2024-01-09T12:25:31,069 Created temporary directory: /tmp/pip-build-tracker-gqev8761
2024-01-09T12:25:31,070 Initialized build tracking at /tmp/pip-build-tracker-gqev8761
2024-01-09T12:25:31,071 Created build tracker: /tmp/pip-build-tracker-gqev8761
2024-01-09T12:25:31,071 Entered build tracker: /tmp/pip-build-tracker-gqev8761
2024-01-09T12:25:31,072 Created temporary directory: /tmp/pip-wheel-zpp24vqy
2024-01-09T12:25:31,075 Created temporary directory: /tmp/pip-ephem-wheel-cache-qbtu0ast
2024-01-09T12:25:31,097 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-01-09T12:25:31,101 2 location(s) to search for versions of moleculekit:
2024-01-09T12:25:31,101 * https://pypi.org/simple/moleculekit/
2024-01-09T12:25:31,101 * https://www.piwheels.org/simple/moleculekit/
2024-01-09T12:25:31,101 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2024-01-09T12:25:31,102 Getting page https://pypi.org/simple/moleculekit/
2024-01-09T12:25:31,103 Found index url https://pypi.org/simple/
2024-01-09T12:25:31,330 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2024-01-09T12:25:31,368   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-09T12:25:31,369   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2024-01-09T12:25:31,370   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-09T12:25:31,371   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2024-01-09T12:25:31,371   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-09T12:25:31,372   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2024-01-09T12:25:31,373   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-09T12:25:31,373   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2024-01-09T12:25:31,374   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-09T12:25:31,375   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2024-01-09T12:25:31,375   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-09T12:25:31,376   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2024-01-09T12:25:31,377   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-09T12:25:31,378   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2024-01-09T12:25:31,378   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-09T12:25:31,379   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2024-01-09T12:25:31,379   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-09T12:25:31,380   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2024-01-09T12:25:31,380   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-09T12:25:31,381   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2024-01-09T12:25:31,382   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-09T12:25:31,382   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2024-01-09T12:25:31,383   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-09T12:25:31,384   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2024-01-09T12:25:31,385   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-09T12:25:31,385   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2024-01-09T12:25:31,386   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-09T12:25:31,386   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2024-01-09T12:25:31,387   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-09T12:25:31,388   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2024-01-09T12:25:31,389   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-09T12:25:31,389   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2024-01-09T12:25:31,390   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-09T12:25:31,390   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2024-01-09T12:25:31,391   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-09T12:25:31,392   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2024-01-09T12:25:31,392   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-09T12:25:31,393   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2024-01-09T12:25:31,394   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-09T12:25:31,394   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2024-01-09T12:25:31,395   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-09T12:25:31,396   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2024-01-09T12:25:31,397   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-09T12:25:31,397   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2024-01-09T12:25:31,398   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-09T12:25:31,399   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2024-01-09T12:25:31,400   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-09T12:25:31,400   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2024-01-09T12:25:31,401   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-09T12:25:31,401   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2024-01-09T12:25:31,402   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-09T12:25:31,402   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2024-01-09T12:25:31,403   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-09T12:25:31,403   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2024-01-09T12:25:31,404   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-09T12:25:31,405   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2024-01-09T12:25:31,405   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-09T12:25:31,406   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2024-01-09T12:25:31,407   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-09T12:25:31,407   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2024-01-09T12:25:31,408   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-09T12:25:31,409   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2024-01-09T12:25:31,409   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-09T12:25:31,410   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2024-01-09T12:25:31,411   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2024-01-09T12:25:31,476   Found link https://files.pythonhosted.org/packages/eb/2e/c50f42aefc5f3510073bd5059723baff738a5ee171174441586000c444dc/moleculekit-1.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.8
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2024-01-09T12:25:31,478   Found link https://files.pythonhosted.org/packages/06/90/69685dad023515e231d8da7747793f33c497bb62496c4075e518f230da55/moleculekit-1.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.0
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2024-01-09T12:25:31,483   Found link https://files.pythonhosted.org/packages/29/f1/10cd916b3024b2efe08c06413dff5938859e01c8bc671cde8bf070758031/moleculekit-1.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.8
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2024-01-09T12:25:31,484   Found link https://files.pythonhosted.org/packages/2e/1c/a07b4d5f471fc90ba12e88e44675ddbf0ba4b0a658c2fc014491a7a27092/moleculekit-1.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.0
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2024-01-09T12:25:31,514   Found link https://files.pythonhosted.org/packages/4e/3a/29fb1aa0e3792fef88348885348370f39af453fb75d5505a208068d1c4ac/moleculekit-1.7.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.1
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2024-01-09T12:25:31,516   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2024-01-09T12:25:31,517   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2024-01-09T12:25:31,518   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2024-01-09T12:25:31,519   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2024-01-09T12:25:31,520   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2024-01-09T12:25:31,521   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2024-01-09T12:25:31,522   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2024-01-09T12:25:31,523   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2024-01-09T12:25:31,524   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2024-01-09T12:25:31,525   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2024-01-09T12:25:31,526   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2024-01-09T12:25:31,526   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2024-01-09T12:25:31,527   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2024-01-09T12:25:31,528   Found link https://files.pythonhosted.org/packages/96/a3/11b655506ce842ebea0b6d4c86883a538095687cb7bc9c4a179420971bd7/moleculekit-1.8.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.1
2024-01-09T12:25:31,529   Found link https://files.pythonhosted.org/packages/9d/d3/ead35117c0f3b3b1be847d561ff31bf59dfde0c49982bff106a3cc3876f0/moleculekit-1.8.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.2
2024-01-09T12:25:31,530   Found link https://files.pythonhosted.org/packages/23/e8/3ebe2bfb667296b1c79d4e59fdfb487116bfd8bec579ca242eec7ecad0c2/moleculekit-1.8.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.3
2024-01-09T12:25:31,531   Found link https://files.pythonhosted.org/packages/6f/4d/4a0e90a65d79829ae0bec8d857de2f8b7e18b6d60e05daa99cdbed0061c0/moleculekit-1.8.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.4
2024-01-09T12:25:31,532   Found link https://files.pythonhosted.org/packages/15/bb/f88884d7710aeb6290c69f180df912ce73beb4975ceea9f58aa28250737c/moleculekit-1.8.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.5
2024-01-09T12:25:31,533   Found link https://files.pythonhosted.org/packages/e4/a8/ef9f25e6e42436ceaecfd8bb0aadbf40855976374a46b8cf8d55000fa0a8/moleculekit-1.8.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.6
2024-01-09T12:25:31,534   Found link https://files.pythonhosted.org/packages/67/c5/ed682f5ea9a16915b98612e0b274b50303bb912ccb71ab106247e01be8c2/moleculekit-1.8.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.7
2024-01-09T12:25:31,535   Found link https://files.pythonhosted.org/packages/23/cd/efd06d75f4a0e866e23156ca3c771c99a22bcfb5f2d1b0f42f853b9cfd27/moleculekit-1.8.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.10
2024-01-09T12:25:31,536   Found link https://files.pythonhosted.org/packages/d2/1a/935247798d3097c5093e33b026729b2e218fefd40f58c4b8b8bd3fcf93b4/moleculekit-1.8.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.13
2024-01-09T12:25:31,537   Found link https://files.pythonhosted.org/packages/b0/1c/de17759f3cbae5b6b06b60242724a93570b332f657fdeff9e582b6bda391/moleculekit-1.8.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.14
2024-01-09T12:25:31,538   Found link https://files.pythonhosted.org/packages/20/a3/7476dceb769dd7bb318d84590a372f1974e978cefb204da16f2b4d99a34e/moleculekit-1.8.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.15
2024-01-09T12:25:31,539   Found link https://files.pythonhosted.org/packages/ce/8d/e060616d8e4e03f56d544939f3ccea7f3d665038a66bbf57ba0bcd1f4711/moleculekit-1.8.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.17
2024-01-09T12:25:31,540   Found link https://files.pythonhosted.org/packages/36/66/5b4a8da5461b4547e9b3e58f477ddf359701865a7e2ca5b0348fa20f54ae/moleculekit-1.8.18.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.18
2024-01-09T12:25:31,541 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2024-01-09T12:25:31,541 Getting page https://www.piwheels.org/simple/moleculekit/
2024-01-09T12:25:31,543 Found index url https://www.piwheels.org/simple/
2024-01-09T12:25:31,710 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
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2024-01-09T12:25:31,788   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.14-cp311-cp311-linux_armv6l.whl#sha256=8629ac0797c90996eccc556595395a73f694a991add5f87b742e90afa9657440 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-01-09T12:25:31,869   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.14-cp37-cp37m-linux_armv6l.whl#sha256=5bc2de8230ca38d840e6f86860f469828a1720a95c76726db1ecb07a8af6de91 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,869   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.14-cp37-cp37m-linux_armv7l.whl#sha256=5bc2de8230ca38d840e6f86860f469828a1720a95c76726db1ecb07a8af6de91 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,870   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.14-cp39-cp39-linux_armv6l.whl#sha256=9462e9f87eb4aec5ac63c9df15de09cdce7d94fe44a0708d7ee525e983ff1830 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,871   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.14-cp39-cp39-linux_armv7l.whl#sha256=9462e9f87eb4aec5ac63c9df15de09cdce7d94fe44a0708d7ee525e983ff1830 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,871   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp37-cp37m-linux_armv6l.whl#sha256=ef137737db23a1f54c74776c99ac718685db863975d888a3e219900b5874fe45 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,872   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp37-cp37m-linux_armv7l.whl#sha256=ef137737db23a1f54c74776c99ac718685db863975d888a3e219900b5874fe45 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,873   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp39-cp39-linux_armv6l.whl#sha256=413233b9ea619a276a0cc4911cee59417c2be694ab30c5c5c836a31391e5b6c4 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,873   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp39-cp39-linux_armv7l.whl#sha256=413233b9ea619a276a0cc4911cee59417c2be694ab30c5c5c836a31391e5b6c4 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,874   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp37-cp37m-linux_armv6l.whl#sha256=a871d3b206f986ddc16b14a1e59904384aea1d6936948be45d6d3d05211637c4 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,875   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp37-cp37m-linux_armv7l.whl#sha256=a871d3b206f986ddc16b14a1e59904384aea1d6936948be45d6d3d05211637c4 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,875   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp39-cp39-linux_armv6l.whl#sha256=d75d99aa397ece4f4d163fff8e78e6868ccbab4190016befc567c5f08d1cbbd4 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,876   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp39-cp39-linux_armv7l.whl#sha256=d75d99aa397ece4f4d163fff8e78e6868ccbab4190016befc567c5f08d1cbbd4 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,876   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv6l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,877   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv7l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,877   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv6l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,878   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv7l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,878   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv6l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,879   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv7l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,880   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv6l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,880   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv7l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,881   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,882   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv7l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,883   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv6l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,883   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,883   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,884   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,884   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,885   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,885   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,886   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,887   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,888   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,888   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,889   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,889   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,890   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,891   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,891   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,892   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,892   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,893   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,893   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,894   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,894   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,895   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,896   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,896   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,897   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,898   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,898   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,899   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,900   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,900   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,900   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,901   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,901   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,902   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,903   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,903   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,904   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,905   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,905   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,906   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,907   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,907   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,907   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,908   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,908   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,909   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,909   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,910   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,911   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,911   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv6l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,912   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,913   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,913   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,914   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv6l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,915   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv7l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,915   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv6l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,916   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv7l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,916   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv6l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,917   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv7l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,917   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv6l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,918   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv7l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,918   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv6l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,919   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv7l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,920   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv6l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,920   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv7l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,921   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv6l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,922   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv7l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,922   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv6l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,923   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv7l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,924   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv6l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,924   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv7l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,925   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv6l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,925   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv7l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,926   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv6l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,926   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv7l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,927   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv6l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,927   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv7l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,928   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv6l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,929   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv7l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,929   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv6l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,930   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv7l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,930   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv6l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,931   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv7l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,932   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv6l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,932   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv7l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,933   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv6l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,933   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv7l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,934   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.4-py3-none-any.whl#sha256=9ea33917985ebf7bdfdbb276c83c4b2b1be17adbefb6062cc28c7ac037e3fab8 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,934   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.3-py3-none-any.whl#sha256=60b48ad38d8567be173c2a4a384dd7d742cf0b9f80eac5510c5987a9e1b668b6 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,935   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.2-py3-none-any.whl#sha256=89c944d279cde5c1d1ea898c4495e8076b1a1c477f1594f024110adcb137070e (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,935   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.8-py3-none-any.whl#sha256=9f728761688514ebb5e7fbd00f93960d862d928411f697f3beaf5c05b55bcd29 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,936   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.7-py3-none-any.whl#sha256=0167204d0c1ad4269753d9981920d6d47d0936fa85f5a709716abe11f2f63924 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,937   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.6-py3-none-any.whl#sha256=aa0c660454f157d45a5709a2fe3ec7e6c79af7be1dc5866ab3497475f2197d8d (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,937   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.4-py3-none-any.whl#sha256=328348766e2960fdf270fdf395fcb1b60acc7f8741927b76535453e8f3731f03 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,938   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.3-py3-none-any.whl#sha256=cd086bf69fafb879119d434964d0fd0920aa414c2b72fd29628920d6b5615e44 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,939   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.4-py3-none-any.whl#sha256=a5284594c607376665fb0592efa0f7696a9d1b437641b385a939bb6e171e5b58 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,939   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.3-py3-none-any.whl#sha256=c7787bffc57340080dbc84bbc30cf3adbec8c10947b34a038b821fd98f93e138 (from https://www.piwheels.org/simple/moleculekit/)
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2024-01-09T12:25:31,942   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.9-py3-none-any.whl#sha256=76a22c44b710351a9d3c94d7e7c1d96c61e90251004b2a34cdcc92280d423a09 (from https://www.piwheels.org/simple/moleculekit/)
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2024-01-09T12:25:31,949   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.30-py3-none-any.whl#sha256=891f8d9b242d2964c64a6142804f2c8951d94829491c38a737abb1ca8635bc09 (from https://www.piwheels.org/simple/moleculekit/)
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2024-01-09T12:25:31,950   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.27-py3-none-any.whl#sha256=fc3413a0265ea20a77f4167b72a3c80b8b45f7338a57d1f999fba81a45110a38 (from https://www.piwheels.org/simple/moleculekit/)
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2024-01-09T12:25:31,951   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.24-py3-none-any.whl#sha256=13d00e3b7c8c41bc82131fa7f6df5c575b3ed0efc89b715f8ee35bb68dbe1b68 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,951   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.23-py3-none-any.whl#sha256=a174c23806ee69677ad74cd6376e8a22f000abcd5817ae7bd67ec2639d750a72 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,952   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.22-py3-none-any.whl#sha256=4bdcc64f301cdd7a24c6f2b0d515152bbde40124568d72b2046003aba6d7d34c (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,953   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.21-py3-none-any.whl#sha256=3f591427a4c43521256cd46422de7c64268ec392e356b7ff3dbb8c0bc5e0c686 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,953   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.19-py3-none-any.whl#sha256=1005a5a682737b1ba3f4858ca3919c129caae8d962bf750308e4cf6e7d37e215 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,954   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.17-py3-none-any.whl#sha256=cd99998c6c3ee48df7148cec7161f3696beede842d4e93bb9da19fa9e2c6c459 (from https://www.piwheels.org/simple/moleculekit/)
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2024-01-09T12:25:31,955   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.15-py3-none-any.whl#sha256=4db5d8b5350b36ce41d225c471f0fdd64f708826935ac50675fb278c00275339 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,956   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.14-py3-none-any.whl#sha256=051435884ce3f924fc9ba4dcb342a0d0ac85ff52bda6e656389f9a6f7eefec84 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,957   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.12-py3-none-any.whl#sha256=8d96fbe0cf32ec0d217201a2f3274aedc42fb18f06b218394d4be0bfee25181a (from https://www.piwheels.org/simple/moleculekit/)
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2024-01-09T12:25:31,957   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.8-py3-none-any.whl#sha256=716d25ae18a4a9a3c8cfb1f0b0399f72463490e4f85a66631f3e77c0ddc427e3 (from https://www.piwheels.org/simple/moleculekit/)
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2024-01-09T12:25:31,959   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.4-py3-none-any.whl#sha256=5784491ff294e145a00311f8239aaa0b92c12605db0508ee3e10469b80d4cadd (from https://www.piwheels.org/simple/moleculekit/)
2024-01-09T12:25:31,960 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2024-01-09T12:25:31,961 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2024-01-09T12:25:32,002 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2024-01-09T12:25:32,021 Collecting moleculekit==1.8.18
2024-01-09T12:25:32,023   Created temporary directory: /tmp/pip-unpack-kcqf0c8y
2024-01-09T12:25:32,247   Downloading moleculekit-1.8.18.tar.gz (6.7 MB)
2024-01-09T12:25:34,985   Added moleculekit==1.8.18 from https://files.pythonhosted.org/packages/36/66/5b4a8da5461b4547e9b3e58f477ddf359701865a7e2ca5b0348fa20f54ae/moleculekit-1.8.18.tar.gz to build tracker '/tmp/pip-build-tracker-gqev8761'
2024-01-09T12:25:34,994   Created temporary directory: /tmp/pip-build-env-9hwhr2lb
2024-01-09T12:25:34,998   Installing build dependencies: started
2024-01-09T12:25:35,000   Running command pip subprocess to install build dependencies
2024-01-09T12:25:36,183   Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2024-01-09T12:25:36,692   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-01-09T12:25:38,104   Collecting setuptools
2024-01-09T12:25:38,125     Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.0.3-py3-none-any.whl (819 kB)
2024-01-09T12:25:38,716     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2024-01-09T12:25:38,720     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2024-01-09T12:25:38,723     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2024-01-09T12:25:38,726     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2024-01-09T12:25:38,730     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2024-01-09T12:25:39,005   Collecting numpy>=1.18.5
2024-01-09T12:25:39,026     Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.3-cp311-cp311-linux_armv7l.whl (19.5 MB)
2024-01-09T12:25:40,675   Collecting Cython>=0.29.21
2024-01-09T12:25:40,689     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.7-cp311-cp311-linux_armv7l.whl (11.7 MB)
2024-01-09T12:25:41,095   Collecting toml
2024-01-09T12:25:41,122     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2024-01-09T12:25:41,224   Collecting versioneer==0.28 (from versioneer[toml]==0.28)
2024-01-09T12:25:41,242     Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2024-01-09T12:25:43,915   Installing collected packages: versioneer, toml, setuptools, numpy, Cython
2024-01-09T12:25:43,946     Creating /tmp/pip-build-env-9hwhr2lb/overlay/local/bin
2024-01-09T12:25:43,948     changing mode of /tmp/pip-build-env-9hwhr2lb/overlay/local/bin/versioneer to 755
2024-01-09T12:25:54,170     changing mode of /tmp/pip-build-env-9hwhr2lb/overlay/local/bin/f2py to 755
2024-01-09T12:25:58,202     changing mode of /tmp/pip-build-env-9hwhr2lb/overlay/local/bin/cygdb to 755
2024-01-09T12:25:58,210     changing mode of /tmp/pip-build-env-9hwhr2lb/overlay/local/bin/cython to 755
2024-01-09T12:25:58,213     changing mode of /tmp/pip-build-env-9hwhr2lb/overlay/local/bin/cythonize to 755
2024-01-09T12:25:58,265   Successfully installed Cython-3.0.7 numpy-1.26.3 setuptools-69.0.3 toml-0.10.2 versioneer-0.28

