2024-01-11T19:58:24,419 Created temporary directory: /tmp/pip-build-tracker-onm3d4e_ 2024-01-11T19:58:24,420 Initialized build tracking at /tmp/pip-build-tracker-onm3d4e_ 2024-01-11T19:58:24,421 Created build tracker: /tmp/pip-build-tracker-onm3d4e_ 2024-01-11T19:58:24,421 Entered build tracker: /tmp/pip-build-tracker-onm3d4e_ 2024-01-11T19:58:24,422 Created temporary directory: /tmp/pip-wheel-w339cf_w 2024-01-11T19:58:24,425 Created temporary directory: /tmp/pip-ephem-wheel-cache-4jd6nccb 2024-01-11T19:58:24,447 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-11T19:58:24,450 2 location(s) to search for versions of pyft: 2024-01-11T19:58:24,450 * https://pypi.org/simple/pyft/ 2024-01-11T19:58:24,450 * https://www.piwheels.org/simple/pyft/ 2024-01-11T19:58:24,451 Fetching project page and analyzing links: https://pypi.org/simple/pyft/ 2024-01-11T19:58:24,452 Getting page https://pypi.org/simple/pyft/ 2024-01-11T19:58:24,453 Found index url https://pypi.org/simple/ 2024-01-11T19:58:24,664 Fetched page https://pypi.org/simple/pyft/ as application/vnd.pypi.simple.v1+json 2024-01-11T19:58:24,670 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/d7/62/f180b758be35243ef8a74361f533c974f7294541f16c9bc82cdcc29983e0/pyft-0.1.0-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2024-01-11T19:58:24,671 Found link https://files.pythonhosted.org/packages/c5/b3/4729bed033d7a353ec71381fa9e1ade1bf7a186a837ed3627b31265ddede/pyft-0.1.0.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.0 2024-01-11T19:58:24,671 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/cb/27/9e42da52a20d9b691ef37a8828764cd904af507b9107a386d55614566304/pyft-0.1.1-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2024-01-11T19:58:24,672 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/42/ec/1bf1615986fee7e2940dcd8902ef14457658d94208b01d95549253b62843/pyft-0.1.2-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2024-01-11T19:58:24,673 Found link https://files.pythonhosted.org/packages/0a/0b/139d65d937bc185b68d3eff484ce5c3ca5e3bfc3150b2020d0b604b64d66/pyft-0.1.2.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.2 2024-01-11T19:58:24,673 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/04/9b/b53f6e949dabc348f4bf60f9d11a473764e589d6041be074cbcf20a42900/pyft-0.1.3-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2024-01-11T19:58:24,674 Found link https://files.pythonhosted.org/packages/ab/26/5c78ed72341a5f6b18d9f84a1e9bc91739519c613d9051f732bf902f363d/pyft-0.1.3.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.3 2024-01-11T19:58:24,675 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/5f/76/cfcbbab37550bc51a7e8ea1bc59451ae618fb3eab2f20f7aa097bc615268/pyft-0.1.4-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2024-01-11T19:58:24,676 Found link https://files.pythonhosted.org/packages/c0/f0/c6f569449c4bbc95ba0281b2423d2c22fd957a7279f33b74ebd6aa94fefb/pyft-0.1.4.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.4 2024-01-11T19:58:24,677 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/b3/d8/e0bcc1d4dda64ccb39a697d7a2cf2f0afc1edddea2f97aa3b7351ada002d/pyft-0.1.5-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2024-01-11T19:58:24,678 Found link https://files.pythonhosted.org/packages/02/93/e6e05f3380af83b5c4b010925934d31dba5527b59d0f256aef8bd6b6b0d1/pyft-0.1.5.