2024-01-10T13:02:18,480 Created temporary directory: /tmp/pip-build-tracker-i9jt0als
2024-01-10T13:02:18,482 Initialized build tracking at /tmp/pip-build-tracker-i9jt0als
2024-01-10T13:02:18,482 Created build tracker: /tmp/pip-build-tracker-i9jt0als
2024-01-10T13:02:18,482 Entered build tracker: /tmp/pip-build-tracker-i9jt0als
2024-01-10T13:02:18,483 Created temporary directory: /tmp/pip-wheel-euesjtd3
2024-01-10T13:02:18,487 Created temporary directory: /tmp/pip-ephem-wheel-cache-w2c9_f_o
2024-01-10T13:02:18,510 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-01-10T13:02:18,514 2 location(s) to search for versions of moleculekit:
2024-01-10T13:02:18,514 * https://pypi.org/simple/moleculekit/
2024-01-10T13:02:18,514 * https://www.piwheels.org/simple/moleculekit/
2024-01-10T13:02:18,515 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2024-01-10T13:02:18,515 Getting page https://pypi.org/simple/moleculekit/
2024-01-10T13:02:18,516 Found index url https://pypi.org/simple/
2024-01-10T13:02:18,572 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2024-01-10T13:02:18,613   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-10T13:02:18,613   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2024-01-10T13:02:18,613   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-10T13:02:18,614   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2024-01-10T13:02:18,614   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-10T13:02:18,614   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2024-01-10T13:02:18,614   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-10T13:02:18,615   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2024-01-10T13:02:18,615   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-10T13:02:18,615   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2024-01-10T13:02:18,615   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-10T13:02:18,616   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2024-01-10T13:02:18,616   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-10T13:02:18,616   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2024-01-10T13:02:18,616   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-10T13:02:18,617   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2024-01-10T13:02:18,617   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-10T13:02:18,617   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2024-01-10T13:02:18,617   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-10T13:02:18,618   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2024-01-10T13:02:18,618   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-10T13:02:18,618   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2024-01-10T13:02:18,618   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-10T13:02:18,618   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2024-01-10T13:02:18,619   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-10T13:02:18,619   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2024-01-10T13:02:18,619   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-10T13:02:18,619   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2024-01-10T13:02:18,620   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-10T13:02:18,620   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2024-01-10T13:02:18,620   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-10T13:02:18,620   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2024-01-10T13:02:18,621   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-10T13:02:18,621   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2024-01-10T13:02:18,621   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-10T13:02:18,621   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2024-01-10T13:02:18,621   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-10T13:02:18,622   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2024-01-10T13:02:18,622   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-10T13:02:18,622   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2024-01-10T13:02:18,622   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-10T13:02:18,623   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2024-01-10T13:02:18,623   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-10T13:02:18,623   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2024-01-10T13:02:18,623   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-10T13:02:18,623   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2024-01-10T13:02:18,624   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-10T13:02:18,624   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2024-01-10T13:02:18,624   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-10T13:02:18,624   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2024-01-10T13:02:18,625   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-10T13:02:18,625   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2024-01-10T13:02:18,625   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-10T13:02:18,625   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2024-01-10T13:02:18,626   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-10T13:02:18,626   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2024-01-10T13:02:18,626   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-10T13:02:18,626   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2024-01-10T13:02:18,627   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-10T13:02:18,627   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2024-01-10T13:02:18,627   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-10T13:02:18,627   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2024-01-10T13:02:18,627   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-10T13:02:18,628   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2024-01-10T13:02:18,628   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-01-10T13:02:18,628   Found link https://files.pythonhosted.org/packages/9d/1e/99ffa0d73766a735c3e91d591c92537e37b0024cd9b1d745c4e5933563c1/moleculekit-0.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.0
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2024-01-10T13:02:18,645   Found link https://files.pythonhosted.org/packages/5c/b2/944d529319db190e13234dd2337bff23b7a7c3c1a98b2a95eb08fc802530/moleculekit-0.9.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.7
2024-01-10T13:02:18,645   Found link https://files.pythonhosted.org/packages/42/0a/fbfa3d5c838ad716fdcb9b5ad55bddb6dccd74c5c281ac171be93b0f58e2/moleculekit-0.9.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.8
2024-01-10T13:02:18,646   Found link https://files.pythonhosted.org/packages/15/e0/93b4cc5e997a9e4e01fd39f00548f04e3f068961abba30f82fc04aa828ac/moleculekit-0.9.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.9
2024-01-10T13:02:18,646   Found link https://files.pythonhosted.org/packages/7f/58/2f04c5387c3c23e5c46f71741f7655c380b01c6f88aad7b5e945943c3fd1/moleculekit-0.9.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.12
2024-01-10T13:02:18,646   Found link https://files.pythonhosted.org/packages/b5/7c/fde4b7b8c9cd6683036e87727f341a0c9de5dae09f324dfa1bc2aa2a6de0/moleculekit-0.9.13.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.13
2024-01-10T13:02:18,647   Found link https://files.pythonhosted.org/packages/8e/f7/39a1290893da55d759e629ea6d9e2509fe6c3a06538d3f80cca590859647/moleculekit-0.9.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.14
2024-01-10T13:02:18,647   Found link https://files.pythonhosted.org/packages/02/6e/108b002ecb68c789d690492a02ced311cea625fdd642348e5cd75bd25fdb/moleculekit-0.9.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.15
2024-01-10T13:02:18,647   Found link https://files.pythonhosted.org/packages/62/51/f195a9d66dab99b8f6bd30fe5f65f63c65e65ded97c8fd20bf0cda822ee1/moleculekit-0.10.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.10.0
2024-01-10T13:02:18,647   Found link https://files.pythonhosted.org/packages/19/73/98bfd38e7d5823dc1d21ca3557d9f599b09926d252b22e215688677fe1eb/moleculekit-1.0.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.0
2024-01-10T13:02:18,648   Found link https://files.pythonhosted.org/packages/fc/d7/f3aa2dd40f165c1b67401587414deb33e80764835dfe2abb16b9b1d167bf/moleculekit-1.0.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.1
2024-01-10T13:02:18,648   Found link https://files.pythonhosted.org/packages/19/54/5ec72761331cfeea3e48a65f0dc30f7c21ec586f6d2b904339c262abafd8/moleculekit-1.0.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.2
2024-01-10T13:02:18,648   Found link https://files.pythonhosted.org/packages/f9/12/d8febc3aa79b72ffa0ea8efb978370f58db848fba030df47ae546bccb298/moleculekit-1.0.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.3
2024-01-10T13:02:18,648   Found link https://files.pythonhosted.org/packages/07/ab/e6c8a654329cb5fc7cf2d91d47934a6f53ec8b34276e96128f9961147a6a/moleculekit-1.0.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.4
2024-01-10T13:02:18,649   Found link https://files.pythonhosted.org/packages/d3/02/1e965b08593af843878d5bc3f7cc49cf61d4c9ca3a1e07e796923fbdb65e/moleculekit-1.0.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.5
2024-01-10T13:02:18,649   Found link https://files.pythonhosted.org/packages/28/2f/61d6e171e7b0309a94b3920b2743e5b6990d24a4870a5b1caf39f0e34338/moleculekit-1.0.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.6
2024-01-10T13:02:18,649   Found link https://files.pythonhosted.org/packages/6d/1e/bbd2d882b353e673f44897179ab0b6e76df9c2a657d25d47090dbdce76d3/moleculekit-1.0.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.7
2024-01-10T13:02:18,649   Found link https://files.pythonhosted.org/packages/61/45/acbe2272378c87f0796b1ebcba0673a13acc5ed87eb0d29fa16e1bfe54cf/moleculekit-1.0.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.8
2024-01-10T13:02:18,650   Found link https://files.pythonhosted.org/packages/72/48/3df4bcf3a3e5ca9c0e05e5486c0a7da3b7d6b3ff49830d473b6e72f02443/moleculekit-1.0.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.9
2024-01-10T13:02:18,650   Found link https://files.pythonhosted.org/packages/09/29/7e58bdf57dda487be8ab4c3719ebbf31db17ad65232fc9305a20eaa3c90c/moleculekit-1.1.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.0
2024-01-10T13:02:18,650   Found link https://files.pythonhosted.org/packages/3c/b6/64b6ae76e4b562d453b31fd28678232838949d56f1dafabd12531362de23/moleculekit-1.1.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.1
2024-01-10T13:02:18,650   Found link https://files.pythonhosted.org/packages/15/f8/fb94ef622b57eea44916cbed8a838efcbbd62c9732879ec4864c3abaf3d0/moleculekit-1.1.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.2
2024-01-10T13:02:18,651   Found link https://files.pythonhosted.org/packages/85/87/2264a91838fc8d44f1661b9ae462976e2b9b23f002591db7be9287f51d43/moleculekit-1.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.4
2024-01-10T13:02:18,651   Found link https://files.pythonhosted.org/packages/f4/53/156ee257b5781f55228ef884eec2b57cc368dbf37c4654315347af0e7a71/moleculekit-1.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.6
2024-01-10T13:02:18,651   Found link https://files.pythonhosted.org/packages/71/3c/15df00803c890b9d17390a31c60fa2c070a88e8a8c33c79ef10ddf023159/moleculekit-1.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.7
2024-01-10T13:02:18,651   Found link https://files.pythonhosted.org/packages/eb/2e/c50f42aefc5f3510073bd5059723baff738a5ee171174441586000c444dc/moleculekit-1.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.8
2024-01-10T13:02:18,652   Found link https://files.pythonhosted.org/packages/59/b9/6e9913fc67fa6321d5c441eb59a93e257f1fba383848a6bd645a7d427045/moleculekit-1.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.9
2024-01-10T13:02:18,652   Found link https://files.pythonhosted.org/packages/06/90/69685dad023515e231d8da7747793f33c497bb62496c4075e518f230da55/moleculekit-1.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.0
2024-01-10T13:02:18,652   Found link https://files.pythonhosted.org/packages/1a/07/36426e9820ea0ecff884e15fc9ebe413735a2b22a9212cdcbb9b62e56744/moleculekit-1.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.1
2024-01-10T13:02:18,652   Found link https://files.pythonhosted.org/packages/a1/56/2e1ac2fac4f566abf327baf326d17421047e363138c1c132a537a3eaf5ec/moleculekit-1.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.2
2024-01-10T13:02:18,653   Found link https://files.pythonhosted.org/packages/cb/28/b8fa8b94edf207d206627fcb18753ce3fad1450d7d5e5b052daa211b226b/moleculekit-1.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.4
2024-01-10T13:02:18,653   Found link https://files.pythonhosted.org/packages/cb/c9/8d7c9c427863a8e1be9e5487520f26a4ea63a34e735a3c5598f1e8b43cb4/moleculekit-1.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.5
2024-01-10T13:02:18,653   Found link https://files.pythonhosted.org/packages/39/b3/50e46e2780075c4adf93bba603ad047457f3d9cd70a77f4909776ec446b3/moleculekit-1.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.7
2024-01-10T13:02:18,653   Found link https://files.pythonhosted.org/packages/29/f1/10cd916b3024b2efe08c06413dff5938859e01c8bc671cde8bf070758031/moleculekit-1.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.8
2024-01-10T13:02:18,654   Found link https://files.pythonhosted.org/packages/47/55/207179562e46a3cba4a1cb813c1754be6c5a1664a11d1dcffe89b51c1ca4/moleculekit-1.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.9
2024-01-10T13:02:18,654   Found link https://files.pythonhosted.org/packages/2e/1c/a07b4d5f471fc90ba12e88e44675ddbf0ba4b0a658c2fc014491a7a27092/moleculekit-1.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.0
2024-01-10T13:02:18,654   Found link https://files.pythonhosted.org/packages/80/9b/d0375ea58246506494224acf560e8d2da623d1635047089316a01ab146a0/moleculekit-1.3.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.1
2024-01-10T13:02:18,654   Found link https://files.pythonhosted.org/packages/f9/f6/5808fddfaeeb3c021514c45f1b896329245c2e1c6218a86b9bc9f1904d7d/moleculekit-1.3.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.3
2024-01-10T13:02:18,655   Found link https://files.pythonhosted.org/packages/0f/87/45be2661273532639b9aef46f7335ef962ac0f4d5a022cad9fae46b3ed76/moleculekit-1.3.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.4
2024-01-10T13:02:18,655   Found link https://files.pythonhosted.org/packages/0b/c2/d5b36c664c2d4f8736b5dbf06b05d9efeeacd4d488125c8feb0e4efb3594/moleculekit-1.3.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.5
2024-01-10T13:02:18,656   Found link https://files.pythonhosted.org/packages/30/3d/7f0577f2f4fd87df9160c6c80c49fe7d025f40b9f25c6b6d9ed0bcd2341f/moleculekit-1.3.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.7
2024-01-10T13:02:18,656   Found link https://files.pythonhosted.org/packages/1a/fd/3788664397288c8169d713da13ae2419a0534a9ee826d1ce718811e27569/moleculekit-1.3.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.8
2024-01-10T13:02:18,656   Found link https://files.pythonhosted.org/packages/fe/a6/b9b3e9ec27de783731911f111354a9d1e6cd766e47aeff934b769a415311/moleculekit-1.3.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.9
2024-01-10T13:02:18,656   Found link https://files.pythonhosted.org/packages/fd/8d/5420b8fc8713c9a27e74eb85aab9b758169f739c0d6aca1540d73582aba6/moleculekit-1.4.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.0
2024-01-10T13:02:18,657   Found link https://files.pythonhosted.org/packages/68/7e/cd023ea3b0a765a65611a8b103d51dbb55fc97bb9df335095d520ad46deb/moleculekit-1.4.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.1
2024-01-10T13:02:18,657   Found link https://files.pythonhosted.org/packages/21/ce/d98ddf9106565632f876b1b853bb23c64534e65884b9d3d73208c7fe17e6/moleculekit-1.4.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.2
2024-01-10T13:02:18,657   Found link https://files.pythonhosted.org/packages/f9/12/68450058da1b4f39328ce41f22cfb5a38717147b3e624cb76b225318dd96/moleculekit-1.4.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.3
2024-01-10T13:02:18,657   Found link https://files.pythonhosted.org/packages/a1/9c/61a877e38393372a16746096dc836e3a24d0fe31240644258396f6ec1dd5/moleculekit-1.4.5-1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.5-1
2024-01-10T13:02:18,658   Found link https://files.pythonhosted.org/packages/65/2b/f8fbac2b196d899066e4d26b78e62adc1f2356734b3de63da153e9b18e44/moleculekit-1.4.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.6
2024-01-10T13:02:18,659   Found link https://files.pythonhosted.org/packages/6b/80/69b1d49f78060edafdb9a5e49080f189c6d72a7a2a83f2567f7abfaf9fcb/moleculekit-1.4.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.7
2024-01-10T13:02:18,659   Found link https://files.pythonhosted.org/packages/91/bd/4e692bc271e6a957732a20347e43f0388e12ab60df6717a178b628f18fce/moleculekit-1.4.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.8
2024-01-10T13:02:18,660   Found link https://files.pythonhosted.org/packages/0b/22/49372d8ecca8baa50e08ca3971786e207825556920bd5b19697d085bf681/moleculekit-1.4.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.9
2024-01-10T13:02:18,660   Found link https://files.pythonhosted.org/packages/3a/52/c87b6f8651063e38a723e8506788475ecf32f2b2e67fcf42739e8737f120/moleculekit-1.5.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.0
2024-01-10T13:02:18,661   Found link https://files.pythonhosted.org/packages/e9/64/50b82745c79e8f28fb8c1615e637221dceb4af565af8e785b04b5c9bd7f0/moleculekit-1.5.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.1
2024-01-10T13:02:18,661   Found link https://files.pythonhosted.org/packages/3d/18/e249854f20e449b9890eca08ef37ccdb87f719b6ac0db8e9d2ca9c4eb890/moleculekit-1.5.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.2
2024-01-10T13:02:18,662   Found link https://files.pythonhosted.org/packages/3f/e8/860f3b89afd29b5ba405ab028f3d49ac22e95557b6b906e475c2f6558df5/moleculekit-1.5.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.3
2024-01-10T13:02:18,662   Found link https://files.pythonhosted.org/packages/e7/1e/8f982d3446852e3778250fc8af491eb3ceaf081b891eb7a4936776dfe730/moleculekit-1.5.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.4
2024-01-10T13:02:18,663   Found link https://files.pythonhosted.org/packages/46/81/f7be4e086eb469d0fda5d9be51c6fe2107d39c4127f64218774c40f5923a/moleculekit-1.5.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.5
2024-01-10T13:02:18,663   Found link https://files.pythonhosted.org/packages/d1/99/5866f661f25b1168804a5c26ab38edd26a7239d91b84c13fb129c1f84ab6/moleculekit-1.5.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.6
2024-01-10T13:02:18,664   Found link https://files.pythonhosted.org/packages/25/45/e228ef66e7b03b1613382490f07c3db31c9713e3878eb9766781076b8209/moleculekit-1.5.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.7
2024-01-10T13:02:18,665   Found link https://files.pythonhosted.org/packages/5e/4a/8e20ee9556cfcdc8c51aac44a054b76db1b9abf8c83124f51521397f7673/moleculekit-1.5.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.8
2024-01-10T13:02:18,665   Found link https://files.pythonhosted.org/packages/00/79/eafaf1a45594ebe0f5e3e3a775bb8e4635dd46e63a048cc577a4e3c4c29b/moleculekit-1.6.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.0
2024-01-10T13:02:18,666   Found link https://files.pythonhosted.org/packages/c2/66/b802cbaa73639d3fb24d7aca0a21b932bd6b781103c3aa0662fd27dd64e0/moleculekit-1.6.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.1
2024-01-10T13:02:18,666   Found link https://files.pythonhosted.org/packages/01/31/1debf4b7c89e0060dc1f7d19ab348e627b9183890a8e443c1ee54ee3bd6c/moleculekit-1.6.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.4
2024-01-10T13:02:18,667   Found link https://files.pythonhosted.org/packages/d6/3a/77427acaba2c2b4670a4b94ce5cd161b60ac547e812a6337374265f3272d/moleculekit-1.6.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.5
2024-01-10T13:02:18,667   Found link https://files.pythonhosted.org/packages/75/c9/3ed46001d1cc28d02ee2ee30de3377bc39f9545ea0a7b7932b6c31770879/moleculekit-1.6.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.6
2024-01-10T13:02:18,668   Found link https://files.pythonhosted.org/packages/b0/eb/47f199ab494f4a3929e1265222e24dcfce4dc2dde54923d1be8e513bf765/moleculekit-1.6.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.7
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2024-01-10T13:02:18,670   Found link https://files.pythonhosted.org/packages/4e/3a/29fb1aa0e3792fef88348885348370f39af453fb75d5505a208068d1c4ac/moleculekit-1.7.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.1
2024-01-10T13:02:18,671   Found link https://files.pythonhosted.org/packages/4a/13/dd6711d592d27e604c48830300f5596aafa1bbc479dc5eb49ed9797085eb/moleculekit-1.7.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.2
2024-01-10T13:02:18,671   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2024-01-10T13:02:18,672   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2024-01-10T13:02:18,672   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2024-01-10T13:02:18,673   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2024-01-10T13:02:18,673   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2024-01-10T13:02:18,674   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2024-01-10T13:02:18,674   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2024-01-10T13:02:18,675   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2024-01-10T13:02:18,675   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2024-01-10T13:02:18,676   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2024-01-10T13:02:18,677   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2024-01-10T13:02:18,677   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2024-01-10T13:02:18,678   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2024-01-10T13:02:18,678   Found link https://files.pythonhosted.org/packages/96/a3/11b655506ce842ebea0b6d4c86883a538095687cb7bc9c4a179420971bd7/moleculekit-1.8.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.1
2024-01-10T13:02:18,679   Found link https://files.pythonhosted.org/packages/9d/d3/ead35117c0f3b3b1be847d561ff31bf59dfde0c49982bff106a3cc3876f0/moleculekit-1.8.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.2
2024-01-10T13:02:18,679   Found link https://files.pythonhosted.org/packages/23/e8/3ebe2bfb667296b1c79d4e59fdfb487116bfd8bec579ca242eec7ecad0c2/moleculekit-1.8.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.3
2024-01-10T13:02:18,680   Found link https://files.pythonhosted.org/packages/6f/4d/4a0e90a65d79829ae0bec8d857de2f8b7e18b6d60e05daa99cdbed0061c0/moleculekit-1.8.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.4
2024-01-10T13:02:18,680   Found link https://files.pythonhosted.org/packages/15/bb/f88884d7710aeb6290c69f180df912ce73beb4975ceea9f58aa28250737c/moleculekit-1.8.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.5
2024-01-10T13:02:18,681   Found link https://files.pythonhosted.org/packages/e4/a8/ef9f25e6e42436ceaecfd8bb0aadbf40855976374a46b8cf8d55000fa0a8/moleculekit-1.8.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.6
2024-01-10T13:02:18,681   Found link https://files.pythonhosted.org/packages/67/c5/ed682f5ea9a16915b98612e0b274b50303bb912ccb71ab106247e01be8c2/moleculekit-1.8.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.7
2024-01-10T13:02:18,682   Found link https://files.pythonhosted.org/packages/23/cd/efd06d75f4a0e866e23156ca3c771c99a22bcfb5f2d1b0f42f853b9cfd27/moleculekit-1.8.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.10
2024-01-10T13:02:18,682   Found link https://files.pythonhosted.org/packages/d2/1a/935247798d3097c5093e33b026729b2e218fefd40f58c4b8b8bd3fcf93b4/moleculekit-1.8.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.13
2024-01-10T13:02:18,683   Found link https://files.pythonhosted.org/packages/b0/1c/de17759f3cbae5b6b06b60242724a93570b332f657fdeff9e582b6bda391/moleculekit-1.8.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.14
2024-01-10T13:02:18,683   Found link https://files.pythonhosted.org/packages/20/a3/7476dceb769dd7bb318d84590a372f1974e978cefb204da16f2b4d99a34e/moleculekit-1.8.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.15
2024-01-10T13:02:18,684   Found link https://files.pythonhosted.org/packages/ce/8d/e060616d8e4e03f56d544939f3ccea7f3d665038a66bbf57ba0bcd1f4711/moleculekit-1.8.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.17
2024-01-10T13:02:18,685   Found link https://files.pythonhosted.org/packages/36/66/5b4a8da5461b4547e9b3e58f477ddf359701865a7e2ca5b0348fa20f54ae/moleculekit-1.8.18.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.18
2024-01-10T13:02:18,685   Found link https://files.pythonhosted.org/packages/51/33/5a8b10a29ca3c7a893f4a727341611121bc5ec9e2e0004e0c0d4748e33f7/moleculekit-1.8.19.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.19
2024-01-10T13:02:18,686   Found link https://files.pythonhosted.org/packages/0c/02/8cb68afa12c5dac1a7e486d39e9017883f51e17c4fd781898edf79cd2f00/moleculekit-1.8.20.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.20
2024-01-10T13:02:18,686 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2024-01-10T13:02:18,686 Getting page https://www.piwheels.org/simple/moleculekit/
2024-01-10T13:02:18,687 Found index url https://www.piwheels.org/simple/
2024-01-10T13:02:18,764 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
2024-01-10T13:02:18,847   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.20-cp311-cp311-linux_armv6l.whl#sha256=fae13ef57107e6cafbffdc377f58a8f0dcb271addce9e592e6d369da91076ad2 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-01-10T13:02:18,851   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.14-cp311-cp311-linux_armv6l.whl#sha256=8629ac0797c90996eccc556595395a73f694a991add5f87b742e90afa9657440 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-01-10T13:02:18,880   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv6l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,880   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv7l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,880   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,880   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv7l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,880   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv6l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,880   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,881   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,881   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
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2024-01-10T13:02:18,881   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,882   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,882   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,882   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,882   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,882   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,883   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,883   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,883   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,883   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,883   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,883   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,884   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,884   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,884   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,884   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,884   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,885   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,885   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
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2024-01-10T13:02:18,885   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,885   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,885   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,886   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,886   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,886   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,886   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,886   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,887   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,887   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,887   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,887   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,887   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,887   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,888   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,888   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,888   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,888   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,888   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,889   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,889   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,889   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,889   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,889   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,890   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv6l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,890   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,890   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,890   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,890   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv6l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,890   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv7l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,891   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv6l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,891   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv7l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,891   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv6l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,891   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv7l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,891   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv6l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,892   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv7l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,892   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv6l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,892   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv7l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,892   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv6l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,892   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv7l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,893   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv6l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,893   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv7l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,893   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv6l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,893   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv7l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,893   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv6l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,893   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv7l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,894   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv6l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,894   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv7l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,894   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv6l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,894   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv7l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,894   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv6l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,895   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv7l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,895   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv6l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,895   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv7l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,895   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv6l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,895   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv7l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,896   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv6l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,896   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv7l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,896   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv6l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2024-01-10T13:02:18,896   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv7l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
