2024-01-10T16:19:33,611 Created temporary directory: /tmp/pip-build-tracker-_2vbqg4m
2024-01-10T16:19:33,612 Initialized build tracking at /tmp/pip-build-tracker-_2vbqg4m
2024-01-10T16:19:33,613 Created build tracker: /tmp/pip-build-tracker-_2vbqg4m
2024-01-10T16:19:33,613 Entered build tracker: /tmp/pip-build-tracker-_2vbqg4m
2024-01-10T16:19:33,614 Created temporary directory: /tmp/pip-wheel-7_6ibzpz
2024-01-10T16:19:33,617 Created temporary directory: /tmp/pip-ephem-wheel-cache-gmx2qzds
2024-01-10T16:19:33,639 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-01-10T16:19:33,642 2 location(s) to search for versions of depht:
2024-01-10T16:19:33,642 * https://pypi.org/simple/depht/
2024-01-10T16:19:33,642 * https://www.piwheels.org/simple/depht/
2024-01-10T16:19:33,643 Fetching project page and analyzing links: https://pypi.org/simple/depht/
2024-01-10T16:19:33,644 Getting page https://pypi.org/simple/depht/
2024-01-10T16:19:33,645 Found index url https://pypi.org/simple/
2024-01-10T16:19:33,861 Fetched page https://pypi.org/simple/depht/ as application/vnd.pypi.simple.v1+json
2024-01-10T16:19:33,866   Skipping link: No binaries permitted for depht: https://files.pythonhosted.org/packages/19/72/fe63d35459233b43e179b3579a137c84b3586a1ec3f6674ce1340fadc2fc/depht-1.0.0-py3-none-any.whl (from https://pypi.org/simple/depht/) (requires-python:>=3.6)
2024-01-10T16:19:33,867   Found link https://files.pythonhosted.org/packages/91/61/e0c3c1e725b4a281c087467594e908e0a46e1a91ec288ac09b22c4a4ac17/depht-1.0.0.tar.gz (from https://pypi.org/simple/depht/) (requires-python:>=3.6), version: 1.0.0
2024-01-10T16:19:33,867   Skipping link: No binaries permitted for depht: https://files.pythonhosted.org/packages/3a/8d/e2d2dea7750112dc8b17f17828c6700755e580cfbfadbb6ca1f29cfba3b1/depht-1.0.1-py3-none-any.whl (from https://pypi.org/simple/depht/) (requires-python:>=3.6)
2024-01-10T16:19:33,868   Found link https://files.pythonhosted.org/packages/39/4b/eda220e1c8d0f7fa2733a9ca9b4918e5ab3e61c8eae17fac32f8719f9e1d/depht-1.0.1.tar.gz (from https://pypi.org/simple/depht/) (requires-python:>=3.6), version: 1.0.1
2024-01-10T16:19:33,869   Skipping link: No binaries permitted for depht: https://files.pythonhosted.org/packages/32/5e/b4a44d00807cb6ace2704a7bcb063535c0d55fd66876c9f0dfb969311c1f/depht-1.0.2-py3-none-any.whl (from https://pypi.org/simple/depht/) (requires-python:>=3.6)
2024-01-10T16:19:33,870   Found link https://files.pythonhosted.org/packages/d9/e7/1db918963510d931b43704f804783319af47f7c82f5d9a2e53f6936bd67a/depht-1.0.2.tar.gz (from https://pypi.org/simple/depht/) (requires-python:>=3.6), version: 1.0.2
2024-01-10T16:19:33,871   Skipping link: No binaries permitted for depht: https://files.pythonhosted.org/packages/8b/99/c44ff60e08d7f5708286fb26fc216d2f7ca4ff46fd19b9aa76bbc031a4ac/depht-1.1.1-py3-none-any.whl (from https://pypi.org/simple/depht/) (requires-python:>=3.6)
2024-01-10T16:19:33,872   Found link https://files.pythonhosted.org/packages/cc/16/89e0098b689b09ff80d73950844760981a915f23f3cdb60e33b27ac96ad2/depht-1.1.1.tar.gz (from https://pypi.org/simple/depht/) (requires-python:>=3.6), version: 1.1.1
2024-01-10T16:19:33,872   Skipping link: No binaries permitted for depht: https://files.pythonhosted.org/packages/cc/b2/c5f4eb7fdc8eb091a14a01cba0e3a2a5756757cc34aa7b92289d00df78ad/depht-1.1.2-py3-none-any.whl (from https://pypi.org/simple/depht/) (requires-python:>=3.6)
2024-01-10T16:19:33,873   Found link https://files.pythonhosted.org/packages/8d/66/3be8e1fd8a0d732664b4afa5d2cdcaaacfd8074aa933df37ee16bad8cb71/depht-1.1.2.tar.gz (from https://pypi.org/simple/depht/) (requires-python:>=3.6), version: 1.1.2
2024-01-10T16:19:33,874   Skipping link: No binaries permitted for depht: https://files.pythonhosted.org/packages/60/d5/af28d08aaa5b708043ae39ea37550e1c81812cbc01034feedd74bbcadbfb/depht-1.1.3-py3-none-any.whl (from https://pypi.org/simple/depht/) (requires-python:>=3.6)
2024-01-10T16:19:33,875   Found link https://files.pythonhosted.org/packages/95/40/14650fc8614e79ac3b7d4e2aa431580da9f9524135d130c9d86fe6a2e9ef/depht-1.1.3.tar.gz (from https://pypi.org/simple/depht/) (requires-python:>=3.6), version: 1.1.3
2024-01-10T16:19:33,876   Skipping link: No binaries permitted for depht: https://files.pythonhosted.org/packages/5b/19/3421ba8ca682a4d1525bde02859ff605d6c91b3a8f75cb0215255a8d997f/depht-1.1.4-py3-none-any.whl (from https://pypi.org/simple/depht/) (requires-python:>=3.6)
