2024-01-09T00:29:32,505 Created temporary directory: /tmp/pip-build-tracker-b0bnvzgi 2024-01-09T00:29:32,507 Initialized build tracking at /tmp/pip-build-tracker-b0bnvzgi 2024-01-09T00:29:32,507 Created build tracker: /tmp/pip-build-tracker-b0bnvzgi 2024-01-09T00:29:32,507 Entered build tracker: /tmp/pip-build-tracker-b0bnvzgi 2024-01-09T00:29:32,508 Created temporary directory: /tmp/pip-wheel-gc3_ue0m 2024-01-09T00:29:32,512 Created temporary directory: /tmp/pip-ephem-wheel-cache-buy3u1z7 2024-01-09T00:29:32,536 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-09T00:29:32,540 2 location(s) to search for versions of dedalus: 2024-01-09T00:29:32,540 * https://pypi.org/simple/dedalus/ 2024-01-09T00:29:32,540 * https://www.piwheels.org/simple/dedalus/ 2024-01-09T00:29:32,540 Fetching project page and analyzing links: https://pypi.org/simple/dedalus/ 2024-01-09T00:29:32,541 Getting page https://pypi.org/simple/dedalus/ 2024-01-09T00:29:32,542 Found index url https://pypi.org/simple/ 2024-01-09T00:29:32,593 Fetched page https://pypi.org/simple/dedalus/ as application/vnd.pypi.simple.v1+json 2024-01-09T00:29:32,597 Found link https://files.pythonhosted.org/packages/b0/14/0ff5a71edb6b24042c73c2f3f6399d53d5c8774286ffcd28a12bdfc605b9/dedalus-2.1810a1.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1810a1 2024-01-09T00:29:32,597 Found link https://files.pythonhosted.org/packages/e2/ca/5d0d3728868ae9fde3c2e291200fe3a96d2a66aa22119a2da4bd25a64f59/dedalus-2.1810a2.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1810a2 2024-01-09T00:29:32,597 Found link https://files.pythonhosted.org/packages/ec/34/03ef1e989cc8afed1906156481ee53fe4ac305c07147cf41195a31eac965/dedalus-2.1810a3.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1810a3 2024-01-09T00:29:32,597 Found link https://files.pythonhosted.org/packages/ba/bc/fdd40d0bbab4c5d6e98f71e33b52022894daf6b702086c287e98e115419c/dedalus-2.1810.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1810 2024-01-09T00:29:32,598 Found link https://files.pythonhosted.org/packages/7e/b5/b278399c1a9624c6f26665d3c0668e4ebaeff57c3943956b7354f4eae24f/dedalus-2.1905a1.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1905a1 2024-01-09T00:29:32,598 Found link https://files.pythonhosted.org/packages/f1/47/6fd2edd457e8bd73d375758a45633b217a7e6dba8d1c211ecfc86260d5d2/dedalus-2.1905a2.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1905a2 2024-01-09T00:29:32,598 Found link https://files.pythonhosted.org/packages/0e/1a/8b178bbc4c097e5485a841d9f0af8d9009c9d196b3b95afd86b3e889535c/dedalus-2.1905a3.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1905a3 2024-01-09T00:29:32,599 Found link https://files.pythonhosted.org/packages/19/56/7d68f1f71364cc048a4d651cb27db8138916162883bd4134a77424db6a85/dedalus-2.1905.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1905 2024-01-09T00:29:32,599 Found link https://files.pythonhosted.org/packages/47/74/1c69ee6ea00ad17d28fad84693158f43125ca9ab2cba2ff892a45d26e320/dedalus-2.2006a1.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.2006a1 2024-01-09T00:29:32,599 Found link https://files.pythonhosted.org/packages/a9/a9/676aab3727076de1b54a5465834eab64965e6bbc4af780274243554bd082/dedalus-2.2006.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.2006 2024-01-09T00:29:32,599 Found link https://files.pythonhosted.org/packages/bf/c5/7b02ced5397a7e18537d3a4a4c8c002a988e5b00318b290473b98e75e8b3/dedalus-2.2207a1.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.2207a1 2024-01-09T00:29:32,600 Found link https://files.pythonhosted.org/packages/6d/89/0f5b60cfd1d8dbe89f1f7293ee388ceef66f537ee8b5988cb6c7a8d35c6b/dedalus-2.2207.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.2207 2024-01-09T00:29:32,600 Found link https://files.pythonhosted.org/packages/80/c7/dbd9d9e7ea71d7257492d396bf23fd9731ed71fc881a938ac3c62613e490/dedalus-2.2207.1.