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2024-01-10T13:02:18,905 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2024-01-10T13:02:18,905 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2024-01-10T13:02:18,947 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2024-01-10T13:02:18,965 Collecting moleculekit==1.8.20
2024-01-10T13:02:18,967   Created temporary directory: /tmp/pip-unpack-fas4xs2s
2024-01-10T13:02:19,355   Downloading moleculekit-1.8.20.tar.gz (6.7 MB)
2024-01-10T13:02:22,687   Added moleculekit==1.8.20 from https://files.pythonhosted.org/packages/0c/02/8cb68afa12c5dac1a7e486d39e9017883f51e17c4fd781898edf79cd2f00/moleculekit-1.8.20.tar.gz to build tracker '/tmp/pip-build-tracker-i9jt0als'
2024-01-10T13:02:22,696   Created temporary directory: /tmp/pip-build-env-vl29xpcs
2024-01-10T13:02:22,706   Installing build dependencies: started
2024-01-10T13:02:22,707   Running command pip subprocess to install build dependencies
2024-01-10T13:02:23,904   Using pip 23.3 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9)
2024-01-10T13:02:24,591   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-01-10T13:02:26,072   Collecting setuptools
2024-01-10T13:02:26,091     Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.0.3-py3-none-any.whl (819 kB)
2024-01-10T13:02:27,079   Collecting numpy>=1.18.5
2024-01-10T13:02:27,101     Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.3-cp39-cp39-linux_armv7l.whl (19.4 MB)
2024-01-10T13:02:28,938   Collecting Cython>=0.29.21
2024-01-10T13:02:28,940     Obtaining dependency information for Cython>=0.29.21 from https://files.pythonhosted.org/packages/e3/7f/f584f5d15323feb897d42ef0e9d910649e2150d7a30cf7e7a8cc1d236e6f/Cython-3.0.8-py2.py3-none-any.whl.metadata
2024-01-10T13:02:28,985     Downloading Cython-3.0.8-py2.py3-none-any.whl.metadata (3.2 kB)
2024-01-10T13:02:29,066   Collecting toml
2024-01-10T13:02:29,082     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2024-01-10T13:02:29,186   Collecting versioneer==0.28 (from versioneer[toml]==0.28)
2024-01-10T13:02:29,205     Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2024-01-10T13:02:29,401   Collecting tomli (from versioneer[toml]==0.28)
2024-01-10T13:02:29,416     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2024-01-10T13:02:29,622   Downloading Cython-3.0.8-py2.py3-none-any.whl (1.2 MB)
2024-01-10T13:02:29,721      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 13.1 MB/s eta 0:00:00
2024-01-10T13:02:31,561   Installing collected packages: versioneer, tomli, toml, setuptools, numpy, Cython
2024-01-10T13:02:31,598     Creating /tmp/pip-build-env-vl29xpcs/overlay/bin
2024-01-10T13:02:31,600     changing mode of /tmp/pip-build-env-vl29xpcs/overlay/bin/versioneer to 755
2024-01-10T13:02:41,794     changing mode of /tmp/pip-build-env-vl29xpcs/overlay/bin/f2py to 755
2024-01-10T13:02:44,561     changing mode of /tmp/pip-build-env-vl29xpcs/overlay/bin/cygdb to 755
2024-01-10T13:02:44,563     changing mode of /tmp/pip-build-env-vl29xpcs/overlay/bin/cython to 755
2024-01-10T13:02:44,565     changing mode of /tmp/pip-build-env-vl29xpcs/overlay/bin/cythonize to 755
2024-01-10T13:02:44,590   ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
2024-01-10T13:02:44,590   scipy 1.8.1 requires numpy<1.25.0,>=1.17.3, but you have numpy 1.26.3 which is incompatible.
2024-01-10T13:02:44,591   Successfully installed Cython-3.0.8 numpy-1.26.3 setuptools-69.0.3 toml-0.10.2 tomli-2.0.1 versioneer-0.28
2024-01-10T13:02:44,773   WARNING: There was an error checking the latest version of pip.
2024-01-10T13:02:45,208   Installing build dependencies: finished with status 'done'
2024-01-10T13:02:45,212   Getting requirements to build wheel: started
2024-01-10T13:02:45,213   Running command Getting requirements to build wheel
2024-01-10T13:04:08,083   warning: moleculekit/wrapping/wrapping.pyx:47:4: Unreachable code
2024-01-10T13:04:14,228   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it changed.
2024-01-10T13:04:14,228   Compiling moleculekit/interactions/pipi/pipi.pyx because it changed.
2024-01-10T13:04:14,229   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it changed.
2024-01-10T13:04:14,229   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it changed.
2024-01-10T13:04:14,229   Compiling moleculekit/wrapping/wrapping.pyx because it changed.
2024-01-10T13:04:14,229   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it changed.
2024-01-10T13:04:14,229   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it changed.
2024-01-10T13:04:14,229   Compiling moleculekit/distance_utils/distance_utils.pyx because it changed.
2024-01-10T13:04:14,229   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it changed.
2024-01-10T13:04:14,229   Compiling moleculekit/fileformats/xtc/xtc.pyx because it changed.
2024-01-10T13:04:14,230   Compiling moleculekit/fileformats/xtc/trr.pyx because it changed.
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2024-01-10T13:04:14,511   running egg_info
2024-01-10T13:04:14,517   writing moleculekit.egg-info/PKG-INFO
2024-01-10T13:04:14,521   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-01-10T13:04:14,523   writing requirements to moleculekit.egg-info/requires.txt
2024-01-10T13:04:14,524   writing top-level names to moleculekit.egg-info/top_level.txt
2024-01-10T13:04:14,555   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-01-10T13:04:14,555   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,555   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,555   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2024-01-10T13:04:14,556   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,556   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,556   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,556   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,557   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,557   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,557   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,557   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,557   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,557   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,557   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,557   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,558   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,558   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,558   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,558   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,558   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,558   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,558   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,558   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,559   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,559   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,559   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,559   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,559   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,559   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,559   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,559   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,560   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,560   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,560   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,560   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,560   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,560   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,560   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,560   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,561   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,561   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,561   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,561   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,561   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,561   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,561   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,562   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,562   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,563   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,563   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,564   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,564   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
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2024-01-10T13:04:14,565   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-01-10T13:04:14,566   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,567   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,567   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,567   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:14,577   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-01-10T13:04:14,610   reading manifest template 'MANIFEST.in'
2024-01-10T13:04:14,853   no previously-included directories found matching 'moleculekit/test-data'
2024-01-10T13:04:14,854   no previously-included directories found matching 'moleculekit/tests'
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2024-01-10T13:04:14,855   adding license file 'LICENSE'
2024-01-10T13:04:14,874   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-01-10T13:04:16,003   Getting requirements to build wheel: finished with status 'done'
2024-01-10T13:04:16,019   Installing backend dependencies: started
2024-01-10T13:04:16,020   Running command pip subprocess to install backend dependencies
2024-01-10T13:04:17,521   Using pip 23.3 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9)
2024-01-10T13:04:18,139   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-01-10T13:04:18,474   Collecting wheel
2024-01-10T13:04:18,490     Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB)
2024-01-10T13:04:20,322   Installing collected packages: wheel
2024-01-10T13:04:20,537     Creating /tmp/pip-build-env-vl29xpcs/normal/bin
2024-01-10T13:04:20,539     changing mode of /tmp/pip-build-env-vl29xpcs/normal/bin/wheel to 755
2024-01-10T13:04:20,551   Successfully installed wheel-0.42.0
2024-01-10T13:04:20,779   WARNING: There was an error checking the latest version of pip.
2024-01-10T13:04:21,003   Installing backend dependencies: finished with status 'done'
2024-01-10T13:04:21,005   Created temporary directory: /tmp/pip-modern-metadata-y06901aw
2024-01-10T13:04:21,008   Preparing metadata (pyproject.toml): started
2024-01-10T13:04:21,009   Running command Preparing metadata (pyproject.toml)
2024-01-10T13:04:23,428   running dist_info
2024-01-10T13:04:23,430   creating /tmp/pip-modern-metadata-y06901aw/moleculekit.egg-info
2024-01-10T13:04:23,436   writing /tmp/pip-modern-metadata-y06901aw/moleculekit.egg-info/PKG-INFO
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2024-01-10T13:04:23,479   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,479   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,479   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,479   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,479   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,479   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,480   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,480   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,480   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,480   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,480   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,480   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,480   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,480   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,481   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,481   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,481   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,481   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,481   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,481   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,481   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,481   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,482   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,482   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,482   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,482   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,482   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,482   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,482   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,482   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,483   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,483   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,483   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,483   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,483   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,483   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,483   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,483   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,484   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,484   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,484   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,484   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,484   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,484   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,486   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,486   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,486   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,486   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,486   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,487   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,487   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,487   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,487   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,488   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,488   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,488   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,489   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,489   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,489   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:23,496   reading manifest file '/tmp/pip-modern-metadata-y06901aw/moleculekit.egg-info/SOURCES.txt'
2024-01-10T13:04:23,498   reading manifest template 'MANIFEST.in'
2024-01-10T13:04:23,756   no previously-included directories found matching 'moleculekit/test-data'
2024-01-10T13:04:23,756   no previously-included directories found matching 'moleculekit/tests'
2024-01-10T13:04:23,757   no previously-included directories found matching 'package'
2024-01-10T13:04:23,757   adding license file 'LICENSE'
2024-01-10T13:04:23,771   writing manifest file '/tmp/pip-modern-metadata-y06901aw/moleculekit.egg-info/SOURCES.txt'
2024-01-10T13:04:23,780   creating '/tmp/pip-modern-metadata-y06901aw/moleculekit-1.8.20.dist-info'
2024-01-10T13:04:23,977   Preparing metadata (pyproject.toml): finished with status 'done'
2024-01-10T13:04:23,983   Source in /tmp/pip-wheel-euesjtd3/moleculekit_c04e9658f7c44264898ee7049b1b6b05 has version 1.8.20, which satisfies requirement moleculekit==1.8.20 from https://files.pythonhosted.org/packages/0c/02/8cb68afa12c5dac1a7e486d39e9017883f51e17c4fd781898edf79cd2f00/moleculekit-1.8.20.tar.gz
2024-01-10T13:04:23,984   Removed moleculekit==1.8.20 from https://files.pythonhosted.org/packages/0c/02/8cb68afa12c5dac1a7e486d39e9017883f51e17c4fd781898edf79cd2f00/moleculekit-1.8.20.tar.gz from build tracker '/tmp/pip-build-tracker-i9jt0als'
2024-01-10T13:04:23,990 Created temporary directory: /tmp/pip-unpack-kh_elwoy
2024-01-10T13:04:23,991 Created temporary directory: /tmp/pip-unpack-taskjm60
2024-01-10T13:04:23,999 Building wheels for collected packages: moleculekit
2024-01-10T13:04:24,003   Created temporary directory: /tmp/pip-wheel-1q2dex9a
2024-01-10T13:04:24,003   Destination directory: /tmp/pip-wheel-1q2dex9a
2024-01-10T13:04:24,005   Building wheel for moleculekit (pyproject.toml): started
2024-01-10T13:04:24,006   Running command Building wheel for moleculekit (pyproject.toml)
2024-01-10T13:04:26,290   running bdist_wheel
2024-01-10T13:04:26,308   running build
2024-01-10T13:04:26,309   running build_py
2024-01-10T13:04:26,316   creating build
2024-01-10T13:04:26,317   creating build/lib.linux-armv7l-cpython-39
2024-01-10T13:04:26,317   creating build/lib.linux-armv7l-cpython-39/moleculekit
2024-01-10T13:04:26,319   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-01-10T13:04:26,320   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-01-10T13:04:26,322   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-01-10T13:04:26,324   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-01-10T13:04:26,326   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-01-10T13:04:26,328   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-01-10T13:04:26,331   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-01-10T13:04:26,335   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-01-10T13:04:26,340   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-01-10T13:04:26,342   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-01-10T13:04:26,344   copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-01-10T13:04:26,345   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-01-10T13:04:26,348   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-01-10T13:04:26,349   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-01-10T13:04:26,350   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-01-10T13:04:26,352   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-01-10T13:04:26,354   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-01-10T13:04:26,356   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-01-10T13:04:26,358   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-01-10T13:04:26,359   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-01-10T13:04:26,361   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-01-10T13:04:26,364   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-01-10T13:04:26,365   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-01-10T13:04:26,368   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-01-10T13:04:26,370   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-01-10T13:04:26,372   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-01-10T13:04:26,374   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-01-10T13:04:26,376   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-01-10T13:04:26,378   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-01-10T13:04:26,382   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-01-10T13:04:26,385   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-01-10T13:04:26,389   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-01-10T13:04:26,394   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-01-10T13:04:26,401   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-01-10T13:04:26,408   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-01-10T13:04:26,449   copying moleculekit/tools/modelling.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-01-10T13:04:26,455   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-01-10T13:04:26,457   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-01-10T13:04:26,461   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-01-10T13:04:26,468   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-01-10T13:04:26,470   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-01-10T13:04:26,477   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-01-10T13:04:26,484   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-01-10T13:04:26,488   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-01-10T13:04:26,491   creating build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-01-10T13:04:26,493   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-01-10T13:04:26,500   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-01-10T13:04:26,503   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-01-10T13:04:26,509   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-01-10T13:04:26,510   copying moleculekit/fileformats/utils.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-01-10T13:04:26,512   copying moleculekit/fileformats/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-01-10T13:04:26,514   copying moleculekit/fileformats/netcdf.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-01-10T13:04:26,518   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2024-01-10T13:04:26,519   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2024-01-10T13:04:26,521   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-01-10T13:04:26,522   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-01-10T13:04:26,525   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-01-10T13:04:26,528   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-01-10T13:04:26,530   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-01-10T13:04:26,532   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-01-10T13:04:26,534   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-01-10T13:04:26,537   creating build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-01-10T13:04:26,538   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-01-10T13:04:26,541   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-01-10T13:04:26,543   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-01-10T13:04:26,545   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-01-10T13:04:26,547   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-01-10T13:04:26,549   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-01-10T13:04:26,552   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-01-10T13:04:26,553   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-01-10T13:04:26,556   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-01-10T13:04:26,558   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-01-10T13:04:26,560   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-01-10T13:04:26,561   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-01-10T13:04:26,564   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-01-10T13:04:26,566   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-01-10T13:04:26,568   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-01-10T13:04:26,571   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-01-10T13:04:26,572   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-01-10T13:04:26,574   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-01-10T13:04:26,576   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-01-10T13:04:26,577   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-01-10T13:04:26,579   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-01-10T13:04:26,581   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-01-10T13:04:26,582   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-01-10T13:04:26,585   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-01-10T13:04:26,586   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-01-10T13:04:26,588   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-01-10T13:04:26,591   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-01-10T13:04:26,592   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-01-10T13:04:26,594   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-01-10T13:04:26,595   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-01-10T13:04:26,598   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-01-10T13:04:26,599   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-01-10T13:04:26,600   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-01-10T13:04:26,602   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-01-10T13:04:26,604   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-01-10T13:04:26,606   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-01-10T13:04:26,607   running egg_info
2024-01-10T13:04:26,613   writing moleculekit.egg-info/PKG-INFO
2024-01-10T13:04:26,616   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-01-10T13:04:26,617   writing requirements to moleculekit.egg-info/requires.txt
2024-01-10T13:04:26,619   writing top-level names to moleculekit.egg-info/top_level.txt
2024-01-10T13:04:26,637   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,637   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,637   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,638   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,638   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,638   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,638   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,638   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,638   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,638   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,638   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,639   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,639   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,639   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,639   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,639   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,639   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,639   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,640   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,640   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,640   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,640   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,640   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,640   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,640   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,640   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,641   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,641   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,641   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,641   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,641   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,641   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,641   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,641   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,642   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,642   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,642   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,642   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,642   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,642   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,642   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,642   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,643   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,643   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,643   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,643   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,643   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,643   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,643   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,643   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,644   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,644   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,644   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,644   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,644   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,646   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,646   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,646   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,646   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,646   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,647   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,647   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,647   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,647   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,648   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,648   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,648   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,648   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,649   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,649   dependency /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-10T13:04:26,655   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-01-10T13:04:26,664   reading manifest template 'MANIFEST.in'
2024-01-10T13:04:26,910   no previously-included directories found matching 'moleculekit/test-data'
2024-01-10T13:04:26,911   no previously-included directories found matching 'moleculekit/tests'
2024-01-10T13:04:26,912   no previously-included directories found matching 'package'
2024-01-10T13:04:26,912   adding license file 'LICENSE'
2024-01-10T13:04:26,931   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-01-10T13:04:26,941   /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2024-01-10T13:04:26,942   !!

