2024-01-10T15:15:16,855 Created temporary directory: /tmp/pip-build-tracker-la5lf_pe
2024-01-10T15:15:16,857 Initialized build tracking at /tmp/pip-build-tracker-la5lf_pe
2024-01-10T15:15:16,857 Created build tracker: /tmp/pip-build-tracker-la5lf_pe
2024-01-10T15:15:16,858 Entered build tracker: /tmp/pip-build-tracker-la5lf_pe
2024-01-10T15:15:16,859 Created temporary directory: /tmp/pip-wheel-oddf6y4s
2024-01-10T15:15:16,862 Created temporary directory: /tmp/pip-ephem-wheel-cache-m5johqwu
2024-01-10T15:15:16,884 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-01-10T15:15:16,887 2 location(s) to search for versions of kage-genotyper:
2024-01-10T15:15:16,887 * https://pypi.org/simple/kage-genotyper/
2024-01-10T15:15:16,887 * https://www.piwheels.org/simple/kage-genotyper/
2024-01-10T15:15:16,888 Fetching project page and analyzing links: https://pypi.org/simple/kage-genotyper/
2024-01-10T15:15:16,889 Getting page https://pypi.org/simple/kage-genotyper/
2024-01-10T15:15:16,891 Found index url https://pypi.org/simple/
2024-01-10T15:15:17,105 Fetched page https://pypi.org/simple/kage-genotyper/ as application/vnd.pypi.simple.v1+json
2024-01-10T15:15:17,114   Found link https://files.pythonhosted.org/packages/e7/66/016860668992a70bab9c872c5032fbc34e2f9ecc6936b95b4e9a0b0c812b/kage-genotyper-0.0.2.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.2
2024-01-10T15:15:17,115   Found link https://files.pythonhosted.org/packages/80/ee/e08c95ccb0c401cfb2049e7271acdcb455196900f035e0700f6229d6c25d/kage-genotyper-0.0.3.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.3
2024-01-10T15:15:17,116   Found link https://files.pythonhosted.org/packages/47/5d/a155072db4e4e73f1a7b0f115f4641172458ef39411234990de2601e453a/kage-genotyper-0.0.4.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.4
2024-01-10T15:15:17,117   Found link https://files.pythonhosted.org/packages/9d/e0/92cb3c9de8704e94d12b1d13eee089389ba0b8cdeb5f7606e82357615039/kage-genotyper-0.0.5.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.5
2024-01-10T15:15:17,117   Found link https://files.pythonhosted.org/packages/98/56/5a01b760b477d84f2e0d4284563b1a49d4c7af720ce16d8fe35273e43659/kage-genotyper-0.0.6.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.6
2024-01-10T15:15:17,118   Found link https://files.pythonhosted.org/packages/62/2f/3fff47b02ebb52b577de8ff09e20d158d6796d577ab450cdee96f698915c/kage-genotyper-0.0.7.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.7
2024-01-10T15:15:17,119   Found link https://files.pythonhosted.org/packages/52/b9/4e0cdf90c6fdee475a81d9eb47e8313937d68047a26314a6f4106b1f2f1d/kage-genotyper-0.0.8.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.8
2024-01-10T15:15:17,120   Found link https://files.pythonhosted.org/packages/37/a0/b87d59cc79cc5ecdd5517141b7c9e29953bfea3e9272b99840e1cd9b3d97/kage-genotyper-0.0.9.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.9
2024-01-10T15:15:17,120   Found link https://files.pythonhosted.org/packages/a3/cc/ba453ad8b8cb30ad50f71f35eb171b5fd2419999465ec9ae2572fc1816bb/kage-genotyper-0.0.10.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.10
2024-01-10T15:15:17,121   Found link https://files.pythonhosted.org/packages/6a/54/8aba286e135663aade36ea3d9a597062aee31798db5622527b438994c2c2/kage-genotyper-0.0.12.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.12
2024-01-10T15:15:17,122   Found link https://files.pythonhosted.org/packages/17/30/f3311d5d12dd04c079c18f0003d3d2d71b5948ee3cd18a74c29890b64a1a/kage-genotyper-0.0.13.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.13
2024-01-10T15:15:17,122   Found link https://files.pythonhosted.org/packages/96/34/4fcd7e0720c9c302ff886c6a92fed693424313842c59864d7c85316dd688/kage-genotyper-0.0.14.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.14
2024-01-10T15:15:17,123   Found link https://files.pythonhosted.org/packages/f3/8b/e0cc70a7601f4c4104eed8edcfba5801143448954baa7aa5e8fdd052eee6/kage-genotyper-0.0.15.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.15
2024-01-10T15:15:17,124   Found link https://files.pythonhosted.org/packages/e6/d1/5686f2e34b84a0800c2f8ad566d16ae77ce5d0f42348ffbf48e62c360fe2/kage-genotyper-0.0.16.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.16
2024-01-10T15:15:17,125   Found link https://files.pythonhosted.org/packages/38/fb/7fc95292837f188450095b39cba3774e469cd086c1fbc646a67168fff033/kage-genotyper-0.0.17.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.17
2024-01-10T15:15:17,125   Found link https://files.pythonhosted.org/packages/11/d9/ac03f00ab30367578bb4b736502f5fe689b0eaa939bcf94d918c265bc66e/kage-genotyper-0.0.18.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.18
2024-01-10T15:15:17,126   Found link https://files.pythonhosted.org/packages/0f/78/d9e9825f272271a0710a2b61012c0d4408db5330306fbe7f9e44655f35c1/kage-genotyper-0.0.19.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.19
2024-01-10T15:15:17,126   Found link https://files.pythonhosted.org/packages/27/1c/1c7840b44249035052e4755c560195f8fc3e3bb9eb0c5c7ef948cfdd7b81/kage-genotyper-0.0.20.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.20
2024-01-10T15:15:17,127   Found link https://files.pythonhosted.org/packages/a0/22/7a0ee3155f5dcb657d1bb2b45d005a5b809ca34b5efae40e2e8fd8a5be4e/kage-genotyper-0.0.21.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.21
2024-01-10T15:15:17,128   Found link https://files.pythonhosted.org/packages/e5/85/7107f0bddffb62199b75a0d83b1f2f147738b6288f9bcae648f682530538/kage-genotyper-0.0.22.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.22