2024-01-10T16:19:33,877   Found link https://files.pythonhosted.org/packages/ee/c8/fd81df946cb2c056b2a1486e830a93b0aed594b0eb5b8799dc8a24b0dac2/depht-1.1.4.tar.gz (from https://pypi.org/simple/depht/) (requires-python:>=3.6), version: 1.1.4
2024-01-10T16:19:33,878   Found link https://files.pythonhosted.org/packages/97/e9/2bbd3a7720ea226ccf04a701f1f05a15b6252e4b58aab2e39d3736052ad9/depht-1.1.5.tar.gz (from https://pypi.org/simple/depht/) (requires-python:>=3.8), version: 1.1.5
2024-01-10T16:19:33,879   Found link https://files.pythonhosted.org/packages/8f/25/269c779463ffbf33d44b09ce1ee82662ad9044d80ece95157376df4cad92/depht-1.1.6.tar.gz (from https://pypi.org/simple/depht/) (requires-python:>=3.8), version: 1.1.6
2024-01-10T16:19:33,879   Found link https://files.pythonhosted.org/packages/98/f4/5f9f1c4eb83b4a09bcd124182a2eea91d2eb29342fbbf7fe2c046955ea48/depht-1.1.7.tar.gz (from https://pypi.org/simple/depht/) (requires-python:>=3.8), version: 1.1.7
2024-01-10T16:19:33,880   Skipping link: No binaries permitted for depht: https://files.pythonhosted.org/packages/89/76/9f9822d20982c1b1f6c34bd2a4e1bb7009e01e078fc93e695edfb28e3ecd/depht-1.1.8-py3-none-any.whl (from https://pypi.org/simple/depht/) (requires-python:>=3.8)
2024-01-10T16:19:33,881   Found link https://files.pythonhosted.org/packages/cb/5f/37680d8e3ab9b5ff9d3e3090f6cb0940f26b4e21e9c238cdf90f5f1a3cd4/depht-1.1.8.tar.gz (from https://pypi.org/simple/depht/) (requires-python:>=3.8), version: 1.1.8
2024-01-10T16:19:33,881   Skipping link: No binaries permitted for depht: https://files.pythonhosted.org/packages/00/9a/ce86b92c1a380e0f2c3775feaf3c709a821d7dd5e20acf86fce30bf11efb/depht-1.2.0-py3-none-any.whl (from https://pypi.org/simple/depht/) (requires-python:>=3.8)
2024-01-10T16:19:33,882   Found link https://files.pythonhosted.org/packages/b0/ba/91817db56332e16164c2f39a85cf67d6c04347af82e2b020d4ca0d0a4385/depht-1.2.0.tar.gz (from https://pypi.org/simple/depht/) (requires-python:>=3.8), version: 1.2.0
2024-01-10T16:19:33,883   Skipping link: No binaries permitted for depht: https://files.pythonhosted.org/packages/6a/b3/0f21048c54d0ea2157b1f7c5e2fa1d16b5e8f06510397eaa43e47b339051/depht-1.2.1-py3-none-any.whl (from https://pypi.org/simple/depht/) (requires-python:>=3.8)
2024-01-10T16:19:33,884   Found link https://files.pythonhosted.org/packages/c3/d1/a6fffbeecdeebf614fcd2abec512ba3a03991dc6f5336546db92502ba3fd/depht-1.2.1.tar.gz (from https://pypi.org/simple/depht/) (requires-python:>=3.8), version: 1.2.1
2024-01-10T16:19:33,885   Skipping link: No binaries permitted for depht: https://files.pythonhosted.org/packages/b1/d3/14483c01eb0804093134a8a4241f662944eacdaae9df80a23c846c0a0b05/depht-1.2.2-py3-none-any.whl (from https://pypi.org/simple/depht/) (requires-python:>=3.8)
2024-01-10T16:19:33,886   Found link https://files.pythonhosted.org/packages/2e/29/609773511aaeb7bdfae7843d297dff91187b5a5ab61a2ac8340a807e5292/depht-1.2.2.tar.gz (from https://pypi.org/simple/depht/) (requires-python:>=3.8), version: 1.2.2
2024-01-10T16:19:33,886 Fetching project page and analyzing links: https://www.piwheels.org/simple/depht/
2024-01-10T16:19:33,887 Getting page https://www.piwheels.org/simple/depht/
2024-01-10T16:19:33,888 Found index url https://www.piwheels.org/simple/
2024-01-10T16:19:34,054 Fetched page https://www.piwheels.org/simple/depht/ as text/html
2024-01-10T16:19:34,059   Skipping link: No binaries permitted for depht: https://www.piwheels.org/simple/depht/depht-1.2.1-py3-none-any.whl#sha256=bb766dc2bf8635aac27006698a8373a30c92775cbb88e81c9a3d890d72a584f9 (from https://www.piwheels.org/simple/depht/) (requires-python:>=3.8)
2024-01-10T16:19:34,060   Skipping link: No binaries permitted for depht: https://www.piwheels.org/simple/depht/depht-1.2.0-py3-none-any.whl#sha256=e7c9f6710a48264f5655ca241a87cd3c7229f127b05c9536ffd1d85839dd56a3 (from https://www.piwheels.org/simple/depht/) (requires-python:>=3.8)
2024-01-10T16:19:34,060   Skipping link: No binaries permitted for depht: https://www.piwheels.org/simple/depht/depht-1.1.8-py3-none-any.whl#sha256=7e5e1c684e3e0b02030fc80cf94055c3dc4e60e1be97ab35b1473be5676acd32 (from https://www.piwheels.org/simple/depht/) (requires-python:>=3.8)
2024-01-10T16:19:34,061   Skipping link: No binaries permitted for depht: https://www.piwheels.org/simple/depht/depht-1.1.7-py3-none-any.whl#sha256=efef5acec57ac55426c7ce7a61f20b7dbd8be7840f599409ec4a2668609d3745 (from https://www.piwheels.org/simple/depht/) (requires-python:>=3.8)