2024-01-10T13:04:26,942           ********************************************************************************
2024-01-10T13:04:26,942           ############################
2024-01-10T13:04:26,942           # Package would be ignored #
2024-01-10T13:04:26,942           ############################
2024-01-10T13:04:26,942           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2024-01-10T13:04:26,942           but it is absent from setuptools' `packages` configuration.

2024-01-10T13:04:26,943           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-10T13:04:26,943           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2024-01-10T13:04:26,943           to the `packages` configuration field.

2024-01-10T13:04:26,943           Alternatively, you can also rely on setuptools' discovery methods
2024-01-10T13:04:26,943           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-10T13:04:26,943           instead of `find_packages(...)`/`find:`).

2024-01-10T13:04:26,944           You can read more about "package discovery" on setuptools documentation page:

2024-01-10T13:04:26,944           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-10T13:04:26,944           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2024-01-10T13:04:26,944           already explicitly excluding 'moleculekit.atomselect_utils' via
2024-01-10T13:04:26,944           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-10T13:04:26,944           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-10T13:04:26,945           combination with a more fine grained `package-data` configuration.

2024-01-10T13:04:26,945           You can read more about "package data files" on setuptools documentation page:

2024-01-10T13:04:26,945           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-10T13:04:26,945           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-10T13:04:26,946                 even if it does not contain any `.py` files.
2024-01-10T13:04:26,946                 On the other hand, currently there is no concept of package data
2024-01-10T13:04:26,946                 directory, all directories are treated like packages.
2024-01-10T13:04:26,946           ********************************************************************************

2024-01-10T13:04:26,946   !!
2024-01-10T13:04:26,946     check.warn(importable)
2024-01-10T13:04:26,946   /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2024-01-10T13:04:26,947   !!

2024-01-10T13:04:26,947           ********************************************************************************
2024-01-10T13:04:26,947           ############################
2024-01-10T13:04:26,947           # Package would be ignored #
2024-01-10T13:04:26,947           ############################
2024-01-10T13:04:26,947           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2024-01-10T13:04:26,947           but it is absent from setuptools' `packages` configuration.

2024-01-10T13:04:26,948           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-10T13:04:26,948           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2024-01-10T13:04:26,948           to the `packages` configuration field.

2024-01-10T13:04:26,948           Alternatively, you can also rely on setuptools' discovery methods
2024-01-10T13:04:26,948           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-10T13:04:26,948           instead of `find_packages(...)`/`find:`).

2024-01-10T13:04:26,948           You can read more about "package discovery" on setuptools documentation page:

2024-01-10T13:04:26,949           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-10T13:04:26,949           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2024-01-10T13:04:26,949           already explicitly excluding 'moleculekit.bondguesser_utils' via
2024-01-10T13:04:26,949           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-10T13:04:26,949           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-10T13:04:26,949           combination with a more fine grained `package-data` configuration.

2024-01-10T13:04:26,950           You can read more about "package data files" on setuptools documentation page:

2024-01-10T13:04:26,950           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-10T13:04:26,950           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-10T13:04:26,950                 even if it does not contain any `.py` files.
2024-01-10T13:04:26,950                 On the other hand, currently there is no concept of package data
2024-01-10T13:04:26,950                 directory, all directories are treated like packages.
2024-01-10T13:04:26,951           ********************************************************************************

2024-01-10T13:04:26,951   !!
2024-01-10T13:04:26,951     check.warn(importable)
2024-01-10T13:04:26,951   /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2024-01-10T13:04:26,951   !!

2024-01-10T13:04:26,951           ********************************************************************************
2024-01-10T13:04:26,952           ############################
2024-01-10T13:04:26,952           # Package would be ignored #
2024-01-10T13:04:26,952           ############################
2024-01-10T13:04:26,952           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2024-01-10T13:04:26,952           but it is absent from setuptools' `packages` configuration.

2024-01-10T13:04:26,952           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-10T13:04:26,952           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2024-01-10T13:04:26,952           to the `packages` configuration field.

2024-01-10T13:04:26,953           Alternatively, you can also rely on setuptools' discovery methods
2024-01-10T13:04:26,953           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-10T13:04:26,953           instead of `find_packages(...)`/`find:`).

2024-01-10T13:04:26,953           You can read more about "package discovery" on setuptools documentation page:

2024-01-10T13:04:26,953           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-10T13:04:26,953           If you don't want 'moleculekit.distance_utils' to be distributed and are
2024-01-10T13:04:26,954           already explicitly excluding 'moleculekit.distance_utils' via
2024-01-10T13:04:26,954           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-10T13:04:26,954           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-10T13:04:26,954           combination with a more fine grained `package-data` configuration.

2024-01-10T13:04:26,954           You can read more about "package data files" on setuptools documentation page:

2024-01-10T13:04:26,954           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-10T13:04:26,955           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-10T13:04:26,955                 even if it does not contain any `.py` files.
2024-01-10T13:04:26,955                 On the other hand, currently there is no concept of package data
2024-01-10T13:04:26,955                 directory, all directories are treated like packages.
2024-01-10T13:04:26,955           ********************************************************************************

2024-01-10T13:04:26,955   !!
2024-01-10T13:04:26,955     check.warn(importable)
2024-01-10T13:04:26,956   /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos' is absent from the `packages` configuration.
2024-01-10T13:04:26,956   !!

2024-01-10T13:04:26,956           ********************************************************************************
2024-01-10T13:04:26,956           ############################
2024-01-10T13:04:26,956           # Package would be ignored #
2024-01-10T13:04:26,956           ############################
2024-01-10T13:04:26,956           Python recognizes 'moleculekit.fileformats.binpos' as an importable package[^1],
2024-01-10T13:04:26,956           but it is absent from setuptools' `packages` configuration.

2024-01-10T13:04:26,957           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-10T13:04:26,957           package, please make sure that 'moleculekit.fileformats.binpos' is explicitly added
2024-01-10T13:04:26,957           to the `packages` configuration field.

2024-01-10T13:04:26,957           Alternatively, you can also rely on setuptools' discovery methods
2024-01-10T13:04:26,957           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-10T13:04:26,957           instead of `find_packages(...)`/`find:`).

2024-01-10T13:04:26,957           You can read more about "package discovery" on setuptools documentation page:

2024-01-10T13:04:26,958           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-10T13:04:26,958           If you don't want 'moleculekit.fileformats.binpos' to be distributed and are
2024-01-10T13:04:26,958           already explicitly excluding 'moleculekit.fileformats.binpos' via
2024-01-10T13:04:26,958           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-10T13:04:26,958           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-10T13:04:26,958           combination with a more fine grained `package-data` configuration.

2024-01-10T13:04:26,959           You can read more about "package data files" on setuptools documentation page:

2024-01-10T13:04:26,959           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-10T13:04:26,959           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-10T13:04:26,959                 even if it does not contain any `.py` files.
2024-01-10T13:04:26,959                 On the other hand, currently there is no concept of package data
2024-01-10T13:04:26,959                 directory, all directories are treated like packages.
2024-01-10T13:04:26,960           ********************************************************************************

2024-01-10T13:04:26,960   !!
2024-01-10T13:04:26,960     check.warn(importable)
2024-01-10T13:04:26,960   /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos.include' is absent from the `packages` configuration.
2024-01-10T13:04:26,960   !!

2024-01-10T13:04:26,960           ********************************************************************************
2024-01-10T13:04:26,960           ############################
2024-01-10T13:04:26,961           # Package would be ignored #
2024-01-10T13:04:26,961           ############################
2024-01-10T13:04:26,961           Python recognizes 'moleculekit.fileformats.binpos.include' as an importable package[^1],
2024-01-10T13:04:26,961           but it is absent from setuptools' `packages` configuration.

2024-01-10T13:04:26,961           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-10T13:04:26,961           package, please make sure that 'moleculekit.fileformats.binpos.include' is explicitly added
2024-01-10T13:04:26,961           to the `packages` configuration field.

2024-01-10T13:04:26,961           Alternatively, you can also rely on setuptools' discovery methods
2024-01-10T13:04:26,962           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-10T13:04:26,962           instead of `find_packages(...)`/`find:`).

2024-01-10T13:04:26,962           You can read more about "package discovery" on setuptools documentation page:

2024-01-10T13:04:26,962           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-10T13:04:26,962           If you don't want 'moleculekit.fileformats.binpos.include' to be distributed and are
2024-01-10T13:04:26,962           already explicitly excluding 'moleculekit.fileformats.binpos.include' via
2024-01-10T13:04:26,963           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-10T13:04:26,963           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-10T13:04:26,963           combination with a more fine grained `package-data` configuration.

2024-01-10T13:04:26,963           You can read more about "package data files" on setuptools documentation page:

2024-01-10T13:04:26,963           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-10T13:04:26,964           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-10T13:04:26,964                 even if it does not contain any `.py` files.
2024-01-10T13:04:26,964                 On the other hand, currently there is no concept of package data
2024-01-10T13:04:26,964                 directory, all directories are treated like packages.
2024-01-10T13:04:26,964           ********************************************************************************

2024-01-10T13:04:26,964   !!
2024-01-10T13:04:26,964     check.warn(importable)
2024-01-10T13:04:26,964   /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos.src' is absent from the `packages` configuration.
2024-01-10T13:04:26,965   !!

2024-01-10T13:04:26,965           ********************************************************************************
2024-01-10T13:04:26,965           ############################
2024-01-10T13:04:26,965           # Package would be ignored #
2024-01-10T13:04:26,965           ############################
2024-01-10T13:04:26,965           Python recognizes 'moleculekit.fileformats.binpos.src' as an importable package[^1],
2024-01-10T13:04:26,965           but it is absent from setuptools' `packages` configuration.

2024-01-10T13:04:26,966           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-10T13:04:26,966           package, please make sure that 'moleculekit.fileformats.binpos.src' is explicitly added
2024-01-10T13:04:26,966           to the `packages` configuration field.

2024-01-10T13:04:26,966           Alternatively, you can also rely on setuptools' discovery methods
2024-01-10T13:04:26,966           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-10T13:04:26,966           instead of `find_packages(...)`/`find:`).

2024-01-10T13:04:26,966           You can read more about "package discovery" on setuptools documentation page:

2024-01-10T13:04:26,967           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-10T13:04:26,967           If you don't want 'moleculekit.fileformats.binpos.src' to be distributed and are
2024-01-10T13:04:26,967           already explicitly excluding 'moleculekit.fileformats.binpos.src' via
2024-01-10T13:04:26,967           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-10T13:04:26,967           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-10T13:04:26,967           combination with a more fine grained `package-data` configuration.

2024-01-10T13:04:26,967           You can read more about "package data files" on setuptools documentation page:

2024-01-10T13:04:26,968           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-10T13:04:26,968           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-10T13:04:26,968                 even if it does not contain any `.py` files.
2024-01-10T13:04:26,968                 On the other hand, currently there is no concept of package data
2024-01-10T13:04:26,968                 directory, all directories are treated like packages.
2024-01-10T13:04:26,968           ********************************************************************************

2024-01-10T13:04:26,969   !!
2024-01-10T13:04:26,969     check.warn(importable)
2024-01-10T13:04:26,969   /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd' is absent from the `packages` configuration.
2024-01-10T13:04:26,969   !!

2024-01-10T13:04:26,969           ********************************************************************************
2024-01-10T13:04:26,969           ############################
2024-01-10T13:04:26,969           # Package would be ignored #
2024-01-10T13:04:26,970           ############################
2024-01-10T13:04:26,970           Python recognizes 'moleculekit.fileformats.dcd' as an importable package[^1],
2024-01-10T13:04:26,970           but it is absent from setuptools' `packages` configuration.

2024-01-10T13:04:26,970           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-10T13:04:26,970           package, please make sure that 'moleculekit.fileformats.dcd' is explicitly added
2024-01-10T13:04:26,970           to the `packages` configuration field.

2024-01-10T13:04:26,970           Alternatively, you can also rely on setuptools' discovery methods
2024-01-10T13:04:26,971           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-10T13:04:26,971           instead of `find_packages(...)`/`find:`).

2024-01-10T13:04:26,971           You can read more about "package discovery" on setuptools documentation page:

2024-01-10T13:04:26,971           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-10T13:04:26,971           If you don't want 'moleculekit.fileformats.dcd' to be distributed and are
2024-01-10T13:04:26,972           already explicitly excluding 'moleculekit.fileformats.dcd' via
2024-01-10T13:04:26,972           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-10T13:04:26,972           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-10T13:04:26,972           combination with a more fine grained `package-data` configuration.

2024-01-10T13:04:26,972           You can read more about "package data files" on setuptools documentation page:

2024-01-10T13:04:26,972           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-10T13:04:26,973           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-10T13:04:26,973                 even if it does not contain any `.py` files.
2024-01-10T13:04:26,973                 On the other hand, currently there is no concept of package data
2024-01-10T13:04:26,973                 directory, all directories are treated like packages.
2024-01-10T13:04:26,973           ********************************************************************************

2024-01-10T13:04:26,973   !!
2024-01-10T13:04:26,973     check.warn(importable)
2024-01-10T13:04:26,973   /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd.include' is absent from the `packages` configuration.
2024-01-10T13:04:26,974   !!

2024-01-10T13:04:26,974           ********************************************************************************
2024-01-10T13:04:26,974           ############################
2024-01-10T13:04:26,974           # Package would be ignored #
2024-01-10T13:04:26,974           ############################
2024-01-10T13:04:26,974           Python recognizes 'moleculekit.fileformats.dcd.include' as an importable package[^1],
2024-01-10T13:04:26,974           but it is absent from setuptools' `packages` configuration.

2024-01-10T13:04:26,975           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-10T13:04:26,975           package, please make sure that 'moleculekit.fileformats.dcd.include' is explicitly added
2024-01-10T13:04:26,975           to the `packages` configuration field.

2024-01-10T13:04:26,975           Alternatively, you can also rely on setuptools' discovery methods
2024-01-10T13:04:26,975           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-10T13:04:26,975           instead of `find_packages(...)`/`find:`).

2024-01-10T13:04:26,975           You can read more about "package discovery" on setuptools documentation page:

2024-01-10T13:04:26,976           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-10T13:04:26,976           If you don't want 'moleculekit.fileformats.dcd.include' to be distributed and are
2024-01-10T13:04:26,976           already explicitly excluding 'moleculekit.fileformats.dcd.include' via
2024-01-10T13:04:26,976           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-10T13:04:26,976           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-10T13:04:26,976           combination with a more fine grained `package-data` configuration.

2024-01-10T13:04:26,977           You can read more about "package data files" on setuptools documentation page:

2024-01-10T13:04:26,977           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-10T13:04:26,977           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-10T13:04:26,977                 even if it does not contain any `.py` files.
2024-01-10T13:04:26,977                 On the other hand, currently there is no concept of package data
2024-01-10T13:04:26,977                 directory, all directories are treated like packages.
2024-01-10T13:04:26,977           ********************************************************************************

2024-01-10T13:04:26,978   !!
2024-01-10T13:04:26,978     check.warn(importable)
2024-01-10T13:04:26,978   /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd.src' is absent from the `packages` configuration.
2024-01-10T13:04:26,978   !!

2024-01-10T13:04:26,978           ********************************************************************************
2024-01-10T13:04:26,978           ############################
2024-01-10T13:04:26,978           # Package would be ignored #
2024-01-10T13:04:26,979           ############################
2024-01-10T13:04:26,979           Python recognizes 'moleculekit.fileformats.dcd.src' as an importable package[^1],
2024-01-10T13:04:26,979           but it is absent from setuptools' `packages` configuration.

2024-01-10T13:04:26,979           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-10T13:04:26,979           package, please make sure that 'moleculekit.fileformats.dcd.src' is explicitly added
2024-01-10T13:04:26,979           to the `packages` configuration field.

2024-01-10T13:04:26,979           Alternatively, you can also rely on setuptools' discovery methods
2024-01-10T13:04:26,980           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-10T13:04:26,980           instead of `find_packages(...)`/`find:`).

2024-01-10T13:04:26,980           You can read more about "package discovery" on setuptools documentation page:

2024-01-10T13:04:26,980           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-10T13:04:26,980           If you don't want 'moleculekit.fileformats.dcd.src' to be distributed and are
2024-01-10T13:04:26,980           already explicitly excluding 'moleculekit.fileformats.dcd.src' via
2024-01-10T13:04:26,980           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-10T13:04:26,981           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-10T13:04:26,981           combination with a more fine grained `package-data` configuration.

2024-01-10T13:04:26,981           You can read more about "package data files" on setuptools documentation page:

2024-01-10T13:04:26,981           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-10T13:04:26,982           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-10T13:04:26,982                 even if it does not contain any `.py` files.
2024-01-10T13:04:26,982                 On the other hand, currently there is no concept of package data
2024-01-10T13:04:26,982                 directory, all directories are treated like packages.
2024-01-10T13:04:26,982           ********************************************************************************

2024-01-10T13:04:26,982   !!
2024-01-10T13:04:26,982     check.warn(importable)
2024-01-10T13:04:26,982   /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc' is absent from the `packages` configuration.
2024-01-10T13:04:26,983   !!

2024-01-10T13:04:26,983           ********************************************************************************
2024-01-10T13:04:26,983           ############################
2024-01-10T13:04:26,983           # Package would be ignored #
2024-01-10T13:04:26,983           ############################
2024-01-10T13:04:26,983           Python recognizes 'moleculekit.fileformats.xtc' as an importable package[^1],
2024-01-10T13:04:26,983           but it is absent from setuptools' `packages` configuration.

2024-01-10T13:04:26,983           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-10T13:04:26,984           package, please make sure that 'moleculekit.fileformats.xtc' is explicitly added
2024-01-10T13:04:26,984           to the `packages` configuration field.

2024-01-10T13:04:26,984           Alternatively, you can also rely on setuptools' discovery methods
2024-01-10T13:04:26,984           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-10T13:04:26,984           instead of `find_packages(...)`/`find:`).

2024-01-10T13:04:26,984           You can read more about "package discovery" on setuptools documentation page:

2024-01-10T13:04:26,985           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-10T13:04:26,985           If you don't want 'moleculekit.fileformats.xtc' to be distributed and are
2024-01-10T13:04:26,985           already explicitly excluding 'moleculekit.fileformats.xtc' via
2024-01-10T13:04:26,985           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-10T13:04:26,985           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-10T13:04:26,985           combination with a more fine grained `package-data` configuration.

2024-01-10T13:04:26,985           You can read more about "package data files" on setuptools documentation page:

2024-01-10T13:04:26,986           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-10T13:04:26,986           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-10T13:04:26,986                 even if it does not contain any `.py` files.
2024-01-10T13:04:26,986                 On the other hand, currently there is no concept of package data
2024-01-10T13:04:26,986                 directory, all directories are treated like packages.
2024-01-10T13:04:26,987           ********************************************************************************

2024-01-10T13:04:26,987   !!
2024-01-10T13:04:26,987     check.warn(importable)
2024-01-10T13:04:26,987   /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc.include' is absent from the `packages` configuration.
2024-01-10T13:04:26,987   !!

2024-01-10T13:04:26,987           ********************************************************************************
2024-01-10T13:04:26,988           ############################
2024-01-10T13:04:26,988           # Package would be ignored #
2024-01-10T13:04:26,988           ############################
2024-01-10T13:04:26,988           Python recognizes 'moleculekit.fileformats.xtc.include' as an importable package[^1],
2024-01-10T13:04:26,988           but it is absent from setuptools' `packages` configuration.

2024-01-10T13:04:26,988           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-10T13:04:26,988           package, please make sure that 'moleculekit.fileformats.xtc.include' is explicitly added
2024-01-10T13:04:26,988           to the `packages` configuration field.

2024-01-10T13:04:26,989           Alternatively, you can also rely on setuptools' discovery methods
2024-01-10T13:04:26,989           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-10T13:04:26,989           instead of `find_packages(...)`/`find:`).

2024-01-10T13:04:26,989           You can read more about "package discovery" on setuptools documentation page:

2024-01-10T13:04:26,989           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-10T13:04:26,990           If you don't want 'moleculekit.fileformats.xtc.include' to be distributed and are
2024-01-10T13:04:26,990           already explicitly excluding 'moleculekit.fileformats.xtc.include' via
2024-01-10T13:04:26,990           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-10T13:04:26,990           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-10T13:04:26,990           combination with a more fine grained `package-data` configuration.

2024-01-10T13:04:26,990           You can read more about "package data files" on setuptools documentation page:

2024-01-10T13:04:26,990           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-10T13:04:26,991           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-10T13:04:26,991                 even if it does not contain any `.py` files.
2024-01-10T13:04:26,991                 On the other hand, currently there is no concept of package data
2024-01-10T13:04:26,991                 directory, all directories are treated like packages.
2024-01-10T13:04:26,991           ********************************************************************************

2024-01-10T13:04:26,992   !!
2024-01-10T13:04:26,992     check.warn(importable)
2024-01-10T13:04:26,992   /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc.src' is absent from the `packages` configuration.
2024-01-10T13:04:26,992   !!

2024-01-10T13:04:26,992           ********************************************************************************
2024-01-10T13:04:26,992           ############################
2024-01-10T13:04:26,992           # Package would be ignored #
2024-01-10T13:04:26,993           ############################
2024-01-10T13:04:26,993           Python recognizes 'moleculekit.fileformats.xtc.src' as an importable package[^1],
2024-01-10T13:04:26,993           but it is absent from setuptools' `packages` configuration.

2024-01-10T13:04:26,993           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-10T13:04:26,993           package, please make sure that 'moleculekit.fileformats.xtc.src' is explicitly added
2024-01-10T13:04:26,993           to the `packages` configuration field.

2024-01-10T13:04:26,993           Alternatively, you can also rely on setuptools' discovery methods
2024-01-10T13:04:26,994           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-10T13:04:26,994           instead of `find_packages(...)`/`find:`).

2024-01-10T13:04:26,994           You can read more about "package discovery" on setuptools documentation page:

2024-01-10T13:04:26,994           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-10T13:04:26,994           If you don't want 'moleculekit.fileformats.xtc.src' to be distributed and are
2024-01-10T13:04:26,995           already explicitly excluding 'moleculekit.fileformats.xtc.src' via
2024-01-10T13:04:26,995           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-10T13:04:26,995           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-10T13:04:26,995           combination with a more fine grained `package-data` configuration.