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.5 2024-01-11T19:58:24,678 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/7f/54/78d366d8c40d15e7e6ea673715003e9d3a1799bec389136fd3646cd2ee41/pyft-0.1.6-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2024-01-11T19:58:24,679 Found link https://files.pythonhosted.org/packages/a3/a5/862a667ea22060468fbb9a217ce8d25c4eda9ff6c64b79f5887e7d4123be/pyft-0.1.6.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.6 2024-01-11T19:58:24,680 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/ba/62/742233e64de296bde6230c31c8ac312c38ca40fa09f10cb36f8c3da3ba1b/pyft-0.1.7-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2024-01-11T19:58:24,681 Found link https://files.pythonhosted.org/packages/26/f9/bfc6b3b66cd901649cf13ea23361c69321e46ed3b1fe73981863371c14ea/pyft-0.1.7.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.7 2024-01-11T19:58:24,681 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/0b/b9/8bdacd074d2a6f38e3c2c3508cb1ddd1d1c00963e365f44c979bbd8c4df0/pyft-0.1.8-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2024-01-11T19:58:24,682 Found link https://files.pythonhosted.org/packages/ce/e7/c55525cdea4a7421cd6f08f16b85d094a3f95578f8d410ae6849e20ae1aa/pyft-0.1.8.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.8 2024-01-11T19:58:24,683 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/aa/81/12871893127d02cf1d8ad68c808878816523e038fbd8fc69ef390b2d3069/pyft-0.1.9-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2024-01-11T19:58:24,683 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/3a/6b/de60870d8a72ea0dd422eb38f9649692556599868f50cd8a62d5ce0c5e0c/pyft-0.1.9-cp39-cp39-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2024-01-11T19:58:24,684 Found link https://files.pythonhosted.org/packages/1e/7e/215d26ce7f6964e59e74252153d7c41d6ffa58f372bc2180bf9365f86a70/pyft-0.1.9.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.9 2024-01-11T19:58:24,685 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/98/34/486e083204140b4ee99d4eb669ffe4f9a52fe8a9fd0365a00b22d171b095/pyft-0.1.10-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2024-01-11T19:58:24,685 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/d0/9b/3f564e58355225004d47f2f0e666fbcf193520327cf208b7035d08228af2/pyft-0.1.10-cp39-cp39-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2024-01-11T19:58:24,686 Found link https://files.pythonhosted.org/packages/b7/e9/85ad227a8e926f6f737e40243d9c7e74aabefb51808874b8b1b61a3582ef/pyft-0.1.10.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.10 2024-01-11T19:58:24,687 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/b9/06/a0c265c3680e44912f4d34fb2fee4307042417f75fb23b50d34f2d4e23ca/pyft-0.1.11-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2024-01-11T19:58:24,687 Found link https://files.pythonhosted.org/packages/92/b0/bd729b1b3e99a2214e432386dd52d9d717b5559e8c95e1d4367ad0e10b19/pyft-0.1.11.