2024-01-10T16:19:34,062   Skipping link: No binaries permitted for depht: https://www.piwheels.org/simple/depht/depht-1.1.6-py3-none-any.whl#sha256=f5a46b7bc13a633d0b355d1a6de508bc46e14eccd0c796a2a55921df8f1a04c0 (from https://www.piwheels.org/simple/depht/) (requires-python:>=3.8)
2024-01-10T16:19:34,062   Skipping link: No binaries permitted for depht: https://www.piwheels.org/simple/depht/depht-1.1.5-py3-none-any.whl#sha256=a3eacb5aafb5b80f2e76303fb147199323d0ba3cf9578514c79de83dd99508a2 (from https://www.piwheels.org/simple/depht/) (requires-python:>=3.8)
2024-01-10T16:19:34,062   Skipping link: No binaries permitted for depht: https://www.piwheels.org/simple/depht/depht-1.1.4-py3-none-any.whl#sha256=1f96e29acfa9f4391253289afb40f72a20f110515574983fb9779f0b8a691c2b (from https://www.piwheels.org/simple/depht/) (requires-python:>=3.6)
2024-01-10T16:19:34,063   Skipping link: No binaries permitted for depht: https://www.piwheels.org/simple/depht/depht-1.1.3-py3-none-any.whl#sha256=83a6b6a0a5348682ddc18049a490aeef6eb8a9afb32f7bb4d9f283d3d603ad88 (from https://www.piwheels.org/simple/depht/) (requires-python:>=3.6)
2024-01-10T16:19:34,063   Skipping link: No binaries permitted for depht: https://www.piwheels.org/simple/depht/depht-1.1.2-py3-none-any.whl#sha256=3483519a46f25e042f5cf9af6684ffabce759671294bc14174cfa951237458ec (from https://www.piwheels.org/simple/depht/) (requires-python:>=3.6)
2024-01-10T16:19:34,064   Skipping link: No binaries permitted for depht: https://www.piwheels.org/simple/depht/depht-1.1.1-py3-none-any.whl#sha256=7a317fc77958224a59cf68ead901529121d9d2b51e9857531a1804cf02652711 (from https://www.piwheels.org/simple/depht/) (requires-python:>=3.6)
2024-01-10T16:19:34,065   Skipping link: No binaries permitted for depht: https://www.piwheels.org/simple/depht/depht-1.0.2-py3-none-any.whl#sha256=e40087e26a118911beeba973a589afb546a8905bce3927348015d3b5ecb30fc4 (from https://www.piwheels.org/simple/depht/) (requires-python:>=3.6)
2024-01-10T16:19:34,065   Skipping link: No binaries permitted for depht: https://www.piwheels.org/simple/depht/depht-1.0.1-py3-none-any.whl#sha256=6ce913764fa0fbd66aca333bfaee4b8ba291318ddf7d12eb333ee775bb6399cb (from https://www.piwheels.org/simple/depht/) (requires-python:>=3.6)
2024-01-10T16:19:34,066   Skipping link: No binaries permitted for depht: https://www.piwheels.org/simple/depht/depht-1.0.0-py3-none-any.whl#sha256=295b3534c03d4d33691ed03b9aaa1769cce7c3dfd049472609861851d5147697 (from https://www.piwheels.org/simple/depht/) (requires-python:>=3.6)
2024-01-10T16:19:34,067 Skipping link: not a file: https://www.piwheels.org/simple/depht/
2024-01-10T16:19:34,067 Skipping link: not a file: https://pypi.org/simple/depht/
2024-01-10T16:19:34,088 Given no hashes to check 1 links for project 'depht': discarding no candidates
2024-01-10T16:19:34,108 Collecting depht==1.2.2
2024-01-10T16:19:34,110   Created temporary directory: /tmp/pip-unpack-4ndt5x12
2024-01-10T16:19:34,321   Downloading depht-1.2.2.tar.gz (91 kB)
2024-01-10T16:19:34,511   Added depht==1.2.2 from https://files.pythonhosted.org/packages/2e/29/609773511aaeb7bdfae7843d297dff91187b5a5ab61a2ac8340a807e5292/depht-1.2.2.tar.gz to build tracker '/tmp/pip-build-tracker-_2vbqg4m'
2024-01-10T16:19:34,515   Created temporary directory: /tmp/pip-build-env-7cabc3jr
2024-01-10T16:19:34,520   Installing build dependencies: started
2024-01-10T16:19:34,521   Running command pip subprocess to install build dependencies
2024-01-10T16:19:35,678   Using pip 23.3.1 from /home/piwheels/.local/lib/python3.11/site-packages/pip (python 3.11)
2024-01-10T16:19:36,232   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-01-10T16:19:37,648   Collecting setuptools
2024-01-10T16:19:37,664     Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.0.3-py3-none-any.whl (819 kB)
2024-01-10T16:19:37,881   Collecting wheel
2024-01-10T16:19:37,894     Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB)
2024-01-10T16:19:40,614   Installing collected packages: wheel, setuptools
2024-01-10T16:19:40,842     Creating /tmp/pip-build-env-7cabc3jr/overlay/local/bin
2024-01-10T16:19:40,844     changing mode of /tmp/pip-build-env-7cabc3jr/overlay/local/bin/wheel to 755
2024-01-10T16:19:43,032   Successfully installed setuptools-69.0.3 wheel-0.42.0

2024-01-10T16:19:43,295   [notice] A new release of pip is available: 23.3.1 -> 23.3.2
2024-01-10T16:19:43,295   [notice] To update, run: python3 -m pip install --upgrade pip
2024-01-10T16:19:43,564   Installing build dependencies: finished with status 'done'