2024-01-09T12:25:59,473   [notice] A new release of pip is available: 23.3.1 -> 23.3.2
2024-01-09T12:25:59,474   [notice] To update, run: python3 -m pip install --upgrade pip
2024-01-09T12:25:59,917   Installing build dependencies: finished with status 'done'
2024-01-09T12:25:59,921   Getting requirements to build wheel: started
2024-01-09T12:25:59,922   Running command Getting requirements to build wheel
2024-01-09T12:26:31,766   warning: moleculekit/wrapping/wrapping.pyx:47:4: Unreachable code
2024-01-09T12:26:40,193   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-01-09T12:26:40,193   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-01-09T12:26:40,194   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-01-09T12:26:40,195   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-01-09T12:26:40,195   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-01-09T12:26:40,196   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-01-09T12:26:40,196   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-01-09T12:26:40,197   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-01-09T12:26:40,198   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-01-09T12:26:40,198   Compiling moleculekit/fileformats/xtc/xtc.pyx because it depends on /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2024-01-09T12:26:40,198   Compiling moleculekit/fileformats/xtc/trr.pyx because it depends on /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2024-01-09T12:26:40,199   Compiling moleculekit/fileformats/dcd/dcd.pyx because it depends on /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2024-01-09T12:26:40,199   Compiling moleculekit/fileformats/binpos/binpos.pyx because it depends on /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2024-01-09T12:26:40,200   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-01-09T12:26:40,200   [ 1/14] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
2024-01-09T12:26:40,201   [ 2/14] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx
2024-01-09T12:26:40,202   [ 3/14] Cythonizing moleculekit/distance_utils/distance_utils.pyx
2024-01-09T12:26:40,202   [ 4/14] Cythonizing moleculekit/fileformats/dcd/dcd.pyx
2024-01-09T12:26:40,203   [ 5/14] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx
2024-01-09T12:26:40,203   [ 6/14] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx
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2024-01-09T12:26:40,479   running egg_info
2024-01-09T12:26:40,485   writing moleculekit.egg-info/PKG-INFO
2024-01-09T12:26:40,489   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-01-09T12:26:40,492   writing requirements to moleculekit.egg-info/requires.txt
2024-01-09T12:26:40,493   writing top-level names to moleculekit.egg-info/top_level.txt
2024-01-09T12:26:40,523   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,524   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,524   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,525   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,526   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,527   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,527   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,527   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,528   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,528   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,529   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,530   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,530   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,531   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,531   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,532   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,532   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,533   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,533   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,534   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,535   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,535   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,536   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,537   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,537   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,538   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,538   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,539   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,539   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,540   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,540   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,541   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,541   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,542   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,542   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,543   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,543   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,544   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,544   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,545   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,545   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,546   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,546   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,547   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,548   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,548   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,549   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,549   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,550   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,550   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,551   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,552   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,552   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,553   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,554   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,554   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,555   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,555   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,556   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,556   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,557   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,557   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,558   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,558   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,559   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,559   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,560   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,560   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,561   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,561   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:40,562   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-01-09T12:26:40,589   reading manifest template 'MANIFEST.in'
2024-01-09T12:26:40,848   no previously-included directories found matching 'moleculekit/test-data'
2024-01-09T12:26:40,849   no previously-included directories found matching 'moleculekit/tests'
2024-01-09T12:26:40,850   no previously-included directories found matching 'package'
2024-01-09T12:26:40,850   adding license file 'LICENSE'
2024-01-09T12:26:40,866   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-01-09T12:26:42,158   Getting requirements to build wheel: finished with status 'done'
2024-01-09T12:26:42,172   Installing backend dependencies: started
2024-01-09T12:26:42,174   Running command pip subprocess to install backend dependencies
2024-01-09T12:26:43,385   Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2024-01-09T12:26:43,932   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-01-09T12:26:44,413   Collecting wheel
2024-01-09T12:26:44,428     Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB)
2024-01-09T12:26:46,671   Installing collected packages: wheel
2024-01-09T12:26:46,896     Creating /tmp/pip-build-env-9hwhr2lb/normal/local/bin
2024-01-09T12:26:46,898     changing mode of /tmp/pip-build-env-9hwhr2lb/normal/local/bin/wheel to 755
2024-01-09T12:26:46,910   Successfully installed wheel-0.42.0

2024-01-09T12:26:47,193   [notice] A new release of pip is available: 23.3.1 -> 23.3.2
2024-01-09T12:26:47,193   [notice] To update, run: python3 -m pip install --upgrade pip
2024-01-09T12:26:47,422   Installing backend dependencies: finished with status 'done'
2024-01-09T12:26:47,423   Created temporary directory: /tmp/pip-modern-metadata-jpsavf2f
2024-01-09T12:26:47,426   Preparing metadata (pyproject.toml): started
2024-01-09T12:26:47,427   Running command Preparing metadata (pyproject.toml)
2024-01-09T12:26:49,797   running dist_info
2024-01-09T12:26:49,798   creating /tmp/pip-modern-metadata-jpsavf2f/moleculekit.egg-info
2024-01-09T12:26:49,804   writing /tmp/pip-modern-metadata-jpsavf2f/moleculekit.egg-info/PKG-INFO
2024-01-09T12:26:49,810   writing dependency_links to /tmp/pip-modern-metadata-jpsavf2f/moleculekit.egg-info/dependency_links.txt
2024-01-09T12:26:49,812   writing requirements to /tmp/pip-modern-metadata-jpsavf2f/moleculekit.egg-info/requires.txt
2024-01-09T12:26:49,813   writing top-level names to /tmp/pip-modern-metadata-jpsavf2f/moleculekit.egg-info/top_level.txt
2024-01-09T12:26:49,814   writing manifest file '/tmp/pip-modern-metadata-jpsavf2f/moleculekit.egg-info/SOURCES.txt'
2024-01-09T12:26:49,843   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,844   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,844   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,845   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,845   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,846   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,847   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,847   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,848   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,848   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,849   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,849   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,850   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,851   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,852   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,852   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,853   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,853   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,853   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,854   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,855   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,855   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,856   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,856   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,857   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,857   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,858   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,858   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,859   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,859   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,860   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,861   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,862   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,863   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,863   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,863   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,864   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,864   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,865   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,866   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,866   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,867   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,867   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,868   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,868   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,869   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,869   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,870   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,870   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,871   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,871   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,872   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,872   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,873   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,873   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,874   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,874   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,875   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,875   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,876   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,876   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,876   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,877   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,877   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,878   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,878   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,879   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,879   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,880   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,881   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:49,881   reading manifest file '/tmp/pip-modern-metadata-jpsavf2f/moleculekit.egg-info/SOURCES.txt'
2024-01-09T12:26:49,881   reading manifest template 'MANIFEST.in'
2024-01-09T12:26:50,142   no previously-included directories found matching 'moleculekit/test-data'
2024-01-09T12:26:50,143   no previously-included directories found matching 'moleculekit/tests'
2024-01-09T12:26:50,144   no previously-included directories found matching 'package'
2024-01-09T12:26:50,145   adding license file 'LICENSE'
2024-01-09T12:26:50,156   writing manifest file '/tmp/pip-modern-metadata-jpsavf2f/moleculekit.egg-info/SOURCES.txt'
2024-01-09T12:26:50,164   creating '/tmp/pip-modern-metadata-jpsavf2f/moleculekit-1.8.18.dist-info'
2024-01-09T12:26:50,396   Preparing metadata (pyproject.toml): finished with status 'done'
2024-01-09T12:26:50,401   Source in /tmp/pip-wheel-zpp24vqy/moleculekit_eba8e37c67804d95bf019187d4f256d6 has version 1.8.18, which satisfies requirement moleculekit==1.8.18 from https://files.pythonhosted.org/packages/36/66/5b4a8da5461b4547e9b3e58f477ddf359701865a7e2ca5b0348fa20f54ae/moleculekit-1.8.18.tar.gz
2024-01-09T12:26:50,402   Removed moleculekit==1.8.18 from https://files.pythonhosted.org/packages/36/66/5b4a8da5461b4547e9b3e58f477ddf359701865a7e2ca5b0348fa20f54ae/moleculekit-1.8.18.tar.gz from build tracker '/tmp/pip-build-tracker-gqev8761'
2024-01-09T12:26:50,408 Created temporary directory: /tmp/pip-unpack-fjv2woz8
2024-01-09T12:26:50,409 Created temporary directory: /tmp/pip-unpack-8t0yfd_b
2024-01-09T12:26:50,417 Building wheels for collected packages: moleculekit
2024-01-09T12:26:50,422   Created temporary directory: /tmp/pip-wheel-rtbhaf1y
2024-01-09T12:26:50,422   Destination directory: /tmp/pip-wheel-rtbhaf1y
2024-01-09T12:26:50,425   Building wheel for moleculekit (pyproject.toml): started
2024-01-09T12:26:50,426   Running command Building wheel for moleculekit (pyproject.toml)
2024-01-09T12:26:52,655   running bdist_wheel
2024-01-09T12:26:52,670   running build
2024-01-09T12:26:52,671   running build_py
2024-01-09T12:26:52,677   creating build
2024-01-09T12:26:52,678   creating build/lib.linux-armv7l-cpython-311
2024-01-09T12:26:52,678   creating build/lib.linux-armv7l-cpython-311/moleculekit
2024-01-09T12:26:52,680   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-01-09T12:26:52,682   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-01-09T12:26:52,684   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-01-09T12:26:52,686   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-01-09T12:26:52,689   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-01-09T12:26:52,691   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-01-09T12:26:52,693   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-01-09T12:26:52,695   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-01-09T12:26:52,698   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-01-09T12:26:52,699   copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-01-09T12:26:52,701   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-01-09T12:26:52,704   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-01-09T12:26:52,706   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-01-09T12:26:52,708   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-01-09T12:26:52,710   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-01-09T12:26:52,712   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-01-09T12:26:52,715   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-01-09T12:26:52,717   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-01-09T12:26:52,719   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-01-09T12:26:52,721   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-01-09T12:26:52,724   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-01-09T12:26:52,729   creating build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
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2024-01-09T12:26:52,732   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2024-01-09T12:26:52,734   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2024-01-09T12:26:52,736   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2024-01-09T12:26:52,740   creating build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-01-09T12:26:52,740   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-01-09T12:26:52,743   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-01-09T12:26:52,745   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-01-09T12:26:52,748   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-01-09T12:26:52,750   copying moleculekit/tools/modelling.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-01-09T12:26:52,752   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-01-09T12:26:52,755   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-01-09T12:26:52,757   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-01-09T12:26:52,759   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-01-09T12:26:52,762   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-01-09T12:26:52,764   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-01-09T12:26:52,766   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-01-09T12:26:52,769   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-01-09T12:26:52,771   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-01-09T12:26:52,775   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx
2024-01-09T12:26:52,776   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx
2024-01-09T12:26:52,780   creating build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-01-09T12:26:52,780   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-01-09T12:26:52,783   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-01-09T12:26:52,786   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-01-09T12:26:52,788   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-01-09T12:26:52,791   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-01-09T12:26:52,793   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-01-09T12:26:52,796   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-01-09T12:26:52,798   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-01-09T12:26:52,800   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-01-09T12:26:52,802   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-01-09T12:26:52,804   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-01-09T12:26:52,806   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-01-09T12:26:52,808   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-01-09T12:26:52,810   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-01-09T12:26:52,813   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-01-09T12:26:52,815   creating build/lib.linux-armv7l-cpython-311/moleculekit/ply
2024-01-09T12:26:52,816   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2024-01-09T12:26:52,819   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2024-01-09T12:26:52,821   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2024-01-09T12:26:52,826   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats
2024-01-09T12:26:52,827   copying moleculekit/fileformats/netcdf.py -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats
2024-01-09T12:26:52,830   copying moleculekit/fileformats/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats
2024-01-09T12:26:52,831   copying moleculekit/fileformats/utils.py -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats
2024-01-09T12:26:52,834   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2024-01-09T12:26:52,835   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2024-01-09T12:26:52,838   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2024-01-09T12:26:52,840   creating build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-01-09T12:26:52,841   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-01-09T12:26:52,844   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-01-09T12:26:52,847   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-01-09T12:26:52,849   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-01-09T12:26:52,851   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-01-09T12:26:52,853   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-01-09T12:26:52,856   creating build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2024-01-09T12:26:52,857   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2024-01-09T12:26:52,859   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2024-01-09T12:26:52,862   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-01-09T12:26:52,863   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-01-09T12:26:52,865   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-01-09T12:26:52,866   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-01-09T12:26:52,868   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-01-09T12:26:52,871   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-01-09T12:26:52,872   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-01-09T12:26:52,875   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-01-09T12:26:52,877   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-01-09T12:26:52,880   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-01-09T12:26:52,882   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2024-01-09T12:26:52,883   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2024-01-09T12:26:52,884   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2024-01-09T12:26:52,887   creating build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-01-09T12:26:52,888   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-01-09T12:26:52,890   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-01-09T12:26:52,892   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-01-09T12:26:52,894   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-01-09T12:26:52,897   running egg_info
2024-01-09T12:26:52,902   writing moleculekit.egg-info/PKG-INFO
2024-01-09T12:26:52,905   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-01-09T12:26:52,906   writing requirements to moleculekit.egg-info/requires.txt
2024-01-09T12:26:52,907   writing top-level names to moleculekit.egg-info/top_level.txt
2024-01-09T12:26:52,925   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,925   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,926   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,927   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,927   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,928   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,928   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,929   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,930   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,930   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,931   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,931   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,932   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,932   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,933   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,933   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,934   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,934   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,935   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,935   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,936   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,937   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,937   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,938   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,939   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,939   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,940   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,941   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,941   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,942   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,942   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,943   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,943   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,944   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,944   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,945   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,945   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,946   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,947   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,947   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,948   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,948   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,949   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,950   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,950   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,951   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,951   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,952   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,952   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,952   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,953   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,953   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,954   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,954   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,955   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,956   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,956   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,957   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,958   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,958   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,959   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,959   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,960   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,961   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,961   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,962   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,962   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,962   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,963   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,963   dependency /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-09T12:26:52,964   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-01-09T12:26:52,964   reading manifest template 'MANIFEST.in'
2024-01-09T12:26:53,221   no previously-included directories found matching 'moleculekit/test-data'
2024-01-09T12:26:53,223   no previously-included directories found matching 'moleculekit/tests'
2024-01-09T12:26:53,224   no previously-included directories found matching 'package'
2024-01-09T12:26:53,224   adding license file 'LICENSE'
2024-01-09T12:26:53,239   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-01-09T12:26:53,248   /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2024-01-09T12:26:53,248   !!

2024-01-09T12:26:53,250           ********************************************************************************
2024-01-09T12:26:53,250           ############################
2024-01-09T12:26:53,251           # Package would be ignored #
2024-01-09T12:26:53,251           ############################
2024-01-09T12:26:53,252           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2024-01-09T12:26:53,252           but it is absent from setuptools' `packages` configuration.

2024-01-09T12:26:53,253           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-09T12:26:53,254           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2024-01-09T12:26:53,255           to the `packages` configuration field.

2024-01-09T12:26:53,256           Alternatively, you can also rely on setuptools' discovery methods
2024-01-09T12:26:53,256           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-09T12:26:53,257           instead of `find_packages(...)`/`find:`).

2024-01-09T12:26:53,258           You can read more about "package discovery" on setuptools documentation page:

2024-01-09T12:26:53,259           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-09T12:26:53,260           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2024-01-09T12:26:53,261           already explicitly excluding 'moleculekit.atomselect_utils' via
2024-01-09T12:26:53,262           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-09T12:26:53,262           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-09T12:26:53,263           combination with a more fine grained `package-data` configuration.

2024-01-09T12:26:53,263           You can read more about "package data files" on setuptools documentation page:

2024-01-09T12:26:53,264           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-09T12:26:53,265           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-09T12:26:53,266                 even if it does not contain any `.py` files.
2024-01-09T12:26:53,266                 On the other hand, currently there is no concept of package data
2024-01-09T12:26:53,267                 directory, all directories are treated like packages.
2024-01-09T12:26:53,267           ********************************************************************************

2024-01-09T12:26:53,268   !!
2024-01-09T12:26:53,268     check.warn(importable)
2024-01-09T12:26:53,269   /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2024-01-09T12:26:53,269   !!

2024-01-09T12:26:53,270           ********************************************************************************
2024-01-09T12:26:53,271           ############################
2024-01-09T12:26:53,271           # Package would be ignored #
2024-01-09T12:26:53,272           ############################
2024-01-09T12:26:53,272           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2024-01-09T12:26:53,273           but it is absent from setuptools' `packages` configuration.

2024-01-09T12:26:53,274           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-09T12:26:53,274           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2024-01-09T12:26:53,275           to the `packages` configuration field.

2024-01-09T12:26:53,276           Alternatively, you can also rely on setuptools' discovery methods
2024-01-09T12:26:53,277           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-09T12:26:53,277           instead of `find_packages(...)`/`find:`).

2024-01-09T12:26:53,278           You can read more about "package discovery" on setuptools documentation page:

2024-01-09T12:26:53,279           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-09T12:26:53,281           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2024-01-09T12:26:53,281           already explicitly excluding 'moleculekit.bondguesser_utils' via
2024-01-09T12:26:53,282           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-09T12:26:53,282           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-09T12:26:53,283           combination with a more fine grained `package-data` configuration.

2024-01-09T12:26:53,284           You can read more about "package data files" on setuptools documentation page:

2024-01-09T12:26:53,285           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-09T12:26:53,286           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-09T12:26:53,287                 even if it does not contain any `.py` files.
2024-01-09T12:26:53,287                 On the other hand, currently there is no concept of package data
2024-01-09T12:26:53,288                 directory, all directories are treated like packages.
2024-01-09T12:26:53,289           ********************************************************************************

2024-01-09T12:26:53,290   !!
2024-01-09T12:26:53,291     check.warn(importable)
2024-01-09T12:26:53,291   /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2024-01-09T12:26:53,291   !!

2024-01-09T12:26:53,292           ********************************************************************************
2024-01-09T12:26:53,292           ############################
2024-01-09T12:26:53,293           # Package would be ignored #
2024-01-09T12:26:53,293           ############################
2024-01-09T12:26:53,294           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2024-01-09T12:26:53,294           but it is absent from setuptools' `packages` configuration.

2024-01-09T12:26:53,295           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-09T12:26:53,295           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2024-01-09T12:26:53,296           to the `packages` configuration field.

2024-01-09T12:26:53,297           Alternatively, you can also rely on setuptools' discovery methods
2024-01-09T12:26:53,297           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-09T12:26:53,297           instead of `find_packages(...)`/`find:`).

2024-01-09T12:26:53,298           You can read more about "package discovery" on setuptools documentation page:

2024-01-09T12:26:53,299           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-09T12:26:53,300           If you don't want 'moleculekit.distance_utils' to be distributed and are
2024-01-09T12:26:53,300           already explicitly excluding 'moleculekit.distance_utils' via
2024-01-09T12:26:53,301           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-09T12:26:53,301           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-09T12:26:53,302           combination with a more fine grained `package-data` configuration.

2024-01-09T12:26:53,303           You can read more about "package data files" on setuptools documentation page:

2024-01-09T12:26:53,304           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-09T12:26:53,305           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-09T12:26:53,306                 even if it does not contain any `.py` files.
2024-01-09T12:26:53,306                 On the other hand, currently there is no concept of package data
2024-01-09T12:26:53,307                 directory, all directories are treated like packages.
2024-01-09T12:26:53,308           ********************************************************************************

2024-01-09T12:26:53,309   !!
2024-01-09T12:26:53,309     check.warn(importable)
2024-01-09T12:26:53,310   /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos' is absent from the `packages` configuration.
2024-01-09T12:26:53,310   !!

2024-01-09T12:26:53,311           ********************************************************************************
2024-01-09T12:26:53,312           ############################
2024-01-09T12:26:53,312           # Package would be ignored #
2024-01-09T12:26:53,313           ############################
2024-01-09T12:26:53,313           Python recognizes 'moleculekit.fileformats.binpos' as an importable package[^1],
2024-01-09T12:26:53,314           but it is absent from setuptools' `packages` configuration.

2024-01-09T12:26:53,315           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-09T12:26:53,316           package, please make sure that 'moleculekit.fileformats.binpos' is explicitly added
2024-01-09T12:26:53,316           to the `packages` configuration field.

2024-01-09T12:26:53,318           Alternatively, you can also rely on setuptools' discovery methods
2024-01-09T12:26:53,318           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-09T12:26:53,319           instead of `find_packages(...)`/`find:`).

2024-01-09T12:26:53,319           You can read more about "package discovery" on setuptools documentation page:

2024-01-09T12:26:53,320           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-09T12:26:53,321           If you don't want 'moleculekit.fileformats.binpos' to be distributed and are
2024-01-09T12:26:53,321           already explicitly excluding 'moleculekit.fileformats.binpos' via
2024-01-09T12:26:53,322           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-09T12:26:53,322           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-09T12:26:53,322           combination with a more fine grained `package-data` configuration.

2024-01-09T12:26:53,323           You can read more about "package data files" on setuptools documentation page:

2024-01-09T12:26:53,324           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-09T12:26:53,325           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-09T12:26:53,325                 even if it does not contain any `.py` files.
2024-01-09T12:26:53,326                 On the other hand, currently there is no concept of package data
2024-01-09T12:26:53,326                 directory, all directories are treated like packages.
2024-01-09T12:26:53,327           ********************************************************************************

2024-01-09T12:26:53,327   !!
2024-01-09T12:26:53,328     check.warn(importable)
2024-01-09T12:26:53,328   /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos.include' is absent from the `packages` configuration.
2024-01-09T12:26:53,329   !!

2024-01-09T12:26:53,330           ********************************************************************************
2024-01-09T12:26:53,330           ############################
2024-01-09T12:26:53,331           # Package would be ignored #
2024-01-09T12:26:53,331           ############################
2024-01-09T12:26:53,332           Python recognizes 'moleculekit.fileformats.binpos.include' as an importable package[^1],
2024-01-09T12:26:53,332           but it is absent from setuptools' `packages` configuration.

2024-01-09T12:26:53,333           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-09T12:26:53,334           package, please make sure that 'moleculekit.fileformats.binpos.include' is explicitly added
2024-01-09T12:26:53,334           to the `packages` configuration field.

2024-01-09T12:26:53,335           Alternatively, you can also rely on setuptools' discovery methods
2024-01-09T12:26:53,336           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-09T12:26:53,336           instead of `find_packages(...)`/`find:`).

2024-01-09T12:26:53,337           You can read more about "package discovery" on setuptools documentation page:

2024-01-09T12:26:53,338           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-09T12:26:53,339           If you don't want 'moleculekit.fileformats.binpos.include' to be distributed and are
2024-01-09T12:26:53,340           already explicitly excluding 'moleculekit.fileformats.binpos.include' via
2024-01-09T12:26:53,340           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-09T12:26:53,341           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-09T12:26:53,342           combination with a more fine grained `package-data` configuration.