2024-01-10T15:15:17,128   Found link https://files.pythonhosted.org/packages/4c/e6/e5bde91b67bc9c0e2214f2c7d5553a607fa9ab1f3cb7fcae077f7b66806c/kage-genotyper-0.0.23.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.23
2024-01-10T15:15:17,129   Found link https://files.pythonhosted.org/packages/2c/8b/dc4fdf2d083fb0c65d6cc2da49f912cbb7d84511c989a57e53d84396ab96/kage-genotyper-0.0.24.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.24
2024-01-10T15:15:17,130   Found link https://files.pythonhosted.org/packages/bd/82/1a0c533aaef379daaac2135e30b3d88828af5edbe197e92898853b2a4685/kage-genotyper-0.0.25.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.25
2024-01-10T15:15:17,130   Found link https://files.pythonhosted.org/packages/7e/bb/8b366a0178c24ad815438653c9e01602e62052069868f8c49f1c4ad6d8a3/kage-genotyper-0.0.26.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.26
2024-01-10T15:15:17,131   Found link https://files.pythonhosted.org/packages/ef/63/244a1b6a43e4e32b6a570481f97d5d6d609c53eee340d8748d081269355d/kage-genotyper-0.0.27.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.27
2024-01-10T15:15:17,132   Found link https://files.pythonhosted.org/packages/06/fd/b5325cd9790510b27b2ada67c89671cf629d00761ee7bcd2c54c0e7aa3ca/kage-genotyper-0.0.28.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.28
2024-01-10T15:15:17,132   Found link https://files.pythonhosted.org/packages/c4/13/28d486029d280fe02c2f7b2c40376ec7fc481ef1df68745df2948f602616/kage-genotyper-0.0.29.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.29
2024-01-10T15:15:17,133   Found link https://files.pythonhosted.org/packages/34/29/5624612fbd8ecc4fa9fa120a2c98a6b03990db6d0bd8b949450c31a0607a/kage-genotyper-0.0.30.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.30
2024-01-10T15:15:17,134   Found link https://files.pythonhosted.org/packages/e2/20/58431b71a41936744a457814111b46939b67bc9f5a8c5aa3286e97eeb370/kage-genotyper-0.1.0.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.1.0
2024-01-10T15:15:17,134   Found link https://files.pythonhosted.org/packages/60/02/88cd3521d06f167af9773608ac2db840bb7f90943fb8d9463436a2406baa/kage-genotyper-0.1.1.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.1.1
2024-01-10T15:15:17,135   Found link https://files.pythonhosted.org/packages/9d/11/2de2b62db1ed40a897bf2c8b31399ca3b3c774d5ad8732f69a08a3702261/kage-genotyper-0.1.2.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.1.2
2024-01-10T15:15:17,136   Found link https://files.pythonhosted.org/packages/a0/05/f5534cac773ba893d3c93012a0150dbf9f8cb535a3b33f1f03957d3dbd69/kage-genotyper-0.1.3.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.1.3
2024-01-10T15:15:17,136   Found link https://files.pythonhosted.org/packages/82/aa/9aced1ac4cc86f4bee19188f607e13563fb10b00353cf2dd43468ecf53b8/kage-genotyper-0.1.4.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.1.4
2024-01-10T15:15:17,137   Found link https://files.pythonhosted.org/packages/c7/e3/b7c4d3b74ba8925070ce4a3bf43649f3c2307e16f410784948827d60121a/kage-genotyper-0.1.5.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.1.5
2024-01-10T15:15:17,138   Found link https://files.pythonhosted.org/packages/03/2a/60bf909f494aa560ab360d944e5a8d50fb3c49e0b8234c66a8707450c700/kage-genotyper-0.1.6.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.1.6
2024-01-10T15:15:17,138   Found link https://files.pythonhosted.org/packages/92/a7/16ea375bfd0cedabe9ff3e3de05dac0200e29b8e10da32ca14fa2a08618a/kage-genotyper-0.1.7.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.1.7
2024-01-10T15:15:17,139   Found link https://files.pythonhosted.org/packages/38/17/f0baef7183ba4438de06bc31f1b8f2c0ff2d74d4c4722c3eb03b6775a1db/kage-genotyper-0.1.9.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.1.9
2024-01-10T15:15:17,139   Found link https://files.pythonhosted.org/packages/ea/65/6603d0188274d337bf016d69e92d70c0346b18cf82aee13e9636fb8a98ea/kage-genotyper-0.1.11.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.1.11
2024-01-10T15:15:17,140   Found link https://files.pythonhosted.org/packages/83/51/4614c411c210988f58596f9dd2074d917ba9e5434f0da4887dd7c1df7737/kage-genotyper-0.1.12.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.1.12
2024-01-10T15:15:17,140   Found link https://files.pythonhosted.org/packages/39/09/58efe36d13073b7e4e1d0a34ac7d4e5a30c05c6fb99a2e0723b4c7882285/kage-genotyper-0.1.13.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.1.13
2024-01-10T15:15:17,141   Found link https://files.pythonhosted.org/packages/77/c4/2bc34acb31ab5175cdb7a195a9fe1f59c7795cc859f869c5d5efd5dad759/kage-genotyper-0.1.14.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.1.14
2024-01-10T15:15:17,142   Found link https://files.pythonhosted.org/packages/77/e5/892007364823bbc1ff487614d77afcd1b738dadf40009ee9a7c4baf3dc41/kage-genotyper-0.2.0.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.2.0
2024-01-10T15:15:17,143   Found link https://files.pythonhosted.org/packages/c0/22/2af38d12dc8622e10ea42e304ba06fe3655398885f043098ff22a0725652/kage-genotyper-0.2.1.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.2.1
2024-01-10T15:15:17,143   Found link https://files.pythonhosted.org/packages/bd/65/426b8d4ed8b16fa400bd19959a26592979c02947830463d8da779476a20c/kage-genotyper-0.2.2.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.2.2
2024-01-10T15:15:17,144   Found link https://files.pythonhosted.org/packages/c3/8f/95df6d19af07be70be24557f51402a59aa7ce7e2e6ffa6fb041070c41582/kage-genotyper-0.2.3.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.2.3
2024-01-10T15:15:17,145   Found link https://files.pythonhosted.org/packages/70/14/3538d6180ab9c9be1eda254b5863c70777e456de977b6225c43910925f15/kage-genotyper-0.2.4.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.2.4