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.2207.1 2024-01-09T00:29:32,600 Found link https://files.pythonhosted.org/packages/e3/b3/65770bba55872c9bd289ad2f8ee148db12f4ea78e50e17c083926521af98/dedalus-2.2207.2.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.2207.2 2024-01-09T00:29:32,601 Found link https://files.pythonhosted.org/packages/68/e2/2b8db73de77e5a6b42dc737d2f299f67adb2bc2751f6728d8f402d5f34b5/dedalus-2.2207.3.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.2207.3 2024-01-09T00:29:32,601 Found link https://files.pythonhosted.org/packages/af/7b/53327acc5c7d088603509b39a730277df3d4cd14337f8749633d206c21c2/dedalus-3.0.0.tar.gz (from https://pypi.org/simple/dedalus/) (requires-python:>=3.8), version: 3.0.0 2024-01-09T00:29:32,602 Found link https://files.pythonhosted.org/packages/af/52/6186559f1605ae8e0fc98fbd701ff192a05bcaa60c821f9faedd5d7e95d5/dedalus-3.0.1.tar.gz (from https://pypi.org/simple/dedalus/) (requires-python:>=3.8), version: 3.0.1 2024-01-09T00:29:32,602 Fetching project page and analyzing links: https://www.piwheels.org/simple/dedalus/ 2024-01-09T00:29:32,603 Getting page https://www.piwheels.org/simple/dedalus/ 2024-01-09T00:29:32,604 Found index url https://www.piwheels.org/simple/ 2024-01-09T00:29:32,679 Fetched page https://www.piwheels.org/simple/dedalus/ as text/html 2024-01-09T00:29:32,679 Skipping link: not a file: https://www.piwheels.org/simple/dedalus/ 2024-01-09T00:29:32,680 Skipping link: not a file: https://pypi.org/simple/dedalus/ 2024-01-09T00:29:32,698 Given no hashes to check 1 links for project 'dedalus': discarding no candidates 2024-01-09T00:29:32,715 Collecting dedalus==3.0.1 2024-01-09T00:29:32,717 Created temporary directory: /tmp/pip-unpack-c2h0l43r 2024-01-09T00:29:32,761 Downloading dedalus-3.0.1.tar.gz (245 kB) 2024-01-09T00:29:33,058 Added dedalus==3.0.1 from https://files.pythonhosted.org/packages/af/52/6186559f1605ae8e0fc98fbd701ff192a05bcaa60c821f9faedd5d7e95d5/dedalus-3.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-b0bnvzgi' 2024-01-09T00:29:33,065 Created temporary directory: /tmp/pip-build-env-ukco0x3s 2024-01-09T00:29:33,075 Installing build dependencies: started 2024-01-09T00:29:33,076 Running command pip subprocess to install build dependencies 2024-01-09T00:29:34,219 Using pip 23.3.1 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9) 2024-01-09T00:29:34,746 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-09T00:29:36,103 Collecting cython>=3.0.5 2024-01-09T00:29:36,123 Using cached https://www.piwheels.org/simple/cython/Cython-3.0.7-cp39-cp39-linux_armv7l.whl (10.7 MB) 2024-01-09T00:29:36,650 Collecting mpi4py>=2.0.0 2024-01-09T00:29:36,669 Using cached https://www.piwheels.org/simple/mpi4py/mpi4py-3.1.5-cp39-cp39-linux_armv7l.whl (2.9 MB) 2024-01-09T00:29:37,725 Collecting numpy>=1.20.0 2024-01-09T00:29:37,744 Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.3-cp39-cp39-linux_armv7l.whl (19.4 MB) 2024-01-09T00:29:39,662 Collecting setuptools 2024-01-09T00:29:39,678 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.0.3-py3-none-any.whl (819 kB) 2024-01-09T00:29:39,926 Collecting wheel 2024-01-09T00:29:39,942 Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB) 2024-01-09T00:29:41,714 Installing collected packages: wheel, setuptools, numpy, mpi4py, cython 2024-01-09T00:29:41,937 Creating /tmp/pip-build-env-ukco0x3s/overlay/bin 2024-01-09T00:29:41,939 changing mode of /tmp/pip-build-env-ukco0x3s/overlay/bin/wheel to 755 2024-01-09T00:29:51,659 changing mode of /tmp/pip-build-env-ukco0x3s/overlay/bin/f2py to 755 2024-01-09T00:29:55,511 changing mode of /tmp/pip-build-env-ukco0x3s/overlay/bin/cygdb to 755 2024-01-09T00:29:55,514 changing mode of /tmp/pip-build-env-ukco0x3s/overlay/bin/cython to 755 2024-01-09T00:29:55,516 changing mode of /tmp/pip-build-env-ukco0x3s/overlay/bin/cythonize to 755 2024-01-09T00:29:55,542 ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. 2024-01-09T00:29:55,542 scipy 1.8.1 requires numpy<1.25.0,>=1.17.3, but you have numpy 1.26.3 which is incompatible. 