2024-01-09T12:26:53,343           You can read more about "package data files" on setuptools documentation page:

2024-01-09T12:26:53,344           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-09T12:26:53,345           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-09T12:26:53,346                 even if it does not contain any `.py` files.
2024-01-09T12:26:53,346                 On the other hand, currently there is no concept of package data
2024-01-09T12:26:53,347                 directory, all directories are treated like packages.
2024-01-09T12:26:53,347           ********************************************************************************

2024-01-09T12:26:53,348   !!
2024-01-09T12:26:53,349     check.warn(importable)
2024-01-09T12:26:53,349   /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos.src' is absent from the `packages` configuration.
2024-01-09T12:26:53,350   !!

2024-01-09T12:26:53,351           ********************************************************************************
2024-01-09T12:26:53,351           ############################
2024-01-09T12:26:53,352           # Package would be ignored #
2024-01-09T12:26:53,352           ############################
2024-01-09T12:26:53,352           Python recognizes 'moleculekit.fileformats.binpos.src' as an importable package[^1],
2024-01-09T12:26:53,353           but it is absent from setuptools' `packages` configuration.

2024-01-09T12:26:53,354           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-09T12:26:53,354           package, please make sure that 'moleculekit.fileformats.binpos.src' is explicitly added
2024-01-09T12:26:53,355           to the `packages` configuration field.

2024-01-09T12:26:53,356           Alternatively, you can also rely on setuptools' discovery methods
2024-01-09T12:26:53,356           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-09T12:26:53,356           instead of `find_packages(...)`/`find:`).

2024-01-09T12:26:53,357           You can read more about "package discovery" on setuptools documentation page:

2024-01-09T12:26:53,359           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-09T12:26:53,360           If you don't want 'moleculekit.fileformats.binpos.src' to be distributed and are
2024-01-09T12:26:53,360           already explicitly excluding 'moleculekit.fileformats.binpos.src' via
2024-01-09T12:26:53,361           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-09T12:26:53,361           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-09T12:26:53,362           combination with a more fine grained `package-data` configuration.

2024-01-09T12:26:53,363           You can read more about "package data files" on setuptools documentation page:

2024-01-09T12:26:53,364           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-09T12:26:53,366           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-09T12:26:53,366                 even if it does not contain any `.py` files.
2024-01-09T12:26:53,367                 On the other hand, currently there is no concept of package data
2024-01-09T12:26:53,367                 directory, all directories are treated like packages.
2024-01-09T12:26:53,368           ********************************************************************************

2024-01-09T12:26:53,369   !!
2024-01-09T12:26:53,370     check.warn(importable)
2024-01-09T12:26:53,370   /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd' is absent from the `packages` configuration.
2024-01-09T12:26:53,371   !!

2024-01-09T12:26:53,372           ********************************************************************************
2024-01-09T12:26:53,372           ############################
2024-01-09T12:26:53,373           # Package would be ignored #
2024-01-09T12:26:53,374           ############################
2024-01-09T12:26:53,374           Python recognizes 'moleculekit.fileformats.dcd' as an importable package[^1],
2024-01-09T12:26:53,375           but it is absent from setuptools' `packages` configuration.

2024-01-09T12:26:53,376           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-09T12:26:53,376           package, please make sure that 'moleculekit.fileformats.dcd' is explicitly added
2024-01-09T12:26:53,377           to the `packages` configuration field.

2024-01-09T12:26:53,378           Alternatively, you can also rely on setuptools' discovery methods
2024-01-09T12:26:53,378           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-09T12:26:53,379           instead of `find_packages(...)`/`find:`).

2024-01-09T12:26:53,380           You can read more about "package discovery" on setuptools documentation page:

2024-01-09T12:26:53,381           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-09T12:26:53,384           If you don't want 'moleculekit.fileformats.dcd' to be distributed and are
2024-01-09T12:26:53,394           already explicitly excluding 'moleculekit.fileformats.dcd' via
2024-01-09T12:26:53,395           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-09T12:26:53,396           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-09T12:26:53,396           combination with a more fine grained `package-data` configuration.

2024-01-09T12:26:53,398           You can read more about "package data files" on setuptools documentation page:

2024-01-09T12:26:53,399           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-09T12:26:53,400           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-09T12:26:53,401                 even if it does not contain any `.py` files.
2024-01-09T12:26:53,402                 On the other hand, currently there is no concept of package data
2024-01-09T12:26:53,402                 directory, all directories are treated like packages.
2024-01-09T12:26:53,403           ********************************************************************************

2024-01-09T12:26:53,412   !!
2024-01-09T12:26:53,413     check.warn(importable)
2024-01-09T12:26:53,414   /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd.include' is absent from the `packages` configuration.
2024-01-09T12:26:53,415   !!

2024-01-09T12:26:53,423           ********************************************************************************
2024-01-09T12:26:53,423           ############################
2024-01-09T12:26:53,424           # Package would be ignored #
2024-01-09T12:26:53,424           ############################
2024-01-09T12:26:53,425           Python recognizes 'moleculekit.fileformats.dcd.include' as an importable package[^1],
2024-01-09T12:26:53,426           but it is absent from setuptools' `packages` configuration.

2024-01-09T12:26:53,427           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-09T12:26:53,428           package, please make sure that 'moleculekit.fileformats.dcd.include' is explicitly added
2024-01-09T12:26:53,428           to the `packages` configuration field.

2024-01-09T12:26:53,431           Alternatively, you can also rely on setuptools' discovery methods
2024-01-09T12:26:53,431           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-09T12:26:53,432           instead of `find_packages(...)`/`find:`).

2024-01-09T12:26:53,433           You can read more about "package discovery" on setuptools documentation page:

2024-01-09T12:26:53,435           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-09T12:26:53,437           If you don't want 'moleculekit.fileformats.dcd.include' to be distributed and are
2024-01-09T12:26:53,442           already explicitly excluding 'moleculekit.fileformats.dcd.include' via
2024-01-09T12:26:53,450           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-09T12:26:53,451           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-09T12:26:53,452           combination with a more fine grained `package-data` configuration.

2024-01-09T12:26:53,453           You can read more about "package data files" on setuptools documentation page:

2024-01-09T12:26:53,454           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-09T12:26:53,455           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-09T12:26:53,456                 even if it does not contain any `.py` files.
2024-01-09T12:26:53,456                 On the other hand, currently there is no concept of package data
2024-01-09T12:26:53,457                 directory, all directories are treated like packages.
2024-01-09T12:26:53,457           ********************************************************************************

2024-01-09T12:26:53,458   !!
2024-01-09T12:26:53,459     check.warn(importable)
2024-01-09T12:26:53,459   /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd.src' is absent from the `packages` configuration.
2024-01-09T12:26:53,460   !!

2024-01-09T12:26:53,461           ********************************************************************************
2024-01-09T12:26:53,464           ############################
2024-01-09T12:26:53,469           # Package would be ignored #
2024-01-09T12:26:53,476           ############################
2024-01-09T12:26:53,476           Python recognizes 'moleculekit.fileformats.dcd.src' as an importable package[^1],
2024-01-09T12:26:53,477           but it is absent from setuptools' `packages` configuration.

2024-01-09T12:26:53,478           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-09T12:26:53,479           package, please make sure that 'moleculekit.fileformats.dcd.src' is explicitly added
2024-01-09T12:26:53,479           to the `packages` configuration field.

2024-01-09T12:26:53,480           Alternatively, you can also rely on setuptools' discovery methods
2024-01-09T12:26:53,481           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-09T12:26:53,481           instead of `find_packages(...)`/`find:`).

2024-01-09T12:26:53,482           You can read more about "package discovery" on setuptools documentation page:

2024-01-09T12:26:53,483           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-09T12:26:53,484           If you don't want 'moleculekit.fileformats.dcd.src' to be distributed and are
2024-01-09T12:26:53,485           already explicitly excluding 'moleculekit.fileformats.dcd.src' via
2024-01-09T12:26:53,486           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-09T12:26:53,486           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-09T12:26:53,487           combination with a more fine grained `package-data` configuration.

2024-01-09T12:26:53,488           You can read more about "package data files" on setuptools documentation page:

2024-01-09T12:26:53,489           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-09T12:26:53,491           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-09T12:26:53,492                 even if it does not contain any `.py` files.
2024-01-09T12:26:53,492                 On the other hand, currently there is no concept of package data
2024-01-09T12:26:53,493                 directory, all directories are treated like packages.
2024-01-09T12:26:53,494           ********************************************************************************

2024-01-09T12:26:53,496   !!
2024-01-09T12:26:53,496     check.warn(importable)
2024-01-09T12:26:53,496   /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc' is absent from the `packages` configuration.
2024-01-09T12:26:53,497   !!

2024-01-09T12:26:53,498           ********************************************************************************
2024-01-09T12:26:53,498           ############################
2024-01-09T12:26:53,499           # Package would be ignored #
2024-01-09T12:26:53,499           ############################
2024-01-09T12:26:53,500           Python recognizes 'moleculekit.fileformats.xtc' as an importable package[^1],
2024-01-09T12:26:53,500           but it is absent from setuptools' `packages` configuration.

2024-01-09T12:26:53,501           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-09T12:26:53,502           package, please make sure that 'moleculekit.fileformats.xtc' is explicitly added
2024-01-09T12:26:53,502           to the `packages` configuration field.

2024-01-09T12:26:53,503           Alternatively, you can also rely on setuptools' discovery methods
2024-01-09T12:26:53,504           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-09T12:26:53,504           instead of `find_packages(...)`/`find:`).

2024-01-09T12:26:53,505           You can read more about "package discovery" on setuptools documentation page:

2024-01-09T12:26:53,506           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-09T12:26:53,507           If you don't want 'moleculekit.fileformats.xtc' to be distributed and are
2024-01-09T12:26:53,508           already explicitly excluding 'moleculekit.fileformats.xtc' via
2024-01-09T12:26:53,508           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-09T12:26:53,509           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-09T12:26:53,509           combination with a more fine grained `package-data` configuration.

2024-01-09T12:26:53,511           You can read more about "package data files" on setuptools documentation page:

2024-01-09T12:26:53,512           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-09T12:26:53,514           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-09T12:26:53,514                 even if it does not contain any `.py` files.
2024-01-09T12:26:53,515                 On the other hand, currently there is no concept of package data
2024-01-09T12:26:53,516                 directory, all directories are treated like packages.
2024-01-09T12:26:53,516           ********************************************************************************

2024-01-09T12:26:53,518   !!
2024-01-09T12:26:53,518     check.warn(importable)
2024-01-09T12:26:53,519   /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc.include' is absent from the `packages` configuration.
2024-01-09T12:26:53,519   !!

2024-01-09T12:26:53,521           ********************************************************************************
2024-01-09T12:26:53,521           ############################
2024-01-09T12:26:53,522           # Package would be ignored #
2024-01-09T12:26:53,522           ############################
2024-01-09T12:26:53,523           Python recognizes 'moleculekit.fileformats.xtc.include' as an importable package[^1],
2024-01-09T12:26:53,524           but it is absent from setuptools' `packages` configuration.

2024-01-09T12:26:53,525           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-09T12:26:53,526           package, please make sure that 'moleculekit.fileformats.xtc.include' is explicitly added
2024-01-09T12:26:53,526           to the `packages` configuration field.

2024-01-09T12:26:53,528           Alternatively, you can also rely on setuptools' discovery methods
2024-01-09T12:26:53,529           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-09T12:26:53,529           instead of `find_packages(...)`/`find:`).

2024-01-09T12:26:53,530           You can read more about "package discovery" on setuptools documentation page:

2024-01-09T12:26:53,531           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-09T12:26:53,532           If you don't want 'moleculekit.fileformats.xtc.include' to be distributed and are
2024-01-09T12:26:53,532           already explicitly excluding 'moleculekit.fileformats.xtc.include' via
2024-01-09T12:26:53,533           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-09T12:26:53,533           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-09T12:26:53,534           combination with a more fine grained `package-data` configuration.

2024-01-09T12:26:53,535           You can read more about "package data files" on setuptools documentation page:

2024-01-09T12:26:53,536           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-09T12:26:53,537           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-09T12:26:53,538                 even if it does not contain any `.py` files.
2024-01-09T12:26:53,538                 On the other hand, currently there is no concept of package data
2024-01-09T12:26:53,539                 directory, all directories are treated like packages.
2024-01-09T12:26:53,539           ********************************************************************************

2024-01-09T12:26:53,541   !!
2024-01-09T12:26:53,541     check.warn(importable)
2024-01-09T12:26:53,542   /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc.src' is absent from the `packages` configuration.
2024-01-09T12:26:53,542   !!

2024-01-09T12:26:53,544           ********************************************************************************
2024-01-09T12:26:53,545           ############################
2024-01-09T12:26:53,545           # Package would be ignored #
2024-01-09T12:26:53,546           ############################
2024-01-09T12:26:53,546           Python recognizes 'moleculekit.fileformats.xtc.src' as an importable package[^1],
2024-01-09T12:26:53,547           but it is absent from setuptools' `packages` configuration.

2024-01-09T12:26:53,575           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-09T12:26:53,603           package, please make sure that 'moleculekit.fileformats.xtc.src' is explicitly added
2024-01-09T12:26:53,654           to the `packages` configuration field.

2024-01-09T12:26:53,679           Alternatively, you can also rely on setuptools' discovery methods
2024-01-09T12:26:53,680           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-09T12:26:53,681           instead of `find_packages(...)`/`find:`).

2024-01-09T12:26:53,682           You can read more about "package discovery" on setuptools documentation page:

2024-01-09T12:26:53,683           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-09T12:26:53,684           If you don't want 'moleculekit.fileformats.xtc.src' to be distributed and are
2024-01-09T12:26:53,685           already explicitly excluding 'moleculekit.fileformats.xtc.src' via
2024-01-09T12:26:53,686           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-09T12:26:53,686           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-09T12:26:53,687           combination with a more fine grained `package-data` configuration.

2024-01-09T12:26:53,688           You can read more about "package data files" on setuptools documentation page:

2024-01-09T12:26:53,690           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-09T12:26:53,691           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-09T12:26:53,692                 even if it does not contain any `.py` files.
2024-01-09T12:26:53,692                 On the other hand, currently there is no concept of package data
2024-01-09T12:26:53,693                 directory, all directories are treated like packages.
2024-01-09T12:26:53,693           ********************************************************************************

2024-01-09T12:26:53,696   !!
2024-01-09T12:26:53,697     check.warn(importable)
2024-01-09T12:26:53,698   /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2024-01-09T12:26:53,699   !!

2024-01-09T12:26:53,702           ********************************************************************************
2024-01-09T12:26:53,703           ############################
2024-01-09T12:26:53,704           # Package would be ignored #
2024-01-09T12:26:53,705           ############################
2024-01-09T12:26:53,706           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2024-01-09T12:26:53,706           but it is absent from setuptools' `packages` configuration.

2024-01-09T12:26:53,708           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-09T12:26:53,709           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2024-01-09T12:26:53,710           to the `packages` configuration field.

2024-01-09T12:26:53,712           Alternatively, you can also rely on setuptools' discovery methods
2024-01-09T12:26:53,713           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-09T12:26:53,714           instead of `find_packages(...)`/`find:`).

2024-01-09T12:26:53,715           You can read more about "package discovery" on setuptools documentation page:

2024-01-09T12:26:53,716           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-09T12:26:53,718           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2024-01-09T12:26:53,718           already explicitly excluding 'moleculekit.interactions.cationpi' via
2024-01-09T12:26:53,719           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-09T12:26:53,720           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-09T12:26:53,721           combination with a more fine grained `package-data` configuration.

2024-01-09T12:26:53,722           You can read more about "package data files" on setuptools documentation page:

2024-01-09T12:26:53,723           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-09T12:26:53,725           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-09T12:26:53,726                 even if it does not contain any `.py` files.
2024-01-09T12:26:53,726                 On the other hand, currently there is no concept of package data
2024-01-09T12:26:53,727                 directory, all directories are treated like packages.
2024-01-09T12:26:53,728           ********************************************************************************

2024-01-09T12:26:53,729   !!
2024-01-09T12:26:53,730     check.warn(importable)
2024-01-09T12:26:53,731   /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2024-01-09T12:26:53,731   !!

2024-01-09T12:26:53,732           ********************************************************************************
2024-01-09T12:26:53,733           ############################
2024-01-09T12:26:53,733           # Package would be ignored #
2024-01-09T12:26:53,734           ############################
2024-01-09T12:26:53,735           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2024-01-09T12:26:53,735           but it is absent from setuptools' `packages` configuration.

2024-01-09T12:26:53,736           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-09T12:26:53,736           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2024-01-09T12:26:53,737           to the `packages` configuration field.

2024-01-09T12:26:53,738           Alternatively, you can also rely on setuptools' discovery methods
2024-01-09T12:26:53,738           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-09T12:26:53,738           instead of `find_packages(...)`/`find:`).

2024-01-09T12:26:53,739           You can read more about "package discovery" on setuptools documentation page:

2024-01-09T12:26:53,740           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-09T12:26:53,741           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2024-01-09T12:26:53,742           already explicitly excluding 'moleculekit.interactions.hbonds' via
2024-01-09T12:26:53,742           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-09T12:26:53,743           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-09T12:26:53,743           combination with a more fine grained `package-data` configuration.

2024-01-09T12:26:53,744           You can read more about "package data files" on setuptools documentation page:

2024-01-09T12:26:53,745           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-09T12:26:53,747           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-09T12:26:53,747                 even if it does not contain any `.py` files.
2024-01-09T12:26:53,748                 On the other hand, currently there is no concept of package data
2024-01-09T12:26:53,748                 directory, all directories are treated like packages.
2024-01-09T12:26:53,749           ********************************************************************************

2024-01-09T12:26:53,750   !!
2024-01-09T12:26:53,750     check.warn(importable)
2024-01-09T12:26:53,751   /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2024-01-09T12:26:53,751   !!

2024-01-09T12:26:53,753           ********************************************************************************
2024-01-09T12:26:53,753           ############################
2024-01-09T12:26:53,754           # Package would be ignored #
2024-01-09T12:26:53,754           ############################
2024-01-09T12:26:53,755           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2024-01-09T12:26:53,755           but it is absent from setuptools' `packages` configuration.

2024-01-09T12:26:53,756           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-09T12:26:53,757           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2024-01-09T12:26:53,757           to the `packages` configuration field.

2024-01-09T12:26:53,758           Alternatively, you can also rely on setuptools' discovery methods
2024-01-09T12:26:53,759           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-09T12:26:53,759           instead of `find_packages(...)`/`find:`).

2024-01-09T12:26:53,760           You can read more about "package discovery" on setuptools documentation page:

2024-01-09T12:26:53,761           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-09T12:26:53,762           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2024-01-09T12:26:53,763           already explicitly excluding 'moleculekit.interactions.pipi' via
2024-01-09T12:26:53,763           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-09T12:26:53,764           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-09T12:26:53,764           combination with a more fine grained `package-data` configuration.

2024-01-09T12:26:53,765           You can read more about "package data files" on setuptools documentation page:

2024-01-09T12:26:53,766           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-09T12:26:53,767           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-09T12:26:53,767                 even if it does not contain any `.py` files.
2024-01-09T12:26:53,768                 On the other hand, currently there is no concept of package data
2024-01-09T12:26:53,768                 directory, all directories are treated like packages.
2024-01-09T12:26:53,768           ********************************************************************************

2024-01-09T12:26:53,769   !!
2024-01-09T12:26:53,770     check.warn(importable)
2024-01-09T12:26:53,770   /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2024-01-09T12:26:53,771   !!

2024-01-09T12:26:53,772           ********************************************************************************
2024-01-09T12:26:53,772           ############################
2024-01-09T12:26:53,773           # Package would be ignored #
2024-01-09T12:26:53,773           ############################
2024-01-09T12:26:53,774           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2024-01-09T12:26:53,774           but it is absent from setuptools' `packages` configuration.

2024-01-09T12:26:53,775           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-09T12:26:53,776           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2024-01-09T12:26:53,776           to the `packages` configuration field.

2024-01-09T12:26:53,777           Alternatively, you can also rely on setuptools' discovery methods
2024-01-09T12:26:53,777           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-09T12:26:53,778           instead of `find_packages(...)`/`find:`).

2024-01-09T12:26:53,779           You can read more about "package discovery" on setuptools documentation page:

2024-01-09T12:26:53,780           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-09T12:26:53,781           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2024-01-09T12:26:53,781           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2024-01-09T12:26:53,782           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-09T12:26:53,782           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-09T12:26:53,783           combination with a more fine grained `package-data` configuration.

2024-01-09T12:26:53,784           You can read more about "package data files" on setuptools documentation page:

2024-01-09T12:26:53,786           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-09T12:26:53,787           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-09T12:26:53,788                 even if it does not contain any `.py` files.
2024-01-09T12:26:53,788                 On the other hand, currently there is no concept of package data
2024-01-09T12:26:53,789                 directory, all directories are treated like packages.
2024-01-09T12:26:53,789           ********************************************************************************

2024-01-09T12:26:53,791   !!
2024-01-09T12:26:53,792     check.warn(importable)
2024-01-09T12:26:53,792   /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2024-01-09T12:26:53,792   !!