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.11 2024-01-11T19:58:24,688 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyft/ 2024-01-11T19:58:24,689 Getting page https://www.piwheels.org/simple/pyft/ 2024-01-11T19:58:24,690 Found index url https://www.piwheels.org/simple/ 2024-01-11T19:58:24,854 Fetched page https://www.piwheels.org/simple/pyft/ as text/html 2024-01-11T19:58:24,855 Skipping link: not a file: https://www.piwheels.org/simple/pyft/ 2024-01-11T19:58:24,857 Skipping link: not a file: https://pypi.org/simple/pyft/ 2024-01-11T19:58:24,877 Given no hashes to check 1 links for project 'pyft': discarding no candidates 2024-01-11T19:58:24,895 Collecting pyft==0.1.11 2024-01-11T19:58:24,897 Created temporary directory: /tmp/pip-unpack-fpr6rjmt 2024-01-11T19:58:25,110 Downloading pyft-0.1.11.tar.gz (8.5 MB) 2024-01-11T19:58:32,198 Added pyft==0.1.11 from https://files.pythonhosted.org/packages/92/b0/bd729b1b3e99a2214e432386dd52d9d717b5559e8c95e1d4367ad0e10b19/pyft-0.1.11.tar.gz to build tracker '/tmp/pip-build-tracker-onm3d4e_' 2024-01-11T19:58:32,202 Created temporary directory: /tmp/pip-build-env-xo5rdqqh 2024-01-11T19:58:32,207 Installing build dependencies: started 2024-01-11T19:58:32,208 Running command pip subprocess to install build dependencies 2024-01-11T19:58:33,350 Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-01-11T19:58:33,875 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-11T19:58:34,952 Collecting maturin<2.0,>=1.1 2024-01-11T19:58:34,967 Using cached https://www.piwheels.org/simple/maturin/maturin-1.4.0-cp311-cp311-linux_armv7l.whl (6.3 MB) 2024-01-11T19:58:37,427 Installing collected packages: maturin 2024-01-11T19:58:37,950 Successfully installed maturin-1.4.0 2024-01-11T19:58:38,229 [notice] A new release of pip is available: 23.3.1 -> 23.3.2 2024-01-11T19:58:38,230 [notice] To update, run: python3 -m pip install --upgrade pip 2024-01-11T19:58:38,497 Installing build dependencies: finished with status 'done' 2024-01-11T19:58:38,500 Getting requirements to build wheel: started 2024-01-11T19:58:38,501 Running command Getting requirements to build wheel 2024-01-11T19:58:38,693 Getting requirements to build wheel: finished with status 'done' 2024-01-11T19:58:38,696 Created temporary directory: /tmp/pip-modern-metadata-lhfoiljj 2024-01-11T19:58:38,699 Preparing metadata (pyproject.toml): started 2024-01-11T19:58:38,700 Running command Preparing metadata (pyproject.toml) 2024-01-11T19:58:39,325 Updating crates.io index 2024-01-11T19:58:45,309 Downloading crates ... 2024-01-11T19:58:46,050 Downloaded ieee754 v0.2.6 2024-01-11T19:58:46,321 Downloaded semver v0.1.20 2024-01-11T19:58:46,343 Downloaded curl-sys v0.4.70+curl-8.5.0 2024-01-11T19:58:51,270 Downloaded bio v1.5.0 2024-01-11T19:58:51,423 Downloaded itertools-num v0.1.3 2024-01-11T19:58:51,444 Downloaded hts-sys v2.1.1 2024-01-11T19:58:52,798 Downloaded libdeflate-sys v0.12.0 2024-01-11T19:58:52,947 Downloaded rust-htslib v0.43.1 2024-01-11T19:58:53,014 Downloaded newtype_derive v0.1.6 2024-01-11T19:58:53,032 Downloaded linear-map v1.2.0 2024-01-11T19:58:53,056 Downloaded libdeflater v0.12.0 2024-01-11T19:58:53,089 Downloaded gbdt v0.1.2 2024-01-11T19:58:53,128 Downloaded fs-utils v1.1.4 2024-01-11T19:58:53,140 Downloaded editdistancek v1.0.2 2024-01-11T19:58:53,156 Downloaded clap_mangen v0.2.17 2024-01-11T19:58:53,173 Downloaded bio-types v1.0.1 2024-01-11T19:58:53,202 Downloaded gzp v0.11.3 2024-01-11T19:58:53,472 Downloaded clap_builder