2024-01-09T00:29:55,544 Successfully installed cython-3.0.7 mpi4py-3.1.5 numpy-1.26.3 setuptools-69.0.3 wheel-0.42.0 2024-01-09T00:29:55,729 [notice] A new release of pip is available: 23.3.1 -> 23.3.2 2024-01-09T00:29:55,729 [notice] To update, run: python3 -m pip install --upgrade pip 2024-01-09T00:29:56,160 Installing build dependencies: finished with status 'done' 2024-01-09T00:29:56,171 Getting requirements to build wheel: started 2024-01-09T00:29:56,172 Running command Getting requirements to build wheel 2024-01-09T00:30:17,656 Configuration: 2024-01-09T00:30:17,656 INCLUDE_MPI = True 2024-01-09T00:30:17,656 INCLUDE_FFTW = True 2024-01-09T00:30:17,657 FFTW_STATIC = False 2024-01-09T00:30:17,657 CYTHON_PROFILE = False 2024-01-09T00:30:17,657 Looking for mpi include path: 2024-01-09T00:30:17,658 Cannot find MPI_PATH, MPI_PREFIX, or libraries matching mpi. 2024-01-09T00:30:17,658 If mpi isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-09T00:30:17,658 Looking for mpi library path: 2024-01-09T00:30:17,658 Cannot find MPI_PATH, MPI_PREFIX, or libraries matching mpi. 2024-01-09T00:30:17,659 If mpi isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-09T00:30:17,659 Looking for fftw include path: 2024-01-09T00:30:17,659 Cannot find FFTW_PATH, FFTW_PREFIX, or libraries matching fftw. 2024-01-09T00:30:17,659 If fftw isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-09T00:30:17,660 Looking for fftw library path: 2024-01-09T00:30:17,660 Cannot find FFTW_PATH, FFTW_PREFIX, or libraries matching fftw. 2024-01-09T00:30:17,660 If fftw isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-09T00:30:17,661 Compiling dedalus/core/transposes.pyx because it changed. 2024-01-09T00:30:17,661 Compiling dedalus/tools/linalg.pyx because it changed. 2024-01-09T00:30:17,661 Compiling dedalus/libraries/fftw/fftw_wrappers.pyx because it changed. 2024-01-09T00:30:17,661 Compiling dedalus/libraries/spin_recombination.pyx because it changed. 2024-01-09T00:30:17,662 [1/4] Cythonizing dedalus/core/transposes.pyx 2024-01-09T00:30:17,662 [2/4] Cythonizing dedalus/libraries/fftw/fftw_wrappers.pyx 2024-01-09T00:30:17,662 [3/4] Cythonizing dedalus/libraries/spin_recombination.pyx 2024-01-09T00:30:17,662 [4/4] Cythonizing dedalus/tools/linalg.pyx 2024-01-09T00:30:17,785 running egg_info 2024-01-09T00:30:17,792 writing dedalus.egg-info/PKG-INFO 2024-01-09T00:30:17,797 writing dependency_links to dedalus.egg-info/dependency_links.txt 2024-01-09T00:30:17,799 writing entry points to dedalus.egg-info/entry_points.txt 2024-01-09T00:30:17,800 writing requirements to dedalus.egg-info/requires.txt 2024-01-09T00:30:17,802 writing top-level names to dedalus.egg-info/top_level.txt 2024-01-09T00:30:17,881 dependency /tmp/pip-build-env-ukco0x3s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-09T00:30:17,882 dependency /tmp/pip-build-env-ukco0x3s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-01-09T00:30:17,882 dependency /tmp/pip-build-env-ukco0x3s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-09T00:30:17,882 dependency /tmp/pip-build-env-ukco0x3s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-01-09T00:30:17,882 dependency /tmp/pip-build-env-ukco0x3s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-01-09T00:30:17,882 dependency /tmp/pip-build-env-ukco0x3s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-09T00:30:17,882 dependency /tmp/pip-build-env-ukco0x3s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-01-09T00:30:17,883 dependency /tmp/pip-build-env-ukco0x3s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-09T00:30:17,883 dependency /tmp/pip-build-env-ukco0x3s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-01-09T00:30:17,883 dependency /tmp/pip-build-env-ukco0x3s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-01-09T00:30:17,883 dependency /tmp/pip-build-env-ukco0x3s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-09T00:30:17,883 