2024-01-09T12:26:53,794           ********************************************************************************
2024-01-09T12:26:53,794           ############################
2024-01-09T12:26:53,794           # Package would be ignored #
2024-01-09T12:26:53,795           ############################
2024-01-09T12:26:53,795           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2024-01-09T12:26:53,796           but it is absent from setuptools' `packages` configuration.

2024-01-09T12:26:53,797           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-09T12:26:53,797           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2024-01-09T12:26:53,798           to the `packages` configuration field.

2024-01-09T12:26:53,798           Alternatively, you can also rely on setuptools' discovery methods
2024-01-09T12:26:53,799           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-09T12:26:53,799           instead of `find_packages(...)`/`find:`).

2024-01-09T12:26:53,800           You can read more about "package discovery" on setuptools documentation page:

2024-01-09T12:26:53,801           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-09T12:26:53,802           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2024-01-09T12:26:53,802           already explicitly excluding 'moleculekit.occupancy_utils' via
2024-01-09T12:26:53,803           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-09T12:26:53,803           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-09T12:26:53,804           combination with a more fine grained `package-data` configuration.

2024-01-09T12:26:53,805           You can read more about "package data files" on setuptools documentation page:

2024-01-09T12:26:53,806           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-09T12:26:53,807           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-09T12:26:53,808                 even if it does not contain any `.py` files.
2024-01-09T12:26:53,808                 On the other hand, currently there is no concept of package data
2024-01-09T12:26:53,808                 directory, all directories are treated like packages.
2024-01-09T12:26:53,809           ********************************************************************************

2024-01-09T12:26:53,810   !!
2024-01-09T12:26:53,811     check.warn(importable)
2024-01-09T12:26:53,811   /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2024-01-09T12:26:53,812   !!

2024-01-09T12:26:53,813           ********************************************************************************
2024-01-09T12:26:53,813           ############################
2024-01-09T12:26:53,814           # Package would be ignored #
2024-01-09T12:26:53,814           ############################
2024-01-09T12:26:53,815           Python recognizes 'moleculekit.share' as an importable package[^1],
2024-01-09T12:26:53,815           but it is absent from setuptools' `packages` configuration.

2024-01-09T12:26:53,816           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-09T12:26:53,817           package, please make sure that 'moleculekit.share' is explicitly added
2024-01-09T12:26:53,817           to the `packages` configuration field.

2024-01-09T12:26:53,818           Alternatively, you can also rely on setuptools' discovery methods
2024-01-09T12:26:53,819           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-09T12:26:53,820           instead of `find_packages(...)`/`find:`).

2024-01-09T12:26:53,820           You can read more about "package discovery" on setuptools documentation page:

2024-01-09T12:26:53,821           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-09T12:26:53,822           If you don't want 'moleculekit.share' to be distributed and are
2024-01-09T12:26:53,823           already explicitly excluding 'moleculekit.share' via
2024-01-09T12:26:53,823           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-09T12:26:53,823           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-09T12:26:53,824           combination with a more fine grained `package-data` configuration.

2024-01-09T12:26:53,825           You can read more about "package data files" on setuptools documentation page:

2024-01-09T12:26:53,825           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-09T12:26:53,827           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-09T12:26:53,827                 even if it does not contain any `.py` files.
2024-01-09T12:26:53,828                 On the other hand, currently there is no concept of package data
2024-01-09T12:26:53,828                 directory, all directories are treated like packages.
2024-01-09T12:26:53,828           ********************************************************************************

2024-01-09T12:26:53,830   !!
2024-01-09T12:26:53,830     check.warn(importable)
2024-01-09T12:26:53,830   /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2024-01-09T12:26:53,831   !!

2024-01-09T12:26:53,832           ********************************************************************************
2024-01-09T12:26:53,832           ############################
2024-01-09T12:26:53,833           # Package would be ignored #
2024-01-09T12:26:53,833           ############################
2024-01-09T12:26:53,834           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2024-01-09T12:26:53,834           but it is absent from setuptools' `packages` configuration.

2024-01-09T12:26:53,835           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-09T12:26:53,836           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2024-01-09T12:26:53,836           to the `packages` configuration field.

2024-01-09T12:26:53,837           Alternatively, you can also rely on setuptools' discovery methods
2024-01-09T12:26:53,838           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-09T12:26:53,838           instead of `find_packages(...)`/`find:`).

2024-01-09T12:26:53,839           You can read more about "package discovery" on setuptools documentation page:

2024-01-09T12:26:53,840           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-09T12:26:53,841           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2024-01-09T12:26:53,842           already explicitly excluding 'moleculekit.share.atomselect' via
2024-01-09T12:26:53,842           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-09T12:26:53,842           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-09T12:26:53,843           combination with a more fine grained `package-data` configuration.

2024-01-09T12:26:53,844           You can read more about "package data files" on setuptools documentation page:

2024-01-09T12:26:53,845           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-09T12:26:53,847           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-09T12:26:53,847                 even if it does not contain any `.py` files.
2024-01-09T12:26:53,848                 On the other hand, currently there is no concept of package data
2024-01-09T12:26:53,848                 directory, all directories are treated like packages.
2024-01-09T12:26:53,848           ********************************************************************************

2024-01-09T12:26:53,849   !!
2024-01-09T12:26:53,850     check.warn(importable)
2024-01-09T12:26:53,850   /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2024-01-09T12:26:53,851   !!

2024-01-09T12:26:53,851           ********************************************************************************
2024-01-09T12:26:53,852           ############################
2024-01-09T12:26:53,852           # Package would be ignored #
2024-01-09T12:26:53,853           ############################
2024-01-09T12:26:53,853           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2024-01-09T12:26:53,853           but it is absent from setuptools' `packages` configuration.

2024-01-09T12:26:53,854           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-09T12:26:53,855           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2024-01-09T12:26:53,855           to the `packages` configuration field.

2024-01-09T12:26:53,856           Alternatively, you can also rely on setuptools' discovery methods
2024-01-09T12:26:53,857           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-09T12:26:53,857           instead of `find_packages(...)`/`find:`).

2024-01-09T12:26:53,858           You can read more about "package discovery" on setuptools documentation page:

2024-01-09T12:26:53,859           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-09T12:26:53,860           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2024-01-09T12:26:53,860           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2024-01-09T12:26:53,861           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-09T12:26:53,861           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-09T12:26:53,862           combination with a more fine grained `package-data` configuration.

2024-01-09T12:26:53,863           You can read more about "package data files" on setuptools documentation page:

2024-01-09T12:26:53,864           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-09T12:26:53,865           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-09T12:26:53,866                 even if it does not contain any `.py` files.
2024-01-09T12:26:53,866                 On the other hand, currently there is no concept of package data
2024-01-09T12:26:53,867                 directory, all directories are treated like packages.
2024-01-09T12:26:53,867           ********************************************************************************

2024-01-09T12:26:53,868   !!
2024-01-09T12:26:53,869     check.warn(importable)
2024-01-09T12:26:53,869   /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2024-01-09T12:26:53,870   !!

2024-01-09T12:26:53,871           ********************************************************************************
2024-01-09T12:26:53,871           ############################
2024-01-09T12:26:53,872           # Package would be ignored #
2024-01-09T12:26:53,872           ############################
2024-01-09T12:26:53,873           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2024-01-09T12:26:53,873           but it is absent from setuptools' `packages` configuration.

2024-01-09T12:26:53,874           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-09T12:26:53,875           package, please make sure that 'moleculekit.tmalign' is explicitly added
2024-01-09T12:26:53,875           to the `packages` configuration field.

2024-01-09T12:26:53,876           Alternatively, you can also rely on setuptools' discovery methods
2024-01-09T12:26:53,876           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-09T12:26:53,877           instead of `find_packages(...)`/`find:`).

2024-01-09T12:26:53,878           You can read more about "package discovery" on setuptools documentation page:

2024-01-09T12:26:53,878           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-09T12:26:53,879           If you don't want 'moleculekit.tmalign' to be distributed and are
2024-01-09T12:26:53,880           already explicitly excluding 'moleculekit.tmalign' via
2024-01-09T12:26:53,880           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-09T12:26:53,881           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-09T12:26:53,881           combination with a more fine grained `package-data` configuration.

2024-01-09T12:26:53,882           You can read more about "package data files" on setuptools documentation page:

2024-01-09T12:26:53,883           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-09T12:26:53,884           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-09T12:26:53,885                 even if it does not contain any `.py` files.
2024-01-09T12:26:53,885                 On the other hand, currently there is no concept of package data
2024-01-09T12:26:53,885                 directory, all directories are treated like packages.
2024-01-09T12:26:53,886           ********************************************************************************

2024-01-09T12:26:53,887   !!
2024-01-09T12:26:53,887     check.warn(importable)
2024-01-09T12:26:53,888   /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2024-01-09T12:26:53,888   !!

2024-01-09T12:26:53,889           ********************************************************************************
2024-01-09T12:26:53,890           ############################
2024-01-09T12:26:53,890           # Package would be ignored #
2024-01-09T12:26:53,890           ############################
2024-01-09T12:26:53,891           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2024-01-09T12:26:53,892           but it is absent from setuptools' `packages` configuration.

2024-01-09T12:26:53,893           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-09T12:26:53,893           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2024-01-09T12:26:53,894           to the `packages` configuration field.

2024-01-09T12:26:53,895           Alternatively, you can also rely on setuptools' discovery methods
2024-01-09T12:26:53,895           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-09T12:26:53,896           instead of `find_packages(...)`/`find:`).

2024-01-09T12:26:53,897           You can read more about "package discovery" on setuptools documentation page:

2024-01-09T12:26:53,898           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-09T12:26:53,899           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2024-01-09T12:26:53,899           already explicitly excluding 'moleculekit.tmalign.include' via
2024-01-09T12:26:53,900           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-09T12:26:53,900           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-09T12:26:53,901           combination with a more fine grained `package-data` configuration.

2024-01-09T12:26:53,902           You can read more about "package data files" on setuptools documentation page:

2024-01-09T12:26:53,903           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-09T12:26:53,904           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-09T12:26:53,904                 even if it does not contain any `.py` files.
2024-01-09T12:26:53,905                 On the other hand, currently there is no concept of package data
2024-01-09T12:26:53,905                 directory, all directories are treated like packages.
2024-01-09T12:26:53,906           ********************************************************************************

2024-01-09T12:26:53,906   !!
2024-01-09T12:26:53,907     check.warn(importable)
2024-01-09T12:26:53,907   /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2024-01-09T12:26:53,908   !!

2024-01-09T12:26:53,909           ********************************************************************************
2024-01-09T12:26:53,909           ############################
2024-01-09T12:26:53,909           # Package would be ignored #
2024-01-09T12:26:53,910           ############################
2024-01-09T12:26:53,910           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2024-01-09T12:26:53,911           but it is absent from setuptools' `packages` configuration.

2024-01-09T12:26:53,912           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-09T12:26:53,912           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2024-01-09T12:26:53,913           to the `packages` configuration field.

2024-01-09T12:26:53,914           Alternatively, you can also rely on setuptools' discovery methods
2024-01-09T12:26:53,914           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-09T12:26:53,914           instead of `find_packages(...)`/`find:`).

2024-01-09T12:26:53,915           You can read more about "package discovery" on setuptools documentation page:

2024-01-09T12:26:53,916           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-09T12:26:53,917           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2024-01-09T12:26:53,918           already explicitly excluding 'moleculekit.tmalign.src' via
2024-01-09T12:26:53,919           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-09T12:26:53,919           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-09T12:26:53,920           combination with a more fine grained `package-data` configuration.

2024-01-09T12:26:53,921           You can read more about "package data files" on setuptools documentation page:

2024-01-09T12:26:53,922           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-09T12:26:53,923           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-09T12:26:53,924                 even if it does not contain any `.py` files.
2024-01-09T12:26:53,924                 On the other hand, currently there is no concept of package data
2024-01-09T12:26:53,925                 directory, all directories are treated like packages.
2024-01-09T12:26:53,925           ********************************************************************************

2024-01-09T12:26:53,927   !!
2024-01-09T12:26:53,927     check.warn(importable)
2024-01-09T12:26:53,928   /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2024-01-09T12:26:53,928   !!

2024-01-09T12:26:53,929           ********************************************************************************
2024-01-09T12:26:53,930           ############################
2024-01-09T12:26:53,930           # Package would be ignored #
2024-01-09T12:26:53,931           ############################
2024-01-09T12:26:53,931           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2024-01-09T12:26:53,932           but it is absent from setuptools' `packages` configuration.

2024-01-09T12:26:53,932           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-09T12:26:53,933           package, please make sure that 'moleculekit.wrapping' is explicitly added
2024-01-09T12:26:53,933           to the `packages` configuration field.

2024-01-09T12:26:53,934           Alternatively, you can also rely on setuptools' discovery methods
2024-01-09T12:26:53,935           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-09T12:26:53,935           instead of `find_packages(...)`/`find:`).

2024-01-09T12:26:53,936           You can read more about "package discovery" on setuptools documentation page:

2024-01-09T12:26:53,937           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-09T12:26:53,938           If you don't want 'moleculekit.wrapping' to be distributed and are
2024-01-09T12:26:53,938           already explicitly excluding 'moleculekit.wrapping' via
2024-01-09T12:26:53,939           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-09T12:26:53,939           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-09T12:26:53,940           combination with a more fine grained `package-data` configuration.

2024-01-09T12:26:53,941           You can read more about "package data files" on setuptools documentation page:

2024-01-09T12:26:53,942           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-09T12:26:53,943           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-09T12:26:53,943                 even if it does not contain any `.py` files.
2024-01-09T12:26:53,944                 On the other hand, currently there is no concept of package data
2024-01-09T12:26:53,944                 directory, all directories are treated like packages.
2024-01-09T12:26:53,945           ********************************************************************************