2024-01-10T15:15:17,145   Found link https://files.pythonhosted.org/packages/1c/a5/c6591ac37f3fc7bdf32a74ce53db483b9b15779fa388d2f133eea500915d/kage-genotyper-0.2.5.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.2.5
2024-01-10T15:15:17,146   Found link https://files.pythonhosted.org/packages/ca/46/4ff6a1f5155651e33979d6535c2e33e16e16a503099b235238cdb530ba8b/kage-genotyper-0.2.6.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.2.6
2024-01-10T15:15:17,147   Found link https://files.pythonhosted.org/packages/6c/6d/ad14f41ec3a5c63c35ac4d8b407788a1547d426c3ef80e8867f440cb1d2a/kage-genotyper-0.2.7.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.2.7
2024-01-10T15:15:17,148   Found link https://files.pythonhosted.org/packages/fb/c1/945240232ad7210eac96e649629c70bfdf07baa2beb559976a78674fc9ec/kage-genotyper-0.2.8.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.2.8
2024-01-10T15:15:17,148   Found link https://files.pythonhosted.org/packages/ae/86/64b1d7884b70e1a9c9c08ef4153ea789bc3546eb33619f73784515be155b/kage-genotyper-2.0.0.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 2.0.0
2024-01-10T15:15:17,149   Found link https://files.pythonhosted.org/packages/0d/10/8fdfd069366f840cbe478efecf21d70ce092b203ff54a9e156818fa4104c/kage-genotyper-2.0.1.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 2.0.1
2024-01-10T15:15:17,149   Found link https://files.pythonhosted.org/packages/97/c7/e23da49e587fee0cc4eda789e1c0f519f07bcdf994f882647800a867b6ab/kage-genotyper-2.0.2.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 2.0.2
2024-01-10T15:15:17,150   Found link https://files.pythonhosted.org/packages/9c/b9/f7b05c506a4d5ba8a00a77e9846703f39c4d22d391dd9f9447382ac1c97b/kage-genotyper-2.0.3.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 2.0.3
2024-01-10T15:15:17,150 Fetching project page and analyzing links: https://www.piwheels.org/simple/kage-genotyper/
2024-01-10T15:15:17,151 Getting page https://www.piwheels.org/simple/kage-genotyper/
2024-01-10T15:15:17,153 Found index url https://www.piwheels.org/simple/
2024-01-10T15:15:17,316 Fetched page https://www.piwheels.org/simple/kage-genotyper/ as text/html
2024-01-10T15:15:17,330   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-2.0.2-py3-none-any.whl#sha256=73248dc4ec9926544fb7143ef9243d8c7304ff08d9d0486cf93baa9f05ced5e7 (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,330   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-2.0.1-py3-none-any.whl#sha256=2837a0144f0061d3fd1e073601e65485b0ae373ea9e751b0fbe3b1289df15164 (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,331   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-2.0.0-py3-none-any.whl#sha256=3018148bbf0c73eb554b210e6d073f4dcdc0cbe2b332742631b509f30ee899a5 (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,332   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.2.8-py3-none-any.whl#sha256=4b39f939884b9a8d71addf1e118b122decbd1fdd0762017f9b13b1d7d2662e44 (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,332   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.2.7-py3-none-any.whl#sha256=8b95dcd13302dc1aeb5a90560d02410b2f9917286fa3c664bb9b82b5b3cd4667 (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,333   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.2.6-py3-none-any.whl#sha256=40ecf95a0cd3bbfd4aed84c5ec136abdc028509b54dfba312d6f4a12ebcb74ff (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,334   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.2.5-py3-none-any.whl#sha256=f4ad36936c43302464dbf960a90e948e2f98adbb0d47dacb114d8f4867056001 (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,334   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.2.4-py3-none-any.whl#sha256=cdb335691524a6f2b06b79a2a3675f9756e7d2e22823b02f6fedcaf4c369ea2f (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,335   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.2.3-py3-none-any.whl#sha256=6964f2b2b0b90ba2e872e5f10f422b0b6f538318362a4307c4688b77d43805d2 (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,336   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.2.2-py3-none-any.whl#sha256=88d2948dca9541da3d416e6931026b4f4cf80b78c15c58a58b9ce9ae1665e343 (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,336   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.2.1-py3-none-any.whl#sha256=787bcfd15fdadab85ee28dd29967a3f92c4302cb16549911d93f7b95ac14c50d (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,337   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.2.0-py3-none-any.whl#sha256=c6f295d7ee07f206eb458327d59668b39e20994daa63a92c41f5eea2b751c768 (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,337   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.1.14-py3-none-any.whl#sha256=89aa46552e9ebf050aee9b3e46e89416d8f1aea98bd1b612338c3fda037644ac (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,338   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.1.13-py3-none-any.whl#sha256=9bab52d5e6efcb201a0c5e79e1e7137c1edb5fbe54012b27da2e1ecec3430b40 (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,338   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.1.12-py3-none-any.whl#sha256=cd646570f0e14c8ab99fcc6d060f5fd865d19cf26c182b9496dbd5036ef8474f (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,339   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.1.11-py3-none-any.whl#sha256=712cbb5cdf0871b3e86a1bfe294160b9dd2f5e975cbeb0b069608b05e61c2e63 (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,339   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.1.9-py3-none-any.whl#sha256=abd4c09ec1c0e4e768343edc00f128ef5051e536f64ea1cf8574bc4189560df4 (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,340   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.1.7-py3-none-any.whl#sha256=8f43fee2c6e410f98da126e538c321be6635f13c4117ae655b5903f85ba61a37 (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,341   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.1.6-py3-none-any.whl#sha256=9a7614ebd0f8fbe1f2ffd60e6026cca8df99304e7df1a63f9a12e083dd8783c9 (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,341   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.1.5-py3-none-any.whl#sha256=863ff32767fc3a5a4edf2d12a875bdb5282e1d7585f5cccadd07e34291bace14 (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,342   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.1.4-py3-none-any.whl#sha256=1e408f1ed6d4777d59ddd7a160fb14c4c1f41d5c812a10b71d15c6691a376ba9 (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,342   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.1.3-py3-none-any.whl#sha256=019dc5797ec7e2f674c903aec8ffec4e6144d072983bc357b84210d089c2aa00 (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,343   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.1.2-py3-none-any.whl#sha256=7b7e6244fdda2b946ac39cc1f3f5ec058a048b088badccf4a7b51d8558a836c0 (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,344   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.1.1-py3-none-any.whl#sha256=38c35463a41fb2abfeb920906eeeff7c05abd5b24007b70ab960699884a57030 (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,344   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.1.0-py3-none-any.whl#sha256=6982f507c36702a89842b3b169e08b64968e0a45d8cc1f240e9bab2d00fa6e30 (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,344   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.30-py3-none-any.whl#sha256=925040198aeaf8ee50b389c1f5b53028e48e9864866f33f19b3c5683d09b88c0 (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,345   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.29-py3-none-any.whl#sha256=a3d4f0096efe9011cee430d801727472fc57ae199b0a9c2505c7c1dced2a1f42 (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,345   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.28-py3-none-any.whl#sha256=300dac9a2f965c3a5db0db983ff25a0f3f87d77fdf2e4337a39b9d32960ebf35 (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,346   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.27-py3-none-any.whl#sha256=158cb4cc23fc99e88fffd12cc33f45706f00ffd4bf61f8e154c6784da6ad3dab (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,347   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.26-py3-none-any.whl#sha256=47ba5f3687b9a97062b67420b47afffa3db43ab055ab75214953f259bf27097a (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,347   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.25-py3-none-any.whl#sha256=2d96189cd413c6434b7493e54e3c958233b879124d1196fd2af50d8b3bb3f801 (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,348   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.24-py3-none-any.whl#sha256=b71fc42047e6354a93f096624bba70c64d698923d0c463291ba16a9330719df3 (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,348   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.23-py3-none-any.whl#sha256=c18fe0b577c6929804d2c27354474dff0c3ee75b07aa56352a7a58cad13e6faa (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,349   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.22-py3-none-any.whl#sha256=d69afe43c7ad35a7f1a56f2bd46a364119ecc57afc5f66db5cb9441de6bde4be (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,350   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.21-py3-none-any.whl#sha256=986ef6dc08553b37b5f45a3f5d4fab3fe7b7533b66c46d61d0ccd7e1805808e9 (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,350   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.20-py3-none-any.whl#sha256=52ce4e67bf082e0c52c1e017279afb7f816d91a56ba7b84f05da7b2f90c5f773 (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,351   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.19-py3-none-any.whl#sha256=1e722fb7bd2ba87c1876b357e13c266b42cac5fe7a90181bdf470c0adf294a8b (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,351   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.18-py3-none-any.whl#sha256=e86a7b9cffd0dbcc1521c3de19e5df55b99115a71bb548f2987aca3e271eb3c4 (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,352   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.17-py3-none-any.whl#sha256=028c50f35435ecf5cc9340632b04277e33156d88e7b5a7845902e025f88bd9d3 (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,352   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.16-py3-none-any.whl#sha256=dab976f34303030cadeacc00def520c328db9330fcd801e2bcbd553b867566c4 (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,353   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.15-py3-none-any.whl#sha256=81609a0f4e374c51e06eeb78fe684d382f3004234eba4b9bb5f10677f62f185c (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,353   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.14-py3-none-any.whl#sha256=a08f7b62017bb01e15c21b4752a1c020e022b2d1c97e4f473c1b4e1486c786a1 (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,354   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.13-py3-none-any.whl#sha256=a256a7d8c6fbb49d6029a56d01e7608d04434d6016d8851d750b3c0a946fe0d4 (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,354   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.12-py3-none-any.whl#sha256=7d3956620409c7b4f5acbfb7ba2f2c5b1ac4fa3761bc803d9500f4e627943de5 (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,355   