2024-01-10T16:19:43,568   Getting requirements to build wheel: started
2024-01-10T16:19:43,569   Running command Getting requirements to build wheel
2024-01-10T16:19:44,157   running egg_info
2024-01-10T16:19:44,161   writing src/depht.egg-info/PKG-INFO
2024-01-10T16:19:44,165   writing dependency_links to src/depht.egg-info/dependency_links.txt
2024-01-10T16:19:44,167   writing entry points to src/depht.egg-info/entry_points.txt
2024-01-10T16:19:44,169   writing requirements to src/depht.egg-info/requires.txt
2024-01-10T16:19:44,170   writing top-level names to src/depht.egg-info/top_level.txt
2024-01-10T16:19:44,198   reading manifest file 'src/depht.egg-info/SOURCES.txt'
2024-01-10T16:19:44,205   writing manifest file 'src/depht.egg-info/SOURCES.txt'
2024-01-10T16:19:44,286   Getting requirements to build wheel: finished with status 'done'
2024-01-10T16:19:44,296   Created temporary directory: /tmp/pip-modern-metadata-in2kit6g
2024-01-10T16:19:44,299   Preparing metadata (pyproject.toml): started
2024-01-10T16:19:44,300   Running command Preparing metadata (pyproject.toml)
2024-01-10T16:19:44,802   running dist_info
2024-01-10T16:19:44,820   creating /tmp/pip-modern-metadata-in2kit6g/depht.egg-info
2024-01-10T16:19:44,824   writing /tmp/pip-modern-metadata-in2kit6g/depht.egg-info/PKG-INFO
2024-01-10T16:19:44,829   writing dependency_links to /tmp/pip-modern-metadata-in2kit6g/depht.egg-info/dependency_links.txt
2024-01-10T16:19:44,830   writing entry points to /tmp/pip-modern-metadata-in2kit6g/depht.egg-info/entry_points.txt
2024-01-10T16:19:44,832   writing requirements to /tmp/pip-modern-metadata-in2kit6g/depht.egg-info/requires.txt
2024-01-10T16:19:44,833   writing top-level names to /tmp/pip-modern-metadata-in2kit6g/depht.egg-info/top_level.txt
2024-01-10T16:19:44,834   writing manifest file '/tmp/pip-modern-metadata-in2kit6g/depht.egg-info/SOURCES.txt'
2024-01-10T16:19:44,856   reading manifest file '/tmp/pip-modern-metadata-in2kit6g/depht.egg-info/SOURCES.txt'
2024-01-10T16:19:44,860   writing manifest file '/tmp/pip-modern-metadata-in2kit6g/depht.egg-info/SOURCES.txt'
2024-01-10T16:19:44,861   creating '/tmp/pip-modern-metadata-in2kit6g/depht-1.2.2.dist-info'
2024-01-10T16:19:45,049   Preparing metadata (pyproject.toml): finished with status 'done'
2024-01-10T16:19:45,054   Source in /tmp/pip-wheel-7_6ibzpz/depht_09bf924fde9e4ecbbeeae300e3151753 has version 1.2.2, which satisfies requirement depht==1.2.2 from https://files.pythonhosted.org/packages/2e/29/609773511aaeb7bdfae7843d297dff91187b5a5ab61a2ac8340a807e5292/depht-1.2.2.tar.gz
2024-01-10T16:19:45,055   Removed depht==1.2.2 from https://files.pythonhosted.org/packages/2e/29/609773511aaeb7bdfae7843d297dff91187b5a5ab61a2ac8340a807e5292/depht-1.2.2.tar.gz from build tracker '/tmp/pip-build-tracker-_2vbqg4m'
2024-01-10T16:19:45,063 Created temporary directory: /tmp/pip-unpack-2pm1o3_7
2024-01-10T16:19:45,064 Created temporary directory: /tmp/pip-unpack-x5zrpblj
2024-01-10T16:19:45,082 Building wheels for collected packages: depht
2024-01-10T16:19:45,088   Created temporary directory: /tmp/pip-wheel-fxw3shg6
2024-01-10T16:19:45,088   Destination directory: /tmp/pip-wheel-fxw3shg6
2024-01-10T16:19:45,090   Building wheel for depht (pyproject.toml): started
2024-01-10T16:19:45,091   Running command Building wheel for depht (pyproject.toml)
2024-01-10T16:19:45,654   running bdist_wheel
2024-01-10T16:19:45,695   running build
2024-01-10T16:19:45,696   running build_py
2024-01-10T16:19:45,703   creating build
2024-01-10T16:19:45,704   creating build/lib
2024-01-10T16:19:45,704   creating build/lib/depht_train
2024-01-10T16:19:45,705   copying src/depht_train/run.py -> build/lib/depht_train
2024-01-10T16:19:45,707   copying src/depht_train/__init__.py -> build/lib/depht_train
2024-01-10T16:19:45,709   copying src/depht_train/data.py -> build/lib/depht_train
2024-01-10T16:19:45,711   copying src/depht_train/__main__.py -> build/lib/depht_train
2024-01-10T16:19:45,713   creating build/lib/depht
2024-01-10T16:19:45,713   copying src/depht/__init__.py -> build/lib/depht
2024-01-10T16:19:45,715   copying src/depht/data.py -> build/lib/depht
2024-01-10T16:19:45,717   copying src/depht/__main__.py -> build/lib/depht
2024-01-10T16:19:45,719   copying src/depht/fetch_model.py -> build/lib/depht
2024-01-10T16:19:45,721   creating build/lib/depht_train/functions
2024-01-10T16:19:45,722   copying src/depht_train/functions/blastdb.py -> build/lib/depht_train/functions