2024-01-09T12:26:53,946   !!
2024-01-09T12:26:53,946     check.warn(importable)
2024-01-09T12:26:53,947   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-01-09T12:26:53,947   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-01-09T12:26:53,948   creating build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2024-01-09T12:26:53,948   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2024-01-09T12:26:53,949   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2024-01-09T12:26:53,950   creating build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2024-01-09T12:26:53,950   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2024-01-09T12:26:53,951   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2024-01-09T12:26:53,951   creating build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2024-01-09T12:26:53,952   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2024-01-09T12:26:53,952   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2024-01-09T12:26:53,953   creating build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2024-01-09T12:26:53,953   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2024-01-09T12:26:53,954   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2024-01-09T12:26:53,954   creating build/lib.linux-armv7l-cpython-311/moleculekit/share
2024-01-09T12:26:53,955   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2024-01-09T12:26:53,955   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2024-01-09T12:26:53,956   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2024-01-09T12:26:53,956   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect
2024-01-09T12:26:53,956   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect
2024-01-09T12:26:53,957   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr
2024-01-09T12:26:53,957   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,958   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,958   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,959   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,959   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,960   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,960   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,961   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,961   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,962   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,962   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,963   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,963   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,964   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,964   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,965   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,965   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,966   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,966   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,967   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,968   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,968   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,969   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,969   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,969   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,970   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,970   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,971   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,971   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,972   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,972   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,972   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,973   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,973   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,974   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,974   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,975   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,975   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,976   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,976   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,977   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,977   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,978   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,979   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,979   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,980   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,980   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,981   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,981   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,982   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,983   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,983   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,984   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,984   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,985   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,985   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,986   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,986   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,987   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,987   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,988   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,988   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,989   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,989   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,990   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,990   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,991   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,992   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,992   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,993   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,993   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,994   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,994   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,995   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,995   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,996   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,996   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,997   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,997   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,998   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,998   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,999   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,999   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:53,999   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,000   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,000   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,001   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,001   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,002   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,002   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,003   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,003   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,004   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,004   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,005   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,006   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,006   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,007   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,007   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,008   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,008   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,009   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,009   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,010   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,010   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,011   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,011   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,012   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,012   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,013   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,013   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,014   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,014   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,015   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,015   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,016   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,016   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,017   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,017   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,018   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,018   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,019   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,019   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,020   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,021   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,021   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,022   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,023   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,026   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,028   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,031   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,033   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,035   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,037   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,040   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,042   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,044   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,046   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,049   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,051   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,053   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,055   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,058   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,060   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,062   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,065   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,067   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,069   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,072   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,074   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,076   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,078   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,080   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,083   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,085   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,087   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,090   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,092   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,094   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,096   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,099   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,101   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,103   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,105   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,107   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,109   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,112   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,114   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,116   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,119   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,121   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,123   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,125   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,128   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,130   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,132   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-01-09T12:26:54,134   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2024-01-09T12:26:54,135   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2024-01-09T12:26:54,158   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2024-01-09T12:26:54,160   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2024-01-09T12:26:54,162   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include
2024-01-09T12:26:54,163   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include
2024-01-09T12:26:54,165   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src
2024-01-09T12:26:54,166   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src
2024-01-09T12:26:54,172   creating build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2024-01-09T12:26:54,173   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2024-01-09T12:26:54,196   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2024-01-09T12:26:54,198   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-01-09T12:26:54,199   copying moleculekit/fileformats/binpos/binpos.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-01-09T12:26:54,213   copying moleculekit/fileformats/binpos/binpos.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-01-09T12:26:54,215   copying moleculekit/fileformats/binpos/binposlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-01-09T12:26:54,217   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include
2024-01-09T12:26:54,218   copying moleculekit/fileformats/binpos/include/binposplugin.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include
2024-01-09T12:26:54,220   copying moleculekit/fileformats/binpos/include/largefiles.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include
2024-01-09T12:26:54,222   copying moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include
2024-01-09T12:26:54,225   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src
2024-01-09T12:26:54,226   copying moleculekit/fileformats/binpos/src/binposplugin.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src
2024-01-09T12:26:54,228   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-01-09T12:26:54,229   copying moleculekit/fileformats/dcd/dcd.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-01-09T12:26:54,243   copying moleculekit/fileformats/dcd/dcd.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-01-09T12:26:54,246   copying moleculekit/fileformats/dcd/dcdlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-01-09T12:26:54,247   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-01-09T12:26:54,248   copying moleculekit/fileformats/dcd/include/dcdplugin.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-01-09T12:26:54,251   copying moleculekit/fileformats/dcd/include/endianswap.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-01-09T12:26:54,253   copying moleculekit/fileformats/dcd/include/fastio.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-01-09T12:26:54,256   copying moleculekit/fileformats/dcd/include/largefiles.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-01-09T12:26:54,258   copying moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-01-09T12:26:54,261   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src
2024-01-09T12:26:54,262   copying moleculekit/fileformats/dcd/src/dcdplugin.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src
2024-01-09T12:26:54,266   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-01-09T12:26:54,267   copying moleculekit/fileformats/xtc/trr.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-01-09T12:26:54,291   copying moleculekit/fileformats/xtc/trr.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-01-09T12:26:54,294   copying moleculekit/fileformats/xtc/trrlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-01-09T12:26:54,296   copying moleculekit/fileformats/xtc/xdrlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-01-09T12:26:54,298   copying moleculekit/fileformats/xtc/xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-01-09T12:26:54,323   copying moleculekit/fileformats/xtc/xtc.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-01-09T12:26:54,325   copying moleculekit/fileformats/xtc/xtclib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-01-09T12:26:54,327   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-01-09T12:26:54,328   copying moleculekit/fileformats/xtc/include/trr_header.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-01-09T12:26:54,330   copying moleculekit/fileformats/xtc/include/xdr_seek.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-01-09T12:26:54,332   copying moleculekit/fileformats/xtc/include/xdrfile.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-01-09T12:26:54,335   copying moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-01-09T12:26:54,337   copying moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-01-09T12:26:54,339   copying moleculekit/fileformats/xtc/include/xtc.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-01-09T12:26:54,341   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-01-09T12:26:54,342   copying moleculekit/fileformats/xtc/src/xdr_seek.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-01-09T12:26:54,344   copying moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-01-09T12:26:54,348   copying moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-01-09T12:26:54,351   copying moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-01-09T12:26:54,353   copying moleculekit/fileformats/xtc/src/xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-01-09T12:26:54,355   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2024-01-09T12:26:54,356   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2024-01-09T12:26:54,376   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2024-01-09T12:26:54,378   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2024-01-09T12:26:54,379   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2024-01-09T12:26:54,399   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2024-01-09T12:26:54,401   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2024-01-09T12:26:54,402   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2024-01-09T12:26:54,422   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2024-01-09T12:26:54,424   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2024-01-09T12:26:54,425   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2024-01-09T12:26:54,446   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2024-01-09T12:26:54,456   UPDATING build/lib.linux-armv7l-cpython-311/moleculekit/_version.py
2024-01-09T12:26:54,457   set build/lib.linux-armv7l-cpython-311/moleculekit/_version.py to '1.8.18'
2024-01-09T12:26:54,458   running build_ext
2024-01-09T12:26:54,467   building 'moleculekit.interactions.hbonds' extension
2024-01-09T12:26:54,468   creating build/temp.linux-armv7l-cpython-311
2024-01-09T12:26:54,469   creating build/temp.linux-armv7l-cpython-311/moleculekit
2024-01-09T12:26:54,469   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions
2024-01-09T12:26:54,470   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2024-01-09T12:26:54,471   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.o -O3
2024-01-09T12:26:54,809   In file included from /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-01-09T12:26:54,810                    from /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-01-09T12:26:54,810                    from /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-01-09T12:26:54,811                    from moleculekit/interactions/hbonds/hbonds.cpp:1230:
2024-01-09T12:26:54,811   /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-01-09T12:26:54,812      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-01-09T12:26:54,812         |  ^~~~~~~
2024-01-09T12:27:25,270   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so
2024-01-09T12:27:25,560   building 'moleculekit.interactions.pipi' extension
2024-01-09T12:27:25,561   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2024-01-09T12:27:25,561   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.o -O3
2024-01-09T12:27:25,899   In file included from /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-01-09T12:27:25,900                    from /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-01-09T12:27:25,901                    from /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-01-09T12:27:25,902                    from moleculekit/interactions/pipi/pipi.cpp:1230:
2024-01-09T12:27:25,902   /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-01-09T12:27:25,903      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-01-09T12:27:25,903         |  ^~~~~~~
2024-01-09T12:27:58,879   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so
2024-01-09T12:27:59,163   building 'moleculekit.interactions.cationpi' extension
2024-01-09T12:27:59,164   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2024-01-09T12:27:59,164   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.o -O3
2024-01-09T12:27:59,483   In file included from /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-01-09T12:27:59,483                    from /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-01-09T12:27:59,484                    from /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-01-09T12:27:59,484                    from moleculekit/interactions/cationpi/cationpi.cpp:1230:
2024-01-09T12:27:59,485   /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-01-09T12:27:59,485      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-01-09T12:27:59,486         |  ^~~~~~~
2024-01-09T12:28:31,896   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so
2024-01-09T12:28:32,182   building 'moleculekit.interactions.sigmahole' extension
2024-01-09T12:28:32,183   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2024-01-09T12:28:32,183   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.o -O3
2024-01-09T12:28:32,500   In file included from /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-01-09T12:28:32,501                    from /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-01-09T12:28:32,501                    from /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-01-09T12:28:32,502                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1230:
2024-01-09T12:28:32,503   /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-01-09T12:28:32,503      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-01-09T12:28:32,504         |  ^~~~~~~
2024-01-09T12:29:04,537   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so
2024-01-09T12:29:04,822   building 'moleculekit.wrapping' extension
2024-01-09T12:29:04,822   creating build/temp.linux-armv7l-cpython-311/moleculekit/wrapping
2024-01-09T12:29:04,823   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.o -O3
2024-01-09T12:29:05,135   In file included from /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-01-09T12:29:05,136                    from /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-01-09T12:29:05,136                    from /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-01-09T12:29:05,137                    from moleculekit/wrapping/wrapping.cpp:1230:
2024-01-09T12:29:05,137   /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-01-09T12:29:05,138      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-01-09T12:29:05,138         |  ^~~~~~~
2024-01-09T12:29:35,388   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so
2024-01-09T12:29:35,582   building 'moleculekit.bondguesser_utils' extension
2024-01-09T12:29:35,583   creating build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2024-01-09T12:29:35,583   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2024-01-09T12:29:35,901   In file included from /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-01-09T12:29:35,902                    from /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-01-09T12:29:35,902                    from /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-01-09T12:29:35,903                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1230:
2024-01-09T12:29:35,903   /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-01-09T12:29:35,904      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-01-09T12:29:35,905         |  ^~~~~~~
2024-01-09T12:29:38,216   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2024-01-09T12:29:38,216   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19782:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-01-09T12:29:38,217   19782 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2024-01-09T12:29:38,218         |                       ~~~~~~~~~~^~~~~~~~~~~
2024-01-09T12:29:38,219   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19794:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-01-09T12:29:38,219   19794 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2024-01-09T12:29:38,220         |                         ~~~~~~~~~~^~~~~~~~~~~
2024-01-09T12:29:38,221   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19806:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-01-09T12:29:38,222   19806 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2024-01-09T12:29:38,222         |                           ~~~~~~~~~~^~~~~~~~~~~
2024-01-09T12:29:38,223   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19845:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-01-09T12:29:38,223   19845 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-01-09T12:29:38,224         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-01-09T12:29:38,224   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19884:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-01-09T12:29:38,225   19884 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-01-09T12:29:38,226         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-01-09T12:29:38,226   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19923:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-01-09T12:29:38,227   19923 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-01-09T12:29:38,227         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-01-09T12:29:38,228   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19962:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-01-09T12:29:38,229   19962 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-01-09T12:29:38,229         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-01-09T12:29:38,230   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19968:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-01-09T12:29:38,231   19968 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-01-09T12:29:38,231         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-01-09T12:29:38,232   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20009:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-01-09T12:29:38,233   20009 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-01-09T12:29:38,234         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-01-09T12:29:38,234   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20015:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-01-09T12:29:38,235   20015 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-01-09T12:29:38,236         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-01-09T12:29:38,236   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20056:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-01-09T12:29:38,237   20056 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-01-09T12:29:38,238         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-01-09T12:29:38,239   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20062:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-01-09T12:29:38,239   20062 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-01-09T12:29:38,240         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-01-09T12:29:38,241   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20103:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-01-09T12:29:38,241   20103 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-01-09T12:29:38,242         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-01-09T12:29:38,243   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20156:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-01-09T12:29:38,243   20156 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-01-09T12:29:38,244         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-01-09T12:29:38,244   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20203:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-01-09T12:29:38,245   20203 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-01-09T12:29:38,245         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-01-09T12:29:38,246   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20244:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-01-09T12:29:38,247   20244 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-01-09T12:29:38,247         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-01-09T12:29:38,248   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20250:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-01-09T12:29:38,249   20250 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-01-09T12:29:38,249         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-01-09T12:29:38,250   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20256:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-01-09T12:29:38,251   20256 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-01-09T12:29:38,251         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-01-09T12:29:38,252   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20303:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-01-09T12:29:38,253   20303 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-01-09T12:29:38,254         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-01-09T12:29:38,254   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20309:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-01-09T12:29:38,255   20309 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-01-09T12:29:38,256         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-01-09T12:29:38,256   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20350:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-01-09T12:29:38,257   20350 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-01-09T12:29:38,258         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-01-09T12:29:38,258   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20362:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-01-09T12:29:38,259   20362 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-01-09T12:29:38,260         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-01-09T12:29:38,261   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20415:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-01-09T12:29:38,262   20415 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-01-09T12:29:38,262         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-01-09T12:29:38,263   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2024-01-09T12:29:38,263   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21037:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-01-09T12:29:38,264   21037 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2024-01-09T12:29:38,264         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2024-01-09T12:29:38,265   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21074:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-01-09T12:29:38,266   21074 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2024-01-09T12:29:38,266         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-01-09T12:30:04,664   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so
2024-01-09T12:30:04,932   building 'moleculekit.atomselect_utils' extension
2024-01-09T12:30:04,933   creating build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2024-01-09T12:30:04,934   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.o -O3
2024-01-09T12:30:05,251   In file included from /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-01-09T12:30:05,252                    from /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-01-09T12:30:05,252                    from /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-01-09T12:30:05,253                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1247:
2024-01-09T12:30:05,253   /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-01-09T12:30:05,254      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-01-09T12:30:05,254         |  ^~~~~~~
2024-01-09T12:30:07,769   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2024-01-09T12:30:07,770   moleculekit/atomselect_utils/atomselect_utils.cpp:23216:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-01-09T12:30:07,771   23216 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2024-01-09T12:30:07,772         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-01-09T12:30:07,777   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-01-09T12:30:07,778   moleculekit/atomselect_utils/atomselect_utils.cpp:23468:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-01-09T12:30:07,778   23468 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-01-09T12:30:07,779         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-01-09T12:30:07,784   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-01-09T12:30:07,785   moleculekit/atomselect_utils/atomselect_utils.cpp:23735:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-01-09T12:30:07,786   23735 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-01-09T12:30:07,786         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-01-09T12:30:41,560   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so
2024-01-09T12:30:41,865   building 'moleculekit.distance_utils' extension
2024-01-09T12:30:41,865   creating build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils
2024-01-09T12:30:41,867   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.o -O3
2024-01-09T12:30:42,179   In file included from /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-01-09T12:30:42,179                    from /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-01-09T12:30:42,180                    from /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-01-09T12:30:42,181                    from moleculekit/distance_utils/distance_utils.cpp:1230:
2024-01-09T12:30:42,182   /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-01-09T12:30:42,183      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-01-09T12:30:42,183         |  ^~~~~~~
2024-01-09T12:31:20,823   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so
2024-01-09T12:31:21,113   building 'moleculekit.occupancy_utils' extension