v4.4.15 2024-01-11T19:58:53,579 Downloaded console v0.15.8 2024-01-11T19:58:53,626 Downloaded clap_complete v4.4.6 2024-01-11T19:58:53,669 Downloaded enum-map-derive v0.17.0 2024-01-11T19:58:53,686 Downloaded triple_accel v0.4.0 2024-01-11T19:58:53,718 Downloaded serde_yaml v0.9.30 2024-01-11T19:58:53,781 Downloaded rustc_version v0.1.7 2024-01-11T19:58:53,794 Downloaded roff v0.2.1 2024-01-11T19:58:53,808 Downloaded openssl-sys v0.9.98 2024-01-11T19:58:53,898 Downloaded multimap v0.9.1 2024-01-11T19:58:53,915 Downloaded enum-map v2.7.3 2024-01-11T19:58:53,941 Downloaded derive-new v0.5.9 2024-01-11T19:58:53,955 Downloaded core_affinity v0.8.1 2024-01-11T19:58:53,971 Downloaded clap v4.4.15 2024-01-11T19:58:54,271 🔗 Found pyo3 bindings 2024-01-11T19:58:54,545 🐍 Found CPython 3.11 at /usr/bin/python3 2024-01-11T19:58:54,546 📡 Using build options features from pyproject.toml 2024-01-11T19:58:54,558 pyft-0.1.11.dist-info 2024-01-11T19:58:54,559 Checking for Rust toolchain.... 2024-01-11T19:58:54,559 Running `maturin pep517 write-dist-info --metadata-directory /tmp/pip-modern-metadata-lhfoiljj --interpreter /usr/bin/python3` 2024-01-11T19:58:54,582 Preparing metadata (pyproject.toml): finished with status 'done' 2024-01-11T19:58:54,587 Source in /tmp/pip-wheel-w339cf_w/pyft_8f197e0cb3d34729be4961f7efd5051f has version 0.1.11, which satisfies requirement pyft==0.1.11 from https://files.pythonhosted.org/packages/92/b0/bd729b1b3e99a2214e432386dd52d9d717b5559e8c95e1d4367ad0e10b19/pyft-0.1.11.tar.gz 2024-01-11T19:58:54,587 Removed pyft==0.1.11 from https://files.pythonhosted.org/packages/92/b0/bd729b1b3e99a2214e432386dd52d9d717b5559e8c95e1d4367ad0e10b19/pyft-0.1.11.tar.gz from build tracker '/tmp/pip-build-tracker-onm3d4e_' 2024-01-11T19:58:54,592 Created temporary directory: /tmp/pip-unpack-zdo168ov 2024-01-11T19:58:54,593 Created temporary directory: /tmp/pip-unpack-zwgvydb_ 2024-01-11T19:58:54,595 Building wheels for collected packages: pyft 2024-01-11T19:58:54,599 Created temporary directory: /tmp/pip-wheel-v46y0ssj 2024-01-11T19:58:54,599 Destination directory: /tmp/pip-wheel-v46y0ssj 2024-01-11T19:58:54,601 Building wheel for pyft (pyproject.toml): started 2024-01-11T19:58:54,603 Running command Building wheel for pyft (pyproject.toml) 2024-01-11T19:58:54,766 Running `maturin pep517 build-wheel -i /usr/bin/python3 --compatibility off` 2024-01-11T19:58:55,742 🔗 Found pyo3 bindings 2024-01-11T19:58:56,012 🐍 Found CPython 3.11 at /usr/bin/python3 2024-01-11T19:58:56,013 📡 Using build options features from pyproject.toml 2024-01-11T19:58:57,130 Compiling libc v0.2.152 2024-01-11T19:58:57,131 Compiling proc-macro2 v1.0.76 2024-01-11T19:58:57,132 Compiling unicode-ident v1.0.12 2024-01-11T19:58:57,133 Compiling autocfg v1.1.0 2024-01-11T19:58:57,515 Compiling pkg-config v0.3.28 2024-01-11T19:58:59,778 Compiling syn v1.0.109 2024-01-11T19:59:02,929 Compiling quote v1.0.35 2024-01-11T19:59:05,634 Compiling syn v2.0.48 2024-01-11T19:59:06,240 Compiling cfg-if v1.0.0 2024-01-11T19:59:07,430 Compiling libm v0.2.8 2024-01-11T19:59:08,576 Compiling jobserver v0.1.27 2024-01-11T19:59:08,912 Compiling num-traits v0.2.17 2024-01-11T19:59:10,045 Compiling vcpkg v0.2.15 2024-01-11T19:59:11,879 Compiling cc v1.0.83 2024-01-11T19:59:30,970 