2024-01-10T16:19:45,724   copying src/depht_train/functions/__init__.py -> build/lib/depht_train/functions
2024-01-10T16:19:45,725   copying src/depht_train/functions/config_handling.py -> build/lib/depht_train/functions
2024-01-10T16:19:45,727   copying src/depht_train/functions/entrez.py -> build/lib/depht_train/functions
2024-01-10T16:19:45,729   copying src/depht_train/functions/fileio.py -> build/lib/depht_train/functions
2024-01-10T16:19:45,730   copying src/depht_train/functions/hhsuitedb.py -> build/lib/depht_train/functions
2024-01-10T16:19:45,733   copying src/depht_train/functions/clustalo.py -> build/lib/depht_train/functions
2024-01-10T16:19:45,734   copying src/depht_train/functions/train_classifier.py -> build/lib/depht_train/functions
2024-01-10T16:19:45,737   creating build/lib/depht_train/pipelines
2024-01-10T16:19:45,738   copying src/depht_train/pipelines/build_HMM_db.py -> build/lib/depht_train/pipelines
2024-01-10T16:19:45,740   copying src/depht_train/pipelines/phamerate.py -> build/lib/depht_train/pipelines
2024-01-10T16:19:45,742   copying src/depht_train/pipelines/build_reference_db.py -> build/lib/depht_train/pipelines
2024-01-10T16:19:45,744   copying src/depht_train/pipelines/plot_gene_density.py -> build/lib/depht_train/pipelines
2024-01-10T16:19:45,746   copying src/depht_train/pipelines/curate_gene_clusters.py -> build/lib/depht_train/pipelines
2024-01-10T16:19:45,748   copying src/depht_train/pipelines/screen_conserved_phams.py -> build/lib/depht_train/pipelines
2024-01-10T16:19:45,750   copying src/depht_train/pipelines/__init__.py -> build/lib/depht_train/pipelines
2024-01-10T16:19:45,752   copying src/depht_train/pipelines/benchmark_output.py -> build/lib/depht_train/pipelines
2024-01-10T16:19:45,754   copying src/depht_train/pipelines/create_model.py -> build/lib/depht_train/pipelines
2024-01-10T16:19:45,756   copying src/depht_train/pipelines/index_sequences.py -> build/lib/depht_train/pipelines
2024-01-10T16:19:45,758   copying src/depht_train/pipelines/train_model.py -> build/lib/depht_train/pipelines
2024-01-10T16:19:45,761   copying src/depht_train/pipelines/recut_fasta.py -> build/lib/depht_train/pipelines
2024-01-10T16:19:45,762   copying src/depht_train/pipelines/pull_sequences.py -> build/lib/depht_train/pipelines
2024-01-10T16:19:45,764   creating build/lib/depht_train/classes
2024-01-10T16:19:45,765   copying src/depht_train/classes/__init__.py -> build/lib/depht_train/classes
2024-01-10T16:19:45,767   copying src/depht_train/classes/kfold.py -> build/lib/depht_train/classes
2024-01-10T16:19:45,769   copying src/depht_train/classes/database.py -> build/lib/depht_train/classes
2024-01-10T16:19:45,771   creating build/lib/depht/functions
2024-01-10T16:19:45,772   copying src/depht/functions/sliding_window.py -> build/lib/depht/functions
2024-01-10T16:19:45,774   copying src/depht/functions/__init__.py -> build/lib/depht/functions
2024-01-10T16:19:45,775   copying src/depht/functions/multiprocess.py -> build/lib/depht/functions
2024-01-10T16:19:45,777   copying src/depht/functions/subprocess.py -> build/lib/depht/functions
2024-01-10T16:19:45,778   copying src/depht/functions/prophage_prediction.py -> build/lib/depht/functions
2024-01-10T16:19:45,780   copying src/depht/functions/statistics.py -> build/lib/depht/functions
2024-01-10T16:19:45,782   copying src/depht/functions/blastn.py -> build/lib/depht/functions
2024-01-10T16:19:45,784   copying src/depht/functions/find_homologs.py -> build/lib/depht/functions
2024-01-10T16:19:45,786   copying src/depht/functions/att.py -> build/lib/depht/functions
2024-01-10T16:19:45,788   copying src/depht/functions/visualization.py -> build/lib/depht/functions
2024-01-10T16:19:45,790   copying src/depht/functions/annotation.py -> build/lib/depht/functions
2024-01-10T16:19:45,792   copying src/depht/functions/fasta.py -> build/lib/depht/functions
2024-01-10T16:19:45,794   copying src/depht/functions/sniff_format.py -> build/lib/depht/functions
2024-01-10T16:19:45,795   copying src/depht/functions/mmseqs.py -> build/lib/depht/functions
2024-01-10T16:19:45,798   creating build/lib/depht/classes
2024-01-10T16:19:45,799   copying src/depht/classes/hhresult.py -> build/lib/depht/classes
2024-01-10T16:19:45,802   copying src/depht/classes/prophage_classifier.py -> build/lib/depht/classes
2024-01-10T16:19:45,804   copying src/depht/classes/__init__.py -> build/lib/depht/classes