2024-01-09T12:31:21,114   creating build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2024-01-09T12:31:21,114   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.o -O3
2024-01-09T12:31:21,436   In file included from /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-01-09T12:31:21,437                    from /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-01-09T12:31:21,437                    from /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-01-09T12:31:21,438                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1230:
2024-01-09T12:31:21,438   /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-01-09T12:31:21,439      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-01-09T12:31:21,440         |  ^~~~~~~
2024-01-09T12:31:48,795   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so
2024-01-09T12:31:48,986   building 'moleculekit.xtc' extension
2024-01-09T12:31:48,986   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats
2024-01-09T12:31:48,987   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-01-09T12:31:48,987   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-01-09T12:31:48,988   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.o
2024-01-09T12:31:49,665   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-09T12:31:49,666      66 |         "OK",
2024-01-09T12:31:49,667         |         ^~~~
2024-01-09T12:31:49,668   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-09T12:31:49,668      67 |         "Header",
2024-01-09T12:31:49,669         |         ^~~~~~~~
2024-01-09T12:31:49,670   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-09T12:31:49,670      68 |         "String",
2024-01-09T12:31:49,671         |         ^~~~~~~~
2024-01-09T12:31:49,671   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-09T12:31:49,672      69 |         "Double",
2024-01-09T12:31:49,672         |         ^~~~~~~~
2024-01-09T12:31:49,673   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-09T12:31:49,674      70 |         "Integer",
2024-01-09T12:31:49,674         |         ^~~~~~~~~
2024-01-09T12:31:49,675   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-09T12:31:49,675      71 |         "Float",
2024-01-09T12:31:49,676         |         ^~~~~~~
2024-01-09T12:31:49,676   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-09T12:31:49,677      72 |         "Unsigned integer",
2024-01-09T12:31:49,678         |         ^~~~~~~~~~~~~~~~~~
2024-01-09T12:31:49,678   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-09T12:31:49,679      73 |         "Compressed 3D coordinate",
2024-01-09T12:31:49,680         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-01-09T12:31:49,680   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-09T12:31:49,681      74 |         "Closing file",
2024-01-09T12:31:49,681         |         ^~~~~~~~~~~~~~
2024-01-09T12:31:49,682   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-09T12:31:49,683      75 |         "Magic number",
2024-01-09T12:31:49,684         |         ^~~~~~~~~~~~~~
2024-01-09T12:31:49,685   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-09T12:31:49,685      76 |         "Not enough memory",
2024-01-09T12:31:49,686         |         ^~~~~~~~~~~~~~~~~~~
2024-01-09T12:31:49,687   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-09T12:31:49,688      77 |         "End of file",
2024-01-09T12:31:49,688         |         ^~~~~~~~~~~~~
2024-01-09T12:31:49,689   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-09T12:31:49,690      78 |         "File not found"
2024-01-09T12:31:49,690         |         ^~~~~~~~~~~~~~~~
2024-01-09T12:31:49,691   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-01-09T12:31:49,692   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-09T12:31:49,692     459 |     while (size >= num && num_of_bits < 32)
2024-01-09T12:31:49,693         |            ~~~~~^~~~~~
2024-01-09T12:31:49,694   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-01-09T12:31:49,694   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-09T12:31:49,695     505 |     while (bytes[num_of_bytes] >= num)
2024-01-09T12:31:49,696         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-01-09T12:31:49,697   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-01-09T12:31:49,698   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-09T12:31:49,698     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-01-09T12:31:49,699         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-01-09T12:31:49,699   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-09T12:31:49,700     616 |                 for (i = 0; i < num_of_bytes; i++)
2024-01-09T12:31:49,700         |                             ~~^~~~~~~~~~~~~~
2024-01-09T12:31:49,701   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-09T12:31:49,701     624 |                 for (i = 0; i < num_of_bytes-1; i++)
2024-01-09T12:31:49,702         |                             ~~^~~~~~~~~~~~~~~~
2024-01-09T12:31:49,702   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-01-09T12:31:49,703   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-09T12:31:49,704     664 |                 if (lastbits < num_of_bits)
2024-01-09T12:31:49,704         |                     ~~~~~~~~~^~~~~~~~~~~~~
2024-01-09T12:31:49,705   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-01-09T12:31:49,705   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-09T12:31:49,706     785 |         if(size3>xfp->buf1size)
2024-01-09T12:31:49,707         |            ~~~~~^~~~~~~~~~~~~~
2024-01-09T12:31:49,707   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-09T12:31:49,708     842 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-01-09T12:31:49,709         |                          ^
2024-01-09T12:31:49,710   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-09T12:31:49,710     932 |                                 if(countmjh >= size3 ) { return -1; }
2024-01-09T12:31:49,711         |                                    ~~~~~~~~~^~~~~~~~
2024-01-09T12:31:49,712   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-09T12:31:49,713     935 |                                 if(countmjh >= size3 ) { return -1; }
2024-01-09T12:31:49,713         |                                    ~~~~~~~~~^~~~~~~~
2024-01-09T12:31:49,714   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-09T12:31:49,714     938 |                                 if(countmjh >= size3 ) { return -1; }
2024-01-09T12:31:49,715         |                                    ~~~~~~~~~^~~~~~~~
2024-01-09T12:31:49,716   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-09T12:31:49,717     945 |                                 if(countmjh >= size3 ) { return -1; }
2024-01-09T12:31:49,717         |                                    ~~~~~~~~~^~~~~~~~
2024-01-09T12:31:49,718   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-09T12:31:49,719     948 |                                 if(countmjh >= size3 ) { return -1; }
2024-01-09T12:31:49,719         |                                    ~~~~~~~~~^~~~~~~~
2024-01-09T12:31:49,720   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-09T12:31:49,720     951 |                                 if(countmjh >= size3 ) { return -1; }
2024-01-09T12:31:49,721         |                                    ~~~~~~~~~^~~~~~~~
2024-01-09T12:31:49,722   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:24: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-01-09T12:31:49,722     756 |         int smallidx,  minidx, maxidx;
2024-01-09T12:31:49,723         |                        ^~~~~~
2024-01-09T12:31:49,723   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-01-09T12:31:49,724     759 |         int smallnum, smaller, larger, i, is_smaller, run;
2024-01-09T12:31:49,724         |                                ^~~~~~
2024-01-09T12:31:49,725   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:13: warning: unused variable ‘errval’ [-Wunused-variable]
2024-01-09T12:31:49,725     763 |         int errval=1;
2024-01-09T12:31:49,726         |             ^~~~~~
2024-01-09T12:31:49,726   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-01-09T12:31:49,727   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-09T12:31:49,727    1011 |         if(size3>xfp->buf1size)
2024-01-09T12:31:49,728         |            ~~~~~^~~~~~~~~~~~~~
2024-01-09T12:31:49,729   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-09T12:31:49,730    1068 |                 countmjh++; if( countmjh> size3) { return -1; }
2024-01-09T12:31:49,730         |                                 ~~~~~~~~^~~~~~~
2024-01-09T12:31:49,731   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-09T12:31:49,732    1084 |           countmjh++; if( countmjh> size3) { return -1; }
2024-01-09T12:31:49,732         |                           ~~~~~~~~^~~~~~~
2024-01-09T12:31:49,733   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-09T12:31:49,734    1098 |           countmjh++; if( countmjh> size3) { return -1; }
2024-01-09T12:31:49,734         |                           ~~~~~~~~^~~~~~~
2024-01-09T12:31:49,735   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-09T12:31:49,736    1137 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-01-09T12:31:49,736         |                         ^
2024-01-09T12:31:49,737   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-09T12:31:49,738    1143 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-01-09T12:31:49,738         |                          ^
2024-01-09T12:31:49,739   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-09T12:31:49,740    1275 |         if(tmp==(unsigned int)buf2[0])
2024-01-09T12:31:49,741         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-01-09T12:31:49,741   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-01-09T12:31:49,742    1001 |         int errval;
2024-01-09T12:31:49,742         |             ^~~~~~
2024-01-09T12:31:49,743   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-01-09T12:31:49,743   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-09T12:31:49,744    1316 |         if(size3>xfp->buf1size)
2024-01-09T12:31:49,745         |            ~~~~~^~~~~~~~~~~~~~
2024-01-09T12:31:49,745   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-09T12:31:49,746    1377 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-01-09T12:31:49,746         |                          ^
2024-01-09T12:31:49,749   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:32: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-01-09T12:31:49,750    1289 |         int smallidx,  maxidx, minidx;
2024-01-09T12:31:49,750         |                                ^~~~~~
2024-01-09T12:31:49,751   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-01-09T12:31:49,751    1292 |         int smallnum, smaller, larger, i, is_smaller, run;
2024-01-09T12:31:49,752         |                                ^~~~~~
2024-01-09T12:31:49,752   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:13: warning: unused variable ‘errval’ [-Wunused-variable]
2024-01-09T12:31:49,753    1297 |         int errval=1;
2024-01-09T12:31:49,754         |             ^~~~~~
2024-01-09T12:31:49,755   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-01-09T12:31:49,756   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-09T12:31:49,756    1513 |         if(size3>xfp->buf1size) {
2024-01-09T12:31:49,757         |            ~~~~~^~~~~~~~~~~~~~
2024-01-09T12:31:49,761   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-09T12:31:49,762    1628 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-01-09T12:31:49,762         |                         ^
2024-01-09T12:31:49,763   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-09T12:31:49,764    1633 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-01-09T12:31:49,764         |                          ^
2024-01-09T12:31:49,768   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-09T12:31:49,769    1743 |         if(tmp==(unsigned int)buf2[0])
2024-01-09T12:31:49,769         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-01-09T12:31:49,770   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-01-09T12:31:49,771    1504 |         int errval=1;
2024-01-09T12:31:49,771         |             ^~~~~~
2024-01-09T12:31:52,605   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_xtc.o
2024-01-09T12:31:52,876   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xtc.o
2024-01-09T12:31:53,681   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2024-01-09T12:31:53,682   moleculekit/fileformats/xtc/src/xtc.cpp:238:37: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-09T12:31:53,683     238 |                 for (aidx = 0; aidx < natoms; aidx++)
2024-01-09T12:31:53,683         |                                ~~~~~^~~~~~~~
2024-01-09T12:31:53,684   moleculekit/fileformats/xtc/src/xtc.cpp:207:13: warning: unused variable ‘nf3’ [-Wunused-variable]
2024-01-09T12:31:53,684     207 |         int nf3 = nframes * 3; // Precalculate 3 * nframes for the coordinate lookup macro
2024-01-09T12:31:53,685         |             ^~~
2024-01-09T12:31:53,692   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2024-01-09T12:31:53,693   moleculekit/fileformats/xtc/src/xtc.cpp:418:13: warning: unused variable ‘nf3’ [-Wunused-variable]
2024-01-09T12:31:53,693     418 |         int nf3 = nframes * 3;
2024-01-09T12:31:53,694         |             ^~~
2024-01-09T12:31:53,695   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2024-01-09T12:31:53,696   moleculekit/fileformats/xtc/src/xtc.cpp:548:45: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-09T12:31:53,696     548 |                         for (aidx = 0; aidx < natoms; aidx++)
2024-01-09T12:31:53,697         |                                        ~~~~~^~~~~~~~
2024-01-09T12:31:53,699   moleculekit/fileformats/xtc/src/xtc.cpp:617:45: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-09T12:31:53,700     617 |                         for (aidx = 0; aidx < natoms; aidx++)
2024-01-09T12:31:53,701         |                                        ~~~~~^~~~~~~~
2024-01-09T12:31:53,701   moleculekit/fileformats/xtc/src/xtc.cpp:491:13: warning: unused variable ‘reading_index’ [-Wunused-variable]
2024-01-09T12:31:53,702     491 |         int reading_index = 0;
2024-01-09T12:31:53,703         |             ^~~~~~~~~~~~~
2024-01-09T12:31:53,704   moleculekit/fileformats/xtc/src/xtc.cpp:492:13: warning: unused variable ‘writing_index’ [-Wunused-variable]
2024-01-09T12:31:53,704     492 |         int writing_index = 0;
2024-01-09T12:31:53,705         |             ^~~~~~~~~~~~~
2024-01-09T12:31:54,604   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtc.o
2024-01-09T12:31:54,917   In file included from /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-01-09T12:31:54,917                    from /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-01-09T12:31:54,918                    from /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-01-09T12:31:54,919                    from moleculekit/fileformats/xtc/xtc.cpp:1234:
2024-01-09T12:31:54,919   /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-01-09T12:31:54,920      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-01-09T12:31:54,920         |  ^~~~~~~
2024-01-09T12:32:18,883   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xtc.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtc.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so
2024-01-09T12:32:19,172   building 'moleculekit.trr' extension
2024-01-09T12:32:19,173   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdr_seek.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdr_seek.o
2024-01-09T12:32:19,291   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.o
2024-01-09T12:32:19,924   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-09T12:32:19,925      66 |         "OK",
2024-01-09T12:32:19,926         |         ^~~~
2024-01-09T12:32:19,926   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-09T12:32:19,927      67 |         "Header",
2024-01-09T12:32:19,928         |         ^~~~~~~~
2024-01-09T12:32:19,928   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-09T12:32:19,929      68 |         "String",
2024-01-09T12:32:19,930         |         ^~~~~~~~
2024-01-09T12:32:19,930   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-09T12:32:19,931      69 |         "Double",
2024-01-09T12:32:19,932         |         ^~~~~~~~
2024-01-09T12:32:19,933   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-09T12:32:19,933      70 |         "Integer",
2024-01-09T12:32:19,934         |         ^~~~~~~~~
2024-01-09T12:32:19,935   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-09T12:32:19,936      71 |         "Float",
2024-01-09T12:32:19,937         |         ^~~~~~~
2024-01-09T12:32:19,937   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-09T12:32:19,938      72 |         "Unsigned integer",
2024-01-09T12:32:19,938         |         ^~~~~~~~~~~~~~~~~~
2024-01-09T12:32:19,939   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-09T12:32:19,939      73 |         "Compressed 3D coordinate",
2024-01-09T12:32:19,940         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-01-09T12:32:19,941   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-09T12:32:19,941      74 |         "Closing file",
2024-01-09T12:32:19,942         |         ^~~~~~~~~~~~~~
2024-01-09T12:32:19,942   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-09T12:32:19,943      75 |         "Magic number",
2024-01-09T12:32:19,943         |         ^~~~~~~~~~~~~~
2024-01-09T12:32:19,944   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-09T12:32:19,945      76 |         "Not enough memory",
2024-01-09T12:32:19,945         |         ^~~~~~~~~~~~~~~~~~~
2024-01-09T12:32:19,946   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-09T12:32:19,946      77 |         "End of file",
2024-01-09T12:32:19,947         |         ^~~~~~~~~~~~~
2024-01-09T12:32:19,947   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-09T12:32:19,948      78 |         "File not found"
2024-01-09T12:32:19,949         |         ^~~~~~~~~~~~~~~~
2024-01-09T12:32:19,950   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-01-09T12:32:19,951   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-09T12:32:19,951     459 |     while (size >= num && num_of_bits < 32)
2024-01-09T12:32:19,952         |            ~~~~~^~~~~~
2024-01-09T12:32:19,953   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-01-09T12:32:19,953   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-09T12:32:19,954     505 |     while (bytes[num_of_bytes] >= num)
2024-01-09T12:32:19,955         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-01-09T12:32:19,956   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-01-09T12:32:19,956   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-09T12:32:19,957     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-01-09T12:32:19,957         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-01-09T12:32:19,958   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-09T12:32:19,959     616 |                 for (i = 0; i < num_of_bytes; i++)
2024-01-09T12:32:19,959         |                             ~~^~~~~~~~~~~~~~
2024-01-09T12:32:19,960   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-09T12:32:19,961     624 |                 for (i = 0; i < num_of_bytes-1; i++)
2024-01-09T12:32:19,962         |                             ~~^~~~~~~~~~~~~~~~
2024-01-09T12:32:19,963   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-01-09T12:32:19,963   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-09T12:32:19,964     664 |                 if (lastbits < num_of_bits)
2024-01-09T12:32:19,964         |                     ~~~~~~~~~^~~~~~~~~~~~~
2024-01-09T12:32:19,965   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-01-09T12:32:19,966   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-09T12:32:19,966     785 |         if(size3>xfp->buf1size)
2024-01-09T12:32:19,967         |            ~~~~~^~~~~~~~~~~~~~
2024-01-09T12:32:19,967   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-09T12:32:19,968     842 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-01-09T12:32:19,968         |                          ^
2024-01-09T12:32:19,969   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-09T12:32:19,969     932 |                                 if(countmjh >= size3 ) { return -1; }
2024-01-09T12:32:19,970         |                                    ~~~~~~~~~^~~~~~~~
2024-01-09T12:32:19,971   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-09T12:32:19,971     935 |                                 if(countmjh >= size3 ) { return -1; }
2024-01-09T12:32:19,972         |                                    ~~~~~~~~~^~~~~~~~
2024-01-09T12:32:19,973   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-09T12:32:19,973     938 |                                 if(countmjh >= size3 ) { return -1; }
2024-01-09T12:32:19,974         |                                    ~~~~~~~~~^~~~~~~~
2024-01-09T12:32:19,975   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-09T12:32:19,975     945 |                                 if(countmjh >= size3 ) { return -1; }
2024-01-09T12:32:19,976         |                                    ~~~~~~~~~^~~~~~~~
2024-01-09T12:32:19,977   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-09T12:32:19,978     948 |                                 if(countmjh >= size3 ) { return -1; }
2024-01-09T12:32:19,978         |                                    ~~~~~~~~~^~~~~~~~
2024-01-09T12:32:19,979   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-09T12:32:19,980     951 |                                 if(countmjh >= size3 ) { return -1; }
2024-01-09T12:32:19,980         |                                    ~~~~~~~~~^~~~~~~~
2024-01-09T12:32:19,981   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:24: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-01-09T12:32:19,982     756 |         int smallidx,  minidx, maxidx;
2024-01-09T12:32:19,982         |                        ^~~~~~
2024-01-09T12:32:19,983   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-01-09T12:32:19,984     759 |         int smallnum, smaller, larger, i, is_smaller, run;
2024-01-09T12:32:19,985         |                                ^~~~~~
2024-01-09T12:32:19,986   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:13: warning: unused variable ‘errval’ [-Wunused-variable]
2024-01-09T12:32:19,986     763 |         int errval=1;
2024-01-09T12:32:19,987         |             ^~~~~~
2024-01-09T12:32:19,988   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-01-09T12:32:19,988   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-09T12:32:19,989    1011 |         if(size3>xfp->buf1size)
2024-01-09T12:32:19,989         |            ~~~~~^~~~~~~~~~~~~~
2024-01-09T12:32:19,990   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-09T12:32:19,990    1068 |                 countmjh++; if( countmjh> size3) { return -1; }
2024-01-09T12:32:19,991         |                                 ~~~~~~~~^~~~~~~
2024-01-09T12:32:19,991   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-09T12:32:19,992    1084 |           countmjh++; if( countmjh> size3) { return -1; }
2024-01-09T12:32:19,992         |                           ~~~~~~~~^~~~~~~
2024-01-09T12:32:19,993   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-09T12:32:19,994    1098 |           countmjh++; if( countmjh> size3) { return -1; }
2024-01-09T12:32:19,994         |                           ~~~~~~~~^~~~~~~
2024-01-09T12:32:19,995   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-09T12:32:19,995    1137 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-01-09T12:32:19,996         |                         ^
2024-01-09T12:32:19,997   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-09T12:32:19,998    1143 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-01-09T12:32:19,998         |                          ^
2024-01-09T12:32:19,999   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-09T12:32:20,000    1275 |         if(tmp==(unsigned int)buf2[0])
2024-01-09T12:32:20,000         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-01-09T12:32:20,001   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-01-09T12:32:20,002    1001 |         int errval;
2024-01-09T12:32:20,002         |             ^~~~~~
2024-01-09T12:32:20,003   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-01-09T12:32:20,004   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-09T12:32:20,004    1316 |         if(size3>xfp->buf1size)
2024-01-09T12:32:20,005         |            ~~~~~^~~~~~~~~~~~~~
2024-01-09T12:32:20,006   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-09T12:32:20,006    1377 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-01-09T12:32:20,007         |                          ^
2024-01-09T12:32:20,008   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:32: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-01-09T12:32:20,009    1289 |         int smallidx,  maxidx, minidx;
2024-01-09T12:32:20,009         |                                ^~~~~~
2024-01-09T12:32:20,010   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-01-09T12:32:20,010    1292 |         int smallnum, smaller, larger, i, is_smaller, run;
2024-01-09T12:32:20,011         |                                ^~~~~~
2024-01-09T12:32:20,011   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:13: warning: unused variable ‘errval’ [-Wunused-variable]
2024-01-09T12:32:20,012    1297 |         int errval=1;
2024-01-09T12:32:20,012         |             ^~~~~~
2024-01-09T12:32:20,013   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-01-09T12:32:20,014   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-09T12:32:20,014    1513 |         if(size3>xfp->buf1size) {
2024-01-09T12:32:20,015         |            ~~~~~^~~~~~~~~~~~~~
2024-01-09T12:32:20,015   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-09T12:32:20,016    1628 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-01-09T12:32:20,017         |                         ^
2024-01-09T12:32:20,017   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-09T12:32:20,018    1633 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-01-09T12:32:20,018         |                          ^
2024-01-09T12:32:20,019   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-09T12:32:20,020    1743 |         if(tmp==(unsigned int)buf2[0])
2024-01-09T12:32:20,020         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-01-09T12:32:20,021   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-01-09T12:32:20,022    1504 |         int errval=1;
2024-01-09T12:32:20,022         |             ^~~~~~
2024-01-09T12:32:22,870   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdrfile_trr.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_trr.o
2024-01-09T12:32:22,975   moleculekit/fileformats/xtc/src/xdrfile_trr.c: In function ‘do_trnheader’:
2024-01-09T12:32:22,976   moleculekit/fileformats/xtc/src/xdrfile_trr.c:111:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-01-09T12:32:22,977     111 |         if (slen != strlen(version)+1)
2024-01-09T12:32:22,978         |                  ^~
2024-01-09T12:32:22,978   moleculekit/fileformats/xtc/src/xdrfile_trr.c:121:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-01-09T12:32:22,979     121 |         if (xdrfile_write_string(version,xd) != (strlen(version)+1) )
2024-01-09T12:32:22,980         |                                              ^~
2024-01-09T12:32:23,682   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/trr.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trr.o
2024-01-09T12:32:24,075   In file included from /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-01-09T12:32:24,076                    from /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-01-09T12:32:24,077                    from /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-01-09T12:32:24,077                    from moleculekit/fileformats/xtc/trr.c:1226:
2024-01-09T12:32:24,077   /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-01-09T12:32:24,078      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-01-09T12:32:24,078         |  ^~~~~~~
2024-01-09T12:32:24,855   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_22_calc_len_and_offsets’:
2024-01-09T12:32:24,870   moleculekit/fileformats/xtc/trr.c:16333:37: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare]
2024-01-09T12:32:24,871   16333 |       __pyx_t_6 = (__pyx_v_n_frames == __pyx_t_14);
2024-01-09T12:32:24,871         |                                     ^~
2024-01-09T12:32:48,319   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pw_11moleculekit_3trr_17TRRTrajectoryFile_17_write’:
2024-01-09T12:32:48,320   moleculekit/fileformats/xtc/trr.c:1128:40: warning: ‘__pyx_v_status’ may be used uninitialized [-Wmaybe-uninitialized]
2024-01-09T12:32:48,321    1128 |   #define PyInt_FromLong               PyLong_FromLong
2024-01-09T12:32:48,321         |                                        ^~~~~~~~~~~~~~~
2024-01-09T12:32:48,334   moleculekit/fileformats/xtc/trr.c:14241:7: note: ‘__pyx_v_status’ was declared here
2024-01-09T12:32:48,335   14241 |   int __pyx_v_status;
2024-01-09T12:32:48,336         |       ^~~~~~~~~~~~~~
2024-01-09T12:32:59,991   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_12_read’:
2024-01-09T12:33:00,003   moleculekit/fileformats/xtc/trr.c:11540:19: warning: ‘__pyx_pybuffernd_forces.diminfo[2].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-01-09T12:33:00,003   11540 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_forces.diminfo[2].shape)) __pyx_t_4 = 2;
2024-01-09T12:33:00,004         |                   ^
2024-01-09T12:33:00,012   moleculekit/fileformats/xtc/trr.c:10072:21: note: ‘__pyx_pybuffernd_forces.diminfo[2].shape’ was declared here
2024-01-09T12:33:00,013   10072 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-01-09T12:33:00,014         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-01-09T12:33:00,023   moleculekit/fileformats/xtc/trr.c:11536:19: warning: ‘__pyx_pybuffernd_forces.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-01-09T12:33:00,024   11536 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_forces.diminfo[1].shape)) __pyx_t_4 = 1;
2024-01-09T12:33:00,024         |                   ^
2024-01-09T12:33:00,032   moleculekit/fileformats/xtc/trr.c:10072:21: note: ‘__pyx_pybuffernd_forces.diminfo[1].shape’ was declared here
2024-01-09T12:33:00,033   10072 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-01-09T12:33:00,034         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-01-09T12:33:00,035   moleculekit/fileformats/xtc/trr.c:2490:95: warning: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ may be used uninitialized [-Wmaybe-uninitialized]
2024-01-09T12:33:00,035    2490 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-01-09T12:33:00,036         |                                                                                               ^
2024-01-09T12:33:00,044   moleculekit/fileformats/xtc/trr.c:10072:21: note: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ was declared here
2024-01-09T12:33:00,045   10072 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-01-09T12:33:00,045         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-01-09T12:33:00,055   moleculekit/fileformats/xtc/trr.c:11530:59: warning: ‘__pyx_pybuffernd_forces.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-01-09T12:33:00,055   11530 |           __pyx_t_28 += __pyx_pybuffernd_forces.diminfo[0].shape;
2024-01-09T12:33:00,056         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-01-09T12:33:00,065   moleculekit/fileformats/xtc/trr.c:10072:21: note: ‘__pyx_pybuffernd_forces.diminfo[0].shape’ was declared here
2024-01-09T12:33:00,065   10072 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-01-09T12:33:00,066         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-01-09T12:33:00,075   moleculekit/fileformats/xtc/trr.c:11483:19: warning: ‘__pyx_pybuffernd_vel.diminfo[2].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-01-09T12:33:00,076   11483 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_vel.diminfo[2].shape)) __pyx_t_4 = 2;
2024-01-09T12:33:00,076         |                   ^
2024-01-09T12:33:00,085   moleculekit/fileformats/xtc/trr.c:10088:21: note: ‘__pyx_pybuffernd_vel.diminfo[2].shape’ was declared here
2024-01-09T12:33:00,086   10088 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-01-09T12:33:00,086         |                     ^~~~~~~~~~~~~~~~~~~~
2024-01-09T12:33:00,095   moleculekit/fileformats/xtc/trr.c:11479:19: warning: ‘__pyx_pybuffernd_vel.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-01-09T12:33:00,096   11479 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_vel.diminfo[1].shape)) __pyx_t_4 = 1;
2024-01-09T12:33:00,097         |                   ^
2024-01-09T12:33:00,105   moleculekit/fileformats/xtc/trr.c:10088:21: note: ‘__pyx_pybuffernd_vel.diminfo[1].shape’ was declared here
2024-01-09T12:33:00,106   10088 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-01-09T12:33:00,106         |                     ^~~~~~~~~~~~~~~~~~~~
2024-01-09T12:33:00,107   moleculekit/fileformats/xtc/trr.c:2490:95: warning: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ may be used uninitialized [-Wmaybe-uninitialized]
2024-01-09T12:33:00,108    2490 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-01-09T12:33:00,108         |                                                                                               ^
2024-01-09T12:33:00,117   moleculekit/fileformats/xtc/trr.c:10088:21: note: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ was declared here
2024-01-09T12:33:00,118   10088 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-01-09T12:33:00,118         |                     ^~~~~~~~~~~~~~~~~~~~
2024-01-09T12:33:00,127   moleculekit/fileformats/xtc/trr.c:11473:56: warning: ‘__pyx_pybuffernd_vel.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-01-09T12:33:00,128   11473 |           __pyx_t_28 += __pyx_pybuffernd_vel.diminfo[0].shape;
2024-01-09T12:33:00,129         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-01-09T12:33:00,137   moleculekit/fileformats/xtc/trr.c:10088:21: note: ‘__pyx_pybuffernd_vel.diminfo[0].shape’ was declared here
2024-01-09T12:33:00,142   10088 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-01-09T12:33:00,143         |                     ^~~~~~~~~~~~~~~~~~~~
2024-01-09T12:33:00,148   moleculekit/fileformats/xtc/trr.c:11872:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-01-09T12:33:00,149   11872 |       } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_xyz_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-01-09T12:33:00,149         |                 ^
2024-01-09T12:33:00,158   moleculekit/fileformats/xtc/trr.c:10094:21: note: ‘__pyx_pybuffernd_xyz_buffer.diminfo[1].shape’ was declared here
2024-01-09T12:33:00,159   10094 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_xyz_buffer;