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.10-py3-none-any.whl#sha256=f0de4fec6f21e6c0e0fe926b55af6a9032fb8af3ff0ac0a4e462c49fa9fefaf5 (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,355   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.9-py3-none-any.whl#sha256=6728e2c34e7473f450ba0dc3b680189ec324937e583ce456df04d4352047531b (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,356   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.8-py3-none-any.whl#sha256=17c38eb9469806ae1d16028b61450a754b7a2e9607b63cf4cb2c1bc4cd19f562 (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,356   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.7-py3-none-any.whl#sha256=6c45550e73562e3543e4dedf63f5e42897169f62a701603f2c4a460ac1e0b5fa (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,357   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.6-py3-none-any.whl#sha256=7f26289022b49cd9611615aa9f542bea798b0827f5df45e23c5d65148fb2f169 (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,358   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.5-py3-none-any.whl#sha256=dbca21ae8964d1bf38306442e517c6b17b688a29519f7675082be82135c4c98f (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,358   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.4-py3-none-any.whl#sha256=a279c71d67ea133f1cf0818eb5c559c97e5f2460cc45aba044dd17abf30d6446 (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,359   Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.3-py3-none-any.whl#sha256=7d52b7bdc251d8fa41b2627126137f9c9d6b34e76dcc9d8c85de8d0d42f6bf33 (from https://www.piwheels.org/simple/kage-genotyper/)
2024-01-10T15:15:17,359 Skipping link: not a file: https://www.piwheels.org/simple/kage-genotyper/
2024-01-10T15:15:17,360 Skipping link: not a file: https://pypi.org/simple/kage-genotyper/
2024-01-10T15:15:17,386 Given no hashes to check 1 links for project 'kage-genotyper': discarding no candidates
2024-01-10T15:15:17,405 Collecting kage-genotyper==2.0.3
2024-01-10T15:15:17,408   Created temporary directory: /tmp/pip-unpack-3fl_8121
2024-01-10T15:15:17,883   Downloading kage-genotyper-2.0.3.tar.gz (12.8 MB)
2024-01-10T15:15:23,103   Added kage-genotyper==2.0.3 from https://files.pythonhosted.org/packages/9c/b9/f7b05c506a4d5ba8a00a77e9846703f39c4d22d391dd9f9447382ac1c97b/kage-genotyper-2.0.3.tar.gz to build tracker '/tmp/pip-build-tracker-la5lf_pe'
2024-01-10T15:15:23,104   Running setup.py (path:/tmp/pip-wheel-oddf6y4s/kage-genotyper_88edf8f0d5df4e4bbbfab2f5c35231e2/setup.py) egg_info for package kage-genotyper
2024-01-10T15:15:23,105   Created temporary directory: /tmp/pip-pip-egg-info-po7xj3m8
2024-01-10T15:15:23,106   Preparing metadata (setup.py): started
2024-01-10T15:15:23,107   Running command python setup.py egg_info
2024-01-10T15:15:23,940   running egg_info
2024-01-10T15:15:23,941   creating /tmp/pip-pip-egg-info-po7xj3m8/kage_genotyper.egg-info
2024-01-10T15:15:24,532   writing /tmp/pip-pip-egg-info-po7xj3m8/kage_genotyper.egg-info/PKG-INFO
2024-01-10T15:15:24,566   writing dependency_links to /tmp/pip-pip-egg-info-po7xj3m8/kage_genotyper.egg-info/dependency_links.txt
2024-01-10T15:15:24,587   writing entry points to /tmp/pip-pip-egg-info-po7xj3m8/kage_genotyper.egg-info/entry_points.txt
2024-01-10T15:15:24,596   writing requirements to /tmp/pip-pip-egg-info-po7xj3m8/kage_genotyper.egg-info/requires.txt
2024-01-10T15:15:24,610   writing top-level names to /tmp/pip-pip-egg-info-po7xj3m8/kage_genotyper.egg-info/top_level.txt
2024-01-10T15:15:24,612   writing manifest file '/tmp/pip-pip-egg-info-po7xj3m8/kage_genotyper.egg-info/SOURCES.txt'
2024-01-10T15:15:24,855   reading manifest file '/tmp/pip-pip-egg-info-po7xj3m8/kage_genotyper.egg-info/SOURCES.txt'
2024-01-10T15:15:24,857   adding license file 'LICENSE'
2024-01-10T15:15:24,861   writing manifest file '/tmp/pip-pip-egg-info-po7xj3m8/kage_genotyper.egg-info/SOURCES.txt'
2024-01-10T15:15:24,963   Preparing metadata (setup.py): finished with status 'done'
2024-01-10T15:15:24,969   Source in /tmp/pip-wheel-oddf6y4s/kage-genotyper_88edf8f0d5df4e4bbbfab2f5c35231e2 has version 2.0.3, which satisfies requirement kage-genotyper==2.0.3 from https://files.pythonhosted.org/packages/9c/b9/f7b05c506a4d5ba8a00a77e9846703f39c4d22d391dd9f9447382ac1c97b/kage-genotyper-2.0.3.tar.gz
2024-01-10T15:15:24,974   Removed kage-genotyper==2.0.3 from https://files.pythonhosted.org/packages/9c/b9/f7b05c506a4d5ba8a00a77e9846703f39c4d22d391dd9f9447382ac1c97b/kage-genotyper-2.0.3.tar.gz from build tracker '/tmp/pip-build-tracker-la5lf_pe'
2024-01-10T15:15:24,983 Created temporary directory: /tmp/pip-unpack-k4uj757s
2024-01-10T15:15:24,985 Created temporary directory: /tmp/pip-unpack-ht65h2uh
2024-01-10T15:15:25,026 Building wheels for collected packages: kage-genotyper
2024-01-10T15:15:25,034   Created temporary directory: /tmp/pip-wheel-iweyus4k
2024-01-10T15:15:25,035   Building wheel for kage-genotyper (setup.py): started
2024-01-10T15:15:25,037   Destination directory: /tmp/pip-wheel-iweyus4k
2024-01-10T15:15:25,042   Running command python setup.py bdist_wheel
2024-01-10T15:15:25,942   running bdist_wheel
2024-01-10T15:15:26,086   running build
2024-01-10T15:15:26,087   running build_py
2024-01-10T15:15:26,117   creating build
2024-01-10T15:15:26,117   creating build/lib
2024-01-10T15:15:26,119   creating build/lib/kage
2024-01-10T15:15:26,120   copying kage/util.py -> build/lib/kage
2024-01-10T15:15:26,123   copying kage/command_line_interface.py -> build/lib/kage
2024-01-10T15:15:26,126   copying kage/__init__.py -> build/lib/kage
2024-01-10T15:15:26,128   copying kage/variant_filtering.py -> build/lib/kage
2024-01-10T15:15:26,130   copying kage/node_counts.py -> build/lib/kage