2024-01-10T16:19:45,805   copying src/depht/classes/contig.py -> build/lib/depht/classes
2024-01-10T16:19:45,807   copying src/depht/classes/prophage.py -> build/lib/depht/classes
2024-01-10T16:19:45,809   copying src/depht/classes/progress.py -> build/lib/depht/classes
2024-01-10T16:19:45,810   copying src/depht/classes/file_translator.py -> build/lib/depht/classes
2024-01-10T16:19:45,829   installing to build/bdist.linux-armv7l/wheel
2024-01-10T16:19:45,829   running install
2024-01-10T16:19:45,853   running install_lib
2024-01-10T16:19:45,859   creating build/bdist.linux-armv7l
2024-01-10T16:19:45,859   creating build/bdist.linux-armv7l/wheel
2024-01-10T16:19:45,861   creating build/bdist.linux-armv7l/wheel/depht_train
2024-01-10T16:19:45,862   copying build/lib/depht_train/run.py -> build/bdist.linux-armv7l/wheel/depht_train
2024-01-10T16:19:45,864   copying build/lib/depht_train/__init__.py -> build/bdist.linux-armv7l/wheel/depht_train
2024-01-10T16:19:45,865   copying build/lib/depht_train/data.py -> build/bdist.linux-armv7l/wheel/depht_train
2024-01-10T16:19:45,867   copying build/lib/depht_train/__main__.py -> build/bdist.linux-armv7l/wheel/depht_train
2024-01-10T16:19:45,869   creating build/bdist.linux-armv7l/wheel/depht_train/functions
2024-01-10T16:19:45,870   copying build/lib/depht_train/functions/blastdb.py -> build/bdist.linux-armv7l/wheel/depht_train/functions
2024-01-10T16:19:45,872   copying build/lib/depht_train/functions/__init__.py -> build/bdist.linux-armv7l/wheel/depht_train/functions
2024-01-10T16:19:45,873   copying build/lib/depht_train/functions/config_handling.py -> build/bdist.linux-armv7l/wheel/depht_train/functions
2024-01-10T16:19:45,875   copying build/lib/depht_train/functions/entrez.py -> build/bdist.linux-armv7l/wheel/depht_train/functions
2024-01-10T16:19:45,877   copying build/lib/depht_train/functions/fileio.py -> build/bdist.linux-armv7l/wheel/depht_train/functions
2024-01-10T16:19:45,879   copying build/lib/depht_train/functions/hhsuitedb.py -> build/bdist.linux-armv7l/wheel/depht_train/functions
2024-01-10T16:19:45,881   copying build/lib/depht_train/functions/clustalo.py -> build/bdist.linux-armv7l/wheel/depht_train/functions
2024-01-10T16:19:45,883   copying build/lib/depht_train/functions/train_classifier.py -> build/bdist.linux-armv7l/wheel/depht_train/functions
2024-01-10T16:19:45,886   creating build/bdist.linux-armv7l/wheel/depht_train/pipelines
2024-01-10T16:19:45,887   copying build/lib/depht_train/pipelines/build_HMM_db.py -> build/bdist.linux-armv7l/wheel/depht_train/pipelines
2024-01-10T16:19:45,889   copying build/lib/depht_train/pipelines/phamerate.py -> build/bdist.linux-armv7l/wheel/depht_train/pipelines
2024-01-10T16:19:45,891   copying build/lib/depht_train/pipelines/build_reference_db.py -> build/bdist.linux-armv7l/wheel/depht_train/pipelines
2024-01-10T16:19:45,892   copying build/lib/depht_train/pipelines/plot_gene_density.py -> build/bdist.linux-armv7l/wheel/depht_train/pipelines
2024-01-10T16:19:45,895   copying build/lib/depht_train/pipelines/curate_gene_clusters.py -> build/bdist.linux-armv7l/wheel/depht_train/pipelines
2024-01-10T16:19:45,897   copying build/lib/depht_train/pipelines/screen_conserved_phams.py -> build/bdist.linux-armv7l/wheel/depht_train/pipelines
2024-01-10T16:19:45,899   copying build/lib/depht_train/pipelines/__init__.py -> build/bdist.linux-armv7l/wheel/depht_train/pipelines
2024-01-10T16:19:45,900   copying build/lib/depht_train/pipelines/benchmark_output.py -> build/bdist.linux-armv7l/wheel/depht_train/pipelines
2024-01-10T16:19:45,903   copying build/lib/depht_train/pipelines/create_model.py -> build/bdist.linux-armv7l/wheel/depht_train/pipelines
2024-01-10T16:19:45,905   copying build/lib/depht_train/pipelines/index_sequences.py -> build/bdist.linux-armv7l/wheel/depht_train/pipelines
2024-01-10T16:19:45,907   copying build/lib/depht_train/pipelines/train_model.py -> build/bdist.linux-armv7l/wheel/depht_train/pipelines
2024-01-10T16:19:45,909   copying build/lib/depht_train/pipelines/recut_fasta.py -> build/bdist.linux-armv7l/wheel/depht_train/pipelines
2024-01-10T16:19:45,911   copying build/lib/depht_train/pipelines/pull_sequences.py -> build/bdist.linux-armv7l/wheel/depht_train/pipelines
2024-01-10T16:19:45,913   creating build/bdist.linux-armv7l/wheel/depht_train/classes
2024-01-10T16:19:45,913   copying build/lib/depht_train/classes/__init__.py -> build/bdist.linux-armv7l/wheel/depht_train/classes