2024-01-10T13:04:26,995           You can read more about "package data files" on setuptools documentation page:

2024-01-10T13:04:26,996           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-10T13:04:26,996           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-10T13:04:26,996                 even if it does not contain any `.py` files.
2024-01-10T13:04:26,996                 On the other hand, currently there is no concept of package data
2024-01-10T13:04:26,996                 directory, all directories are treated like packages.
2024-01-10T13:04:26,996           ********************************************************************************

2024-01-10T13:04:26,997   !!
2024-01-10T13:04:26,997     check.warn(importable)
2024-01-10T13:04:26,997   /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2024-01-10T13:04:26,997   !!

2024-01-10T13:04:26,997           ********************************************************************************
2024-01-10T13:04:26,998           ############################
2024-01-10T13:04:26,998           # Package would be ignored #
2024-01-10T13:04:26,998           ############################
2024-01-10T13:04:26,998           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2024-01-10T13:04:26,998           but it is absent from setuptools' `packages` configuration.

2024-01-10T13:04:26,998           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-10T13:04:26,998           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2024-01-10T13:04:26,998           to the `packages` configuration field.

2024-01-10T13:04:26,999           Alternatively, you can also rely on setuptools' discovery methods
2024-01-10T13:04:26,999           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-10T13:04:26,999           instead of `find_packages(...)`/`find:`).

2024-01-10T13:04:26,999           You can read more about "package discovery" on setuptools documentation page:

2024-01-10T13:04:27,000           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-10T13:04:27,000           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2024-01-10T13:04:27,000           already explicitly excluding 'moleculekit.interactions.cationpi' via
2024-01-10T13:04:27,000           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-10T13:04:27,000           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-10T13:04:27,000           combination with a more fine grained `package-data` configuration.

2024-01-10T13:04:27,000           You can read more about "package data files" on setuptools documentation page:

2024-01-10T13:04:27,001           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-10T13:04:27,001           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-10T13:04:27,001                 even if it does not contain any `.py` files.
2024-01-10T13:04:27,001                 On the other hand, currently there is no concept of package data
2024-01-10T13:04:27,001                 directory, all directories are treated like packages.
2024-01-10T13:04:27,002           ********************************************************************************

2024-01-10T13:04:27,002   !!
2024-01-10T13:04:27,002     check.warn(importable)
2024-01-10T13:04:27,002   /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2024-01-10T13:04:27,002   !!

2024-01-10T13:04:27,002           ********************************************************************************
2024-01-10T13:04:27,002           ############################
2024-01-10T13:04:27,003           # Package would be ignored #
2024-01-10T13:04:27,003           ############################
2024-01-10T13:04:27,003           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2024-01-10T13:04:27,003           but it is absent from setuptools' `packages` configuration.

2024-01-10T13:04:27,003           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-10T13:04:27,003           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2024-01-10T13:04:27,003           to the `packages` configuration field.

2024-01-10T13:04:27,004           Alternatively, you can also rely on setuptools' discovery methods
2024-01-10T13:04:27,004           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-10T13:04:27,004           instead of `find_packages(...)`/`find:`).

2024-01-10T13:04:27,004           You can read more about "package discovery" on setuptools documentation page:

2024-01-10T13:04:27,004           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-10T13:04:27,004           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2024-01-10T13:04:27,005           already explicitly excluding 'moleculekit.interactions.hbonds' via
2024-01-10T13:04:27,005           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-10T13:04:27,005           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-10T13:04:27,005           combination with a more fine grained `package-data` configuration.

2024-01-10T13:04:27,005           You can read more about "package data files" on setuptools documentation page:

2024-01-10T13:04:27,005           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-10T13:04:27,008           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-10T13:04:27,008                 even if it does not contain any `.py` files.
2024-01-10T13:04:27,008                 On the other hand, currently there is no concept of package data
2024-01-10T13:04:27,009                 directory, all directories are treated like packages.
2024-01-10T13:04:27,009           ********************************************************************************

2024-01-10T13:04:27,009   !!
2024-01-10T13:04:27,010     check.warn(importable)
2024-01-10T13:04:27,010   /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2024-01-10T13:04:27,010   !!

2024-01-10T13:04:27,010           ********************************************************************************
2024-01-10T13:04:27,010           ############################
2024-01-10T13:04:27,011           # Package would be ignored #
2024-01-10T13:04:27,011           ############################
2024-01-10T13:04:27,011           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2024-01-10T13:04:27,011           but it is absent from setuptools' `packages` configuration.

2024-01-10T13:04:27,011           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-10T13:04:27,012           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2024-01-10T13:04:27,012           to the `packages` configuration field.

2024-01-10T13:04:27,012           Alternatively, you can also rely on setuptools' discovery methods
2024-01-10T13:04:27,012           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-10T13:04:27,012           instead of `find_packages(...)`/`find:`).

2024-01-10T13:04:27,013           You can read more about "package discovery" on setuptools documentation page:

2024-01-10T13:04:27,013           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-10T13:04:27,013           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2024-01-10T13:04:27,013           already explicitly excluding 'moleculekit.interactions.pipi' via
2024-01-10T13:04:27,013           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-10T13:04:27,014           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-10T13:04:27,014           combination with a more fine grained `package-data` configuration.

2024-01-10T13:04:27,014           You can read more about "package data files" on setuptools documentation page:

2024-01-10T13:04:27,014           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-10T13:04:27,015           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-10T13:04:27,015                 even if it does not contain any `.py` files.
2024-01-10T13:04:27,015                 On the other hand, currently there is no concept of package data
2024-01-10T13:04:27,015                 directory, all directories are treated like packages.
2024-01-10T13:04:27,015           ********************************************************************************

2024-01-10T13:04:27,016   !!
2024-01-10T13:04:27,016     check.warn(importable)
2024-01-10T13:04:27,016   /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2024-01-10T13:04:27,016   !!

2024-01-10T13:04:27,016           ********************************************************************************
2024-01-10T13:04:27,017           ############################
2024-01-10T13:04:27,017           # Package would be ignored #
2024-01-10T13:04:27,017           ############################
2024-01-10T13:04:27,017           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2024-01-10T13:04:27,017           but it is absent from setuptools' `packages` configuration.

2024-01-10T13:04:27,017           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-10T13:04:27,018           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2024-01-10T13:04:27,018           to the `packages` configuration field.

2024-01-10T13:04:27,018           Alternatively, you can also rely on setuptools' discovery methods
2024-01-10T13:04:27,018           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-10T13:04:27,018           instead of `find_packages(...)`/`find:`).

2024-01-10T13:04:27,018           You can read more about "package discovery" on setuptools documentation page:

2024-01-10T13:04:27,019           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-10T13:04:27,019           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2024-01-10T13:04:27,019           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2024-01-10T13:04:27,019           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-10T13:04:27,019           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-10T13:04:27,019           combination with a more fine grained `package-data` configuration.

2024-01-10T13:04:27,020           You can read more about "package data files" on setuptools documentation page:

2024-01-10T13:04:27,020           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-10T13:04:27,020           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-10T13:04:27,020                 even if it does not contain any `.py` files.
2024-01-10T13:04:27,020                 On the other hand, currently there is no concept of package data
2024-01-10T13:04:27,021                 directory, all directories are treated like packages.
2024-01-10T13:04:27,021           ********************************************************************************

2024-01-10T13:04:27,021   !!
2024-01-10T13:04:27,021     check.warn(importable)
2024-01-10T13:04:27,021   /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2024-01-10T13:04:27,021   !!

2024-01-10T13:04:27,021           ********************************************************************************
2024-01-10T13:04:27,022           ############################
2024-01-10T13:04:27,022           # Package would be ignored #
2024-01-10T13:04:27,022           ############################
2024-01-10T13:04:27,022           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2024-01-10T13:04:27,022           but it is absent from setuptools' `packages` configuration.

2024-01-10T13:04:27,022           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-10T13:04:27,022           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2024-01-10T13:04:27,023           to the `packages` configuration field.

2024-01-10T13:04:27,023           Alternatively, you can also rely on setuptools' discovery methods
2024-01-10T13:04:27,023           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-10T13:04:27,023           instead of `find_packages(...)`/`find:`).

2024-01-10T13:04:27,023           You can read more about "package discovery" on setuptools documentation page:

2024-01-10T13:04:27,024           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-10T13:04:27,024           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2024-01-10T13:04:27,024           already explicitly excluding 'moleculekit.occupancy_utils' via
2024-01-10T13:04:27,024           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-10T13:04:27,024           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-10T13:04:27,024           combination with a more fine grained `package-data` configuration.

2024-01-10T13:04:27,024           You can read more about "package data files" on setuptools documentation page:

2024-01-10T13:04:27,025           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-10T13:04:27,025           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-10T13:04:27,025                 even if it does not contain any `.py` files.
2024-01-10T13:04:27,025                 On the other hand, currently there is no concept of package data
2024-01-10T13:04:27,025                 directory, all directories are treated like packages.
2024-01-10T13:04:27,025           ********************************************************************************

2024-01-10T13:04:27,026   !!
2024-01-10T13:04:27,026     check.warn(importable)
2024-01-10T13:04:27,026   /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2024-01-10T13:04:27,026   !!

2024-01-10T13:04:27,026           ********************************************************************************
2024-01-10T13:04:27,026           ############################
2024-01-10T13:04:27,026           # Package would be ignored #
2024-01-10T13:04:27,026           ############################
2024-01-10T13:04:27,027           Python recognizes 'moleculekit.share' as an importable package[^1],
2024-01-10T13:04:27,027           but it is absent from setuptools' `packages` configuration.

2024-01-10T13:04:27,027           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-10T13:04:27,027           package, please make sure that 'moleculekit.share' is explicitly added
2024-01-10T13:04:27,027           to the `packages` configuration field.

2024-01-10T13:04:27,027           Alternatively, you can also rely on setuptools' discovery methods
2024-01-10T13:04:27,028           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-10T13:04:27,028           instead of `find_packages(...)`/`find:`).

2024-01-10T13:04:27,028           You can read more about "package discovery" on setuptools documentation page:

2024-01-10T13:04:27,028           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-10T13:04:27,028           If you don't want 'moleculekit.share' to be distributed and are
2024-01-10T13:04:27,029           already explicitly excluding 'moleculekit.share' via
2024-01-10T13:04:27,029           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-10T13:04:27,029           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-10T13:04:27,029           combination with a more fine grained `package-data` configuration.

2024-01-10T13:04:27,029           You can read more about "package data files" on setuptools documentation page:

2024-01-10T13:04:27,029           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-10T13:04:27,030           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-10T13:04:27,030                 even if it does not contain any `.py` files.
2024-01-10T13:04:27,030                 On the other hand, currently there is no concept of package data
2024-01-10T13:04:27,030                 directory, all directories are treated like packages.
2024-01-10T13:04:27,030           ********************************************************************************

2024-01-10T13:04:27,030   !!
2024-01-10T13:04:27,031     check.warn(importable)
2024-01-10T13:04:27,031   /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2024-01-10T13:04:27,031   !!

2024-01-10T13:04:27,031           ********************************************************************************
2024-01-10T13:04:27,031           ############################
2024-01-10T13:04:27,031           # Package would be ignored #
2024-01-10T13:04:27,031           ############################
2024-01-10T13:04:27,032           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2024-01-10T13:04:27,032           but it is absent from setuptools' `packages` configuration.

2024-01-10T13:04:27,032           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-10T13:04:27,032           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2024-01-10T13:04:27,032           to the `packages` configuration field.

2024-01-10T13:04:27,032           Alternatively, you can also rely on setuptools' discovery methods
2024-01-10T13:04:27,033           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-10T13:04:27,033           instead of `find_packages(...)`/`find:`).

2024-01-10T13:04:27,033           You can read more about "package discovery" on setuptools documentation page:

2024-01-10T13:04:27,033           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-10T13:04:27,033           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2024-01-10T13:04:27,033           already explicitly excluding 'moleculekit.share.atomselect' via
2024-01-10T13:04:27,034           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-10T13:04:27,034           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-10T13:04:27,034           combination with a more fine grained `package-data` configuration.

2024-01-10T13:04:27,034           You can read more about "package data files" on setuptools documentation page:

2024-01-10T13:04:27,034           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-10T13:04:27,035           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-10T13:04:27,035                 even if it does not contain any `.py` files.
2024-01-10T13:04:27,035                 On the other hand, currently there is no concept of package data
2024-01-10T13:04:27,035                 directory, all directories are treated like packages.
2024-01-10T13:04:27,035           ********************************************************************************

2024-01-10T13:04:27,035   !!
2024-01-10T13:04:27,035     check.warn(importable)
2024-01-10T13:04:27,036   /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2024-01-10T13:04:27,036   !!

2024-01-10T13:04:27,036           ********************************************************************************
2024-01-10T13:04:27,036           ############################
2024-01-10T13:04:27,036           # Package would be ignored #
2024-01-10T13:04:27,036           ############################
2024-01-10T13:04:27,036           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2024-01-10T13:04:27,036           but it is absent from setuptools' `packages` configuration.

2024-01-10T13:04:27,037           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-10T13:04:27,037           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2024-01-10T13:04:27,037           to the `packages` configuration field.

2024-01-10T13:04:27,037           Alternatively, you can also rely on setuptools' discovery methods
2024-01-10T13:04:27,037           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-10T13:04:27,037           instead of `find_packages(...)`/`find:`).

2024-01-10T13:04:27,038           You can read more about "package discovery" on setuptools documentation page:

2024-01-10T13:04:27,038           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-10T13:04:27,038           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2024-01-10T13:04:27,038           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2024-01-10T13:04:27,038           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-10T13:04:27,038           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-10T13:04:27,039           combination with a more fine grained `package-data` configuration.

2024-01-10T13:04:27,039           You can read more about "package data files" on setuptools documentation page:

2024-01-10T13:04:27,039           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-10T13:04:27,039           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-10T13:04:27,040                 even if it does not contain any `.py` files.
2024-01-10T13:04:27,040                 On the other hand, currently there is no concept of package data
2024-01-10T13:04:27,040                 directory, all directories are treated like packages.
2024-01-10T13:04:27,040           ********************************************************************************

2024-01-10T13:04:27,040   !!
2024-01-10T13:04:27,040     check.warn(importable)
2024-01-10T13:04:27,040   /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2024-01-10T13:04:27,041   !!

2024-01-10T13:04:27,041           ********************************************************************************
2024-01-10T13:04:27,041           ############################
2024-01-10T13:04:27,041           # Package would be ignored #
2024-01-10T13:04:27,041           ############################
2024-01-10T13:04:27,041           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2024-01-10T13:04:27,041           but it is absent from setuptools' `packages` configuration.

2024-01-10T13:04:27,042           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-10T13:04:27,042           package, please make sure that 'moleculekit.tmalign' is explicitly added
2024-01-10T13:04:27,042           to the `packages` configuration field.

2024-01-10T13:04:27,042           Alternatively, you can also rely on setuptools' discovery methods
2024-01-10T13:04:27,042           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-10T13:04:27,042           instead of `find_packages(...)`/`find:`).

2024-01-10T13:04:27,043           You can read more about "package discovery" on setuptools documentation page:

2024-01-10T13:04:27,043           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-10T13:04:27,043           If you don't want 'moleculekit.tmalign' to be distributed and are
2024-01-10T13:04:27,043           already explicitly excluding 'moleculekit.tmalign' via
2024-01-10T13:04:27,043           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-10T13:04:27,044           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-10T13:04:27,044           combination with a more fine grained `package-data` configuration.

2024-01-10T13:04:27,044           You can read more about "package data files" on setuptools documentation page:

2024-01-10T13:04:27,044           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-10T13:04:27,045           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-10T13:04:27,045                 even if it does not contain any `.py` files.
2024-01-10T13:04:27,045                 On the other hand, currently there is no concept of package data
2024-01-10T13:04:27,045                 directory, all directories are treated like packages.
2024-01-10T13:04:27,045           ********************************************************************************

2024-01-10T13:04:27,045   !!
2024-01-10T13:04:27,045     check.warn(importable)
2024-01-10T13:04:27,046   /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2024-01-10T13:04:27,046   !!

2024-01-10T13:04:27,046           ********************************************************************************
2024-01-10T13:04:27,046           ############################
2024-01-10T13:04:27,046           # Package would be ignored #
2024-01-10T13:04:27,046           ############################
2024-01-10T13:04:27,046           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2024-01-10T13:04:27,047           but it is absent from setuptools' `packages` configuration.

2024-01-10T13:04:27,047           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-10T13:04:27,047           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2024-01-10T13:04:27,047           to the `packages` configuration field.

2024-01-10T13:04:27,047           Alternatively, you can also rely on setuptools' discovery methods
2024-01-10T13:04:27,047           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-10T13:04:27,048           instead of `find_packages(...)`/`find:`).

2024-01-10T13:04:27,048           You can read more about "package discovery" on setuptools documentation page:

2024-01-10T13:04:27,048           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-10T13:04:27,048           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2024-01-10T13:04:27,048           already explicitly excluding 'moleculekit.tmalign.include' via
2024-01-10T13:04:27,049           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-10T13:04:27,049           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-10T13:04:27,049           combination with a more fine grained `package-data` configuration.

2024-01-10T13:04:27,049           You can read more about "package data files" on setuptools documentation page:

2024-01-10T13:04:27,049           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-10T13:04:27,050           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-10T13:04:27,050                 even if it does not contain any `.py` files.
2024-01-10T13:04:27,050                 On the other hand, currently there is no concept of package data
2024-01-10T13:04:27,050                 directory, all directories are treated like packages.
2024-01-10T13:04:27,050           ********************************************************************************

2024-01-10T13:04:27,050   !!
2024-01-10T13:04:27,051     check.warn(importable)
2024-01-10T13:04:27,051   /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2024-01-10T13:04:27,051   !!

2024-01-10T13:04:27,051           ********************************************************************************
2024-01-10T13:04:27,051           ############################
2024-01-10T13:04:27,051           # Package would be ignored #
2024-01-10T13:04:27,051           ############################
2024-01-10T13:04:27,051           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2024-01-10T13:04:27,052           but it is absent from setuptools' `packages` configuration.

2024-01-10T13:04:27,052           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-10T13:04:27,052           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2024-01-10T13:04:27,052           to the `packages` configuration field.

2024-01-10T13:04:27,052           Alternatively, you can also rely on setuptools' discovery methods
2024-01-10T13:04:27,052           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-10T13:04:27,053           instead of `find_packages(...)`/`find:`).

2024-01-10T13:04:27,053           You can read more about "package discovery" on setuptools documentation page:

2024-01-10T13:04:27,053           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-10T13:04:27,053           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2024-01-10T13:04:27,053           already explicitly excluding 'moleculekit.tmalign.src' via
2024-01-10T13:04:27,054           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-10T13:04:27,054           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-10T13:04:27,054           combination with a more fine grained `package-data` configuration.

2024-01-10T13:04:27,054           You can read more about "package data files" on setuptools documentation page:

2024-01-10T13:04:27,054           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-10T13:04:27,055           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-10T13:04:27,055                 even if it does not contain any `.py` files.
2024-01-10T13:04:27,055                 On the other hand, currently there is no concept of package data
2024-01-10T13:04:27,055                 directory, all directories are treated like packages.
2024-01-10T13:04:27,055           ********************************************************************************

2024-01-10T13:04:27,055   !!
2024-01-10T13:04:27,055     check.warn(importable)
2024-01-10T13:04:27,056   /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2024-01-10T13:04:27,056   !!

2024-01-10T13:04:27,056           ********************************************************************************
2024-01-10T13:04:27,056           ############################
2024-01-10T13:04:27,056           # Package would be ignored #
2024-01-10T13:04:27,056           ############################
2024-01-10T13:04:27,056           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2024-01-10T13:04:27,057           but it is absent from setuptools' `packages` configuration.

2024-01-10T13:04:27,057           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-10T13:04:27,057           package, please make sure that 'moleculekit.wrapping' is explicitly added
2024-01-10T13:04:27,057           to the `packages` configuration field.

2024-01-10T13:04:27,057           Alternatively, you can also rely on setuptools' discovery methods
2024-01-10T13:04:27,057           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-10T13:04:27,058           instead of `find_packages(...)`/`find:`).

2024-01-10T13:04:27,058           You can read more about "package discovery" on setuptools documentation page:

2024-01-10T13:04:27,058           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-10T13:04:27,058           If you don't want 'moleculekit.wrapping' to be distributed and are
2024-01-10T13:04:27,058           already explicitly excluding 'moleculekit.wrapping' via
2024-01-10T13:04:27,059           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-10T13:04:27,059           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-10T13:04:27,059           combination with a more fine grained `package-data` configuration.