2024-01-10T15:15:26,132   copying kage/naive_genotyper.py -> build/lib/kage
2024-01-10T15:15:26,134   copying kage/configuration.py -> build/lib/kage
2024-01-10T15:15:26,137   copying kage/io.py -> build/lib/kage
2024-01-10T15:15:26,141   creating build/lib/kage/genotyping
2024-01-10T15:15:26,142   copying kage/genotyping/__init__.py -> build/lib/kage/genotyping
2024-01-10T15:15:26,144   copying kage/genotyping/multiallelic.py -> build/lib/kage/genotyping
2024-01-10T15:15:26,147   copying kage/genotyping/combination_model_genotyper.py -> build/lib/kage/genotyping
2024-01-10T15:15:26,150   creating build/lib/kage/simulation
2024-01-10T15:15:26,151   copying kage/simulation/simulation.py -> build/lib/kage/simulation
2024-01-10T15:15:26,154   copying kage/simulation/__init__.py -> build/lib/kage/simulation
2024-01-10T15:15:26,156   copying kage/simulation/read_simulation.py -> build/lib/kage/simulation
2024-01-10T15:15:26,159   creating build/lib/kage/preprocessing
2024-01-10T15:15:26,161   copying kage/preprocessing/__init__.py -> build/lib/kage/preprocessing
2024-01-10T15:15:26,163   copying kage/preprocessing/variants.py -> build/lib/kage/preprocessing
2024-01-10T15:15:26,167   creating build/lib/kage/models
2024-01-10T15:15:26,169   copying kage/models/helper_model.py -> build/lib/kage/models
2024-01-10T15:15:26,172   copying kage/models/__init__.py -> build/lib/kage/models
2024-01-10T15:15:26,174   copying kage/models/mapping_model.py -> build/lib/kage/models
2024-01-10T15:15:26,177   copying kage/models/models.py -> build/lib/kage/models
2024-01-10T15:15:26,181   copying kage/models/sampling_combo_model.py -> build/lib/kage/models
2024-01-10T15:15:26,184   copying kage/models/helper_index_using_duplicate_counts.py -> build/lib/kage/models
2024-01-10T15:15:26,187   copying kage/models/helper_index.py -> build/lib/kage/models
2024-01-10T15:15:26,190   copying kage/models/joint_distribution.py -> build/lib/kage/models
2024-01-10T15:15:26,194   creating build/lib/kage/indexing
2024-01-10T15:15:26,195   copying kage/indexing/div.py -> build/lib/kage/indexing
2024-01-10T15:15:26,198   copying kage/indexing/path_variant_indexing.py -> build/lib/kage/indexing
2024-01-10T15:15:26,201   copying kage/indexing/sparse_haplotype_matrix.py -> build/lib/kage/indexing
2024-01-10T15:15:26,204   copying kage/indexing/signatures.py -> build/lib/kage/indexing
2024-01-10T15:15:26,208   copying kage/indexing/__init__.py -> build/lib/kage/indexing
2024-01-10T15:15:26,211   copying kage/indexing/path_based_count_model.py -> build/lib/kage/indexing
2024-01-10T15:15:26,215   copying kage/indexing/kmer_scoring.py -> build/lib/kage/indexing
2024-01-10T15:15:26,218   copying kage/indexing/graph.py -> build/lib/kage/indexing
2024-01-10T15:15:26,222   copying kage/indexing/tricky_variants.py -> build/lib/kage/indexing
2024-01-10T15:15:26,225   copying kage/indexing/modulo_filter.py -> build/lib/kage/indexing
2024-01-10T15:15:26,227   copying kage/indexing/paths.py -> build/lib/kage/indexing
2024-01-10T15:15:26,231   copying kage/indexing/main.py -> build/lib/kage/indexing
2024-01-10T15:15:26,235   copying kage/indexing/index_bundle.py -> build/lib/kage/indexing
2024-01-10T15:15:26,237   creating build/lib/kage/modles
2024-01-10T15:15:26,239   copying kage/modles/__init__.py -> build/lib/kage/modles
2024-01-10T15:15:26,242   creating build/lib/kage/analysis
2024-01-10T15:15:26,243   copying kage/analysis/__init__.py -> build/lib/kage/analysis
2024-01-10T15:15:26,246   copying kage/analysis/variant_kmer_analyser.py -> build/lib/kage/analysis
2024-01-10T15:15:26,248   copying kage/analysis/debugging.py -> build/lib/kage/analysis
2024-01-10T15:15:26,251   copying kage/analysis/analysis.py -> build/lib/kage/analysis
2024-01-10T15:15:26,255   copying kage/analysis/genotype_accuracy.py -> build/lib/kage/analysis
2024-01-10T15:15:26,259   creating build/lib/kage/benchmarking
2024-01-10T15:15:26,260   copying kage/benchmarking/__init__.py -> build/lib/kage/benchmarking
2024-01-10T15:15:26,262   copying kage/benchmarking/vcf_preprocessing.py -> build/lib/kage/benchmarking
2024-01-10T15:15:26,266   creating build/lib/kage/glimpse
2024-01-10T15:15:26,268   copying kage/glimpse/__init__.py -> build/lib/kage/glimpse
2024-01-10T15:15:26,270   copying kage/glimpse/glimpse_wrapper.py -> build/lib/kage/glimpse
2024-01-10T15:15:26,314   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-01-10T15:15:26,315   !!

2024-01-10T15:15:26,317           ********************************************************************************
2024-01-10T15:15:26,317           Please avoid running ``setup.py`` directly.
2024-01-10T15:15:26,318           Instead, use pypa/build, pypa/installer or other
2024-01-10T15:15:26,319           standards-based tools.

2024-01-10T15:15:26,320           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-01-10T15:15:26,321           ********************************************************************************

2024-01-10T15:15:26,322   !!
2024-01-10T15:15:26,323     self.initialize_options()
2024-01-10T15:15:26,353   installing to build/bdist.linux-armv7l/wheel
2024-01-10T15:15:26,353   running install
2024-01-10T15:15:26,377   running install_lib
2024-01-10T15:15:26,416   creating build/bdist.linux-armv7l
2024-01-10T15:15:26,417   creating build/bdist.linux-armv7l/wheel
2024-01-10T15:15:26,419   creating build/bdist.linux-armv7l/wheel/kage
2024-01-10T15:15:26,421   copying build/lib/kage/util.py -> build/bdist.linux-armv7l/wheel/kage
2024-01-10T15:15:26,424   copying build/lib/kage/command_line_interface.py -> build/bdist.linux-armv7l/wheel/kage
