools/dispatch.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-08T22:26:08,074 copying dedalus/tools/cache.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-08T22:26:08,076 copying dedalus/tools/parsing.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-08T22:26:08,078 copying dedalus/tools/exceptions.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-08T22:26:08,079 copying dedalus/tools/progress.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-08T22:26:08,081 copying dedalus/tools/parallel.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-08T22:26:08,083 copying dedalus/tools/clenshaw.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-08T22:26:08,085 copying dedalus/tools/post.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-08T22:26:08,088 copying dedalus/tools/random_arrays.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-08T22:26:08,090 copying dedalus/tools/logging.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-08T22:26:08,092 copying dedalus/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-08T22:26:08,093 copying dedalus/tools/plot_op.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-08T22:26:08,096 creating build/lib.linux-armv7l-cpython-311/dedalus/libraries 2024-01-08T22:26:08,097 copying dedalus/libraries/matsolvers.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries 2024-01-08T22:26:08,099 copying dedalus/libraries/__init__.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries 2024-01-08T22:26:08,101 creating build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-08T22:26:08,102 copying dedalus/libraries/dedalus_sphere/ball_wrapper.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-08T22:26:08,105 copying dedalus/libraries/dedalus_sphere/sphere.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-08T22:26:08,107 copying dedalus/libraries/dedalus_sphere/tuple_tools.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-08T22:26:08,109 copying dedalus/libraries/dedalus_sphere/jacobi.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-08T22:26:08,111 copying dedalus/libraries/dedalus_sphere/timesteppers.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-08T22:26:08,114 copying dedalus/libraries/dedalus_sphere/operators.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-08T22:26:08,116 copying dedalus/libraries/dedalus_sphere/spin_operators.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-08T22:26:08,118 copying dedalus/libraries/dedalus_sphere/zernike.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-08T22:26:08,120 copying dedalus/libraries/dedalus_sphere/clenshaw.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-08T22:26:08,122 copying dedalus/libraries/dedalus_sphere/sphere_wrapper.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-08T22:26:08,124 copying dedalus/libraries/dedalus_sphere/annulus.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-08T22:26:08,126 copying dedalus/libraries/dedalus_sphere/__init__.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-08T22:26:08,128 copying dedalus/libraries/dedalus_sphere/shell.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-08T22:26:08,130 copying dedalus/libraries/dedalus_sphere/old_intertwiner.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-08T22:26:08,132 creating build/lib.linux-armv7l-cpython-311/dedalus/libraries/fftw 2024-01-08T22:26:08,133 copying dedalus/libraries/fftw/__init__.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/fftw 2024-01-08T22:26:08,139 copying dedalus/dedalus.cfg -> build/lib.linux-armv7l-cpython-311/dedalus 2024-01-08T22:26:08,142 copying dedalus/examples.tar.gz -> build/lib.linux-armv7l-cpython-311/dedalus 2024-01-08T22:26:08,149 running build_ext 2024-01-08T22:26:08,155 building 'dedalus.core.transposes' extension 2024-01-08T22:26:08,155 creating build/temp.linux-armv7l-cpython-311 2024-01-08T22:26:08,156 creating build/temp.linux-armv7l-cpython-311/dedalus 2024-01-08T22:26:08,157 creating build/temp.linux-armv7l-cpython-311/dedalus/core 2024-01-08T22:26:08,158 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-_ux7tu81/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/tmp/pip-build-env-_ux7tu81/overlay/local/lib/python3.11/dist-packages/mpi4py/include -Idedalus/libraries/fftw/ -I/usr/include/python3.11 -c dedalus/core/transposes.c -o build/temp.linux-armv7l-cpython-311/dedalus/core/transposes.o -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -Wno-unused-function -fopenmp 2024-01-08T22:26:08,625 dedalus/core/transposes.c:1235:10: fatal error: mpi.h: No such file or directory 2024-01-08T22:26:08,626 1235 | #include "mpi.h" 2024-01-08T22:26:08,627 | ^~~~~~~ 2024-01-08T22:26:08,627 compilation terminated. 2024-01-08T22:26:08,632 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2024-01-08T22:26:08,800 ERROR: Building wheel for dedalus (pyproject.toml) exited with 1 2024-01-08T22:26:08,813 [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/local/lib/python3.11/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmppc5ddaog[/] 2024-01-08T22:26:08,814 [bold magenta]cwd[/]: /tmp/pip-wheel-ixghxtup/dedalus_083405023d4d4ea4b9489b6d430dcfbd 2024-01-08T22:26:08,814 Building wheel for dedalus (pyproject.toml): finished with status 'error' 2024-01-08T22:26:08,816 ERROR: Failed building wheel for dedalus 2024-01-08T22:26:08,819 Failed to build dedalus 2024-01-08T22:26:08,820 ERROR: Failed to build one or more wheels 2024-01-08T22:26:08,821 Exception information: 2024-01-08T22:26:08,821 Traceback (most recent call last): 2024-01-08T22:26:08,821 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2024-01-08T22:26:08,821 status = run_func(*args) 2024-01-08T22:26:08,821 ^^^^^^^^^^^^^^^ 2024-01-08T22:26:08,821 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 245, in wrapper 2024-01-08T22:26:08,821 return func(self, options, args) 2024-01-08T22:26:08,821 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-01-08T22:26:08,821 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run 2024-01-08T22:26:08,821 raise CommandError("Failed to build one or more wheels") 2024-01-08T22:26:08,821 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2024-01-08T22:26:08,825 Removed build tracker: '/tmp/pip-build-tracker-sue4fgga'