dependency /tmp/pip-build-env-ukco0x3s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-01-09T00:30:17,883 dependency /tmp/pip-build-env-ukco0x3s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-09T00:30:17,883 dependency /tmp/pip-build-env-ukco0x3s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-01-09T00:30:17,884 dependency /tmp/pip-build-env-ukco0x3s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-01-09T00:30:17,889 reading manifest file 'dedalus.egg-info/SOURCES.txt' 2024-01-09T00:30:17,894 reading manifest template 'MANIFEST.in' 2024-01-09T00:30:17,911 adding license file 'LICENSE.txt' 2024-01-09T00:30:17,918 writing manifest file 'dedalus.egg-info/SOURCES.txt' 2024-01-09T00:30:19,068 Getting requirements to build wheel: finished with status 'done' 2024-01-09T00:30:19,078 Created temporary directory: /tmp/pip-modern-metadata-_ok7tdjh 2024-01-09T00:30:19,080 Preparing metadata (pyproject.toml): started 2024-01-09T00:30:19,081 Running command Preparing metadata (pyproject.toml) 2024-01-09T00:30:20,800 Configuration: 2024-01-09T00:30:20,800 INCLUDE_MPI = True 2024-01-09T00:30:20,801 INCLUDE_FFTW = True 2024-01-09T00:30:20,801 FFTW_STATIC = False 2024-01-09T00:30:20,801 CYTHON_PROFILE = False 2024-01-09T00:30:20,801 Looking for mpi include path: 2024-01-09T00:30:20,801 Cannot find MPI_PATH, MPI_PREFIX, or libraries matching mpi. 2024-01-09T00:30:20,801 If mpi isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-09T00:30:20,802 Looking for mpi library path: 2024-01-09T00:30:20,802 Cannot find MPI_PATH, MPI_PREFIX, or libraries matching mpi. 2024-01-09T00:30:20,802 If mpi isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-09T00:30:20,802 Looking for fftw include path: 2024-01-09T00:30:20,802 Cannot find FFTW_PATH, FFTW_PREFIX, or libraries matching fftw. 2024-01-09T00:30:20,802 If fftw isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-09T00:30:20,802 Looking for fftw library path: 2024-01-09T00:30:20,802 Cannot find FFTW_PATH, FFTW_PREFIX, or libraries matching fftw. 2024-01-09T00:30:20,803 If fftw isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-09T00:30:20,852 running dist_info 2024-01-09T00:30:20,871 creating /tmp/pip-modern-metadata-_ok7tdjh/dedalus.egg-info 2024-01-09T00:30:20,877 writing /tmp/pip-modern-metadata-_ok7tdjh/dedalus.egg-info/PKG-INFO 2024-01-09T00:30:20,881 writing dependency_links to /tmp/pip-modern-metadata-_ok7tdjh/dedalus.egg-info/dependency_links.txt 2024-01-09T00:30:20,882 writing entry points to /tmp/pip-modern-metadata-_ok7tdjh/dedalus.egg-info/entry_points.txt 2024-01-09T00:30:20,884 writing requirements to /tmp/pip-modern-metadata-_ok7tdjh/dedalus.egg-info/requires.txt 2024-01-09T00:30:20,885 writing top-level names to /tmp/pip-modern-metadata-_ok7tdjh/dedalus.egg-info/top_level.txt 2024-01-09T00:30:20,886 writing manifest file '/tmp/pip-modern-metadata-_ok7tdjh/dedalus.egg-info/SOURCES.txt' 2024-01-09T00:30:20,929 dependency /tmp/pip-build-env-ukco0x3s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-09T00:30:20,930 dependency /tmp/pip-build-env-ukco0x3s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-01-09T00:30:20,930 dependency /tmp/pip-build-env-ukco0x3s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-09T00:30:20,930 dependency /tmp/pip-build-env-ukco0x3s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-01-09T00:30:20,930 dependency /tmp/pip-build-env-ukco0x3s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-01-09T00:30:20,930 dependency /tmp/pip-build-env-ukco0x3s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-09T00:30:20,930 dependency /tmp/pip-build-env-ukco0x3s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-01-09T00:30:20,930 dependency /tmp/pip-build-env-ukco0x3s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-09T00:30:20,931 dependency /tmp/pip-build-env-ukco0x3s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-01-09T00:30:20,931 