2024-01-10T15:15:26,429   copying build/lib/kage/__init__.py -> build/bdist.linux-armv7l/wheel/kage
2024-01-10T15:15:26,432   creating build/bdist.linux-armv7l/wheel/kage/genotyping
2024-01-10T15:15:26,433   copying build/lib/kage/genotyping/__init__.py -> build/bdist.linux-armv7l/wheel/kage/genotyping
2024-01-10T15:15:26,435   copying build/lib/kage/genotyping/multiallelic.py -> build/bdist.linux-armv7l/wheel/kage/genotyping
2024-01-10T15:15:26,438   copying build/lib/kage/genotyping/combination_model_genotyper.py -> build/bdist.linux-armv7l/wheel/kage/genotyping
2024-01-10T15:15:26,442   creating build/bdist.linux-armv7l/wheel/kage/simulation
2024-01-10T15:15:26,443   copying build/lib/kage/simulation/simulation.py -> build/bdist.linux-armv7l/wheel/kage/simulation
2024-01-10T15:15:26,448   copying build/lib/kage/simulation/__init__.py -> build/bdist.linux-armv7l/wheel/kage/simulation
2024-01-10T15:15:26,451   copying build/lib/kage/simulation/read_simulation.py -> build/bdist.linux-armv7l/wheel/kage/simulation
2024-01-10T15:15:26,460   creating build/bdist.linux-armv7l/wheel/kage/preprocessing
2024-01-10T15:15:26,462   copying build/lib/kage/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/kage/preprocessing
2024-01-10T15:15:26,465   copying build/lib/kage/preprocessing/variants.py -> build/bdist.linux-armv7l/wheel/kage/preprocessing
2024-01-10T15:15:26,470   copying build/lib/kage/variant_filtering.py -> build/bdist.linux-armv7l/wheel/kage
2024-01-10T15:15:26,473   creating build/bdist.linux-armv7l/wheel/kage/models
2024-01-10T15:15:26,478   copying build/lib/kage/models/helper_model.py -> build/bdist.linux-armv7l/wheel/kage/models
2024-01-10T15:15:26,482   copying build/lib/kage/models/__init__.py -> build/bdist.linux-armv7l/wheel/kage/models
2024-01-10T15:15:26,484   copying build/lib/kage/models/mapping_model.py -> build/bdist.linux-armv7l/wheel/kage/models
2024-01-10T15:15:26,488   copying build/lib/kage/models/models.py -> build/bdist.linux-armv7l/wheel/kage/models
2024-01-10T15:15:26,491   copying build/lib/kage/models/sampling_combo_model.py -> build/bdist.linux-armv7l/wheel/kage/models
2024-01-10T15:15:26,495   copying build/lib/kage/models/helper_index_using_duplicate_counts.py -> build/bdist.linux-armv7l/wheel/kage/models
2024-01-10T15:15:26,497   copying build/lib/kage/models/helper_index.py -> build/bdist.linux-armv7l/wheel/kage/models
2024-01-10T15:15:26,500   copying build/lib/kage/models/joint_distribution.py -> build/bdist.linux-armv7l/wheel/kage/models
2024-01-10T15:15:26,503   creating build/bdist.linux-armv7l/wheel/kage/indexing
2024-01-10T15:15:26,504   copying build/lib/kage/indexing/div.py -> build/bdist.linux-armv7l/wheel/kage/indexing
2024-01-10T15:15:26,507   copying build/lib/kage/indexing/path_variant_indexing.py -> build/bdist.linux-armv7l/wheel/kage/indexing
2024-01-10T15:15:26,511   copying build/lib/kage/indexing/sparse_haplotype_matrix.py -> build/bdist.linux-armv7l/wheel/kage/indexing
2024-01-10T15:15:26,514   copying build/lib/kage/indexing/signatures.py -> build/bdist.linux-armv7l/wheel/kage/indexing
2024-01-10T15:15:26,518   copying build/lib/kage/indexing/__init__.py -> build/bdist.linux-armv7l/wheel/kage/indexing
2024-01-10T15:15:26,521   copying build/lib/kage/indexing/path_based_count_model.py -> build/bdist.linux-armv7l/wheel/kage/indexing
2024-01-10T15:15:26,524   copying build/lib/kage/indexing/kmer_scoring.py -> build/bdist.linux-armv7l/wheel/kage/indexing
2024-01-10T15:15:26,527   copying build/lib/kage/indexing/graph.py -> build/bdist.linux-armv7l/wheel/kage/indexing
2024-01-10T15:15:26,531   copying build/lib/kage/indexing/tricky_variants.py -> build/bdist.linux-armv7l/wheel/kage/indexing
2024-01-10T15:15:26,535   copying build/lib/kage/indexing/modulo_filter.py -> build/bdist.linux-armv7l/wheel/kage/indexing
2024-01-10T15:15:26,538   copying build/lib/kage/indexing/paths.py -> build/bdist.linux-armv7l/wheel/kage/indexing
2024-01-10T15:15:26,541   copying build/lib/kage/indexing/main.py -> build/bdist.linux-armv7l/wheel/kage/indexing
2024-01-10T15:15:26,545   copying build/lib/kage/indexing/index_bundle.py -> build/bdist.linux-armv7l/wheel/kage/indexing
2024-01-10T15:15:26,548   creating build/bdist.linux-armv7l/wheel/kage/modles
2024-01-10T15:15:26,549   copying build/lib/kage/modles/__init__.py -> build/bdist.linux-armv7l/wheel/kage/modles
2024-01-10T15:15:26,552   creating build/bdist.linux-armv7l/wheel/kage/analysis
2024-01-10T15:15:26,554   copying build/lib/kage/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/kage/analysis
2024-01-10T15:15:26,557   copying build/lib/kage/analysis/variant_kmer_analyser.py -> build/bdist.linux-armv7l/wheel/kage/analysis
2024-01-10T15:15:26,559   copying build/lib/kage/analysis/debugging.py -> build/bdist.linux-armv7l/wheel/kage/analysis
2024-01-10T15:15:26,563   copying build/lib/kage/analysis/analysis.py -> build/bdist.linux-armv7l/wheel/kage/analysis
2024-01-10T15:15:26,566   copying build/lib/kage/analysis/genotype_accuracy.py -> build/bdist.linux-armv7l/wheel/kage/analysis
2024-01-10T15:15:26,570   copying build/lib/kage/node_counts.py -> build/bdist.linux-armv7l/wheel/kage
2024-01-10T15:15:26,573   copying build/lib/kage/naive_genotyper.py -> build/bdist.linux-armv7l/wheel/kage
2024-01-10T15:15:26,576   copying build/lib/kage/configuration.py -> build/bdist.linux-armv7l/wheel/kage
2024-01-10T15:15:26,579   creating build/bdist.linux-armv7l/wheel/kage/benchmarking
2024-01-10T15:15:26,580   copying build/lib/kage/benchmarking/__init__.py -> build/bdist.linux-armv7l/wheel/kage/benchmarking
2024-01-10T15:15:26,582   copying build/lib/kage/benchmarking/vcf_preprocessing.py -> build/bdist.linux-armv7l/wheel/kage/benchmarking