2024-01-10T16:19:45,915   copying build/lib/depht_train/classes/kfold.py -> build/bdist.linux-armv7l/wheel/depht_train/classes
2024-01-10T16:19:45,917   copying build/lib/depht_train/classes/database.py -> build/bdist.linux-armv7l/wheel/depht_train/classes
2024-01-10T16:19:45,919   creating build/bdist.linux-armv7l/wheel/depht
2024-01-10T16:19:45,920   copying build/lib/depht/__init__.py -> build/bdist.linux-armv7l/wheel/depht
2024-01-10T16:19:45,922   copying build/lib/depht/data.py -> build/bdist.linux-armv7l/wheel/depht
2024-01-10T16:19:45,923   copying build/lib/depht/__main__.py -> build/bdist.linux-armv7l/wheel/depht
2024-01-10T16:19:45,926   creating build/bdist.linux-armv7l/wheel/depht/functions
2024-01-10T16:19:45,927   copying build/lib/depht/functions/sliding_window.py -> build/bdist.linux-armv7l/wheel/depht/functions
2024-01-10T16:19:45,929   copying build/lib/depht/functions/__init__.py -> build/bdist.linux-armv7l/wheel/depht/functions
2024-01-10T16:19:45,931   copying build/lib/depht/functions/multiprocess.py -> build/bdist.linux-armv7l/wheel/depht/functions
2024-01-10T16:19:45,933   copying build/lib/depht/functions/subprocess.py -> build/bdist.linux-armv7l/wheel/depht/functions
2024-01-10T16:19:45,934   copying build/lib/depht/functions/prophage_prediction.py -> build/bdist.linux-armv7l/wheel/depht/functions
2024-01-10T16:19:45,936   copying build/lib/depht/functions/statistics.py -> build/bdist.linux-armv7l/wheel/depht/functions
2024-01-10T16:19:45,938   copying build/lib/depht/functions/blastn.py -> build/bdist.linux-armv7l/wheel/depht/functions
2024-01-10T16:19:45,940   copying build/lib/depht/functions/find_homologs.py -> build/bdist.linux-armv7l/wheel/depht/functions
2024-01-10T16:19:45,942   copying build/lib/depht/functions/att.py -> build/bdist.linux-armv7l/wheel/depht/functions
2024-01-10T16:19:45,945   copying build/lib/depht/functions/visualization.py -> build/bdist.linux-armv7l/wheel/depht/functions
2024-01-10T16:19:45,947   copying build/lib/depht/functions/annotation.py -> build/bdist.linux-armv7l/wheel/depht/functions
2024-01-10T16:19:45,949   copying build/lib/depht/functions/fasta.py -> build/bdist.linux-armv7l/wheel/depht/functions
2024-01-10T16:19:45,951   copying build/lib/depht/functions/sniff_format.py -> build/bdist.linux-armv7l/wheel/depht/functions
2024-01-10T16:19:45,953   copying build/lib/depht/functions/mmseqs.py -> build/bdist.linux-armv7l/wheel/depht/functions
2024-01-10T16:19:45,955   creating build/bdist.linux-armv7l/wheel/depht/classes
2024-01-10T16:19:45,956   copying build/lib/depht/classes/hhresult.py -> build/bdist.linux-armv7l/wheel/depht/classes
2024-01-10T16:19:45,959   copying build/lib/depht/classes/prophage_classifier.py -> build/bdist.linux-armv7l/wheel/depht/classes
2024-01-10T16:19:45,961   copying build/lib/depht/classes/__init__.py -> build/bdist.linux-armv7l/wheel/depht/classes
2024-01-10T16:19:45,962   copying build/lib/depht/classes/contig.py -> build/bdist.linux-armv7l/wheel/depht/classes
2024-01-10T16:19:45,964   copying build/lib/depht/classes/prophage.py -> build/bdist.linux-armv7l/wheel/depht/classes
2024-01-10T16:19:45,966   copying build/lib/depht/classes/progress.py -> build/bdist.linux-armv7l/wheel/depht/classes
2024-01-10T16:19:45,967   copying build/lib/depht/classes/file_translator.py -> build/bdist.linux-armv7l/wheel/depht/classes
2024-01-10T16:19:45,969   copying build/lib/depht/fetch_model.py -> build/bdist.linux-armv7l/wheel/depht
2024-01-10T16:19:45,971   running install_egg_info
2024-01-10T16:19:45,981   running egg_info
2024-01-10T16:19:45,984   writing src/depht.egg-info/PKG-INFO
2024-01-10T16:19:45,988   writing dependency_links to src/depht.egg-info/dependency_links.txt
2024-01-10T16:19:45,989   writing entry points to src/depht.egg-info/entry_points.txt
2024-01-10T16:19:45,991   writing requirements to src/depht.egg-info/requires.txt
2024-01-10T16:19:45,992   writing top-level names to src/depht.egg-info/top_level.txt
2024-01-10T16:19:46,004   reading manifest file 'src/depht.egg-info/SOURCES.txt'
2024-01-10T16:19:46,010   writing manifest file 'src/depht.egg-info/SOURCES.txt'
2024-01-10T16:19:46,011   Copying src/depht.egg-info to build/bdist.linux-armv7l/wheel/depht-1.2.2-py3.11.egg-info
2024-01-10T16:19:46,022   running install_scripts
2024-01-10T16:19:46,040   creating build/bdist.linux-armv7l/wheel/depht-1.2.2.dist-info/WHEEL
2024-01-10T16:19:46,042   creating '/tmp/pip-wheel-fxw3shg6/.tmp-u0jpbf41/depht-1.2.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-01-10T16:19:46,044   adding 'depht/__init__.py'