Compiling cmake v0.1.50 2024-01-11T19:59:34,484 Compiling getrandom v0.2.12 2024-01-11T19:59:35,652 Compiling memchr v2.7.1 2024-01-11T19:59:36,063 Compiling libz-sys v1.1.14 2024-01-11T19:59:38,810 Compiling rustix v0.38.28 2024-01-11T19:59:41,011 Compiling serde v1.0.195 2024-01-11T19:59:42,603 Compiling target-lexicon v0.12.13 2024-01-11T19:59:46,488 Compiling linux-raw-sys v0.4.12 2024-01-11T19:59:52,229 Compiling bitflags v2.4.1 2024-01-11T20:00:06,104 Compiling serde_derive v1.0.195 2024-01-11T20:00:12,034 Compiling aho-corasick v1.1.2 2024-01-11T20:00:31,561 Compiling openssl-src v300.2.1+3.2.0 2024-01-11T20:00:33,384 Compiling heck v0.4.1 2024-01-11T20:00:34,834 Compiling version_check v0.9.4 2024-01-11T20:00:37,274 Compiling regex-syntax v0.8.2 2024-01-11T20:00:52,751 Compiling openssl-sys v0.9.98 2024-01-11T20:00:53,579 Compiling pyo3-build-config v0.19.2 2024-01-11T20:00:56,953 Compiling regex-automata v0.4.3 2024-01-11T20:01:01,083 Compiling rand_core v0.6.4 2024-01-11T20:01:02,820 Compiling lock_api v0.4.11 2024-01-11T20:01:03,991 Compiling num-integer v0.1.45 2024-01-11T20:01:05,118 Compiling lazy_static v1.4.0 2024-01-11T20:01:05,369 Compiling crossbeam-utils v0.8.19 2024-01-11T20:01:07,171 Compiling thiserror v1.0.56 2024-01-11T20:01:08,892 Compiling ppv-lite86 v0.2.17 2024-01-11T20:01:11,265 Compiling rand_chacha v0.3.1 2024-01-11T20:01:20,299 Compiling regex v1.10.2 2024-01-11T20:01:36,097 Compiling thiserror-impl v1.0.56 2024-01-11T20:01:47,709 Compiling matrixmultiply v0.3.8 2024-01-11T20:01:48,770 Compiling utf8parse v0.2.1 2024-01-11T20:01:49,102 Compiling fnv v1.0.7 2024-01-11T20:01:49,302 Compiling paste v1.0.14 2024-01-11T20:01:50,751 Compiling rustversion v1.0.14 2024-01-11T20:01:52,810 Compiling ident_case v1.0.1 2024-01-11T20:01:53,147 Compiling semver v0.1.20 2024-01-11T20:01:53,918 Compiling scopeguard v1.2.0 2024-01-11T20:01:54,185 Compiling bytemuck v1.14.0 2024-01-11T20:01:55,412 Compiling once_cell v1.19.0 2024-01-11T20:01:55,754 Compiling strsim v0.10.0 2024-01-11T20:01:56,860 Compiling darling_core v0.14.4 2024-01-11T20:02:06,494 Compiling safe_arch v0.7.1 2024-01-11T20:02:06,643 Compiling rustc_version v0.1.7 2024-01-11T20:02:10,101 Compiling anstyle-parse v0.2.3 2024-01-11T20:02:21,470 Compiling rand v0.8.5 2024-01-11T20:02:24,201 Compiling proc-macro-error-attr v1.0.4 2024-01-11T20:02:25,388 Compiling num-complex v0.4.4 2024-01-11T20:02:30,689 Compiling curl-sys v0.4.70+curl-8.5.0 2024-01-11T20:02:31,855 Compiling lzma-sys v0.1.20 2024-01-11T20:02:33,878 Compiling bzip2-sys v0.1.11+1.0.8 2024-01-11T20:02:34,366 Compiling num-rational v0.4.1 2024-01-11T20:02:35,394 Compiling anstyle v1.0.4 2024-01-11T20:02:35,806 Compiling quick-error v1.2.3 2024-01-11T20:02:36,044 Compiling anstyle-query v1.0.2 2024-01-11T20:02:36,320 Compiling itoa v1.0.10 2024-01-11T20:02:37,074 Compiling colorchoice v1.0.0 2024-01-11T20:02:37,232 Compiling crc32fast v1.3.2 2024-01-11T20:02:37,384 Compiling tinyvec_macros v0.1.1 2024-01-11T20:02:37,532 Compiling typenum v1.17.0 2024-01-11T20:02:38,804 Compiling ryu v1.0.16 2024-01-11T20:02:41,100 Compiling rawpointer v0.2.1 2024-01-11T20:02:41,358 Compiling either v1.9.0 2024-01-11T20:02:42,691 Compiling tinyvec v1.6.0 2024-01-11T20:02:50,906 