dependency /tmp/pip-build-env-ukco0x3s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-01-09T00:30:20,931 dependency /tmp/pip-build-env-ukco0x3s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-09T00:30:20,931 dependency /tmp/pip-build-env-ukco0x3s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-01-09T00:30:20,931 dependency /tmp/pip-build-env-ukco0x3s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-09T00:30:20,931 dependency /tmp/pip-build-env-ukco0x3s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-01-09T00:30:20,931 dependency /tmp/pip-build-env-ukco0x3s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-01-09T00:30:20,936 reading manifest file '/tmp/pip-modern-metadata-_ok7tdjh/dedalus.egg-info/SOURCES.txt' 2024-01-09T00:30:20,938 reading manifest template 'MANIFEST.in' 2024-01-09T00:30:20,954 adding license file 'LICENSE.txt' 2024-01-09T00:30:20,959 writing manifest file '/tmp/pip-modern-metadata-_ok7tdjh/dedalus.egg-info/SOURCES.txt' 2024-01-09T00:30:20,960 creating '/tmp/pip-modern-metadata-_ok7tdjh/dedalus-3.0.1.dist-info' 2024-01-09T00:30:21,186 Preparing metadata (pyproject.toml): finished with status 'done' 2024-01-09T00:30:21,193 Source in /tmp/pip-wheel-gc3_ue0m/dedalus_fa8d90eafd154f5a837450c4c50796b0 has version 3.0.1, which satisfies requirement dedalus==3.0.1 from https://files.pythonhosted.org/packages/af/52/6186559f1605ae8e0fc98fbd701ff192a05bcaa60c821f9faedd5d7e95d5/dedalus-3.0.1.tar.gz 2024-01-09T00:30:21,193 Removed dedalus==3.0.1 from https://files.pythonhosted.org/packages/af/52/6186559f1605ae8e0fc98fbd701ff192a05bcaa60c821f9faedd5d7e95d5/dedalus-3.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-b0bnvzgi' 2024-01-09T00:30:21,200 Created temporary directory: /tmp/pip-unpack-bkzqwnck 2024-01-09T00:30:21,200 Created temporary directory: /tmp/pip-unpack-8ye05__q 2024-01-09T00:30:21,218 Building wheels for collected packages: dedalus 2024-01-09T00:30:21,222 Created temporary directory: /tmp/pip-wheel-79gmmx1w 2024-01-09T00:30:21,223 Destination directory: /tmp/pip-wheel-79gmmx1w 2024-01-09T00:30:21,225 Building wheel for dedalus (pyproject.toml): started 2024-01-09T00:30:21,226 Running command Building wheel for dedalus (pyproject.toml) 2024-01-09T00:30:22,845 Configuration: 2024-01-09T00:30:22,845 INCLUDE_MPI = True 2024-01-09T00:30:22,845 INCLUDE_FFTW = True 2024-01-09T00:30:22,845 FFTW_STATIC = False 2024-01-09T00:30:22,845 CYTHON_PROFILE = False 2024-01-09T00:30:22,846 Looking for mpi include path: 2024-01-09T00:30:22,846 Cannot find MPI_PATH, MPI_PREFIX, or libraries matching mpi. 2024-01-09T00:30:22,846 If mpi isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-09T00:30:22,846 Looking for mpi library path: 2024-01-09T00:30:22,846 Cannot find MPI_PATH, MPI_PREFIX, or libraries matching mpi. 2024-01-09T00:30:22,846 If mpi isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-09T00:30:22,846 Looking for fftw include path: 2024-01-09T00:30:22,847 Cannot find FFTW_PATH, FFTW_PREFIX, or libraries matching fftw. 2024-01-09T00:30:22,847 If fftw isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-09T00:30:22,847 Looking for fftw library path: 2024-01-09T00:30:22,847 Cannot find FFTW_PATH, FFTW_PREFIX, or libraries matching fftw. 2024-01-09T00:30:22,847 If fftw isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-09T00:30:22,939 running bdist_wheel 2024-01-09T00:30:22,989 running build 2024-01-09T00:30:22,992 running build_py 2024-01-09T00:30:23,001 creating build 2024-01-09T00:30:23,002 creating build/lib.linux-armv7l-cpython-39 2024-01-09T00:30:23,002 creating build/lib.linux-armv7l-cpython-39/dedalus 2024-01-09T00:30:23,004 copying dedalus/__main__.py -> build/lib.linux-armv7l-cpython-39/dedalus 2024-01-09T00:30:23,005 copying dedalus/__init__.py -> build/lib.linux-armv7l-cpython-39/dedalus 2024-01-09T00:30:23,007 copying dedalus/public.py -> build/lib.linux-armv7l-cpython-39/dedalus 2024-01-09T00:30:23,009 copying dedalus/dev.py -> build/lib.linux-armv7l-cpython-39/dedalus 2024-01-09T00:30:23,011 creating build/lib.linux-armv7l-cpython-39/dedalus/libraries 2024-01-09T00:30:23,011 copying dedalus/libraries/__init__.