2024-01-10T16:19:46,047   adding 'depht/__main__.py'
2024-01-10T16:19:46,049   adding 'depht/data.py'
2024-01-10T16:19:46,050   adding 'depht/fetch_model.py'
2024-01-10T16:19:46,052   adding 'depht/classes/__init__.py'
2024-01-10T16:19:46,053   adding 'depht/classes/contig.py'
2024-01-10T16:19:46,055   adding 'depht/classes/file_translator.py'
2024-01-10T16:19:46,057   adding 'depht/classes/hhresult.py'
2024-01-10T16:19:46,059   adding 'depht/classes/progress.py'
2024-01-10T16:19:46,060   adding 'depht/classes/prophage.py'
2024-01-10T16:19:46,062   adding 'depht/classes/prophage_classifier.py'
2024-01-10T16:19:46,064   adding 'depht/functions/__init__.py'
2024-01-10T16:19:46,065   adding 'depht/functions/annotation.py'
2024-01-10T16:19:46,068   adding 'depht/functions/att.py'
2024-01-10T16:19:46,069   adding 'depht/functions/blastn.py'
2024-01-10T16:19:46,071   adding 'depht/functions/fasta.py'
2024-01-10T16:19:46,072   adding 'depht/functions/find_homologs.py'
2024-01-10T16:19:46,075   adding 'depht/functions/mmseqs.py'
2024-01-10T16:19:46,076   adding 'depht/functions/multiprocess.py'
2024-01-10T16:19:46,078   adding 'depht/functions/prophage_prediction.py'
2024-01-10T16:19:46,079   adding 'depht/functions/sliding_window.py'
2024-01-10T16:19:46,081   adding 'depht/functions/sniff_format.py'
2024-01-10T16:19:46,082   adding 'depht/functions/statistics.py'
2024-01-10T16:19:46,083   adding 'depht/functions/subprocess.py'
2024-01-10T16:19:46,085   adding 'depht/functions/visualization.py'
2024-01-10T16:19:46,088   adding 'depht_train/__init__.py'
2024-01-10T16:19:46,089   adding 'depht_train/__main__.py'
2024-01-10T16:19:46,090   adding 'depht_train/data.py'
2024-01-10T16:19:46,091   adding 'depht_train/run.py'
2024-01-10T16:19:46,093   adding 'depht_train/classes/__init__.py'
2024-01-10T16:19:46,094   adding 'depht_train/classes/database.py'
2024-01-10T16:19:46,095   adding 'depht_train/classes/kfold.py'
2024-01-10T16:19:46,097   adding 'depht_train/functions/__init__.py'
2024-01-10T16:19:46,098   adding 'depht_train/functions/blastdb.py'
2024-01-10T16:19:46,099   adding 'depht_train/functions/clustalo.py'
2024-01-10T16:19:46,100   adding 'depht_train/functions/config_handling.py'
2024-01-10T16:19:46,102   adding 'depht_train/functions/entrez.py'
2024-01-10T16:19:46,103   adding 'depht_train/functions/fileio.py'
2024-01-10T16:19:46,105   adding 'depht_train/functions/hhsuitedb.py'
2024-01-10T16:19:46,107   adding 'depht_train/functions/train_classifier.py'
2024-01-10T16:19:46,108   adding 'depht_train/pipelines/__init__.py'
2024-01-10T16:19:46,110   adding 'depht_train/pipelines/benchmark_output.py'
2024-01-10T16:19:46,111   adding 'depht_train/pipelines/build_HMM_db.py'
2024-01-10T16:19:46,113   adding 'depht_train/pipelines/build_reference_db.py'
2024-01-10T16:19:46,115   adding 'depht_train/pipelines/create_model.py'
2024-01-10T16:19:46,117   adding 'depht_train/pipelines/curate_gene_clusters.py'
2024-01-10T16:19:46,118   adding 'depht_train/pipelines/index_sequences.py'
2024-01-10T16:19:46,120   adding 'depht_train/pipelines/phamerate.py'
2024-01-10T16:19:46,121   adding 'depht_train/pipelines/plot_gene_density.py'
2024-01-10T16:19:46,123   adding 'depht_train/pipelines/pull_sequences.py'
2024-01-10T16:19:46,124   adding 'depht_train/pipelines/recut_fasta.py'
2024-01-10T16:19:46,126   adding 'depht_train/pipelines/screen_conserved_phams.py'
2024-01-10T16:19:46,127   adding 'depht_train/pipelines/train_model.py'
2024-01-10T16:19:46,131   adding 'depht-1.2.2.dist-info/METADATA'
2024-01-10T16:19:46,132   adding 'depht-1.2.2.dist-info/WHEEL'
2024-01-10T16:19:46,133   adding 'depht-1.2.2.dist-info/entry_points.txt'
2024-01-10T16:19:46,134   adding 'depht-1.2.2.dist-info/top_level.txt'
2024-01-10T16:19:46,135   adding 'depht-1.2.2.dist-info/RECORD'
2024-01-10T16:19:46,138   removing build/bdist.linux-armv7l/wheel
2024-01-10T16:19:46,241   Building wheel for depht (pyproject.toml): finished with status 'done'
2024-01-10T16:19:46,249   Created wheel for depht: filename=depht-1.2.2-py3-none-any.whl size=101660 sha256=0740bbc31a368bc4ff34698c67455feee4696ea8d24fb329bbf58ef3e83d3603
2024-01-10T16:19:46,250   Stored in directory: /tmp/pip-ephem-wheel-cache-gmx2qzds/wheels/15/8c/f2/6bef5fc7f96ea97ef82261cf1885e77d71dcef63e389f41b8c
2024-01-10T16:19:46,264 Successfully built depht
2024-01-10T16:19:46,271 Removed build tracker: '/tmp/pip-build-tracker-_2vbqg4m'