2024-01-10T13:04:27,059           You can read more about "package data files" on setuptools documentation page:

2024-01-10T13:04:27,059           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-10T13:04:27,060           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-10T13:04:27,060                 even if it does not contain any `.py` files.
2024-01-10T13:04:27,060                 On the other hand, currently there is no concept of package data
2024-01-10T13:04:27,060                 directory, all directories are treated like packages.
2024-01-10T13:04:27,060           ********************************************************************************

2024-01-10T13:04:27,060   !!
2024-01-10T13:04:27,060     check.warn(importable)
2024-01-10T13:04:27,060   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-01-10T13:04:27,061   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-01-10T13:04:27,061   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-01-10T13:04:27,061   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-01-10T13:04:27,061   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-01-10T13:04:27,061   creating build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-01-10T13:04:27,061   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-01-10T13:04:27,070   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-01-10T13:04:27,072   creating build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-01-10T13:04:27,073   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-01-10T13:04:27,097   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-01-10T13:04:27,099   creating build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-01-10T13:04:27,100   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-01-10T13:04:27,158   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-01-10T13:04:27,160   creating build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-01-10T13:04:27,161   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-01-10T13:04:27,163   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-01-10T13:04:27,165   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-01-10T13:04:27,379   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2024-01-10T13:04:27,380   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2024-01-10T13:04:27,382   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr
2024-01-10T13:04:27,383   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,384   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,386   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,388   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,390   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,392   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,394   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,397   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,399   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,402   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,404   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,406   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,408   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,410   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,412   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,414   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,416   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,418   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,420   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,422   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,424   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,426   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,429   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,431   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,433   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,435   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,437   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,439   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,441   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,444   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,446   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,448   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,451   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,452   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,454   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,456   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,458   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,460   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,463   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,465   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,467   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,469   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,471   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,473   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,475   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,477   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,479   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,481   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,483   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,485   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,488   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,490   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,492   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,494   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,497   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,499   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,501   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,503   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,505   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,507   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,509   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,511   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,514   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,516   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,518   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,520   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,523   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,524   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,527   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,529   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,531   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,533   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,536   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,538   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,540   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,542   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,544   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,546   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,551   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,767   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,769   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,772   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,775   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,777   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,780   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,782   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,785   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,787   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,790   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,792   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,795   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,797   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,800   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,803   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,805   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,808   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,810   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,812   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,816   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,818   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,820   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,823   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,826   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,829   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,831   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,834   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,836   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,839   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,842   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,844   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,847   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,849   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,852   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,854   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,857   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,859   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,862   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,865   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,868   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,870   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,872   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,873   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,875   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,877   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,879   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,882   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,884   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,886   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,888   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,890   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,892   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,894   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,896   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,898   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,900   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,902   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,904   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,906   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,908   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,910   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,912   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,914   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,916   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,918   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,920   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,921   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,924   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,926   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,928   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,930   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,932   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,934   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,935   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,938   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,940   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,942   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,945   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,947   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,949   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,950   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,953   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,955   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,957   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,959   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,961   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,963   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,965   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,968   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,970   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,971   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,973   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,975   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,977   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,979   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,981   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,983   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-01-10T13:04:27,985   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-01-10T13:04:27,986   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-01-10T13:04:28,008   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-01-10T13:04:28,011   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-01-10T13:04:28,012   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2024-01-10T13:04:28,013   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2024-01-10T13:04:28,015   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-01-10T13:04:28,016   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-01-10T13:04:28,021   creating build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-01-10T13:04:28,022   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-01-10T13:04:28,048   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-01-10T13:04:28,051   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-01-10T13:04:28,051   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-01-10T13:04:28,071   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-01-10T13:04:28,074   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-01-10T13:04:28,075   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-01-10T13:04:28,095   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-01-10T13:04:28,098   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-01-10T13:04:28,099   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-01-10T13:04:28,123   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-01-10T13:04:28,125   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-01-10T13:04:28,126   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-01-10T13:04:28,152   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-01-10T13:04:28,155   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-01-10T13:04:28,156   copying moleculekit/fileformats/binpos/binpos.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-01-10T13:04:28,170   copying moleculekit/fileformats/binpos/binpos.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-01-10T13:04:28,173   copying moleculekit/fileformats/binpos/binposlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-01-10T13:04:28,174   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-01-10T13:04:28,175   copying moleculekit/fileformats/binpos/include/binposplugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-01-10T13:04:28,177   copying moleculekit/fileformats/binpos/include/largefiles.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-01-10T13:04:28,179   copying moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-01-10T13:04:28,182   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-01-10T13:04:28,183   copying moleculekit/fileformats/binpos/src/binposplugin.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-01-10T13:04:28,186   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-01-10T13:04:28,187   copying moleculekit/fileformats/dcd/dcd.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-01-10T13:04:28,201   copying moleculekit/fileformats/dcd/dcd.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-01-10T13:04:28,204   copying moleculekit/fileformats/dcd/dcdlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-01-10T13:04:28,206   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-01-10T13:04:28,207   copying moleculekit/fileformats/dcd/include/dcdplugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-01-10T13:04:28,209   copying moleculekit/fileformats/dcd/include/endianswap.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-01-10T13:04:28,211   copying moleculekit/fileformats/dcd/include/fastio.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-01-10T13:04:28,214   copying moleculekit/fileformats/dcd/include/largefiles.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-01-10T13:04:28,216   copying moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-01-10T13:04:28,219   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-01-10T13:04:28,220   copying moleculekit/fileformats/dcd/src/dcdplugin.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-01-10T13:04:28,223   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-01-10T13:04:28,224   copying moleculekit/fileformats/xtc/trr.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-01-10T13:04:28,244   copying moleculekit/fileformats/xtc/trr.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-01-10T13:04:28,247   copying moleculekit/fileformats/xtc/trrlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-01-10T13:04:28,248   copying moleculekit/fileformats/xtc/xdrlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-01-10T13:04:28,250   copying moleculekit/fileformats/xtc/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-01-10T13:04:28,270   copying moleculekit/fileformats/xtc/xtc.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-01-10T13:04:28,272   copying moleculekit/fileformats/xtc/xtclib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-01-10T13:04:28,274   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-01-10T13:04:28,276   copying moleculekit/fileformats/xtc/include/trr_header.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-01-10T13:04:28,278   copying moleculekit/fileformats/xtc/include/xdr_seek.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-01-10T13:04:28,280   copying moleculekit/fileformats/xtc/include/xdrfile.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-01-10T13:04:28,283   copying moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-01-10T13:04:28,286   copying moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-01-10T13:04:28,288   copying moleculekit/fileformats/xtc/include/xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-01-10T13:04:28,291   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-01-10T13:04:28,292   copying moleculekit/fileformats/xtc/src/xdr_seek.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-01-10T13:04:28,294   copying moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-01-10T13:04:28,298   copying moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-01-10T13:04:28,301   copying moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-01-10T13:04:28,304   copying moleculekit/fileformats/xtc/src/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-01-10T13:04:28,317   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2024-01-10T13:04:28,317   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.8.20'
2024-01-10T13:04:28,317   running build_ext
2024-01-10T13:04:28,329   building 'moleculekit.interactions.hbonds' extension
2024-01-10T13:04:28,330   creating build/temp.linux-armv7l-cpython-39
2024-01-10T13:04:28,331   creating build/temp.linux-armv7l-cpython-39/moleculekit
2024-01-10T13:04:28,332   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions
2024-01-10T13:04:28,333   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-01-10T13:04:28,334   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -O3
2024-01-10T13:04:28,605   In file included from /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-01-10T13:04:28,606                    from /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-01-10T13:04:28,606                    from /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-01-10T13:04:28,606                    from moleculekit/interactions/hbonds/hbonds.cpp:1230:
2024-01-10T13:04:28,606   /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-01-10T13:04:28,607      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-01-10T13:04:28,607         |  ^~~~~~~
2024-01-10T13:04:51,738   moleculekit/interactions/hbonds/hbonds.cpp: In function ‘PyObject* __pyx_pw_11moleculekit_12interactions_6hbonds_1calculate(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2024-01-10T13:04:51,738   moleculekit/interactions/hbonds/hbonds.cpp:21001:52: warning: ‘__pyx_v_d_idx_h’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-01-10T13:04:51,738   21001 |             (__pyx_v_results[__pyx_v_f]).push_back(__pyx_v_d_idx_h);
2024-01-10T13:04:51,739         |                                                    ^~~~~~~~~~~~~~~
2024-01-10T13:04:51,739   moleculekit/interactions/hbonds/hbonds.cpp:20014:57: note: ‘__pyx_v_d_idx_h’ was declared here
2024-01-10T13:04:51,739   20014 |   __pyx_t_11moleculekit_12interactions_6hbonds_UINT32_t __pyx_v_d_idx_h;
2024-01-10T13:04:51,739         |                                                         ^~~~~~~~~~~~~~~
2024-01-10T13:04:54,867   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so
2024-01-10T13:04:55,188   building 'moleculekit.interactions.pipi' extension
2024-01-10T13:04:55,189   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-01-10T13:04:55,190   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -O3
2024-01-10T13:04:55,422   In file included from /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-01-10T13:04:55,422                    from /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-01-10T13:04:55,423                    from /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-01-10T13:04:55,423                    from moleculekit/interactions/pipi/pipi.cpp:1230:
2024-01-10T13:04:55,423   /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-01-10T13:04:55,423      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-01-10T13:04:55,423         |  ^~~~~~~
2024-01-10T13:05:23,825   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so
2024-01-10T13:05:24,142   building 'moleculekit.interactions.cationpi' extension
2024-01-10T13:05:24,143   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-01-10T13:05:24,144   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -O3
2024-01-10T13:05:24,376   In file included from /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-01-10T13:05:24,377                    from /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-01-10T13:05:24,377                    from /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-01-10T13:05:24,377                    from moleculekit/interactions/cationpi/cationpi.cpp:1230:
2024-01-10T13:05:24,377   /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-01-10T13:05:24,377      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-01-10T13:05:24,377         |  ^~~~~~~
2024-01-10T13:05:52,461   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so
2024-01-10T13:05:52,781   building 'moleculekit.interactions.sigmahole' extension
2024-01-10T13:05:52,781   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-01-10T13:05:52,782   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -O3
2024-01-10T13:05:53,252   In file included from /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-01-10T13:05:53,253                    from /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-01-10T13:05:53,253                    from /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-01-10T13:05:53,253                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1230:
2024-01-10T13:05:53,253   /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-01-10T13:05:53,254      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-01-10T13:05:53,254         |  ^~~~~~~
2024-01-10T13:06:20,695   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so
2024-01-10T13:06:21,015   building 'moleculekit.wrapping' extension
2024-01-10T13:06:21,015   creating build/temp.linux-armv7l-cpython-39/moleculekit/wrapping
2024-01-10T13:06:21,016   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -O3
2024-01-10T13:06:21,248   In file included from /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-01-10T13:06:21,248                    from /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-01-10T13:06:21,248                    from /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-01-10T13:06:21,248                    from moleculekit/wrapping/wrapping.cpp:1230:
2024-01-10T13:06:21,248   /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-01-10T13:06:21,249      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-01-10T13:06:21,249         |  ^~~~~~~
2024-01-10T13:06:47,123   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so
2024-01-10T13:06:47,339   building 'moleculekit.bondguesser_utils' extension
2024-01-10T13:06:47,340   creating build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-01-10T13:06:47,340   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2024-01-10T13:06:47,578   In file included from /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-01-10T13:06:47,578                    from /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-01-10T13:06:47,578                    from /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-01-10T13:06:47,579                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1230:
2024-01-10T13:06:47,579   /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-01-10T13:06:47,579      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-01-10T13:06:47,579         |  ^~~~~~~
2024-01-10T13:06:49,124   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2024-01-10T13:06:49,124   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19783:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-01-10T13:06:49,125   19783 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2024-01-10T13:06:49,125         |                       ~~~~~~~~~~^~~~~~~~~~~
2024-01-10T13:06:49,125   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19795:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-01-10T13:06:49,125   19795 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2024-01-10T13:06:49,125         |                         ~~~~~~~~~~^~~~~~~~~~~
2024-01-10T13:06:49,125   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19807:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-01-10T13:06:49,126   19807 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2024-01-10T13:06:49,126         |                           ~~~~~~~~~~^~~~~~~~~~~
2024-01-10T13:06:49,126   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19846:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-01-10T13:06:49,126   19846 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-01-10T13:06:49,126         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-01-10T13:06:49,126   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19885:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-01-10T13:06:49,126   19885 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-01-10T13:06:49,127         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-01-10T13:06:49,127   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19924:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-01-10T13:06:49,127   19924 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-01-10T13:06:49,127         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-01-10T13:06:49,127   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19963:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-01-10T13:06:49,127   19963 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-01-10T13:06:49,127         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-01-10T13:06:49,128   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19969:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-01-10T13:06:49,128   19969 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-01-10T13:06:49,128         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-01-10T13:06:49,128   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20010:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-01-10T13:06:49,128   20010 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-01-10T13:06:49,128         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-01-10T13:06:49,128   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20016:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-01-10T13:06:49,129   20016 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-01-10T13:06:49,129         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-01-10T13:06:49,129   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20057:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-01-10T13:06:49,129   20057 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-01-10T13:06:49,129         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-01-10T13:06:49,129   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20063:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-01-10T13:06:49,129   20063 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-01-10T13:06:49,130         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-01-10T13:06:49,130   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20104:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-01-10T13:06:49,130   20104 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-01-10T13:06:49,130         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-01-10T13:06:49,130   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20157:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-01-10T13:06:49,130   20157 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-01-10T13:06:49,130         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-01-10T13:06:49,130   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20204:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-01-10T13:06:49,131   20204 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-01-10T13:06:49,131         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-01-10T13:06:49,131   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20245:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-01-10T13:06:49,131   20245 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-01-10T13:06:49,131         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-01-10T13:06:49,131   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20251:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-01-10T13:06:49,132   20251 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-01-10T13:06:49,132         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-01-10T13:06:49,132   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20257:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-01-10T13:06:49,132   20257 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-01-10T13:06:49,132         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-01-10T13:06:49,132   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20304:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-01-10T13:06:49,132   20304 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-01-10T13:06:49,132         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-01-10T13:06:49,133   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20310:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-01-10T13:06:49,133   20310 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-01-10T13:06:49,133         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-01-10T13:06:49,133   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20351:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-01-10T13:06:49,133   20351 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-01-10T13:06:49,133         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-01-10T13:06:49,133   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20363:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-01-10T13:06:49,134   20363 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-01-10T13:06:49,134         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-01-10T13:06:49,134   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20416:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-01-10T13:06:49,134   20416 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-01-10T13:06:49,134         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-01-10T13:06:49,153   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2024-01-10T13:06:49,153   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21038:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-01-10T13:06:49,153   21038 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2024-01-10T13:06:49,153         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2024-01-10T13:06:49,154   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21075:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-01-10T13:06:49,154   21075 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2024-01-10T13:06:49,154         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-01-10T13:07:12,254   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so
2024-01-10T13:07:12,555   building 'moleculekit.atomselect_utils' extension
2024-01-10T13:07:12,556   creating build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-01-10T13:07:12,556   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -O3