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries 2024-01-09T00:30:23,013 copying dedalus/libraries/matsolvers.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries 2024-01-09T00:30:23,016 creating build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-09T00:30:23,017 copying dedalus/core/distributor.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-09T00:30:23,020 copying dedalus/core/future.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-09T00:30:23,022 copying dedalus/core/problems.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-09T00:30:23,025 copying dedalus/core/basis.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-09T00:30:23,031 copying dedalus/core/__init__.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-09T00:30:23,033 copying dedalus/core/system.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-09T00:30:23,035 copying dedalus/core/transforms.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-09T00:30:23,038 copying dedalus/core/field.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-09T00:30:23,041 copying dedalus/core/timesteppers.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-09T00:30:23,043 copying dedalus/core/arithmetic.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-09T00:30:23,046 copying dedalus/core/subsystems.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-09T00:30:23,049 copying dedalus/core/operators.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-09T00:30:23,054 copying dedalus/core/solvers.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-09T00:30:23,057 copying dedalus/core/domain.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-09T00:30:23,059 copying dedalus/core/evaluator.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-09T00:30:23,062 copying dedalus/core/coords.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-09T00:30:23,066 creating build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-09T00:30:23,067 copying dedalus/tests/test_output.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-09T00:30:23,069 copying dedalus/tests/test_spherical_arithmetic.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-09T00:30:23,071 copying dedalus/tests/test_polar_calculus.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-09T00:30:23,073 copying dedalus/tests/test_spherical_ncc.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-09T00:30:23,075 copying dedalus/tests/test_cylinder_calculus.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-09T00:30:23,077 copying dedalus/tests/test_clenshaw.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-09T00:30:23,079 copying dedalus/tests/test_spherical_operators.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-09T00:30:23,082 copying dedalus/tests/test_cartesian_ncc.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-09T00:30:23,084 copying dedalus/tests/test_sphere_ncc.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-09T00:30:23,086 copying dedalus/tests/test_evp.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-09T00:30:23,088 copying dedalus/tests/test_lbvp.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-09T00:30:23,091 copying dedalus/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-09T00:30:23,092 copying dedalus/tests/test_polar_operators.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-09T00:30:23,095 copying dedalus/tests/test_cylinder_operators.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-09T00:30:23,097 copying dedalus/tests/test_nlbvp.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-09T00:30:23,099 copying dedalus/tests/test_cylinder_ncc.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-09T00:30:23,102 copying dedalus/tests/test_cartesian_operators.