Compiling anstream v0.6.5 2024-01-11T20:02:51,409 Compiling fs-utils v1.1.4 2024-01-11T20:02:54,928 Compiling darling_macro v0.14.4 2024-01-11T20:02:59,141 Compiling crossbeam-epoch v0.9.18 2024-01-11T20:03:13,567 Compiling newtype_derive v0.1.6 2024-01-11T20:03:14,452 Compiling wide v0.7.13 2024-01-11T20:03:21,060 Compiling proc-macro-error v1.0.4 2024-01-11T20:03:22,157 Compiling terminal_size v0.3.0 2024-01-11T20:03:22,673 Compiling approx v0.5.1 2024-01-11T20:03:23,494 Compiling libdeflate-sys v0.12.0 2024-01-11T20:03:25,175 Compiling clap_lex v0.6.0 2024-01-11T20:03:28,129 Compiling byteorder v1.5.0 2024-01-11T20:03:30,243 Compiling hashbrown v0.14.3 2024-01-11T20:03:37,272 Compiling glob v0.3.1 2024-01-11T20:03:40,400 Compiling rayon-core v1.12.0 2024-01-11T20:03:41,342 Compiling adler v1.0.2 2024-01-11T20:03:42,122 Compiling equivalent v1.0.1 2024-01-11T20:03:42,308 Compiling feature-probe v0.1.1 2024-01-11T20:03:42,764 Compiling indexmap v2.1.0 2024-01-11T20:03:43,177 Compiling bv v0.11.1 2024-01-11T20:03:44,170 Compiling miniz_oxide v0.7.1 2024-01-11T20:03:47,801 Compiling hts-sys v2.1.1 2024-01-11T20:03:49,300 Compiling clap_builder v4.4.15 2024-01-11T20:03:50,483 Compiling simba v0.6.0 2024-01-11T20:04:02,803 Compiling strum_macros v0.25.3 2024-01-11T20:04:21,629 Compiling crossbeam-deque v0.8.5 2024-01-11T20:04:23,081 Compiling darling v0.14.4 2024-01-11T20:04:41,351 Compiling unicode-normalization v0.1.22 2024-01-11T20:04:53,351 Compiling rand_distr v0.4.3 2024-01-11T20:04:57,126 Compiling pyo3-ffi v0.19.2 2024-01-11T20:04:58,730 Compiling clap_derive v4.4.7 2024-01-11T20:05:05,593 Compiling nalgebra-macros v0.1.0 2024-01-11T20:05:10,064 Compiling derive-new v0.5.9 2024-01-11T20:05:15,110 Compiling pin-project-internal v1.1.3 2024-01-11T20:05:19,364 Compiling portable-atomic v1.6.0 2024-01-11T20:05:22,673 Compiling unicode-bidi v0.3.14 2024-01-11T20:05:28,401 Compiling percent-encoding v2.3.1 2024-01-11T20:05:30,093 Compiling serde_json v1.0.111 2024-01-11T20:05:31,234 Compiling parking_lot_core v0.9.9 2024-01-11T20:05:32,350 Compiling anyhow v1.0.79 2024-01-11T20:05:34,355 Compiling form_urlencoded v1.2.1 2024-01-11T20:05:35,994 Compiling pin-project v1.1.3 2024-01-11T20:05:36,224 Compiling idna v0.5.0 2024-01-11T20:05:36,392 Compiling clap v4.4.15 2024-01-11T20:05:36,619 Compiling bio-types v1.0.1 2024-01-11T20:05:45,378 Compiling nalgebra v0.29.0 2024-01-11T20:05:51,790 Compiling flate2 v1.0.28 2024-01-11T20:06:00,016 Compiling derive_builder_core v0.12.0 2024-01-11T20:06:10,590 Compiling spin v0.9.8 2024-01-11T20:06:12,123 Compiling enum-map-derive v0.17.0 2024-01-11T20:06:16,448 Compiling csv-core v0.1.11 2024-01-11T20:06:20,115 Compiling nanorand v0.7.0 2024-01-11T20:06:22,690 Compiling num_cpus v1.16.0 2024-01-11T20:06:25,030 Compiling memoffset v0.9.0 2024-01-11T20:06:26,139 Compiling humantime v2.1.0 2024-01-11T20:06:29,368 Compiling futures-sink v0.3.30 2024-01-11T20:06:29,619 Compiling log v0.4.20 2024-01-11T20:06:31,426 Compiling bit-vec v0.6.3 2024-01-11T20:06:31,661 Compiling unicode-width v0.1.11 2024-01-11T20:06:32,009 Compiling termcolor v1.4.1 2024-01-11T20:06:33,343 Compiling smallvec v1.11.2 2024-01-11T20:06:35,263 Compiling fixedbitset v0.4.2 2024-01-11T20:06:36,297 