2024-01-10T13:07:12,792   In file included from /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-01-10T13:07:12,793                    from /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-01-10T13:07:12,793                    from /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-01-10T13:07:12,793                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1247:
2024-01-10T13:07:12,793   /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-01-10T13:07:12,793      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-01-10T13:07:12,793         |  ^~~~~~~
2024-01-10T13:07:15,509   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2024-01-10T13:07:15,510   moleculekit/atomselect_utils/atomselect_utils.cpp:23217:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-01-10T13:07:15,510   23217 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2024-01-10T13:07:15,510         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-01-10T13:07:15,515   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-01-10T13:07:15,515   moleculekit/atomselect_utils/atomselect_utils.cpp:23469:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-01-10T13:07:15,515   23469 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-01-10T13:07:15,515         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-01-10T13:07:15,520   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-01-10T13:07:15,520   moleculekit/atomselect_utils/atomselect_utils.cpp:23736:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-01-10T13:07:15,521   23736 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-01-10T13:07:15,521         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-01-10T13:07:45,468   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so
2024-01-10T13:07:45,789   building 'moleculekit.distance_utils' extension
2024-01-10T13:07:45,790   creating build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-01-10T13:07:45,791   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -O3
2024-01-10T13:07:46,025   In file included from /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-01-10T13:07:46,025                    from /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-01-10T13:07:46,025                    from /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-01-10T13:07:46,025                    from moleculekit/distance_utils/distance_utils.cpp:1230:
2024-01-10T13:07:46,026   /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-01-10T13:07:46,026      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-01-10T13:07:46,026         |  ^~~~~~~
2024-01-10T13:08:21,116   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so
2024-01-10T13:08:21,460   building 'moleculekit.occupancy_utils' extension
2024-01-10T13:08:21,461   creating build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-01-10T13:08:21,462   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -O3
2024-01-10T13:08:21,692   In file included from /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-01-10T13:08:21,693                    from /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-01-10T13:08:21,693                    from /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-01-10T13:08:21,693                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1230:
2024-01-10T13:08:21,693   /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-01-10T13:08:21,693      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-01-10T13:08:21,693         |  ^~~~~~~
2024-01-10T13:08:44,716   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so
2024-01-10T13:08:44,929   building 'moleculekit.xtc' extension
2024-01-10T13:08:44,930   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats
2024-01-10T13:08:44,930   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-01-10T13:08:44,931   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-01-10T13:08:44,932   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o
2024-01-10T13:08:45,168   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-10T13:08:45,169      66 |  "OK",
2024-01-10T13:08:45,169         |  ^~~~
2024-01-10T13:08:45,169   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-10T13:08:45,169      67 |  "Header",
2024-01-10T13:08:45,169         |  ^~~~~~~~
2024-01-10T13:08:45,169   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-10T13:08:45,169      68 |  "String",
2024-01-10T13:08:45,170         |  ^~~~~~~~
2024-01-10T13:08:45,170   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-10T13:08:45,170      69 |  "Double",
2024-01-10T13:08:45,170         |  ^~~~~~~~
2024-01-10T13:08:45,170   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-10T13:08:45,170      70 |  "Integer",
2024-01-10T13:08:45,170         |  ^~~~~~~~~
2024-01-10T13:08:45,171   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-10T13:08:45,171      71 |  "Float",
2024-01-10T13:08:45,171         |  ^~~~~~~
2024-01-10T13:08:45,171   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-10T13:08:45,171      72 |  "Unsigned integer",
2024-01-10T13:08:45,171         |  ^~~~~~~~~~~~~~~~~~
2024-01-10T13:08:45,171   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-10T13:08:45,171      73 |  "Compressed 3D coordinate",
2024-01-10T13:08:45,172         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-01-10T13:08:45,172   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-10T13:08:45,172      74 |  "Closing file",
2024-01-10T13:08:45,172         |  ^~~~~~~~~~~~~~
2024-01-10T13:08:45,172   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-10T13:08:45,172      75 |  "Magic number",
2024-01-10T13:08:45,172         |  ^~~~~~~~~~~~~~
2024-01-10T13:08:45,173   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-10T13:08:45,173      76 |  "Not enough memory",
2024-01-10T13:08:45,173         |  ^~~~~~~~~~~~~~~~~~~
2024-01-10T13:08:45,173   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-10T13:08:45,173      77 |  "End of file",
2024-01-10T13:08:45,173         |  ^~~~~~~~~~~~~
2024-01-10T13:08:45,173   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-10T13:08:45,173      78 |  "File not found"
2024-01-10T13:08:45,174         |  ^~~~~~~~~~~~~~~~
2024-01-10T13:08:45,178   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-01-10T13:08:45,178   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-10T13:08:45,178     459 |     while (size >= num && num_of_bits < 32)
2024-01-10T13:08:45,178         |            ~~~~~^~~~~~
2024-01-10T13:08:45,178   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-01-10T13:08:45,179   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-10T13:08:45,179     505 |     while (bytes[num_of_bytes] >= num)
2024-01-10T13:08:45,179         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-01-10T13:08:45,181   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-01-10T13:08:45,181   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-10T13:08:45,181     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-01-10T13:08:45,181         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-01-10T13:08:45,182   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-10T13:08:45,182     616 |   for (i = 0; i < num_of_bytes; i++)
2024-01-10T13:08:45,182         |               ~~^~~~~~~~~~~~~~
2024-01-10T13:08:45,182   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-10T13:08:45,182     624 |   for (i = 0; i < num_of_bytes-1; i++)
2024-01-10T13:08:45,182         |               ~~^~~~~~~~~~~~~~~~
2024-01-10T13:08:45,182   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-01-10T13:08:45,183   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-10T13:08:45,183     664 |   if (lastbits < num_of_bits)
2024-01-10T13:08:45,183         |       ~~~~~~~~~^~~~~~~~~~~~~
2024-01-10T13:08:45,186   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-01-10T13:08:45,186   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-10T13:08:45,186     785 |  if(size3>xfp->buf1size)
2024-01-10T13:08:45,186         |     ~~~~~^~~~~~~~~~~~~~
2024-01-10T13:08:45,188   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-10T13:08:45,188     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-01-10T13:08:45,188         |                   ^
2024-01-10T13:08:45,190   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-10T13:08:45,191     932 |     if(countmjh >= size3 ) { return -1; }
2024-01-10T13:08:45,191         |        ~~~~~~~~~^~~~~~~~
2024-01-10T13:08:45,191   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-10T13:08:45,191     935 |     if(countmjh >= size3 ) { return -1; }
2024-01-10T13:08:45,191         |        ~~~~~~~~~^~~~~~~~
2024-01-10T13:08:45,191   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-10T13:08:45,192     938 |     if(countmjh >= size3 ) { return -1; }
2024-01-10T13:08:45,192         |        ~~~~~~~~~^~~~~~~~
2024-01-10T13:08:45,192   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-10T13:08:45,192     945 |     if(countmjh >= size3 ) { return -1; }
2024-01-10T13:08:45,192         |        ~~~~~~~~~^~~~~~~~
2024-01-10T13:08:45,192   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-10T13:08:45,192     948 |     if(countmjh >= size3 ) { return -1; }
2024-01-10T13:08:45,192         |        ~~~~~~~~~^~~~~~~~
2024-01-10T13:08:45,193   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-10T13:08:45,193     951 |     if(countmjh >= size3 ) { return -1; }
2024-01-10T13:08:45,193         |        ~~~~~~~~~^~~~~~~~
2024-01-10T13:08:45,193   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-01-10T13:08:45,193     756 |  int smallidx,  minidx, maxidx;
2024-01-10T13:08:45,193         |                 ^~~~~~
2024-01-10T13:08:45,193   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-01-10T13:08:45,193     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-01-10T13:08:45,194         |                         ^~~~~~
2024-01-10T13:08:45,194   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-01-10T13:08:45,194     763 |  int errval=1;
2024-01-10T13:08:45,194         |      ^~~~~~
2024-01-10T13:08:45,195   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-01-10T13:08:45,195   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-10T13:08:45,195    1011 |  if(size3>xfp->buf1size)
2024-01-10T13:08:45,195         |     ~~~~~^~~~~~~~~~~~~~
2024-01-10T13:08:45,197   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-10T13:08:45,197    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2024-01-10T13:08:45,197         |                     ~~~~~~~~^~~~~~~
2024-01-10T13:08:45,197   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-10T13:08:45,198    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2024-01-10T13:08:45,198         |                    ~~~~~~~~^~~~~~~
2024-01-10T13:08:45,198   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-10T13:08:45,198    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2024-01-10T13:08:45,198         |                    ~~~~~~~~^~~~~~~
2024-01-10T13:08:45,200   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-10T13:08:45,200    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-01-10T13:08:45,200         |                  ^
2024-01-10T13:08:45,200   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-10T13:08:45,200    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-01-10T13:08:45,200         |                   ^
2024-01-10T13:08:45,204   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-10T13:08:45,204    1275 |  if(tmp==(unsigned int)buf2[0])
2024-01-10T13:08:45,204         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-01-10T13:08:45,204   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-01-10T13:08:45,205    1001 |  int errval;
2024-01-10T13:08:45,205         |      ^~~~~~
2024-01-10T13:08:45,207   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-01-10T13:08:45,207   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-10T13:08:45,208    1316 |  if(size3>xfp->buf1size)
2024-01-10T13:08:45,208         |     ~~~~~^~~~~~~~~~~~~~
2024-01-10T13:08:45,209   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-10T13:08:45,209    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-01-10T13:08:45,209         |                   ^
2024-01-10T13:08:45,212   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-01-10T13:08:45,212    1289 |  int smallidx,  maxidx, minidx;
2024-01-10T13:08:45,212         |                         ^~~~~~
2024-01-10T13:08:45,212   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-01-10T13:08:45,213    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-01-10T13:08:45,213         |                         ^~~~~~
2024-01-10T13:08:45,213   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-01-10T13:08:45,213    1297 |  int errval=1;
2024-01-10T13:08:45,213         |      ^~~~~~
2024-01-10T13:08:45,214   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-01-10T13:08:45,214   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-10T13:08:45,215    1513 |  if(size3>xfp->buf1size) {
2024-01-10T13:08:45,215         |     ~~~~~^~~~~~~~~~~~~~
2024-01-10T13:08:45,218   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-10T13:08:45,219    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-01-10T13:08:45,219         |                  ^
2024-01-10T13:08:45,219   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-10T13:08:45,219    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-01-10T13:08:45,219         |                   ^
2024-01-10T13:08:45,223   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-10T13:08:45,223    1743 |  if(tmp==(unsigned int)buf2[0])
2024-01-10T13:08:45,223         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-01-10T13:08:45,223   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-01-10T13:08:45,223    1504 |  int errval=1;
2024-01-10T13:08:45,223         |      ^~~~~~
2024-01-10T13:08:47,448   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.o
2024-01-10T13:08:47,703   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.o
2024-01-10T13:08:48,278   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2024-01-10T13:08:48,278   moleculekit/fileformats/xtc/src/xtc.cpp:238:23: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-10T13:08:48,278     238 |   for (aidx = 0; aidx < natoms; aidx++)
2024-01-10T13:08:48,279         |                  ~~~~~^~~~~~~~
2024-01-10T13:08:48,279   moleculekit/fileformats/xtc/src/xtc.cpp:207:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2024-01-10T13:08:48,279     207 |  int nf3 = nframes * 3; // Precalculate 3 * nframes for the coordinate lookup macro
2024-01-10T13:08:48,279         |      ^~~
2024-01-10T13:08:48,286   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2024-01-10T13:08:48,286   moleculekit/fileformats/xtc/src/xtc.cpp:418:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2024-01-10T13:08:48,286     418 |  int nf3 = nframes * 3;
2024-01-10T13:08:48,286         |      ^~~
2024-01-10T13:08:48,288   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2024-01-10T13:08:48,288   moleculekit/fileformats/xtc/src/xtc.cpp:548:24: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-10T13:08:48,288     548 |    for (aidx = 0; aidx < natoms; aidx++)
2024-01-10T13:08:48,288         |                   ~~~~~^~~~~~~~
2024-01-10T13:08:48,290   moleculekit/fileformats/xtc/src/xtc.cpp:617:24: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-10T13:08:48,291     617 |    for (aidx = 0; aidx < natoms; aidx++)
2024-01-10T13:08:48,291         |                   ~~~~~^~~~~~~~
2024-01-10T13:08:48,291   moleculekit/fileformats/xtc/src/xtc.cpp:491:6: warning: unused variable ‘reading_index’ [-Wunused-variable]
2024-01-10T13:08:48,291     491 |  int reading_index = 0;
2024-01-10T13:08:48,291         |      ^~~~~~~~~~~~~
2024-01-10T13:08:48,291   moleculekit/fileformats/xtc/src/xtc.cpp:492:6: warning: unused variable ‘writing_index’ [-Wunused-variable]
2024-01-10T13:08:48,291     492 |  int writing_index = 0;
2024-01-10T13:08:48,291         |      ^~~~~~~~~~~~~
2024-01-10T13:08:49,071   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.o
2024-01-10T13:08:49,313   In file included from /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-01-10T13:08:49,314                    from /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-01-10T13:08:49,314                    from /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-01-10T13:08:49,314                    from moleculekit/fileformats/xtc/xtc.cpp:1234:
2024-01-10T13:08:49,314   /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-01-10T13:08:49,314      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-01-10T13:08:49,315         |  ^~~~~~~
2024-01-10T13:09:09,430   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so
2024-01-10T13:09:09,742   building 'moleculekit.trr' extension
2024-01-10T13:09:09,743   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdr_seek.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.o
2024-01-10T13:09:09,859   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o
2024-01-10T13:09:10,090   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-10T13:09:10,090      66 |  "OK",
2024-01-10T13:09:10,090         |  ^~~~
2024-01-10T13:09:10,090   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-10T13:09:10,090      67 |  "Header",
2024-01-10T13:09:10,090         |  ^~~~~~~~
2024-01-10T13:09:10,091   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-10T13:09:10,091      68 |  "String",
2024-01-10T13:09:10,091         |  ^~~~~~~~
2024-01-10T13:09:10,091   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-10T13:09:10,091      69 |  "Double",
2024-01-10T13:09:10,091         |  ^~~~~~~~
2024-01-10T13:09:10,091   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-10T13:09:10,092      70 |  "Integer",
2024-01-10T13:09:10,092         |  ^~~~~~~~~
2024-01-10T13:09:10,092   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-10T13:09:10,092      71 |  "Float",
2024-01-10T13:09:10,092         |  ^~~~~~~
2024-01-10T13:09:10,092   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-10T13:09:10,092      72 |  "Unsigned integer",
2024-01-10T13:09:10,093         |  ^~~~~~~~~~~~~~~~~~
2024-01-10T13:09:10,093   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-10T13:09:10,093      73 |  "Compressed 3D coordinate",
2024-01-10T13:09:10,093         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-01-10T13:09:10,093   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-10T13:09:10,093      74 |  "Closing file",
2024-01-10T13:09:10,093         |  ^~~~~~~~~~~~~~
2024-01-10T13:09:10,093   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-10T13:09:10,094      75 |  "Magic number",
2024-01-10T13:09:10,094         |  ^~~~~~~~~~~~~~
2024-01-10T13:09:10,094   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-10T13:09:10,094      76 |  "Not enough memory",
2024-01-10T13:09:10,094         |  ^~~~~~~~~~~~~~~~~~~
2024-01-10T13:09:10,094   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-10T13:09:10,094      77 |  "End of file",
2024-01-10T13:09:10,095         |  ^~~~~~~~~~~~~
2024-01-10T13:09:10,095   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-01-10T13:09:10,095      78 |  "File not found"
2024-01-10T13:09:10,095         |  ^~~~~~~~~~~~~~~~
2024-01-10T13:09:10,099   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-01-10T13:09:10,099   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-10T13:09:10,099     459 |     while (size >= num && num_of_bits < 32)
2024-01-10T13:09:10,099         |            ~~~~~^~~~~~
2024-01-10T13:09:10,100   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-01-10T13:09:10,100   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-10T13:09:10,100     505 |     while (bytes[num_of_bytes] >= num)
2024-01-10T13:09:10,100         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-01-10T13:09:10,102   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-01-10T13:09:10,102   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-10T13:09:10,102     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-01-10T13:09:10,103         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-01-10T13:09:10,103   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-10T13:09:10,103     616 |   for (i = 0; i < num_of_bytes; i++)
2024-01-10T13:09:10,103         |               ~~^~~~~~~~~~~~~~
2024-01-10T13:09:10,103   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-10T13:09:10,103     624 |   for (i = 0; i < num_of_bytes-1; i++)
2024-01-10T13:09:10,103         |               ~~^~~~~~~~~~~~~~~~
2024-01-10T13:09:10,104   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-01-10T13:09:10,104   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-10T13:09:10,104     664 |   if (lastbits < num_of_bits)
2024-01-10T13:09:10,104         |       ~~~~~~~~~^~~~~~~~~~~~~
2024-01-10T13:09:10,107   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-01-10T13:09:10,107   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-10T13:09:10,108     785 |  if(size3>xfp->buf1size)
2024-01-10T13:09:10,108         |     ~~~~~^~~~~~~~~~~~~~
2024-01-10T13:09:10,109   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-10T13:09:10,109     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-01-10T13:09:10,110         |                   ^
2024-01-10T13:09:10,112   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-10T13:09:10,112     932 |     if(countmjh >= size3 ) { return -1; }
2024-01-10T13:09:10,112         |        ~~~~~~~~~^~~~~~~~
2024-01-10T13:09:10,112   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-10T13:09:10,112     935 |     if(countmjh >= size3 ) { return -1; }
2024-01-10T13:09:10,113         |        ~~~~~~~~~^~~~~~~~
2024-01-10T13:09:10,113   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-10T13:09:10,113     938 |     if(countmjh >= size3 ) { return -1; }
2024-01-10T13:09:10,113         |        ~~~~~~~~~^~~~~~~~
2024-01-10T13:09:10,113   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-10T13:09:10,113     945 |     if(countmjh >= size3 ) { return -1; }
2024-01-10T13:09:10,113         |        ~~~~~~~~~^~~~~~~~
2024-01-10T13:09:10,114   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-10T13:09:10,114     948 |     if(countmjh >= size3 ) { return -1; }
2024-01-10T13:09:10,114         |        ~~~~~~~~~^~~~~~~~
2024-01-10T13:09:10,114   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-10T13:09:10,114     951 |     if(countmjh >= size3 ) { return -1; }
2024-01-10T13:09:10,114         |        ~~~~~~~~~^~~~~~~~
2024-01-10T13:09:10,114   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-01-10T13:09:10,114     756 |  int smallidx,  minidx, maxidx;
2024-01-10T13:09:10,115         |                 ^~~~~~
2024-01-10T13:09:10,115   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-01-10T13:09:10,115     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-01-10T13:09:10,115         |                         ^~~~~~
2024-01-10T13:09:10,115   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-01-10T13:09:10,115     763 |  int errval=1;
2024-01-10T13:09:10,115         |      ^~~~~~
2024-01-10T13:09:10,116   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-01-10T13:09:10,116   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-10T13:09:10,116    1011 |  if(size3>xfp->buf1size)
2024-01-10T13:09:10,117         |     ~~~~~^~~~~~~~~~~~~~
2024-01-10T13:09:10,118   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-10T13:09:10,118    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2024-01-10T13:09:10,118         |                     ~~~~~~~~^~~~~~~
2024-01-10T13:09:10,119   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-10T13:09:10,119    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2024-01-10T13:09:10,119         |                    ~~~~~~~~^~~~~~~
2024-01-10T13:09:10,120   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-10T13:09:10,120    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2024-01-10T13:09:10,120         |                    ~~~~~~~~^~~~~~~
2024-01-10T13:09:10,121   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-10T13:09:10,121    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-01-10T13:09:10,122         |                  ^
2024-01-10T13:09:10,122   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-10T13:09:10,122    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-01-10T13:09:10,122         |                   ^
2024-01-10T13:09:10,125   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-10T13:09:10,126    1275 |  if(tmp==(unsigned int)buf2[0])
2024-01-10T13:09:10,126         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-01-10T13:09:10,126   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-01-10T13:09:10,126    1001 |  int errval;
2024-01-10T13:09:10,126         |      ^~~~~~
2024-01-10T13:09:10,129   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-01-10T13:09:10,129   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-10T13:09:10,129    1316 |  if(size3>xfp->buf1size)
2024-01-10T13:09:10,129         |     ~~~~~^~~~~~~~~~~~~~
2024-01-10T13:09:10,131   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-10T13:09:10,131    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-01-10T13:09:10,131         |                   ^
2024-01-10T13:09:10,133   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-01-10T13:09:10,134    1289 |  int smallidx,  maxidx, minidx;
2024-01-10T13:09:10,134         |                         ^~~~~~
2024-01-10T13:09:10,134   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-01-10T13:09:10,134    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-01-10T13:09:10,134         |                         ^~~~~~
2024-01-10T13:09:10,134   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-01-10T13:09:10,134    1297 |  int errval=1;
2024-01-10T13:09:10,134         |      ^~~~~~
2024-01-10T13:09:10,136   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-01-10T13:09:10,136   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-10T13:09:10,136    1513 |  if(size3>xfp->buf1size) {
2024-01-10T13:09:10,136         |     ~~~~~^~~~~~~~~~~~~~
2024-01-10T13:09:10,140   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-10T13:09:10,140    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-01-10T13:09:10,140         |                  ^
2024-01-10T13:09:10,140   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-10T13:09:10,141    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-01-10T13:09:10,141         |                   ^
2024-01-10T13:09:10,144   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-10T13:09:10,144    1743 |  if(tmp==(unsigned int)buf2[0])
2024-01-10T13:09:10,144         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-01-10T13:09:10,145   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-01-10T13:09:10,145    1504 |  int errval=1;
2024-01-10T13:09:10,145         |      ^~~~~~
2024-01-10T13:09:12,378   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile_trr.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.o
2024-01-10T13:09:12,473   moleculekit/fileformats/xtc/src/xdrfile_trr.c: In function ‘do_trnheader’:
2024-01-10T13:09:12,473   moleculekit/fileformats/xtc/src/xdrfile_trr.c:111:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-01-10T13:09:12,473     111 |         if (slen != strlen(version)+1)
2024-01-10T13:09:12,474         |                  ^~
2024-01-10T13:09:12,474   moleculekit/fileformats/xtc/src/xdrfile_trr.c:121:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-01-10T13:09:12,474     121 |         if (xdrfile_write_string(version,xd) != (strlen(version)+1) )
2024-01-10T13:09:12,474         |                                              ^~
2024-01-10T13:09:13,042   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/trr.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.o
2024-01-10T13:09:13,359   In file included from /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-01-10T13:09:13,360                    from /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-01-10T13:09:13,360                    from /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-01-10T13:09:13,360                    from moleculekit/fileformats/xtc/trr.c:1226:
2024-01-10T13:09:13,360   /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-01-10T13:09:13,360      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-01-10T13:09:13,360         |  ^~~~~~~
2024-01-10T13:09:13,981   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_22_calc_len_and_offsets’:
2024-01-10T13:09:13,990   moleculekit/fileformats/xtc/trr.c:16334:37: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare]
2024-01-10T13:09:13,990   16334 |       __pyx_t_6 = (__pyx_v_n_frames == __pyx_t_14);
2024-01-10T13:09:13,990         |                                     ^~
2024-01-10T13:09:34,323   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pw_11moleculekit_3trr_17TRRTrajectoryFile_17_write’:
2024-01-10T13:09:34,323   moleculekit/fileformats/xtc/trr.c:1128:40: warning: ‘__pyx_v_status’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-01-10T13:09:34,323    1128 |   #define PyInt_FromLong               PyLong_FromLong
2024-01-10T13:09:34,323         |                                        ^~~~~~~~~~~~~~~
2024-01-10T13:09:34,332   moleculekit/fileformats/xtc/trr.c:14242:7: note: ‘__pyx_v_status’ was declared here
2024-01-10T13:09:34,332   14242 |   int __pyx_v_status;
2024-01-10T13:09:34,332         |       ^~~~~~~~~~~~~~
2024-01-10T13:09:44,669   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_12_read’:
2024-01-10T13:09:44,675   moleculekit/fileformats/xtc/trr.c:11541:19: warning: ‘__pyx_pybuffernd_forces.diminfo[2].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-01-10T13:09:44,676   11541 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_forces.diminfo[2].shape)) __pyx_t_4 = 2;
2024-01-10T13:09:44,676         |                   ^
2024-01-10T13:09:44,682   moleculekit/fileformats/xtc/trr.c:11537:19: warning: ‘__pyx_pybuffernd_forces.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-01-10T13:09:44,683   11537 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_forces.diminfo[1].shape)) __pyx_t_4 = 1;
2024-01-10T13:09:44,683         |                   ^
2024-01-10T13:09:44,684   moleculekit/fileformats/xtc/trr.c:2491:95: warning: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-01-10T13:09:44,684    2491 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-01-10T13:09:44,684         |                                                                                               ^
2024-01-10T13:09:44,689   moleculekit/fileformats/xtc/trr.c:10073:21: note: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ was declared here
2024-01-10T13:09:44,689   10073 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-01-10T13:09:44,690         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-01-10T13:09:44,695   moleculekit/fileformats/xtc/trr.c:11531:59: warning: ‘__pyx_pybuffernd_forces.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-01-10T13:09:44,696   11531 |           __pyx_t_28 += __pyx_pybuffernd_forces.diminfo[0].shape;
2024-01-10T13:09:44,696         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-01-10T13:09:44,702   moleculekit/fileformats/xtc/trr.c:11484:19: warning: ‘__pyx_pybuffernd_vel.diminfo[2].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-01-10T13:09:44,702   11484 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_vel.diminfo[2].shape)) __pyx_t_4 = 2;
2024-01-10T13:09:44,703         |                   ^
2024-01-10T13:09:44,709   moleculekit/fileformats/xtc/trr.c:11480:19: warning: ‘__pyx_pybuffernd_vel.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-01-10T13:09:44,709   11480 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_vel.diminfo[1].shape)) __pyx_t_4 = 1;
2024-01-10T13:09:44,710         |                   ^
2024-01-10T13:09:44,710   moleculekit/fileformats/xtc/trr.c:2491:95: warning: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-01-10T13:09:44,710    2491 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-01-10T13:09:44,711         |                                                                                               ^
2024-01-10T13:09:44,716   moleculekit/fileformats/xtc/trr.c:10089:21: note: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ was declared here
2024-01-10T13:09:44,716   10089 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-01-10T13:09:44,716         |                     ^~~~~~~~~~~~~~~~~~~~
2024-01-10T13:09:44,722   moleculekit/fileformats/xtc/trr.c:11474:56: warning: ‘__pyx_pybuffernd_vel.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-01-10T13:09:44,722   11474 |           __pyx_t_28 += __pyx_pybuffernd_vel.diminfo[0].shape;
2024-01-10T13:09:44,722         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-01-10T13:09:44,728   moleculekit/fileformats/xtc/trr.c:11873:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-01-10T13:09:44,728   11873 |       } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_xyz_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-01-10T13:09:44,728         |                 ^
2024-01-10T13:09:44,735   moleculekit/fileformats/xtc/trr.c:11869:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-01-10T13:09:44,735   11869 |       } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_xyz_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-01-10T13:09:44,736         |                 ^
2024-01-10T13:09:44,742   moleculekit/fileformats/xtc/trr.c:11714:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-01-10T13:09:44,742   11714 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_vel_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-01-10T13:09:44,743         |                   ^