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-09T00:30:23,104 copying dedalus/tests/test_transforms.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-09T00:30:23,107 copying dedalus/tests/ball_diffusion_analytical_eigenvalues.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-09T00:30:23,108 copying dedalus/tests/test_cfl.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-09T00:30:23,110 copying dedalus/tests/test_grid_operators.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-09T00:30:23,112 copying dedalus/tests/test_sphere_calculus.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-09T00:30:23,115 copying dedalus/tests/test_spherical_calculus.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-09T00:30:23,117 copying dedalus/tests/test_ivp.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-09T00:30:23,119 copying dedalus/tests/test_jacobi_operators.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-09T00:30:23,121 copying dedalus/tests/test_polar_ncc.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-09T00:30:23,123 copying dedalus/tests/test_fourier_operators.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-09T00:30:23,125 creating build/lib.linux-armv7l-cpython-39/dedalus/extras 2024-01-09T00:30:23,126 copying dedalus/extras/flow_tools.py -> build/lib.linux-armv7l-cpython-39/dedalus/extras 2024-01-09T00:30:23,128 copying dedalus/extras/__init__.py -> build/lib.linux-armv7l-cpython-39/dedalus/extras 2024-01-09T00:30:23,129 copying dedalus/extras/plot_tools.py -> build/lib.linux-armv7l-cpython-39/dedalus/extras 2024-01-09T00:30:23,133 creating build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-09T00:30:23,133 copying dedalus/tools/general.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-09T00:30:23,135 copying dedalus/tools/plot_op.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-09T00:30:23,137 copying dedalus/tools/progress.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-09T00:30:23,139 copying dedalus/tools/logging.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-09T00:30:23,140 copying dedalus/tools/parallel.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-09T00:30:23,142 copying dedalus/tools/parsing.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-09T00:30:23,143 copying dedalus/tools/clenshaw.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-09T00:30:23,145 copying dedalus/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-09T00:30:23,146 copying dedalus/tools/random_arrays.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-09T00:30:23,148 copying dedalus/tools/cache.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-09T00:30:23,150 copying dedalus/tools/config.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-09T00:30:23,152 copying dedalus/tools/dispatch.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-09T00:30:23,153 copying dedalus/tools/post.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-09T00:30:23,155 copying dedalus/tools/jacobi.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-09T00:30:23,158 copying dedalus/tools/exceptions.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-09T00:30:23,159 copying dedalus/tools/array.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-09T00:30:23,163 creating build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-09T00:30:23,163 copying dedalus/libraries/dedalus_sphere/sphere.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-09T00:30:23,166 copying dedalus/libraries/dedalus_sphere/tuple_tools.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-09T00:30:23,167 copying dedalus/libraries/dedalus_sphere/clenshaw.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-09T00:30:23,169 copying dedalus/libraries/dedalus_sphere/sphere_wrapper.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-09T00:30:23,171 copying dedalus/libraries/dedalus_sphere/__init__.