2024-01-09T12:33:00,159         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-01-09T12:33:00,169   moleculekit/fileformats/xtc/trr.c:11868:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-01-09T12:33:00,170   11868 |       } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_xyz_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-01-09T12:33:00,171         |                 ^
2024-01-09T12:33:00,180   moleculekit/fileformats/xtc/trr.c:10094:21: note: ‘__pyx_pybuffernd_xyz_buffer.diminfo[0].shape’ was declared here
2024-01-09T12:33:00,180   10094 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_xyz_buffer;
2024-01-09T12:33:00,181         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-01-09T12:33:00,191   moleculekit/fileformats/xtc/trr.c:11713:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-01-09T12:33:00,191   11713 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_vel_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-01-09T12:33:00,192         |                   ^
2024-01-09T12:33:00,201   moleculekit/fileformats/xtc/trr.c:10090:21: note: ‘__pyx_pybuffernd_vel_buffer.diminfo[1].shape’ was declared here
2024-01-09T12:33:00,201   10090 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel_buffer;
2024-01-09T12:33:00,202         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-01-09T12:33:00,212   moleculekit/fileformats/xtc/trr.c:11709:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-01-09T12:33:00,212   11709 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_vel_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-01-09T12:33:00,213         |                   ^
2024-01-09T12:33:00,222   moleculekit/fileformats/xtc/trr.c:10090:21: note: ‘__pyx_pybuffernd_vel_buffer.diminfo[0].shape’ was declared here
2024-01-09T12:33:00,222   10090 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel_buffer;
2024-01-09T12:33:00,223         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-01-09T12:33:00,233   moleculekit/fileformats/xtc/trr.c:11765:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-01-09T12:33:00,233   11765 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_forces_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-01-09T12:33:00,234         |                   ^
2024-01-09T12:33:00,243   moleculekit/fileformats/xtc/trr.c:10074:21: note: ‘__pyx_pybuffernd_forces_buffer.diminfo[1].shape’ was declared here
2024-01-09T12:33:00,243   10074 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces_buffer;
2024-01-09T12:33:00,244         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-01-09T12:33:00,254   moleculekit/fileformats/xtc/trr.c:11761:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-01-09T12:33:00,254   11761 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_forces_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-01-09T12:33:00,255         |                   ^
2024-01-09T12:33:00,264   moleculekit/fileformats/xtc/trr.c:10074:21: note: ‘__pyx_pybuffernd_forces_buffer.diminfo[0].shape’ was declared here
2024-01-09T12:33:00,265   10074 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces_buffer;
2024-01-09T12:33:00,266         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-01-09T12:33:06,857   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdr_seek.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_trr.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trr.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/trr.cpython-311-arm-linux-gnueabihf.so
2024-01-09T12:33:07,018   building 'moleculekit.dcd' extension
2024-01-09T12:33:07,019   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-01-09T12:33:07,020   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src
2024-01-09T12:33:07,021   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/dcd/dcd.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcd.o
2024-01-09T12:33:07,415   In file included from /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-01-09T12:33:07,416                    from /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-01-09T12:33:07,417                    from /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-01-09T12:33:07,417                    from moleculekit/fileformats/dcd/dcd.c:1221:
2024-01-09T12:33:07,418   /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-01-09T12:33:07,418      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-01-09T12:33:07,419         |  ^~~~~~~
2024-01-09T12:33:08,702   In file included from moleculekit/fileformats/dcd/include/dcdplugin.h:1,
2024-01-09T12:33:08,703                    from moleculekit/fileformats/dcd/dcd.c:1227:
2024-01-09T12:33:08,704   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-01-09T12:33:08,704     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-01-09T12:33:08,705         |            ^~~~~~~~~~~~~
2024-01-09T12:33:08,706   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-01-09T12:33:08,707     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-01-09T12:33:08,707         |            ^~~~~~~~~~~~~~
2024-01-09T12:33:08,708   moleculekit/fileformats/dcd/include/fastio.h:466:12: warning: ‘fio_write_int32’ defined but not used [-Wunused-function]
2024-01-09T12:33:08,708     466 | static int fio_write_int32(fio_fd fd, int i) {
2024-01-09T12:33:08,709         |            ^~~~~~~~~~~~~~~
2024-01-09T12:33:08,710   moleculekit/fileformats/dcd/include/fastio.h:457:19: warning: ‘fio_ftell’ defined but not used [-Wunused-function]
2024-01-09T12:33:08,710     457 | static fio_size_t fio_ftell(fio_fd fd) {
2024-01-09T12:33:08,711         |                   ^~~~~~~~~
2024-01-09T12:33:08,712   moleculekit/fileformats/dcd/include/fastio.h:450:19: warning: ‘fio_fseek’ defined but not used [-Wunused-function]
2024-01-09T12:33:08,713     450 | static fio_size_t fio_fseek(fio_fd fd, fio_size_t offset, int whence) {
2024-01-09T12:33:08,714         |                   ^~~~~~~~~
2024-01-09T12:33:08,715   moleculekit/fileformats/dcd/include/fastio.h:415:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
2024-01-09T12:33:08,716     415 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
2024-01-09T12:33:08,716         |                   ^~~~~~~~~
2024-01-09T12:33:08,717   moleculekit/fileformats/dcd/include/fastio.h:394:12: warning: ‘fio_fclose’ defined but not used [-Wunused-function]
2024-01-09T12:33:08,718     394 | static int fio_fclose(fio_fd fd) {
2024-01-09T12:33:08,718         |            ^~~~~~~~~~
2024-01-09T12:33:08,719   moleculekit/fileformats/dcd/include/fastio.h:366:12: warning: ‘fio_open’ defined but not used [-Wunused-function]
2024-01-09T12:33:08,719     366 | static int fio_open(const char *filename, int mode, fio_fd *fd) {
2024-01-09T12:33:08,720         |            ^~~~~~~~
2024-01-09T12:33:23,150   moleculekit/fileformats/dcd/dcd.c: In function ‘__pyx_pf_11moleculekit_3dcd_17DCDTrajectoryFile_18read’:
2024-01-09T12:33:23,151   moleculekit/fileformats/dcd/dcd.c:1123:40: warning: ‘__pyx_v_i’ may be used uninitialized [-Wmaybe-uninitialized]
2024-01-09T12:33:23,152    1123 |   #define PyInt_FromLong               PyLong_FromLong
2024-01-09T12:33:23,152         |                                        ^~~~~~~~~~~~~~~
2024-01-09T12:33:23,159   moleculekit/fileformats/dcd/dcd.c:8003:7: note: ‘__pyx_v_i’ was declared here
2024-01-09T12:33:23,159    8003 |   int __pyx_v_i;
2024-01-09T12:33:23,160         |       ^~~~~~~~~
2024-01-09T12:33:26,527   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/dcd/src/dcdplugin.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src/dcdplugin.o
2024-01-09T12:33:26,751   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdheader’:
2024-01-09T12:33:26,752   moleculekit/fileformats/dcd/src/dcdplugin.c:150:55: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-09T12:33:26,753     150 |   else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-01-09T12:33:26,754         |                                                       ^~
2024-01-09T12:33:26,754   moleculekit/fileformats/dcd/src/dcdplugin.c:173:54: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-09T12:33:26,755     173 |       if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-01-09T12:33:26,756         |                                                      ^~
2024-01-09T12:33:26,757   moleculekit/fileformats/dcd/src/dcdplugin.c:194:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-09T12:33:26,757     194 |     if (input_integer[0] != dcdcordmagic)
2024-01-09T12:33:26,758         |                          ^~
2024-01-09T12:33:26,761   moleculekit/fileformats/dcd/src/dcdplugin.c:409:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-09T12:33:26,762     409 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-01-09T12:33:26,763         |                                               ^~
2024-01-09T12:33:26,764   moleculekit/fileformats/dcd/src/dcdplugin.c:428:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-09T12:33:26,764     428 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-01-09T12:33:26,765         |                                               ^~
2024-01-09T12:33:26,770   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdstep’:
2024-01-09T12:33:26,771   moleculekit/fileformats/dcd/src/dcdplugin.c:651:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-09T12:33:26,771     651 |         if (tmpbuf[i] != sizeof(float) * N)
2024-01-09T12:33:26,772         |                       ^~
2024-01-09T12:33:26,772   moleculekit/fileformats/dcd/src/dcdplugin.c:659:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-09T12:33:26,773     659 |         if ((tmpbuf[2 * i] + tmpbuf[2 * i + 1]) != sizeof(float) * N)
2024-01-09T12:33:26,773         |                                                 ^~
2024-01-09T12:33:26,801   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:55:
2024-01-09T12:33:26,802   moleculekit/fileformats/dcd/include/endianswap.h: At top level:
2024-01-09T12:33:26,802   moleculekit/fileformats/dcd/include/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
2024-01-09T12:33:26,803      96 | static void swap2_aligned(void *v, long ndata) {
2024-01-09T12:33:26,803         |             ^~~~~~~~~~~~~
2024-01-09T12:33:26,804   moleculekit/fileformats/dcd/include/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
2024-01-09T12:33:26,804      32 | static void swap2_unaligned(void *v, long ndata) {
2024-01-09T12:33:26,805         |             ^~~~~~~~~~~~~~~
2024-01-09T12:33:26,805   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:46:
2024-01-09T12:33:26,806   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-01-09T12:33:26,806     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-01-09T12:33:26,807         |            ^~~~~~~~~~~~~
2024-01-09T12:33:26,808   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-01-09T12:33:26,808     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-01-09T12:33:26,809         |            ^~~~~~~~~~~~~~
2024-01-09T12:33:28,089   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcd.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src/dcdplugin.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/dcd.cpython-311-arm-linux-gnueabihf.so
2024-01-09T12:33:28,218   building 'moleculekit.binpos' extension
2024-01-09T12:33:28,219   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-01-09T12:33:28,220   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src
2024-01-09T12:33:28,221   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/binpos/binpos.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binpos.o
2024-01-09T12:33:28,623   In file included from /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-01-09T12:33:28,623                    from /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-01-09T12:33:28,624                    from /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-01-09T12:33:28,624                    from moleculekit/fileformats/binpos/binpos.c:1221:
2024-01-09T12:33:28,625   /tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-01-09T12:33:28,626      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-01-09T12:33:28,627         |  ^~~~~~~
2024-01-09T12:33:43,234   In function ‘__pyx_pf_11moleculekit_6binpos_20BINPOSTrajectoryFile_6_read’,
2024-01-09T12:33:43,235       inlined from ‘__pyx_pw_11moleculekit_6binpos_20BINPOSTrajectoryFile_7_read’ at moleculekit/fileformats/binpos/binpos.c:7485:13:
2024-01-09T12:33:43,242   moleculekit/fileformats/binpos/binpos.c:8026:6: warning: ‘__pyx_v_status’ may be used uninitialized [-Wmaybe-uninitialized]
2024-01-09T12:33:43,242    8026 |   if (__pyx_t_1) {
2024-01-09T12:33:43,243         |      ^
2024-01-09T12:33:43,244   moleculekit/fileformats/binpos/binpos.c: In function ‘__pyx_pw_11moleculekit_6binpos_20BINPOSTrajectoryFile_7_read’:
2024-01-09T12:33:43,249   moleculekit/fileformats/binpos/binpos.c:7503:7: note: ‘__pyx_v_status’ was declared here
2024-01-09T12:33:43,249    7503 |   int __pyx_v_status;
2024-01-09T12:33:43,250         |       ^~~~~~~~~~~~~~
2024-01-09T12:33:43,251   moleculekit/fileformats/binpos/binpos.c:1123:40: warning: ‘__pyx_v_i’ may be used uninitialized [-Wmaybe-uninitialized]
2024-01-09T12:33:43,251    1123 |   #define PyInt_FromLong               PyLong_FromLong
2024-01-09T12:33:43,252         |                                        ^~~~~~~~~~~~~~~
2024-01-09T12:33:43,258   moleculekit/fileformats/binpos/binpos.c:7500:7: note: ‘__pyx_v_i’ was declared here
2024-01-09T12:33:43,258    7500 |   int __pyx_v_i;
2024-01-09T12:33:43,259         |       ^~~~~~~~~
2024-01-09T12:33:46,734   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/binpos/src/binposplugin.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src/binposplugin.o
2024-01-09T12:33:47,070   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binpos.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src/binposplugin.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/binpos.cpython-311-arm-linux-gnueabihf.so
2024-01-09T12:33:47,194   building 'moleculekit.tmalign' extension
2024-01-09T12:33:47,195   creating build/temp.linux-armv7l-cpython-311/moleculekit/tmalign
2024-01-09T12:33:47,195   creating build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src
2024-01-09T12:33:47,197   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.o -w
2024-01-09T12:34:21,183   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-9hwhr2lb/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.o -w
2024-01-09T12:34:43,684   In file included from /usr/include/c++/12/vector:70,
2024-01-09T12:34:43,684                    from moleculekit/tmalign/tmalign_util.cpp:1245:
2024-01-09T12:34:43,685   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2024-01-09T12:34:43,686   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2024-01-09T12:34:43,686     439 |       vector<_Tp, _Alloc>::
2024-01-09T12:34:43,687         |       ^~~~~~~~~~~~~~~~~~~
2024-01-09T12:34:44,491   In file included from /usr/include/c++/12/vector:64:
2024-01-09T12:34:44,492   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2024-01-09T12:34:44,492       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20760:32,
2024-01-09T12:34:44,493       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20245:52:
2024-01-09T12:34:44,493   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-01-09T12:34:44,494    1287 |           _M_realloc_insert(end(), __x);
2024-01-09T12:34:44,494         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-01-09T12:34:44,495   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2024-01-09T12:34:44,495       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20774:33,
2024-01-09T12:34:44,496       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20245:52:
2024-01-09T12:34:44,497   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-01-09T12:34:44,498    1287 |           _M_realloc_insert(end(), __x);
2024-01-09T12:34:44,498         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-01-09T12:34:44,499   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2024-01-09T12:34:44,500       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20859:34,
2024-01-09T12:34:44,500       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20245:52:
2024-01-09T12:34:44,501   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-01-09T12:34:44,502    1287 |           _M_realloc_insert(end(), __x);
2024-01-09T12:34:44,502         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-01-09T12:34:46,868   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so
2024-01-09T12:34:47,254   UPDATING build/lib.linux-armv7l-cpython-311/moleculekit/_version.py
2024-01-09T12:34:47,255   set build/lib.linux-armv7l-cpython-311/moleculekit/_version.py to '1.8.18'
2024-01-09T12:34:47,255   installing to build/bdist.linux-armv7l/wheel
2024-01-09T12:34:47,256   running install
2024-01-09T12:34:47,278   running install_lib
2024-01-09T12:34:47,283   creating build/bdist.linux-armv7l
2024-01-09T12:34:47,284   creating build/bdist.linux-armv7l/wheel
2024-01-09T12:34:47,286   creating build/bdist.linux-armv7l/wheel/moleculekit
2024-01-09T12:34:47,288   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-01-09T12:34:47,289   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-01-09T12:34:47,290   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-01-09T12:34:47,292   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-01-09T12:34:47,295   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-01-09T12:34:47,297   copying build/lib.linux-armv7l-cpython-311/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-09T12:34:47,300   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-01-09T12:34:47,301   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-01-09T12:34:47,302   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-01-09T12:34:47,304   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-01-09T12:34:47,307   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-01-09T12:34:47,309   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-01-09T12:34:47,311   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-01-09T12:34:47,314   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-01-09T12:34:47,316   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/modelling.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-01-09T12:34:47,318   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-01-09T12:34:47,320   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-01-09T12:34:47,323   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-01-09T12:34:47,325   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-01-09T12:34:47,327   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-01-09T12:34:47,330   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-01-09T12:34:47,332   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-01-09T12:34:47,335   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-01-09T12:34:47,337   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-01-09T12:34:47,341   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2024-01-09T12:34:47,342   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-01-09T12:34:47,344   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-01-09T12:34:47,346   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-01-09T12:34:47,556   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-01-09T12:34:47,558   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-01-09T12:34:47,560   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2024-01-09T12:34:47,564   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,565   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,567   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,570   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,572   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,573   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,575   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,577   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,580   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,582   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,584   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,586   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,588   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,591   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,593   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,595   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,597   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,599   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,601   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,603   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,605   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,607   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,609   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,611   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,613   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,615   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,618   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,620   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,622   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,624   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,626   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,628   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,630   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,632   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,635   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,637   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,639   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,641   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,643   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,645   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,648   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,650   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,652   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,654   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,657   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,659   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,661   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,663   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,666   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,668   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,670   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,672   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,675   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,677   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,680   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,682   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,684   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,686   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,689   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-01-09T12:34:47,693   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,695   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,698   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-01-09T12:34:47,702   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,705   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,707   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-01-09T12:34:47,714   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,716   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,718   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,720   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-01-09T12:34:47,724   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,726   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,728   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-01-09T12:34:47,736   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,738   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-01-09T12:34:47,745   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,747   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-01-09T12:34:47,760   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-01-09T12:34:47,765   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-01-09T12:34:47,770   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,772   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,775   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,777   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,779   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,781   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,783   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,786   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,788   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,791   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,793   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,795   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,797   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,799   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,802   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,804   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,806   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,809   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,811   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,813   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,815   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,817   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,819   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,821   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,823   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,825   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,827   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,829   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,831   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,833   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,835   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,838   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,840   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,842   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,844   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,846   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,849   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,851   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,853   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,855   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,858   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,860   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,862   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,864   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,866   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,868   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,870   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,873   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,875   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,877   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,879   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,881   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,883   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,886   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,888   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,890   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,892   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,894   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,897   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,899   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,901   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,903   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,906   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,908   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,910   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,913   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,915   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,917   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,919   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,921   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,923   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,925   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,928   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,930   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,932   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,934   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,936   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,938   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,940   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,942   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,944   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,946   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-09T12:34:47,949   copying build/lib.linux-armv7l-cpython-311/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-09T12:34:47,952   copying build/lib.linux-armv7l-cpython-311/moleculekit/dcd.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-09T12:34:47,964   copying build/lib.linux-armv7l-cpython-311/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-09T12:34:47,966   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-09T12:34:47,969   copying build/lib.linux-armv7l-cpython-311/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-09T12:34:47,972   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-09T12:34:47,990   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-09T12:34:47,992   copying build/lib.linux-armv7l-cpython-311/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-09T12:34:47,995   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-01-09T12:34:47,996   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-01-09T12:34:48,018   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-01-09T12:34:48,021   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-01-09T12:34:48,023   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-01-09T12:34:48,024   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-01-09T12:34:48,027   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-01-09T12:34:48,028   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-01-09T12:34:48,031   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-01-09T12:34:48,034   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-01-09T12:34:48,035   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-01-09T12:34:48,038   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-01-09T12:34:48,041   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-01-09T12:34:48,044   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-01-09T12:34:48,047   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-01-09T12:34:48,048   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-01-09T12:34:48,050   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-01-09T12:34:48,053   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-01-09T12:34:48,054   copying build/lib.linux-armv7l-cpython-311/moleculekit/trr.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-09T12:34:48,078   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-01-09T12:34:48,080   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-01-09T12:34:48,083   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-01-09T12:34:48,085   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-01-09T12:34:48,088   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-01-09T12:34:48,091   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-01-09T12:34:48,094   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-01-09T12:34:48,097   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-01-09T12:34:48,100   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-01-09T12:34:48,102   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-01-09T12:34:48,104   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-01-09T12:34:48,107   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-01-09T12:34:48,110   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-01-09T12:34:48,113   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-01-09T12:34:48,115   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-01-09T12:34:48,118   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-01-09T12:34:48,120   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-09T12:34:48,147   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-01-09T12:34:48,148   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-01-09T12:34:48,151   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-01-09T12:34:48,173   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-09T12:34:48,196   copying build/lib.linux-armv7l-cpython-311/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-09T12:34:48,199   copying build/lib.linux-armv7l-cpython-311/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-09T12:34:48,202   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-01-09T12:34:48,203   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-01-09T12:34:48,206   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-01-09T12:34:48,208   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-01-09T12:34:48,212   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-09T12:34:48,228   copying build/lib.linux-armv7l-cpython-311/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-09T12:34:48,230   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-09T12:34:48,232   copying build/lib.linux-armv7l-cpython-311/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-09T12:34:48,235   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-01-09T12:34:48,236   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-01-09T12:34:48,239   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-01-09T12:34:48,240   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-01-09T12:34:48,246   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-01-09T12:34:48,248   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-01-09T12:34:48,249   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-01-09T12:34:48,251   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-01-09T12:34:48,274   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-09T12:34:48,293   copying build/lib.linux-armv7l-cpython-311/moleculekit/binpos.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-09T12:34:48,304   copying build/lib.linux-armv7l-cpython-311/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-09T12:34:48,306   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-09T12:34:48,308   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-09T12:34:48,333   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-01-09T12:34:48,334   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-01-09T12:34:48,336   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-01-09T12:34:48,355   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-01-09T12:34:48,356   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-01-09T12:34:48,359   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-01-09T12:34:48,379   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-01-09T12:34:48,380   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-01-09T12:34:48,403   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-01-09T12:34:48,406   copying build/lib.linux-armv7l-cpython-311/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-09T12:34:48,408   copying build/lib.linux-armv7l-cpython-311/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-09T12:34:48,410   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-01-09T12:34:48,411   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/netcdf.