2024-01-10T15:15:26,592   creating build/bdist.linux-armv7l/wheel/kage/glimpse
2024-01-10T15:15:26,592   copying build/lib/kage/glimpse/__init__.py -> build/bdist.linux-armv7l/wheel/kage/glimpse
2024-01-10T15:15:26,594   copying build/lib/kage/glimpse/glimpse_wrapper.py -> build/bdist.linux-armv7l/wheel/kage/glimpse
2024-01-10T15:15:26,597   copying build/lib/kage/io.py -> build/bdist.linux-armv7l/wheel/kage
2024-01-10T15:15:26,599   running install_egg_info
2024-01-10T15:15:26,631   running egg_info
2024-01-10T15:15:26,657   writing kage_genotyper.egg-info/PKG-INFO
2024-01-10T15:15:26,660   writing dependency_links to kage_genotyper.egg-info/dependency_links.txt
2024-01-10T15:15:26,661   writing entry points to kage_genotyper.egg-info/entry_points.txt
2024-01-10T15:15:26,663   writing requirements to kage_genotyper.egg-info/requires.txt
2024-01-10T15:15:26,664   writing top-level names to kage_genotyper.egg-info/top_level.txt
2024-01-10T15:15:26,704   reading manifest file 'kage_genotyper.egg-info/SOURCES.txt'
2024-01-10T15:15:26,713   adding license file 'LICENSE'
2024-01-10T15:15:26,718   writing manifest file 'kage_genotyper.egg-info/SOURCES.txt'
2024-01-10T15:15:26,720   Copying kage_genotyper.egg-info to build/bdist.linux-armv7l/wheel/kage_genotyper-2.0.3-py3.11.egg-info
2024-01-10T15:15:26,734   running install_scripts
2024-01-10T15:15:26,753   creating build/bdist.linux-armv7l/wheel/kage_genotyper-2.0.3.dist-info/WHEEL
2024-01-10T15:15:26,756   creating '/tmp/pip-wheel-iweyus4k/kage_genotyper-2.0.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-01-10T15:15:26,758   adding 'kage/__init__.py'
2024-01-10T15:15:26,761   adding 'kage/command_line_interface.py'
2024-01-10T15:15:26,763   adding 'kage/configuration.py'
2024-01-10T15:15:26,765   adding 'kage/io.py'
2024-01-10T15:15:26,766   adding 'kage/naive_genotyper.py'
2024-01-10T15:15:26,767   adding 'kage/node_counts.py'
2024-01-10T15:15:26,769   adding 'kage/util.py'
2024-01-10T15:15:26,770   adding 'kage/variant_filtering.py'
2024-01-10T15:15:26,772   adding 'kage/analysis/__init__.py'
2024-01-10T15:15:26,775   adding 'kage/analysis/analysis.py'
2024-01-10T15:15:26,777   adding 'kage/analysis/debugging.py'
2024-01-10T15:15:26,780   adding 'kage/analysis/genotype_accuracy.py'
2024-01-10T15:15:26,781   adding 'kage/analysis/variant_kmer_analyser.py'
2024-01-10T15:15:26,783   adding 'kage/benchmarking/__init__.py'
2024-01-10T15:15:26,785   adding 'kage/benchmarking/vcf_preprocessing.py'
2024-01-10T15:15:26,787   adding 'kage/genotyping/__init__.py'
2024-01-10T15:15:26,789   adding 'kage/genotyping/combination_model_genotyper.py'
2024-01-10T15:15:26,791   adding 'kage/genotyping/multiallelic.py'
2024-01-10T15:15:26,793   adding 'kage/glimpse/__init__.py'
2024-01-10T15:15:26,794   adding 'kage/glimpse/glimpse_wrapper.py'
2024-01-10T15:15:26,796   adding 'kage/indexing/__init__.py'
2024-01-10T15:15:26,797   adding 'kage/indexing/div.py'
2024-01-10T15:15:26,800   adding 'kage/indexing/graph.py'
2024-01-10T15:15:26,801   adding 'kage/indexing/index_bundle.py'
2024-01-10T15:15:26,803   adding 'kage/indexing/kmer_scoring.py'
2024-01-10T15:15:26,805   adding 'kage/indexing/main.py'
2024-01-10T15:15:26,807   adding 'kage/indexing/modulo_filter.py'
2024-01-10T15:15:26,810   adding 'kage/indexing/path_based_count_model.py'
2024-01-10T15:15:26,812   adding 'kage/indexing/path_variant_indexing.py'
2024-01-10T15:15:26,815   adding 'kage/indexing/paths.py'
2024-01-10T15:15:26,822   adding 'kage/indexing/signatures.py'
2024-01-10T15:15:26,824   adding 'kage/indexing/sparse_haplotype_matrix.py'
2024-01-10T15:15:26,826   adding 'kage/indexing/tricky_variants.py'
2024-01-10T15:15:26,828   adding 'kage/models/__init__.py'
2024-01-10T15:15:26,829   adding 'kage/models/helper_index.py'
2024-01-10T15:15:26,831   adding 'kage/models/helper_index_using_duplicate_counts.py'
2024-01-10T15:15:26,832   adding 'kage/models/helper_model.py'
2024-01-10T15:15:26,834   adding 'kage/models/joint_distribution.py'
2024-01-10T15:15:26,836   adding 'kage/models/mapping_model.py'
2024-01-10T15:15:26,837   adding 'kage/models/models.py'
2024-01-10T15:15:26,840   adding 'kage/models/sampling_combo_model.py'
2024-01-10T15:15:26,842   adding 'kage/modles/__init__.py'
2024-01-10T15:15:26,843   adding 'kage/preprocessing/__init__.py'
2024-01-10T15:15:26,847   adding 'kage/preprocessing/variants.py'
2024-01-10T15:15:26,849   adding 'kage/simulation/__init__.py'
2024-01-10T15:15:26,851   adding 'kage/simulation/read_simulation.py'
2024-01-10T15:15:26,853   adding 'kage/simulation/simulation.py'
2024-01-10T15:15:26,859   adding 'kage_genotyper-2.0.3.dist-info/LICENSE'
2024-01-10T15:15:26,861   adding 'kage_genotyper-2.0.3.dist-info/METADATA'
2024-01-10T15:15:26,862   adding 'kage_genotyper-2.0.3.dist-info/WHEEL'
2024-01-10T15:15:26,862   adding 'kage_genotyper-2.0.3.dist-info/entry_points.txt'
2024-01-10T15:15:26,863   adding 'kage_genotyper-2.0.3.dist-info/top_level.txt'
2024-01-10T15:15:26,865   adding 'kage_genotyper-2.0.3.dist-info/RECORD'
2024-01-10T15:15:26,868   removing build/bdist.linux-armv7l/wheel
2024-01-10T15:15:26,985   Building wheel for kage-genotyper (setup.py): finished with status 'done'
2024-01-10T15:15:26,988   Created wheel for kage-genotyper: filename=kage_genotyper-2.0.3-py3-none-any.whl size=122320 sha256=ace1bca97b349b5de977707168a1b1fed1ccacbef8ec07e3d3d02f9a744e0725
2024-01-10T15:15:26,990   Stored in directory: /tmp/pip-ephem-wheel-cache-m5johqwu/wheels/da/ce/bf/612510f4a3557ce393b04f2c060037f8fe8a58a8b92008922d
2024-01-10T15:15:27,002 Successfully built kage-genotyper
2024-01-10T15:15:27,015 Removed build tracker: '/tmp/pip-build-tracker-la5lf_pe'