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-09T00:30:23,173 copying dedalus/libraries/dedalus_sphere/zernike.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-09T00:30:23,174 copying dedalus/libraries/dedalus_sphere/timesteppers.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-09T00:30:23,176 copying dedalus/libraries/dedalus_sphere/shell.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-09T00:30:23,178 copying dedalus/libraries/dedalus_sphere/old_intertwiner.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-09T00:30:23,180 copying dedalus/libraries/dedalus_sphere/operators.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-09T00:30:23,182 copying dedalus/libraries/dedalus_sphere/spin_operators.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-09T00:30:23,184 copying dedalus/libraries/dedalus_sphere/jacobi.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-09T00:30:23,186 copying dedalus/libraries/dedalus_sphere/ball_wrapper.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-09T00:30:23,189 copying dedalus/libraries/dedalus_sphere/annulus.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-09T00:30:23,191 creating build/lib.linux-armv7l-cpython-39/dedalus/libraries/fftw 2024-01-09T00:30:23,192 copying dedalus/libraries/fftw/__init__.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/fftw 2024-01-09T00:30:23,198 copying dedalus/dedalus.cfg -> build/lib.linux-armv7l-cpython-39/dedalus 2024-01-09T00:30:23,201 copying dedalus/examples.tar.gz -> build/lib.linux-armv7l-cpython-39/dedalus 2024-01-09T00:30:23,209 running build_ext 2024-01-09T00:30:23,215 building 'dedalus.core.transposes' extension 2024-01-09T00:30:23,216 creating build/temp.linux-armv7l-cpython-39 2024-01-09T00:30:23,216 creating build/temp.linux-armv7l-cpython-39/dedalus 2024-01-09T00:30:23,217 creating build/temp.linux-armv7l-cpython-39/dedalus/core 2024-01-09T00:30:23,218 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-ukco0x3s/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-build-env-ukco0x3s/overlay/lib/python3.9/site-packages/mpi4py/include -Idedalus/libraries/fftw/ -I/usr/include/python3.9 -c dedalus/core/transposes.c -o build/temp.linux-armv7l-cpython-39/dedalus/core/transposes.o -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -Wno-unused-function -fopenmp 2024-01-09T00:30:23,612 dedalus/core/transposes.c:1235:10: fatal error: mpi.h: No such file or directory 2024-01-09T00:30:23,612 1235 | #include "mpi.h" 2024-01-09T00:30:23,613 | ^~~~~~~ 2024-01-09T00:30:23,613 compilation terminated. 2024-01-09T00:30:23,620 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2024-01-09T00:30:23,774 ERROR: Building wheel for dedalus (pyproject.toml) exited with 1 2024-01-09T00:30:23,791 [bold magenta]full command[/]: [blue]/usr/bin/python3 /home/piwheels/.local/lib/python3.9/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmpxy2vgv8y[/] 2024-01-09T00:30:23,791 [bold magenta]cwd[/]: /tmp/pip-wheel-gc3_ue0m/dedalus_fa8d90eafd154f5a837450c4c50796b0 2024-01-09T00:30:23,791 Building wheel for dedalus (pyproject.toml): finished with status 'error' 2024-01-09T00:30:23,793 ERROR: Failed building wheel for dedalus 2024-01-09T00:30:23,796 Failed to build dedalus 2024-01-09T00:30:23,797 ERROR: Failed to build one or more wheels 2024-01-09T00:30:23,798 Exception information: 2024-01-09T00:30:23,798 Traceback (most recent call last): 2024-01-09T00:30:23,798 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2024-01-09T00:30:23,798 status = run_func(*args) 2024-01-09T00:30:23,798 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 245, in wrapper 2024-01-09T00:30:23,798 return func(self, options, args) 2024-01-09T00:30:23,798 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 181, in run 2024-01-09T00:30:23,798 raise CommandError("Failed to build one or more wheels") 2024-01-09T00:30:23,798 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2024-01-09T00:30:23,800 Removed build tracker: '/tmp/pip-build-tracker-b0bnvzgi'