2024-01-10T13:09:44,749   moleculekit/fileformats/xtc/trr.c:11710:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-01-10T13:09:44,749   11710 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_vel_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-01-10T13:09:44,750         |                   ^
2024-01-10T13:09:44,755   moleculekit/fileformats/xtc/trr.c:11766:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-01-10T13:09:44,755   11766 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_forces_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-01-10T13:09:44,755         |                   ^
2024-01-10T13:09:44,762   moleculekit/fileformats/xtc/trr.c:11762:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-01-10T13:09:44,763   11762 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_forces_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-01-10T13:09:44,763         |                   ^
2024-01-10T13:09:51,325   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/trr.cpython-39-arm-linux-gnueabihf.so
2024-01-10T13:09:51,519   building 'moleculekit.dcd' extension
2024-01-10T13:09:51,519   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-01-10T13:09:51,520   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-01-10T13:09:51,521   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/dcd/dcd.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.o
2024-01-10T13:09:51,850   In file included from /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-01-10T13:09:51,850                    from /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-01-10T13:09:51,851                    from /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-01-10T13:09:51,851                    from moleculekit/fileformats/dcd/dcd.c:1221:
2024-01-10T13:09:51,851   /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-01-10T13:09:51,851      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-01-10T13:09:51,851         |  ^~~~~~~
2024-01-10T13:09:52,876   In file included from moleculekit/fileformats/dcd/include/dcdplugin.h:1,
2024-01-10T13:09:52,876                    from moleculekit/fileformats/dcd/dcd.c:1227:
2024-01-10T13:09:52,876   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-01-10T13:09:52,877     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-01-10T13:09:52,877         |            ^~~~~~~~~~~~~
2024-01-10T13:09:52,877   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-01-10T13:09:52,877     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-01-10T13:09:52,877         |            ^~~~~~~~~~~~~~
2024-01-10T13:09:52,877   moleculekit/fileformats/dcd/include/fastio.h:466:12: warning: ‘fio_write_int32’ defined but not used [-Wunused-function]
2024-01-10T13:09:52,877     466 | static int fio_write_int32(fio_fd fd, int i) {
2024-01-10T13:09:52,878         |            ^~~~~~~~~~~~~~~
2024-01-10T13:09:52,878   moleculekit/fileformats/dcd/include/fastio.h:457:19: warning: ‘fio_ftell’ defined but not used [-Wunused-function]
2024-01-10T13:09:52,878     457 | static fio_size_t fio_ftell(fio_fd fd) {
2024-01-10T13:09:52,878         |                   ^~~~~~~~~
2024-01-10T13:09:52,878   moleculekit/fileformats/dcd/include/fastio.h:450:19: warning: ‘fio_fseek’ defined but not used [-Wunused-function]
2024-01-10T13:09:52,878     450 | static fio_size_t fio_fseek(fio_fd fd, fio_size_t offset, int whence) {
2024-01-10T13:09:52,878         |                   ^~~~~~~~~
2024-01-10T13:09:52,879   moleculekit/fileformats/dcd/include/fastio.h:415:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
2024-01-10T13:09:52,879     415 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
2024-01-10T13:09:52,879         |                   ^~~~~~~~~
2024-01-10T13:09:52,879   moleculekit/fileformats/dcd/include/fastio.h:394:12: warning: ‘fio_fclose’ defined but not used [-Wunused-function]
2024-01-10T13:09:52,879     394 | static int fio_fclose(fio_fd fd) {
2024-01-10T13:09:52,879         |            ^~~~~~~~~~
2024-01-10T13:09:52,879   moleculekit/fileformats/dcd/include/fastio.h:366:12: warning: ‘fio_open’ defined but not used [-Wunused-function]
2024-01-10T13:09:52,879     366 | static int fio_open(const char *filename, int mode, fio_fd *fd) {
2024-01-10T13:09:52,880         |            ^~~~~~~~
2024-01-10T13:10:05,500   moleculekit/fileformats/dcd/dcd.c: In function ‘__pyx_pf_11moleculekit_3dcd_17DCDTrajectoryFile_18read’:
2024-01-10T13:10:05,501   moleculekit/fileformats/dcd/dcd.c:1123:40: warning: ‘__pyx_v_i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-01-10T13:10:05,501    1123 |   #define PyInt_FromLong               PyLong_FromLong
2024-01-10T13:10:05,501         |                                        ^~~~~~~~~~~~~~~
2024-01-10T13:10:05,505   moleculekit/fileformats/dcd/dcd.c:8004:7: note: ‘__pyx_v_i’ was declared here
2024-01-10T13:10:05,505    8004 |   int __pyx_v_i;
2024-01-10T13:10:05,505         |       ^~~~~~~~~
2024-01-10T13:10:08,733   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/dcd/src/dcdplugin.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.o
2024-01-10T13:10:08,914   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdheader’:
2024-01-10T13:10:08,915   moleculekit/fileformats/dcd/src/dcdplugin.c:150:55: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-10T13:10:08,915     150 |   else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-01-10T13:10:08,915         |                                                       ^~
2024-01-10T13:10:08,916   moleculekit/fileformats/dcd/src/dcdplugin.c:173:54: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-10T13:10:08,916     173 |       if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-01-10T13:10:08,916         |                                                      ^~
2024-01-10T13:10:08,916   moleculekit/fileformats/dcd/src/dcdplugin.c:194:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-10T13:10:08,916     194 |     if (input_integer[0] != dcdcordmagic)
2024-01-10T13:10:08,916         |                          ^~
2024-01-10T13:10:08,920   moleculekit/fileformats/dcd/src/dcdplugin.c:409:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-10T13:10:08,920     409 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-01-10T13:10:08,920         |                                               ^~
2024-01-10T13:10:08,920   moleculekit/fileformats/dcd/src/dcdplugin.c:428:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-10T13:10:08,920     428 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-01-10T13:10:08,921         |                                               ^~
2024-01-10T13:10:08,924   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdstep’:
2024-01-10T13:10:08,924   moleculekit/fileformats/dcd/src/dcdplugin.c:651:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-10T13:10:08,924     651 |         if (tmpbuf[i] != sizeof(float) * N)
2024-01-10T13:10:08,925         |                       ^~
2024-01-10T13:10:08,925   moleculekit/fileformats/dcd/src/dcdplugin.c:659:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-10T13:10:08,925     659 |         if ((tmpbuf[2 * i] + tmpbuf[2 * i + 1]) != sizeof(float) * N)
2024-01-10T13:10:08,925         |                                                 ^~
2024-01-10T13:10:08,948   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:55:
2024-01-10T13:10:08,948   At top level:
2024-01-10T13:10:08,948   moleculekit/fileformats/dcd/include/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
2024-01-10T13:10:08,948      96 | static void swap2_aligned(void *v, long ndata) {
2024-01-10T13:10:08,948         |             ^~~~~~~~~~~~~
2024-01-10T13:10:08,949   moleculekit/fileformats/dcd/include/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
2024-01-10T13:10:08,949      32 | static void swap2_unaligned(void *v, long ndata) {
2024-01-10T13:10:08,949         |             ^~~~~~~~~~~~~~~
2024-01-10T13:10:08,949   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:46:
2024-01-10T13:10:08,949   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-01-10T13:10:08,949     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-01-10T13:10:08,949         |            ^~~~~~~~~~~~~
2024-01-10T13:10:08,950   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-01-10T13:10:08,950     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-01-10T13:10:08,950         |            ^~~~~~~~~~~~~~
2024-01-10T13:10:10,057   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so
2024-01-10T13:10:10,198   building 'moleculekit.binpos' extension
2024-01-10T13:10:10,199   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-01-10T13:10:10,200   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-01-10T13:10:10,201   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/binpos/binpos.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.o
2024-01-10T13:10:10,525   In file included from /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-01-10T13:10:10,526                    from /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-01-10T13:10:10,526                    from /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-01-10T13:10:10,526                    from moleculekit/fileformats/binpos/binpos.c:1221:
2024-01-10T13:10:10,526   /tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-01-10T13:10:10,526      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-01-10T13:10:10,526         |  ^~~~~~~
2024-01-10T13:10:23,993   moleculekit/fileformats/binpos/binpos.c: In function ‘__pyx_pw_11moleculekit_6binpos_20BINPOSTrajectoryFile_7_read’:
2024-01-10T13:10:23,998   moleculekit/fileformats/binpos/binpos.c:8027:6: warning: ‘__pyx_v_status’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-01-10T13:10:23,998    8027 |   if (__pyx_t_1) {
2024-01-10T13:10:23,998         |      ^
2024-01-10T13:10:24,002   moleculekit/fileformats/binpos/binpos.c:7504:7: note: ‘__pyx_v_status’ was declared here
2024-01-10T13:10:24,002    7504 |   int __pyx_v_status;
2024-01-10T13:10:24,002         |       ^~~~~~~~~~~~~~
2024-01-10T13:10:24,003   moleculekit/fileformats/binpos/binpos.c:1123:40: warning: ‘__pyx_v_i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-01-10T13:10:24,003    1123 |   #define PyInt_FromLong               PyLong_FromLong
2024-01-10T13:10:24,003         |                                        ^~~~~~~~~~~~~~~
2024-01-10T13:10:24,007   moleculekit/fileformats/binpos/binpos.c:7501:7: note: ‘__pyx_v_i’ was declared here
2024-01-10T13:10:24,007    7501 |   int __pyx_v_i;
2024-01-10T13:10:24,007         |       ^~~~~~~~~
2024-01-10T13:10:26,265   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/binpos/src/binposplugin.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.o
2024-01-10T13:10:26,573   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so
2024-01-10T13:10:26,719   building 'moleculekit.tmalign' extension
2024-01-10T13:10:26,720   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign
2024-01-10T13:10:26,720   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-01-10T13:10:26,722   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o -w
2024-01-10T13:11:00,427   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-vl29xpcs/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -w
2024-01-10T13:11:20,051   In file included from /usr/include/c++/10/vector:72,
2024-01-10T13:11:20,051                    from moleculekit/tmalign/tmalign_util.cpp:1245:
2024-01-10T13:11:20,052   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2024-01-10T13:11:20,052   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2024-01-10T13:11:20,052     426 |       vector<_Tp, _Alloc>::
2024-01-10T13:11:20,052         |       ^~~~~~~~~~~~~~~~~~~
2024-01-10T13:11:20,631   In file included from /usr/include/c++/10/vector:67,
2024-01-10T13:11:20,632                    from moleculekit/tmalign/tmalign_util.cpp:1245:
2024-01-10T13:11:20,632   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2024-01-10T13:11:20,632   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-01-10T13:11:20,632    1198 |    _M_realloc_insert(end(), __x);
2024-01-10T13:11:20,632         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-01-10T13:11:20,633   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-01-10T13:11:20,633    1198 |    _M_realloc_insert(end(), __x);
2024-01-10T13:11:20,633         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-01-10T13:11:20,633   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-01-10T13:11:20,634    1198 |    _M_realloc_insert(end(), __x);
2024-01-10T13:11:20,634         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-01-10T13:11:23,105   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so
2024-01-10T13:11:23,556   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2024-01-10T13:11:23,557   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.8.20'
2024-01-10T13:11:23,557   installing to build/bdist.linux-armv7l/wheel
2024-01-10T13:11:23,557   running install
2024-01-10T13:11:23,582   running install_lib
2024-01-10T13:11:23,590   creating build/bdist.linux-armv7l
2024-01-10T13:11:23,591   creating build/bdist.linux-armv7l/wheel
2024-01-10T13:11:23,593   creating build/bdist.linux-armv7l/wheel/moleculekit
2024-01-10T13:11:23,594   copying build/lib.linux-armv7l-cpython-39/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-10T13:11:23,597   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-01-10T13:11:23,598   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-01-10T13:11:23,601   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-01-10T13:11:23,604   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-01-10T13:11:23,607   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-01-10T13:11:23,609   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-01-10T13:11:23,612   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-01-10T13:11:23,614   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-01-10T13:11:23,617   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-01-10T13:11:23,620   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-01-10T13:11:23,622   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-01-10T13:11:23,623   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-01-10T13:11:23,625   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-01-10T13:11:23,627   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-01-10T13:11:23,630   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-01-10T13:11:23,632   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-01-10T13:11:23,635   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-01-10T13:11:23,638   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/modelling.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-01-10T13:11:23,641   copying build/lib.linux-armv7l-cpython-39/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-10T13:11:23,643   copying build/lib.linux-armv7l-cpython-39/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-10T13:11:23,647   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-01-10T13:11:23,648   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-01-10T13:11:23,681   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-01-10T13:11:23,681   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-01-10T13:11:23,702   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-01-10T13:11:23,705   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-01-10T13:11:23,706   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-01-10T13:11:23,726   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-01-10T13:11:23,729   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-01-10T13:11:23,730   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-01-10T13:11:23,733   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-01-10T13:11:23,754   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-01-10T13:11:23,756   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-01-10T13:11:23,784   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-01-10T13:11:23,807   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-01-10T13:11:23,810   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-01-10T13:11:23,811   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-01-10T13:11:23,831   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-01-10T13:11:23,834   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-01-10T13:11:23,858   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-01-10T13:11:23,859   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-01-10T13:11:23,861   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-01-10T13:11:23,879   copying build/lib.linux-armv7l-cpython-39/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-10T13:11:23,881   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-01-10T13:11:23,882   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-01-10T13:11:23,885   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-01-10T13:11:23,887   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-01-10T13:11:23,889   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-01-10T13:11:23,891   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-10T13:11:23,893   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-01-10T13:11:23,894   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-01-10T13:11:23,899   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-01-10T13:11:23,901   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-01-10T13:11:23,904   copying build/lib.linux-armv7l-cpython-39/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-10T13:11:23,907   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-01-10T13:11:23,908   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-01-10T13:11:23,933   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-01-10T13:11:23,936   copying build/lib.linux-armv7l-cpython-39/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-10T13:11:23,940   copying build/lib.linux-armv7l-cpython-39/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-10T13:11:23,944   copying build/lib.linux-armv7l-cpython-39/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-10T13:11:23,947   copying build/lib.linux-armv7l-cpython-39/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-10T13:11:23,949   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-10T13:11:23,951   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-01-10T13:11:23,953   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-01-10T13:11:23,954   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-01-10T13:11:23,968   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-01-10T13:11:23,971   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binposlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-01-10T13:11:23,973   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-01-10T13:11:23,974   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-01-10T13:11:23,977   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-01-10T13:11:23,978   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-01-10T13:11:23,981   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/binposplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-01-10T13:11:23,983   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-01-10T13:11:23,984   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/utils.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-01-10T13:11:23,987   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-01-10T13:11:23,988   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-01-10T13:11:23,991   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcdlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-01-10T13:11:23,993   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-01-10T13:11:23,994   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-01-10T13:11:23,997   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-01-10T13:11:24,013   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-01-10T13:11:24,014   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-01-10T13:11:24,018   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-01-10T13:11:24,021   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/fastio.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-01-10T13:11:24,024   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/endianswap.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-01-10T13:11:24,028   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/dcdplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-01-10T13:11:24,031   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-01-10T13:11:24,033   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-01-10T13:11:24,036   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xdrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-01-10T13:11:24,039   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-01-10T13:11:24,042   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-01-10T13:11:24,045   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-01-10T13:11:24,047   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-01-10T13:11:24,051   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-01-10T13:11:24,054   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-01-10T13:11:24,058   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-01-10T13:11:24,063   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-01-10T13:11:24,066   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-01-10T13:11:24,071   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-01-10T13:11:24,110   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-01-10T13:11:24,136   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-01-10T13:11:24,137   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-01-10T13:11:24,139   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-01-10T13:11:24,141   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-01-10T13:11:24,144   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/trr_header.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-01-10T13:11:24,146   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdr_seek.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-01-10T13:11:24,148   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-01-10T13:11:24,150   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-01-10T13:11:24,152   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/netcdf.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-01-10T13:11:24,155   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-01-10T13:11:24,157   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-01-10T13:11:24,158   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-01-10T13:11:24,160   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-01-10T13:11:24,162   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-01-10T13:11:24,164   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-01-10T13:11:24,166   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-01-10T13:11:24,168   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-01-10T13:11:24,169   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-01-10T13:11:24,171   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-01-10T13:11:24,174   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-01-10T13:11:24,175   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-01-10T13:11:24,178   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-01-10T13:11:24,179   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-01-10T13:11:24,181   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-01-10T13:11:24,183   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-10T13:11:24,185   copying build/lib.linux-armv7l-cpython-39/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-10T13:11:24,187   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-01-10T13:11:24,188   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-01-10T13:11:24,191   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-01-10T13:11:24,216   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-10T13:11:24,241   copying build/lib.linux-armv7l-cpython-39/moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-10T13:11:24,255   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-01-10T13:11:24,257   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-01-10T13:11:24,258   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-01-10T13:11:24,260   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-01-10T13:11:24,262   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-01-10T13:11:24,264   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-01-10T13:11:24,266   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-01-10T13:11:24,268   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-01-10T13:11:24,271   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-01-10T13:11:24,273   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-01-10T13:11:24,276   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-01-10T13:11:24,277   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-01-10T13:11:24,280   copying build/lib.linux-armv7l-cpython-39/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-10T13:11:24,281   copying build/lib.linux-armv7l-cpython-39/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-10T13:11:24,283   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-10T13:11:24,343   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-10T13:11:24,364   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-10T13:11:24,393   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-10T13:11:24,395   copying build/lib.linux-armv7l-cpython-39/moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-10T13:11:24,411   copying build/lib.linux-armv7l-cpython-39/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-10T13:11:24,413   copying build/lib.linux-armv7l-cpython-39/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-10T13:11:24,416   copying build/lib.linux-armv7l-cpython-39/moleculekit/trr.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-10T13:11:24,443   copying build/lib.linux-armv7l-cpython-39/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-10T13:11:24,445   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-01-10T13:11:24,446   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-01-10T13:11:24,449   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-01-10T13:11:24,477   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2024-01-10T13:11:24,478   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-01-10T13:11:24,480   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-01-10T13:11:24,483   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2024-01-10T13:11:24,486   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,488   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,490   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,492   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,494   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,496   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,498   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,501   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,503   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,505   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,507   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,509   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,511   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,513   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,515   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,517   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,519   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,522   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,524   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,527   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,528   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,531   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,533   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,535   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,537   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,539   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,541   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,543   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,545   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,547   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,549   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,551   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,553   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,555   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,557   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,559   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,561   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,563   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,565   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,567   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,570   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,572   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,574   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,576   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,578   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,580   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,582   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,584   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,587   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,589   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,591   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,593   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,595   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,597   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,599   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,602   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,604   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,606   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,608   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,610   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,612   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,614   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,616   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,618   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,621   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,623   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,625   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,627   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,629   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,631   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,634   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,636   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,638   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,640   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,642   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,644   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,646   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,648   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,650   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,652   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,655   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,657   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,659   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,661   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,663   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,665   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,667   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,669   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,671   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,673   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,675   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,678   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,679   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,681   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,684   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,686   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,688   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,691   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,693   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,695   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,698   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,700   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,703   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,705   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,707   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,709   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,711   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,713   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,715   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,717   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,719   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,722   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,724   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,727   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,729   