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-01-09T12:34:48,415   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-01-09T12:34:48,416   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binpos.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-01-09T12:34:48,419   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-01-09T12:34:48,420   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src/binposplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-01-09T12:34:48,423   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-01-09T12:34:48,424   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include/binposplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-01-09T12:34:48,426   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-01-09T12:34:48,429   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-01-09T12:34:48,431   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binposlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-01-09T12:34:48,433   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binpos.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-01-09T12:34:48,451   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-01-09T12:34:48,453   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/utils.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-01-09T12:34:48,456   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-01-09T12:34:48,457   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-01-09T12:34:48,460   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trr.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-01-09T12:34:48,463   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-01-09T12:34:48,466   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-01-09T12:34:48,467   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-01-09T12:34:48,470   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-01-09T12:34:48,473   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdr_seek.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-01-09T12:34:48,475   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-01-09T12:34:48,478   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-01-09T12:34:48,482   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-01-09T12:34:48,529   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-01-09T12:34:48,553   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xdrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-01-09T12:34:48,555   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-01-09T12:34:48,557   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-01-09T12:34:48,559   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-01-09T12:34:48,560   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/trr_header.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-01-09T12:34:48,562   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-01-09T12:34:48,565   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-01-09T12:34:48,567   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xdr_seek.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-01-09T12:34:48,568   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-01-09T12:34:48,570   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-01-09T12:34:48,572   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-01-09T12:34:48,573   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src/dcdplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-01-09T12:34:48,576   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcd.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-01-09T12:34:48,579   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-01-09T12:34:48,579   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/endianswap.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-01-09T12:34:48,582   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/fastio.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-01-09T12:34:48,584   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/dcdplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-01-09T12:34:48,586   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-01-09T12:34:48,589   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-01-09T12:34:48,591   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcd.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-01-09T12:34:48,606   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcdlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-01-09T12:34:48,609   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-01-09T12:34:48,610   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-01-09T12:34:48,634   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-01-09T12:34:48,655   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-01-09T12:34:48,656   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-01-09T12:34:48,675   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-01-09T12:34:48,678   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-01-09T12:34:48,679   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-01-09T12:34:48,705   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-01-09T12:34:48,708   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-01-09T12:34:48,709   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-01-09T12:34:48,729   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-01-09T12:34:48,732   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-01-09T12:34:48,735   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-01-09T12:34:48,755   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-01-09T12:34:48,758   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-01-09T12:34:48,758   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-01-09T12:34:48,761   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-01-09T12:34:48,780   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-01-09T12:34:48,807   copying build/lib.linux-armv7l-cpython-311/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-09T12:34:48,810   copying build/lib.linux-armv7l-cpython-311/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-09T12:34:48,814   copying build/lib.linux-armv7l-cpython-311/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-09T12:34:48,816   copying build/lib.linux-armv7l-cpython-311/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-09T12:34:48,818   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-09T12:34:48,820   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-09T12:34:48,877   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-01-09T12:34:48,878   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-01-09T12:34:48,879   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-01-09T12:34:48,881   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-01-09T12:34:48,883   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-01-09T12:34:48,886   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-01-09T12:34:48,888   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-01-09T12:34:48,890   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-01-09T12:34:48,893   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-01-09T12:34:48,895   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-01-09T12:34:48,896   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-01-09T12:34:48,899   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-01-09T12:34:48,901   copying build/lib.linux-armv7l-cpython-311/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-09T12:34:48,904   copying build/lib.linux-armv7l-cpython-311/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-09T12:34:48,908   running install_egg_info
2024-01-09T12:34:48,913   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.8.18-py3.11.egg-info
2024-01-09T12:34:48,926   running install_scripts
2024-01-09T12:34:48,977   creating build/bdist.linux-armv7l/wheel/moleculekit-1.8.18.dist-info/WHEEL
2024-01-09T12:34:48,980   creating '/tmp/pip-wheel-rtbhaf1y/.tmp-ulg92lqj/moleculekit-1.8.18-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-01-09T12:34:48,983   adding 'moleculekit/__init__.py'
2024-01-09T12:34:48,984   adding 'moleculekit/_version.py'
2024-01-09T12:34:48,986   adding 'moleculekit/align.py'
2024-01-09T12:34:49,304   adding 'moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so'
2024-01-09T12:34:49,462   adding 'moleculekit/binpos.cpython-311-arm-linux-gnueabihf.so'
2024-01-09T12:34:49,468   adding 'moleculekit/bondguesser.py'
2024-01-09T12:34:49,710   adding 'moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so'
2024-01-09T12:34:49,718   adding 'moleculekit/config.py'
2024-01-09T12:34:49,872   adding 'moleculekit/dcd.cpython-311-arm-linux-gnueabihf.so'
2024-01-09T12:34:49,878   adding 'moleculekit/dihedral.py'
2024-01-09T12:34:49,879   adding 'moleculekit/distance.py'
2024-01-09T12:34:50,189   adding 'moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so'
2024-01-09T12:34:50,200   adding 'moleculekit/home.py'
2024-01-09T12:34:50,201   adding 'moleculekit/logging.ini'
2024-01-09T12:34:50,215   adding 'moleculekit/molecule.py'
2024-01-09T12:34:50,443   adding 'moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so'
2024-01-09T12:34:50,452   adding 'moleculekit/opm.py'
2024-01-09T12:34:50,454   adding 'moleculekit/periodictable.py'
2024-01-09T12:34:50,455   adding 'moleculekit/pymolgraphics.py'
2024-01-09T12:34:50,456   adding 'moleculekit/rcsb.py'
2024-01-09T12:34:50,458   adding 'moleculekit/rdkitintegration.py'
2024-01-09T12:34:50,471   adding 'moleculekit/readers.py'
2024-01-09T12:34:51,066   adding 'moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so'
2024-01-09T12:34:51,368   adding 'moleculekit/trr.cpython-311-arm-linux-gnueabihf.so'
2024-01-09T12:34:51,380   adding 'moleculekit/util.py'
2024-01-09T12:34:51,381   adding 'moleculekit/version.py'
2024-01-09T12:34:51,383   adding 'moleculekit/viewer.py'
2024-01-09T12:34:51,384   adding 'moleculekit/vmd_wrapper'
2024-01-09T12:34:51,386   adding 'moleculekit/vmdgraphics.py'
2024-01-09T12:34:51,388   adding 'moleculekit/vmdviewer.py'
2024-01-09T12:34:51,640   adding 'moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so'
2024-01-09T12:34:51,654   adding 'moleculekit/writers.py'
2024-01-09T12:34:51,914   adding 'moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so'
2024-01-09T12:34:51,923   adding 'moleculekit/atomselect/__init__.py'
2024-01-09T12:34:51,925   adding 'moleculekit/atomselect/analyze.py'
2024-01-09T12:34:51,927   adding 'moleculekit/atomselect/atomselect.py'
2024-01-09T12:34:51,929   adding 'moleculekit/atomselect/languageparser.py'
2024-01-09T12:34:52,032   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2024-01-09T12:34:52,043   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2024-01-09T12:34:52,133   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2024-01-09T12:34:52,142   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2024-01-09T12:34:52,242   adding 'moleculekit/distance_utils/distance_utils.cpp'
2024-01-09T12:34:52,252   adding 'moleculekit/distance_utils/distance_utils.pyx'
2024-01-09T12:34:52,254   adding 'moleculekit/fileformats/__init__.py'
2024-01-09T12:34:52,259   adding 'moleculekit/fileformats/netcdf.py'
2024-01-09T12:34:52,261   adding 'moleculekit/fileformats/utils.py'
2024-01-09T12:34:52,321   adding 'moleculekit/fileformats/binpos/binpos.c'
2024-01-09T12:34:52,329   adding 'moleculekit/fileformats/binpos/binpos.pyx'
2024-01-09T12:34:52,330   adding 'moleculekit/fileformats/binpos/binposlib.pxd'
2024-01-09T12:34:52,332   adding 'moleculekit/fileformats/binpos/include/binposplugin.h'
2024-01-09T12:34:52,333   adding 'moleculekit/fileformats/binpos/include/largefiles.h'
2024-01-09T12:34:52,339   adding 'moleculekit/fileformats/binpos/include/molfile_plugin.h'
2024-01-09T12:34:52,341   adding 'moleculekit/fileformats/binpos/src/binposplugin.c'
2024-01-09T12:34:52,403   adding 'moleculekit/fileformats/dcd/dcd.c'
2024-01-09T12:34:52,411   adding 'moleculekit/fileformats/dcd/dcd.pyx'
2024-01-09T12:34:52,413   adding 'moleculekit/fileformats/dcd/dcdlib.pxd'
2024-01-09T12:34:52,415   adding 'moleculekit/fileformats/dcd/include/dcdplugin.h'
2024-01-09T12:34:52,416   adding 'moleculekit/fileformats/dcd/include/endianswap.h'
2024-01-09T12:34:52,418   adding 'moleculekit/fileformats/dcd/include/fastio.h'
2024-01-09T12:34:52,419   adding 'moleculekit/fileformats/dcd/include/largefiles.h'
2024-01-09T12:34:52,424   adding 'moleculekit/fileformats/dcd/include/molfile_plugin.h'
2024-01-09T12:34:52,430   adding 'moleculekit/fileformats/dcd/src/dcdplugin.c'
2024-01-09T12:34:52,523   adding 'moleculekit/fileformats/xtc/trr.c'
2024-01-09T12:34:52,535   adding 'moleculekit/fileformats/xtc/trr.pyx'
2024-01-09T12:34:52,536   adding 'moleculekit/fileformats/xtc/trrlib.pxd'
2024-01-09T12:34:52,537   adding 'moleculekit/fileformats/xtc/xdrlib.pxd'
2024-01-09T12:34:52,625   adding 'moleculekit/fileformats/xtc/xtc.cpp'
2024-01-09T12:34:52,634   adding 'moleculekit/fileformats/xtc/xtc.pyx'
2024-01-09T12:34:52,635   adding 'moleculekit/fileformats/xtc/xtclib.pxd'
2024-01-09T12:34:52,637   adding 'moleculekit/fileformats/xtc/include/trr_header.h'
2024-01-09T12:34:52,638   adding 'moleculekit/fileformats/xtc/include/xdr_seek.h'
2024-01-09T12:34:52,641   adding 'moleculekit/fileformats/xtc/include/xdrfile.h'
2024-01-09T12:34:52,642   adding 'moleculekit/fileformats/xtc/include/xdrfile_trr.h'
2024-01-09T12:34:52,643   adding 'moleculekit/fileformats/xtc/include/xdrfile_xtc.h'
2024-01-09T12:34:52,645   adding 'moleculekit/fileformats/xtc/include/xtc.h'
2024-01-09T12:34:52,646   adding 'moleculekit/fileformats/xtc/src/xdr_seek.c'
2024-01-09T12:34:52,653   adding 'moleculekit/fileformats/xtc/src/xdrfile.cpp'
2024-01-09T12:34:52,655   adding 'moleculekit/fileformats/xtc/src/xdrfile_trr.c'
2024-01-09T12:34:52,657   adding 'moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp'
2024-01-09T12:34:52,659   adding 'moleculekit/fileformats/xtc/src/xtc.cpp'
2024-01-09T12:34:52,661   adding 'moleculekit/interactions/__init__.py'
2024-01-09T12:34:52,939   adding 'moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so'
2024-01-09T12:34:53,203   adding 'moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so'
2024-01-09T12:34:53,215   adding 'moleculekit/interactions/interactions.py'
2024-01-09T12:34:53,491   adding 'moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so'
2024-01-09T12:34:53,773   adding 'moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so'
2024-01-09T12:34:53,872   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2024-01-09T12:34:53,881   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2024-01-09T12:34:53,971   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2024-01-09T12:34:53,980   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2024-01-09T12:34:54,071   adding 'moleculekit/interactions/pipi/pipi.cpp'
2024-01-09T12:34:54,080   adding 'moleculekit/interactions/pipi/pipi.pyx'
2024-01-09T12:34:54,170   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2024-01-09T12:34:54,179   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2024-01-09T12:34:54,265   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2024-01-09T12:34:54,274   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2024-01-09T12:34:54,275   adding 'moleculekit/pdbx/__init__.py'
2024-01-09T12:34:54,279   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2024-01-09T12:34:54,281   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2024-01-09T12:34:54,283   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2024-01-09T12:34:54,284   adding 'moleculekit/pdbx/reader/__init__.py'
2024-01-09T12:34:54,286   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2024-01-09T12:34:54,288   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2024-01-09T12:34:54,289   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2024-01-09T12:34:54,291   adding 'moleculekit/pdbx/tests/__init__.py'
2024-01-09T12:34:54,292   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2024-01-09T12:34:54,294   adding 'moleculekit/pdbx/writer/__init__.py'
2024-01-09T12:34:54,295   adding 'moleculekit/ply/__init__.py'
2024-01-09T12:34:54,299   adding 'moleculekit/ply/lex.py'
2024-01-09T12:34:54,311   adding 'moleculekit/ply/yacc.py'
2024-01-09T12:34:54,313   adding 'moleculekit/projections/__init__.py'
2024-01-09T12:34:54,315   adding 'moleculekit/projections/metriccoordinate.py'
2024-01-09T12:34:54,318   adding 'moleculekit/projections/metricdihedral.py'
2024-01-09T12:34:54,322   adding 'moleculekit/projections/metricdistance.py'
2024-01-09T12:34:54,324   adding 'moleculekit/projections/metricfluctuation.py'
2024-01-09T12:34:54,325   adding 'moleculekit/projections/metricgyration.py'
2024-01-09T12:34:54,329   adding 'moleculekit/projections/metricplumed2.py'
2024-01-09T12:34:54,331   adding 'moleculekit/projections/metricrmsd.py'
2024-01-09T12:34:54,333   adding 'moleculekit/projections/metricsasa.py'
2024-01-09T12:34:54,335   adding 'moleculekit/projections/metricsecondarystructure.py'
2024-01-09T12:34:54,336   adding 'moleculekit/projections/metricshell.py'
2024-01-09T12:34:54,338   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2024-01-09T12:34:54,340   adding 'moleculekit/projections/metrictmscore.py'
2024-01-09T12:34:54,341   adding 'moleculekit/projections/projection.py'
2024-01-09T12:34:54,342   adding 'moleculekit/projections/util.py'
2024-01-09T12:34:54,344   adding 'moleculekit/share/ALA.cif'
2024-01-09T12:34:54,346   adding 'moleculekit/share/backbone.cif'
2024-01-09T12:34:55,642   adding 'moleculekit/share/opm_sequences.json'
2024-01-09T12:34:55,727   adding 'moleculekit/share/atomselect/atomselect.json'
2024-01-09T12:34:55,732   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2024-01-09T12:34:55,733   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2024-01-09T12:34:55,734   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2024-01-09T12:34:55,736   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2024-01-09T12:34:55,737   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2024-01-09T12:34:55,738   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2024-01-09T12:34:55,740   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2024-01-09T12:34:55,741   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2024-01-09T12:34:55,742   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2024-01-09T12:34:55,743   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2024-01-09T12:34:55,745   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2024-01-09T12:34:55,746   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2024-01-09T12:34:55,747   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2024-01-09T12:34:55,748   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2024-01-09T12:34:55,750   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2024-01-09T12:34:55,751   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2024-01-09T12:34:55,752   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2024-01-09T12:34:55,753   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2024-01-09T12:34:55,754   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2024-01-09T12:34:55,756   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2024-01-09T12:34:55,757   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2024-01-09T12:34:55,758   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2024-01-09T12:34:55,759   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2024-01-09T12:34:55,760   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2024-01-09T12:34:55,762   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2024-01-09T12:34:55,763   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2024-01-09T12:34:55,764   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2024-01-09T12:34:55,765   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2024-01-09T12:34:55,766   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2024-01-09T12:34:55,768   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2024-01-09T12:34:55,769   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2024-01-09T12:34:55,770   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2024-01-09T12:34:55,771   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2024-01-09T12:34:55,772   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2024-01-09T12:34:55,774   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2024-01-09T12:34:55,775   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2024-01-09T12:34:55,776   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2024-01-09T12:34:55,777   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2024-01-09T12:34:55,778   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2024-01-09T12:34:55,779   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2024-01-09T12:34:55,781   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2024-01-09T12:34:55,782   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2024-01-09T12:34:55,783   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2024-01-09T12:34:55,785   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2024-01-09T12:34:55,786   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2024-01-09T12:34:55,787   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2024-01-09T12:34:55,788   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2024-01-09T12:34:55,789   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2024-01-09T12:34:55,791   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2024-01-09T12:34:55,792   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2024-01-09T12:34:55,793   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2024-01-09T12:34:55,794   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2024-01-09T12:34:55,796   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2024-01-09T12:34:55,797   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2024-01-09T12:34:55,798   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2024-01-09T12:34:55,799   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2024-01-09T12:34:55,800   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2024-01-09T12:34:55,802   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2024-01-09T12:34:55,803   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2024-01-09T12:34:55,804   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2024-01-09T12:34:55,805   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2024-01-09T12:34:55,806   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2024-01-09T12:34:55,808   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2024-01-09T12:34:55,809   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2024-01-09T12:34:55,810   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2024-01-09T12:34:55,811   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2024-01-09T12:34:55,813   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2024-01-09T12:34:55,814   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2024-01-09T12:34:55,815   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2024-01-09T12:34:55,816   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2024-01-09T12:34:55,817   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2024-01-09T12:34:55,818   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2024-01-09T12:34:55,819   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2024-01-09T12:34:55,820   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2024-01-09T12:34:55,822   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2024-01-09T12:34:55,823   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2024-01-09T12:34:55,824   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2024-01-09T12:34:55,825   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2024-01-09T12:34:55,826   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2024-01-09T12:34:55,827   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2024-01-09T12:34:55,829   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2024-01-09T12:34:55,830   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2024-01-09T12:34:55,831   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2024-01-09T12:34:55,832   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2024-01-09T12:34:55,833   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2024-01-09T12:34:55,834   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2024-01-09T12:34:55,836   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2024-01-09T12:34:55,837   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2024-01-09T12:34:55,838   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2024-01-09T12:34:55,839   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2024-01-09T12:34:55,840   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2024-01-09T12:34:55,841   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2024-01-09T12:34:55,843   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2024-01-09T12:34:55,844   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2024-01-09T12:34:55,845   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2024-01-09T12:34:55,846   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2024-01-09T12:34:55,847   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2024-01-09T12:34:55,848   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2024-01-09T12:34:55,850   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2024-01-09T12:34:55,851   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2024-01-09T12:34:55,852   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2024-01-09T12:34:55,853   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2024-01-09T12:34:55,855   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2024-01-09T12:34:55,856   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2024-01-09T12:34:55,857   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2024-01-09T12:34:55,858   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2024-01-09T12:34:55,860   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2024-01-09T12:34:55,861   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2024-01-09T12:34:55,862   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2024-01-09T12:34:55,863   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2024-01-09T12:34:55,865   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2024-01-09T12:34:55,866   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2024-01-09T12:34:55,867   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2024-01-09T12:34:55,868   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2024-01-09T12:34:55,869   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2024-01-09T12:34:55,871   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2024-01-09T12:34:55,872   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2024-01-09T12:34:55,873   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2024-01-09T12:34:55,874   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2024-01-09T12:34:55,876   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2024-01-09T12:34:55,877   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2024-01-09T12:34:55,878   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2024-01-09T12:34:55,879   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2024-01-09T12:34:55,880   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2024-01-09T12:34:55,881   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2024-01-09T12:34:55,882   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2024-01-09T12:34:55,883   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2024-01-09T12:34:55,884   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2024-01-09T12:34:55,886   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2024-01-09T12:34:55,887   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2024-01-09T12:34:55,888   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2024-01-09T12:34:55,889   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2024-01-09T12:34:55,890   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2024-01-09T12:34:55,891   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2024-01-09T12:34:55,893   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2024-01-09T12:34:55,894   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2024-01-09T12:34:55,895   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2024-01-09T12:34:55,896   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2024-01-09T12:34:55,897   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2024-01-09T12:34:55,898   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2024-01-09T12:34:55,899   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2024-01-09T12:34:55,901   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2024-01-09T12:34:55,902   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2024-01-09T12:34:55,903   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2024-01-09T12:34:55,904   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2024-01-09T12:34:55,905   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2024-01-09T12:34:55,906   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2024-01-09T12:34:55,907   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2024-01-09T12:34:55,909   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2024-01-09T12:34:55,910   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2024-01-09T12:34:55,911   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2024-01-09T12:34:55,912   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2024-01-09T12:34:55,914   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2024-01-09T12:34:55,915   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2024-01-09T12:34:55,916   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2024-01-09T12:34:55,917   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2024-01-09T12:34:55,919   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2024-01-09T12:34:55,920   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2024-01-09T12:34:55,921   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2024-01-09T12:34:55,922   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2024-01-09T12:34:55,924   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2024-01-09T12:34:55,925   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2024-01-09T12:34:55,926   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2024-01-09T12:34:55,927   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2024-01-09T12:34:55,928   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2024-01-09T12:34:55,929   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2024-01-09T12:34:55,931   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2024-01-09T12:34:55,932   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2024-01-09T12:34:55,933   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2024-01-09T12:34:55,934   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2024-01-09T12:34:55,936   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2024-01-09T12:34:55,937   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2024-01-09T12:34:55,938   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2024-01-09T12:34:55,939   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2024-01-09T12:34:55,940   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2024-01-09T12:34:55,942   adding 'moleculekit/smallmol/__init__.py'
2024-01-09T12:34:55,947   adding 'moleculekit/smallmol/smallmol.py'
2024-01-09T12:34:55,949   adding 'moleculekit/smallmol/smallmollib.py'
2024-01-09T12:34:55,951   adding 'moleculekit/smallmol/test_smallmol.py'
2024-01-09T12:34:55,952   adding 'moleculekit/smallmol/test_smallmollib.py'
2024-01-09T12:34:55,954   adding 'moleculekit/smallmol/util.py'
2024-01-09T12:34:55,956   adding 'moleculekit/smallmol/tools/__init__.py'
2024-01-09T12:34:55,958   adding 'moleculekit/smallmol/tools/clustering.py'
2024-01-09T12:34:55,960   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2024-01-09T12:34:55,961   adding 'moleculekit/smallmol/tools/test_tools.py'
2024-01-09T12:34:56,050   adding 'moleculekit/tmalign/tmalign_util.cpp'
2024-01-09T12:34:56,058   adding 'moleculekit/tmalign/tmalign_util.pyx'
2024-01-09T12:34:56,060   adding 'moleculekit/tmalign/tmalignlib.pxd'
2024-01-09T12:34:56,061   adding 'moleculekit/tmalign/include/TMAlign.h'
2024-01-09T12:34:56,078   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2024-01-09T12:34:56,081   adding 'moleculekit/tools/__init__.py'
2024-01-09T12:34:56,083   adding 'moleculekit/tools/atomtyper.py'
2024-01-09T12:34:56,085   adding 'moleculekit/tools/autosegment.py'
2024-01-09T12:34:56,087   adding 'moleculekit/tools/crystalpacking.py'
2024-01-09T12:34:56,091   adding 'moleculekit/tools/detect.py'
2024-01-09T12:34:56,093   adding 'moleculekit/tools/docking.py'
2024-01-09T12:34:56,094   adding 'moleculekit/tools/graphalignment.py'
2024-01-09T12:34:56,096   adding 'moleculekit/tools/hhblitsprofile.py'
2024-01-09T12:34:56,097   adding 'moleculekit/tools/modelling.py'
2024-01-09T12:34:56,099   adding 'moleculekit/tools/moleculechecks.py'
2024-01-09T12:34:56,105   adding 'moleculekit/tools/preparation.py'
2024-01-09T12:34:56,108   adding 'moleculekit/tools/preparation_customres.py'
2024-01-09T12:34:56,109   adding 'moleculekit/tools/sequencestructuralalignment.py'
2024-01-09T12:34:56,112   adding 'moleculekit/tools/voxeldescriptors.py'
2024-01-09T12:34:56,114   adding 'moleculekit/tools/obabel_tools/__init__.py'
2024-01-09T12:34:56,116   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2024-01-09T12:34:56,207   adding 'moleculekit/wrapping/wrapping.cpp'
2024-01-09T12:34:56,216   adding 'moleculekit/wrapping/wrapping.pyx'
2024-01-09T12:34:56,218   adding 'moleculekit-1.8.18.dist-info/LICENSE'
2024-01-09T12:34:56,219   adding 'moleculekit-1.8.18.dist-info/METADATA'
2024-01-09T12:34:56,220   adding 'moleculekit-1.8.18.dist-info/WHEEL'
2024-01-09T12:34:56,221   adding 'moleculekit-1.8.18.dist-info/top_level.txt'
2024-01-09T12:34:56,226   adding 'moleculekit-1.8.18.dist-info/RECORD'
2024-01-09T12:34:56,387   removing build/bdist.linux-armv7l/wheel
2024-01-09T12:34:56,684   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2024-01-09T12:34:56,979   Created wheel for moleculekit: filename=moleculekit-1.8.18-cp311-cp311-linux_armv7l.whl size=14582558 sha256=a966bd50ec01a5adea3abe3aa5940589b8a1d256398679c0fc3a358184c88855
2024-01-09T12:34:56,981   Stored in directory: /tmp/pip-ephem-wheel-cache-qbtu0ast/wheels/cd/65/c7/c3bca2f1adbecb4d84f037e57ede6bee8fa61be805cdfd0c5a
2024-01-09T12:34:57,006 Successfully built moleculekit
2024-01-09T12:34:57,345 Removed build tracker: '/tmp/pip-build-tracker-gqev8761'