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,731   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,733   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,735   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,737   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,739   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,741   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,743   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,745   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,747   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,749   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,752   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,754   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,756   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,758   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,760   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,762   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,764   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,766   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,769   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,771   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,773   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,775   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,777   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,779   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,782   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,784   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,786   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,788   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,790   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,792   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,794   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,796   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,799   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,801   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,803   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,805   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,807   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,810   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,812   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,814   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,817   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,820   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,823   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,825   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,828   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,831   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,834   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,837   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,839   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,842   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,845   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,847   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,850   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,853   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,856   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,859   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,861   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,864   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,867   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,869   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,872   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-01-10T13:11:24,875   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-01-10T13:11:24,878   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-01-10T13:11:24,881   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-01-10T13:11:25,113   copying build/lib.linux-armv7l-cpython-39/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-10T13:11:25,115   copying build/lib.linux-armv7l-cpython-39/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-10T13:11:25,118   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-01-10T13:11:25,119   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-01-10T13:11:25,122   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-01-10T13:11:25,124   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-01-10T13:11:25,127   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-01-10T13:11:25,129   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-01-10T13:11:25,131   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-01-10T13:11:25,134   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-01-10T13:11:25,136   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-01-10T13:11:25,138   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-01-10T13:11:25,140   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-01-10T13:11:25,142   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-01-10T13:11:25,143   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-01-10T13:11:25,146   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-01-10T13:11:25,147   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-01-10T13:11:25,150   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-01-10T13:11:25,153   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-10T13:11:25,181   copying build/lib.linux-armv7l-cpython-39/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-10T13:11:25,183   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-10T13:11:25,210   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-10T13:11:25,212   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-01-10T13:11:25,213   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-01-10T13:11:25,234   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-01-10T13:11:25,237   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-01-10T13:11:25,238   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-01-10T13:11:25,244   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-01-10T13:11:25,245   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-01-10T13:11:25,247   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-01-10T13:11:25,249   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-01-10T13:11:25,250   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-01-10T13:11:25,278   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-01-10T13:11:25,280   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-01-10T13:11:25,307   running install_egg_info
2024-01-10T13:11:25,313   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.8.20-py3.9.egg-info
2024-01-10T13:11:25,326   running install_scripts
2024-01-10T13:11:25,374   creating build/bdist.linux-armv7l/wheel/moleculekit-1.8.20.dist-info/WHEEL
2024-01-10T13:11:25,377   creating '/tmp/pip-wheel-1q2dex9a/.tmp-7fjj883s/moleculekit-1.8.20-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-01-10T13:11:25,380   adding 'moleculekit/__init__.py'
2024-01-10T13:11:25,382   adding 'moleculekit/_version.py'
2024-01-10T13:11:25,383   adding 'moleculekit/align.py'
2024-01-10T13:11:25,696   adding 'moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so'
2024-01-10T13:11:25,859   adding 'moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so'
2024-01-10T13:11:25,865   adding 'moleculekit/bondguesser.py'
2024-01-10T13:11:26,110   adding 'moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so'
2024-01-10T13:11:26,118   adding 'moleculekit/config.py'
2024-01-10T13:11:26,286   adding 'moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so'
2024-01-10T13:11:26,292   adding 'moleculekit/dihedral.py'
2024-01-10T13:11:26,294   adding 'moleculekit/distance.py'
2024-01-10T13:11:26,614   adding 'moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so'
2024-01-10T13:11:26,626   adding 'moleculekit/home.py'
2024-01-10T13:11:26,627   adding 'moleculekit/logging.ini'
2024-01-10T13:11:26,642   adding 'moleculekit/molecule.py'
2024-01-10T13:11:26,869   adding 'moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so'
2024-01-10T13:11:26,877   adding 'moleculekit/opm.py'
2024-01-10T13:11:26,880   adding 'moleculekit/periodictable.py'
2024-01-10T13:11:26,881   adding 'moleculekit/pymolgraphics.py'
2024-01-10T13:11:26,882   adding 'moleculekit/rcsb.py'
2024-01-10T13:11:26,884   adding 'moleculekit/rdkitintegration.py'
2024-01-10T13:11:26,897   adding 'moleculekit/readers.py'
2024-01-10T13:11:27,506   adding 'moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so'
2024-01-10T13:11:27,840   adding 'moleculekit/trr.cpython-39-arm-linux-gnueabihf.so'
2024-01-10T13:11:28,225   adding 'moleculekit/util.py'
2024-01-10T13:11:28,227   adding 'moleculekit/version.py'
2024-01-10T13:11:28,229   adding 'moleculekit/viewer.py'
2024-01-10T13:11:28,230   adding 'moleculekit/vmd_wrapper'
2024-01-10T13:11:28,232   adding 'moleculekit/vmdgraphics.py'
2024-01-10T13:11:28,234   adding 'moleculekit/vmdviewer.py'
2024-01-10T13:11:28,500   adding 'moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so'
2024-01-10T13:11:28,521   adding 'moleculekit/writers.py'
2024-01-10T13:11:28,807   adding 'moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so'
2024-01-10T13:11:28,818   adding 'moleculekit/atomselect/__init__.py'
2024-01-10T13:11:28,819   adding 'moleculekit/atomselect/analyze.py'
2024-01-10T13:11:28,821   adding 'moleculekit/atomselect/atomselect.py'
2024-01-10T13:11:28,823   adding 'moleculekit/atomselect/languageparser.py'
2024-01-10T13:11:28,927   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2024-01-10T13:11:28,938   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2024-01-10T13:11:29,031   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2024-01-10T13:11:29,040   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2024-01-10T13:11:29,141   adding 'moleculekit/distance_utils/distance_utils.cpp'
2024-01-10T13:11:29,152   adding 'moleculekit/distance_utils/distance_utils.pyx'
2024-01-10T13:11:29,153   adding 'moleculekit/fileformats/__init__.py'
2024-01-10T13:11:29,158   adding 'moleculekit/fileformats/netcdf.py'
2024-01-10T13:11:29,160   adding 'moleculekit/fileformats/utils.py'
2024-01-10T13:11:29,222   adding 'moleculekit/fileformats/binpos/binpos.c'
2024-01-10T13:11:29,229   adding 'moleculekit/fileformats/binpos/binpos.pyx'
2024-01-10T13:11:29,230   adding 'moleculekit/fileformats/binpos/binposlib.pxd'
2024-01-10T13:11:29,232   adding 'moleculekit/fileformats/binpos/include/binposplugin.h'
2024-01-10T13:11:29,233   adding 'moleculekit/fileformats/binpos/include/largefiles.h'
2024-01-10T13:11:29,238   adding 'moleculekit/fileformats/binpos/include/molfile_plugin.h'
2024-01-10T13:11:29,241   adding 'moleculekit/fileformats/binpos/src/binposplugin.c'
2024-01-10T13:11:29,304   adding 'moleculekit/fileformats/dcd/dcd.c'
2024-01-10T13:11:29,312   adding 'moleculekit/fileformats/dcd/dcd.pyx'
2024-01-10T13:11:29,313   adding 'moleculekit/fileformats/dcd/dcdlib.pxd'
2024-01-10T13:11:29,315   adding 'moleculekit/fileformats/dcd/include/dcdplugin.h'
2024-01-10T13:11:29,317   adding 'moleculekit/fileformats/dcd/include/endianswap.h'
2024-01-10T13:11:29,319   adding 'moleculekit/fileformats/dcd/include/fastio.h'
2024-01-10T13:11:29,320   adding 'moleculekit/fileformats/dcd/include/largefiles.h'
2024-01-10T13:11:29,325   adding 'moleculekit/fileformats/dcd/include/molfile_plugin.h'
2024-01-10T13:11:29,331   adding 'moleculekit/fileformats/dcd/src/dcdplugin.c'
2024-01-10T13:11:29,426   adding 'moleculekit/fileformats/xtc/trr.c'
2024-01-10T13:11:29,437   adding 'moleculekit/fileformats/xtc/trr.pyx'
2024-01-10T13:11:29,439   adding 'moleculekit/fileformats/xtc/trrlib.pxd'
2024-01-10T13:11:29,440   adding 'moleculekit/fileformats/xtc/xdrlib.pxd'
2024-01-10T13:11:29,530   adding 'moleculekit/fileformats/xtc/xtc.cpp'
2024-01-10T13:11:29,538   adding 'moleculekit/fileformats/xtc/xtc.pyx'
2024-01-10T13:11:29,540   adding 'moleculekit/fileformats/xtc/xtclib.pxd'
2024-01-10T13:11:29,541   adding 'moleculekit/fileformats/xtc/include/trr_header.h'
2024-01-10T13:11:29,542   adding 'moleculekit/fileformats/xtc/include/xdr_seek.h'
2024-01-10T13:11:29,545   adding 'moleculekit/fileformats/xtc/include/xdrfile.h'
2024-01-10T13:11:29,546   adding 'moleculekit/fileformats/xtc/include/xdrfile_trr.h'
2024-01-10T13:11:29,548   adding 'moleculekit/fileformats/xtc/include/xdrfile_xtc.h'
2024-01-10T13:11:29,549   adding 'moleculekit/fileformats/xtc/include/xtc.h'
2024-01-10T13:11:29,551   adding 'moleculekit/fileformats/xtc/src/xdr_seek.c'
2024-01-10T13:11:29,557   adding 'moleculekit/fileformats/xtc/src/xdrfile.cpp'
2024-01-10T13:11:29,560   adding 'moleculekit/fileformats/xtc/src/xdrfile_trr.c'
2024-01-10T13:11:29,561   adding 'moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp'
2024-01-10T13:11:29,563   adding 'moleculekit/fileformats/xtc/src/xtc.cpp'
2024-01-10T13:11:29,565   adding 'moleculekit/interactions/__init__.py'
2024-01-10T13:11:29,853   adding 'moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so'
2024-01-10T13:11:30,125   adding 'moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so'
2024-01-10T13:11:30,136   adding 'moleculekit/interactions/interactions.py'
2024-01-10T13:11:30,419   adding 'moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so'
2024-01-10T13:11:30,708   adding 'moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so'
2024-01-10T13:11:30,810   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2024-01-10T13:11:30,819   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2024-01-10T13:11:30,911   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2024-01-10T13:11:30,920   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2024-01-10T13:11:31,015   adding 'moleculekit/interactions/pipi/pipi.cpp'
2024-01-10T13:11:31,024   adding 'moleculekit/interactions/pipi/pipi.pyx'
2024-01-10T13:11:31,118   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2024-01-10T13:11:31,127   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2024-01-10T13:11:31,215   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2024-01-10T13:11:31,223   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2024-01-10T13:11:31,224   adding 'moleculekit/pdbx/__init__.py'
2024-01-10T13:11:31,228   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2024-01-10T13:11:31,231   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2024-01-10T13:11:31,233   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2024-01-10T13:11:31,234   adding 'moleculekit/pdbx/reader/__init__.py'
2024-01-10T13:11:31,236   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2024-01-10T13:11:31,238   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2024-01-10T13:11:31,239   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2024-01-10T13:11:31,241   adding 'moleculekit/pdbx/tests/__init__.py'
2024-01-10T13:11:31,243   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2024-01-10T13:11:31,244   adding 'moleculekit/pdbx/writer/__init__.py'
2024-01-10T13:11:31,245   adding 'moleculekit/ply/__init__.py'
2024-01-10T13:11:31,250   adding 'moleculekit/ply/lex.py'
2024-01-10T13:11:31,261   adding 'moleculekit/ply/yacc.py'
2024-01-10T13:11:31,264   adding 'moleculekit/projections/__init__.py'
2024-01-10T13:11:31,266   adding 'moleculekit/projections/metriccoordinate.py'
2024-01-10T13:11:31,269   adding 'moleculekit/projections/metricdihedral.py'
2024-01-10T13:11:31,273   adding 'moleculekit/projections/metricdistance.py'
2024-01-10T13:11:31,275   adding 'moleculekit/projections/metricfluctuation.py'
2024-01-10T13:11:31,277   adding 'moleculekit/projections/metricgyration.py'
2024-01-10T13:11:31,280   adding 'moleculekit/projections/metricplumed2.py'
2024-01-10T13:11:31,282   adding 'moleculekit/projections/metricrmsd.py'
2024-01-10T13:11:31,284   adding 'moleculekit/projections/metricsasa.py'
2024-01-10T13:11:31,286   adding 'moleculekit/projections/metricsecondarystructure.py'
2024-01-10T13:11:31,288   adding 'moleculekit/projections/metricshell.py'
2024-01-10T13:11:31,290   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2024-01-10T13:11:31,291   adding 'moleculekit/projections/metrictmscore.py'
2024-01-10T13:11:31,292   adding 'moleculekit/projections/projection.py'
2024-01-10T13:11:31,294   adding 'moleculekit/projections/util.py'
2024-01-10T13:11:31,296   adding 'moleculekit/share/ALA.cif'
2024-01-10T13:11:31,297   adding 'moleculekit/share/backbone.cif'
2024-01-10T13:11:32,606   adding 'moleculekit/share/opm_sequences.json'
2024-01-10T13:11:32,692   adding 'moleculekit/share/atomselect/atomselect.json'
2024-01-10T13:11:32,697   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2024-01-10T13:11:32,698   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2024-01-10T13:11:32,699   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2024-01-10T13:11:32,700   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2024-01-10T13:11:32,701   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2024-01-10T13:11:32,703   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2024-01-10T13:11:32,704   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2024-01-10T13:11:32,705   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2024-01-10T13:11:32,706   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2024-01-10T13:11:32,707   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2024-01-10T13:11:32,709   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2024-01-10T13:11:32,710   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2024-01-10T13:11:32,711   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2024-01-10T13:11:32,712   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2024-01-10T13:11:32,713   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2024-01-10T13:11:32,715   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2024-01-10T13:11:32,716   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2024-01-10T13:11:32,717   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2024-01-10T13:11:32,718   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2024-01-10T13:11:32,720   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2024-01-10T13:11:32,721   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2024-01-10T13:11:32,722   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2024-01-10T13:11:32,723   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2024-01-10T13:11:32,724   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2024-01-10T13:11:32,726   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2024-01-10T13:11:32,727   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2024-01-10T13:11:32,728   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2024-01-10T13:11:32,729   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2024-01-10T13:11:32,731   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2024-01-10T13:11:32,732   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2024-01-10T13:11:32,733   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2024-01-10T13:11:32,734   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2024-01-10T13:11:32,735   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2024-01-10T13:11:32,736   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2024-01-10T13:11:32,738   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2024-01-10T13:11:32,739   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2024-01-10T13:11:32,740   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2024-01-10T13:11:32,742   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2024-01-10T13:11:32,743   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2024-01-10T13:11:32,744   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2024-01-10T13:11:32,745   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2024-01-10T13:11:32,747   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2024-01-10T13:11:32,748   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2024-01-10T13:11:32,749   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2024-01-10T13:11:32,750   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2024-01-10T13:11:32,751   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2024-01-10T13:11:32,753   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2024-01-10T13:11:32,754   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2024-01-10T13:11:32,755   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2024-01-10T13:11:32,756   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2024-01-10T13:11:32,758   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2024-01-10T13:11:32,759   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2024-01-10T13:11:32,760   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2024-01-10T13:11:32,761   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2024-01-10T13:11:32,762   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2024-01-10T13:11:32,764   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2024-01-10T13:11:32,765   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2024-01-10T13:11:32,766   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2024-01-10T13:11:32,767   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2024-01-10T13:11:32,769   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2024-01-10T13:11:32,770   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2024-01-10T13:11:32,772   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2024-01-10T13:11:32,773   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2024-01-10T13:11:32,774   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2024-01-10T13:11:32,775   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2024-01-10T13:11:32,776   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2024-01-10T13:11:32,778   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2024-01-10T13:11:32,779   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2024-01-10T13:11:32,780   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2024-01-10T13:11:32,781   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2024-01-10T13:11:32,782   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2024-01-10T13:11:32,784   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2024-01-10T13:11:32,785   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2024-01-10T13:11:32,786   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2024-01-10T13:11:32,787   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2024-01-10T13:11:32,788   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2024-01-10T13:11:32,790   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2024-01-10T13:11:32,791   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2024-01-10T13:11:32,792   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2024-01-10T13:11:32,793   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2024-01-10T13:11:32,794   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2024-01-10T13:11:32,796   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2024-01-10T13:11:32,797   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2024-01-10T13:11:32,798   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2024-01-10T13:11:32,799   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2024-01-10T13:11:32,801   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2024-01-10T13:11:32,802   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2024-01-10T13:11:32,803   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2024-01-10T13:11:32,804   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2024-01-10T13:11:32,806   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2024-01-10T13:11:32,807   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2024-01-10T13:11:32,808   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2024-01-10T13:11:32,809   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2024-01-10T13:11:32,811   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2024-01-10T13:11:32,812   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2024-01-10T13:11:32,813   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2024-01-10T13:11:32,814   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2024-01-10T13:11:32,815   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2024-01-10T13:11:32,817   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2024-01-10T13:11:32,818   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2024-01-10T13:11:32,819   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2024-01-10T13:11:32,820   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2024-01-10T13:11:32,821   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2024-01-10T13:11:32,822   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2024-01-10T13:11:32,824   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2024-01-10T13:11:32,825   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2024-01-10T13:11:32,826   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2024-01-10T13:11:32,827   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2024-01-10T13:11:32,829   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2024-01-10T13:11:32,830   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2024-01-10T13:11:32,831   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2024-01-10T13:11:32,832   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2024-01-10T13:11:32,833   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2024-01-10T13:11:32,835   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2024-01-10T13:11:32,836   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2024-01-10T13:11:32,837   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2024-01-10T13:11:32,838   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2024-01-10T13:11:32,840   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2024-01-10T13:11:32,841   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2024-01-10T13:11:32,842   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2024-01-10T13:11:32,843   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2024-01-10T13:11:32,844   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2024-01-10T13:11:32,846   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2024-01-10T13:11:32,847   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2024-01-10T13:11:32,848   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2024-01-10T13:11:32,849   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2024-01-10T13:11:32,850   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2024-01-10T13:11:32,852   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2024-01-10T13:11:32,853   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2024-01-10T13:11:32,854   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2024-01-10T13:11:32,855   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2024-01-10T13:11:32,856   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2024-01-10T13:11:32,858   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2024-01-10T13:11:32,859   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2024-01-10T13:11:32,860   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2024-01-10T13:11:32,861   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2024-01-10T13:11:32,863   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2024-01-10T13:11:32,864   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2024-01-10T13:11:32,865   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2024-01-10T13:11:32,866   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2024-01-10T13:11:32,867   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2024-01-10T13:11:32,868   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2024-01-10T13:11:32,870   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2024-01-10T13:11:32,871   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2024-01-10T13:11:32,872   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2024-01-10T13:11:32,873   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2024-01-10T13:11:32,875   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2024-01-10T13:11:32,876   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2024-01-10T13:11:32,877   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2024-01-10T13:11:32,878   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2024-01-10T13:11:32,879   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2024-01-10T13:11:32,880   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2024-01-10T13:11:32,882   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2024-01-10T13:11:32,883   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2024-01-10T13:11:32,885   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2024-01-10T13:11:32,886   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2024-01-10T13:11:32,887   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2024-01-10T13:11:32,888   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2024-01-10T13:11:32,889   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2024-01-10T13:11:32,891   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2024-01-10T13:11:32,892   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2024-01-10T13:11:32,893   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2024-01-10T13:11:32,894   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2024-01-10T13:11:32,896   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2024-01-10T13:11:32,897   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2024-01-10T13:11:32,898   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2024-01-10T13:11:32,899   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2024-01-10T13:11:32,901   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2024-01-10T13:11:32,902   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2024-01-10T13:11:32,903   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2024-01-10T13:11:32,904   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2024-01-10T13:11:32,906   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2024-01-10T13:11:32,907   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2024-01-10T13:11:32,908   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2024-01-10T13:11:32,909   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2024-01-10T13:11:32,911   adding 'moleculekit/smallmol/__init__.py'
2024-01-10T13:11:32,916   adding 'moleculekit/smallmol/smallmol.py'
2024-01-10T13:11:32,919   adding 'moleculekit/smallmol/smallmollib.py'
2024-01-10T13:11:32,921   adding 'moleculekit/smallmol/test_smallmol.py'
2024-01-10T13:11:32,922   adding 'moleculekit/smallmol/test_smallmollib.py'
2024-01-10T13:11:32,924   adding 'moleculekit/smallmol/util.py'
2024-01-10T13:11:32,926   adding 'moleculekit/smallmol/tools/__init__.py'
2024-01-10T13:11:32,928   adding 'moleculekit/smallmol/tools/clustering.py'
2024-01-10T13:11:32,929   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2024-01-10T13:11:32,931   adding 'moleculekit/smallmol/tools/test_tools.py'
2024-01-10T13:11:33,022   adding 'moleculekit/tmalign/tmalign_util.cpp'
2024-01-10T13:11:33,030   adding 'moleculekit/tmalign/tmalign_util.pyx'
2024-01-10T13:11:33,032   adding 'moleculekit/tmalign/tmalignlib.pxd'
2024-01-10T13:11:33,033   adding 'moleculekit/tmalign/include/TMAlign.h'
2024-01-10T13:11:33,051   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2024-01-10T13:11:33,054   adding 'moleculekit/tools/__init__.py'
2024-01-10T13:11:33,056   adding 'moleculekit/tools/atomtyper.py'
2024-01-10T13:11:33,059   adding 'moleculekit/tools/autosegment.py'
2024-01-10T13:11:33,061   adding 'moleculekit/tools/crystalpacking.py'
2024-01-10T13:11:33,065   adding 'moleculekit/tools/detect.py'
2024-01-10T13:11:33,067   adding 'moleculekit/tools/docking.py'
2024-01-10T13:11:33,069   adding 'moleculekit/tools/graphalignment.py'
2024-01-10T13:11:33,070   adding 'moleculekit/tools/hhblitsprofile.py'
2024-01-10T13:11:33,072   adding 'moleculekit/tools/modelling.py'
2024-01-10T13:11:33,073   adding 'moleculekit/tools/moleculechecks.py'
2024-01-10T13:11:33,079   adding 'moleculekit/tools/preparation.py'
2024-01-10T13:11:33,082   adding 'moleculekit/tools/preparation_customres.py'
2024-01-10T13:11:33,084   adding 'moleculekit/tools/sequencestructuralalignment.py'
2024-01-10T13:11:33,087   adding 'moleculekit/tools/voxeldescriptors.py'
2024-01-10T13:11:33,089   adding 'moleculekit/tools/obabel_tools/__init__.py'
2024-01-10T13:11:33,090   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2024-01-10T13:11:33,183   adding 'moleculekit/wrapping/wrapping.cpp'
2024-01-10T13:11:33,192   adding 'moleculekit/wrapping/wrapping.pyx'
2024-01-10T13:11:33,194   adding 'moleculekit-1.8.20.dist-info/LICENSE'
2024-01-10T13:11:33,195   adding 'moleculekit-1.8.20.dist-info/METADATA'
2024-01-10T13:11:33,196   adding 'moleculekit-1.8.20.dist-info/WHEEL'
2024-01-10T13:11:33,198   adding 'moleculekit-1.8.20.dist-info/top_level.txt'
2024-01-10T13:11:33,203   adding 'moleculekit-1.8.20.dist-info/RECORD'
2024-01-10T13:11:33,361   removing build/bdist.linux-armv7l/wheel
2024-01-10T13:11:33,657   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2024-01-10T13:11:34,215   Created wheel for moleculekit: filename=moleculekit-1.8.20-cp39-cp39-linux_armv7l.whl size=14239115 sha256=3cdd3e0a26b0236f09190dda12704a15cb0c469df96bb7ee67c65fd5f23156a7
2024-01-10T13:11:34,217   Stored in directory: /tmp/pip-ephem-wheel-cache-w2c9_f_o/wheels/e1/c4/27/197b11acd967d3057c6f664b5a6edc3679dc17cc2b4537c004
2024-01-10T13:11:34,246 Successfully built moleculekit
2024-01-10T13:11:34,609 Removed build tracker: '/tmp/pip-build-tracker-i9jt0als'