Compiling futures-core v0.3.30 2024-01-11T20:06:36,912 Compiling custom_derive v0.1.7 2024-01-11T20:06:37,094 Compiling flume v0.10.14 2024-01-11T20:06:37,978 Compiling petgraph v0.6.4 2024-01-11T20:06:42,938 Compiling bit-set v0.5.3 2024-01-11T20:06:43,887 Compiling console v0.15.8 2024-01-11T20:06:57,096 Compiling core_affinity v0.8.1 2024-01-11T20:06:57,286 Compiling csv v1.3.0 2024-01-11T20:06:57,876 Compiling enum-map v2.7.3 2024-01-11T20:06:58,906 Compiling rayon v1.8.0 2024-01-11T20:07:16,704 Compiling derive_builder_macro v0.12.0 2024-01-11T20:07:19,877 Compiling getset v0.1.2 2024-01-11T20:07:25,219 Compiling url v2.5.0 2024-01-11T20:07:47,087 Compiling statrs v0.16.0 2024-01-11T20:07:56,400 Compiling fxhash v0.2.1 2024-01-11T20:07:56,932 Compiling ndarray v0.15.6 2024-01-11T20:07:58,948 Compiling itertools v0.11.0 2024-01-11T20:08:13,158 Compiling pyo3 v0.19.2 2024-01-11T20:08:14,203 Compiling vec_map v0.8.2 2024-01-11T20:08:14,603 Compiling multimap v0.9.1 2024-01-11T20:08:15,604 Compiling pyo3-macros-backend v0.19.2 2024-01-11T20:08:15,807 Compiling ordered-float v3.9.2 2024-01-11T20:08:19,902 Compiling itertools-num v0.1.3 2024-01-11T20:08:20,265 Compiling atty v0.2.14 2024-01-11T20:08:20,524 Compiling triple_accel v0.4.0 2024-01-11T20:08:29,071 Compiling roff v0.2.1 2024-01-11T20:08:32,740 Compiling strum v0.25.0 2024-01-11T20:08:33,085 Compiling bytecount v0.6.7 2024-01-11T20:08:33,860 Compiling ieee754 v0.2.6 2024-01-11T20:08:34,451 Compiling fibertools-rs v0.3.7 (/tmp/pip-wheel-w339cf_w/pyft_8f197e0cb3d34729be4961f7efd5051f) 2024-01-11T20:08:35,780 Compiling unsafe-libyaml v0.2.10 2024-01-11T20:08:43,351 Compiling fastrand v2.0.1 2024-01-11T20:08:45,757 Compiling linear-map v1.2.0 2024-01-11T20:08:47,283 Compiling bytes v1.5.0 2024-01-11T20:08:50,626 Compiling number_prefix v0.4.0 2024-01-11T20:08:51,183 Compiling editdistancek v1.0.2 2024-01-11T20:08:52,120 Compiling bio v1.5.0 2024-01-11T20:08:55,259 Compiling indicatif v0.17.7 2024-01-11T20:09:02,753 Compiling pyo3-macros v0.19.2 2024-01-11T20:09:07,326 Compiling tempfile v3.9.0 2024-01-11T20:09:16,016 Compiling serde_yaml v0.9.30 2024-01-11T20:09:27,183 Compiling clap_mangen v0.2.17 2024-01-11T20:09:41,040 Compiling env_logger v0.9.3 2024-01-11T20:09:56,593 Compiling gbdt v0.1.2 2024-01-11T20:10:01,877 Compiling derive_builder v0.12.0 2024-01-11T20:10:02,419 Compiling parking_lot v0.12.1 2024-01-11T20:10:19,070 Compiling niffler v2.5.0 2024-01-11T20:10:36,623 Compiling clap_complete v4.4.6 2024-01-11T20:10:45,252 Compiling itertools v0.10.5 2024-01-11T20:11:01,078 Compiling colored v2.1.0 2024-01-11T20:11:06,412 Compiling is-terminal v0.4.10 2024-01-11T20:11:06,613 Compiling unindent v0.1.11 2024-01-11T20:11:08,622 Compiling indoc v1.0.9 2024-01-11T20:11:10,715 Compiling env_logger v0.10.1 2024-01-11T20:11:41,642 Compiling libdeflater v0.12.0 2024-01-11T20:11:42,418 Compiling gzp v0.11.3 2024-01-11T20:15:15,165 Compiling rust-htslib v0.43.1 2024-01-11T20:15:16,554 error[E0308]: mismatched types 2024-01-11T20:15:16,555 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.43.1/src/bam/record.rs:154:16 2024-01-11T20:15:16,556 | 2024-01-11T20:15:16,556 154 | l: sam_copy.len() as u64, 2024-01-11T20:15:16,557 | ^^^^^^^^^^^^^^^^^^^^^ expected `u32`, found `u64` 2024-01-11T20:15:16,563 error[E0308]: mismatched types 2024-01-11T20:15:16,563 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.43.1/src/bam/record.rs:155:16 2024-01-11T20:15:16,564 | 2024-01-11T20:15:16,565 155 | m: sam_copy.len() as u64, 2024-01-11T20:15:16,565 | ^^^^^^^^^^^^^^^^^^^^^ expected `u32`, found `u64` 2024-01-11T20:15:17,027 error[E0308]: mismatched types 2024-01-11T20:15:17,028 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.43.1/src/bam/mod.rs:1128:29 2024-01-11T20:15:17,028 | 2024-01-11T20:15:17,029 1128 | (*rec).l_text = l_text as u64; 2024-01-11T20:15:17,029 | ------------- ^^^^^^^^^^^^^ expected `u32`, found `u64` 2024-01-11T20:15:17,030 | | 2024-01-11T20:15:17,031 | expected due to the type of this binding 2024-01-11T20:15:17,068 error[E0308]: mismatched types 2024-01-11T20:15:17,069 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.43.1/src/bam/mod.rs:1393:45 2024-01-11T20:15:17,069 | 2024-01-11T20:15:17,070 1393 | let rec = htslib::sam_hdr_parse((l_text + 1) as u64, text as *const c_char); 2024-01-11T20:15:17,071 | --------------------- ^^^^^^^^^^^^^^^^^^^ expected `u32`, found `u64` 2024-01-11T20:15:17,071 | | 2024-01-11T20:15:17,072 | arguments to this function are incorrect 2024-01-11T20:15:17,073 | 2024-01-11T20:15:17,074 note: function defined here 2024-01-11T20:15:17,075 --> /tmp/pip-wheel-w339cf_w/pyft_8f197e0cb3d34729be4961f7efd5051f/py-ft/target/release/build/hts-sys-0dc3c07fc7f42bdc/out/bindings.rs:8520:12 2024-01-11T20:15:17,076 | 2024-01-11T20:15:17,076 8520 | pub fn sam_hdr_parse(l_text: size_t, text: *const ::std::os::raw::c_char) -> *mut sam_hdr_t; 2024-01-11T20:15:17,077 | ^^^^^^^^^^^^^ 2024-01-11T20:15:17,078 help: you can convert a `u64` to a `u32` and panic if the converted value doesn't fit 2024-01-11T20:15:17,079 | 2024-01-11T20:15:17,079 1393 | let rec = htslib::sam_hdr_parse(((l_text + 1) as u64).try_into().unwrap(), text as *const c_char); 2024-01-11T20:15:17,080 | + +++++++++++++++++++++ 2024-01-11T20:15:17,082 error[E0308]: mismatched types 2024-01-11T20:15:17,082 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.43.1/src/bam/mod.rs:1395:29 2024-01-11T20:15:17,083 | 2024-01-11T20:15:17,084 1395 | (*rec).l_text = l_text as u64; 2024-01-11T20:15:17,085 | ------------- ^^^^^^^^^^^^^ expected `u32`, found `u64` 2024-01-11T20:15:17,086 | | 2024-01-11T20:15:17,086 | expected due to the type of this binding 2024-01-11T20:15:17,299 error[E0308]: mismatched types 2024-01-11T20:15:17,300 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.43.1/src/bcf/record.rs:1011:48 2024-01-11T20:15:17,300 | 2024-01-11T20:15:17,301 1011 | let rm_set = unsafe { htslib::kbs_init(remove.len() as u64) }; 2024-01-11T20:15:17,301 | ---------------- ^^^^^^^^^^^^^^^^^^^ expected `u32`, found `u64` 2024-01-11T20:15:17,302 | | 2024-01-11T20:15:17,303 | arguments to this function are incorrect 2024-01-11T20:15:17,303 | 2024-01-11T20:15:17,304 note: function defined here 2024-01-11T20:15:17,304 --> /tmp/pip-wheel-w339cf_w/pyft_8f197e0cb3d34729be4961f7efd5051f/py-ft/target/release/build/hts-sys-0dc3c07fc7f42bdc/out/bindings.rs:11642:12 2024-01-11T20:15:17,305 | 2024-01-11T20:15:17,305 11642 | pub fn kbs_init(ni: size_t) -> *mut kbitset_t; 2024-01-11T20:15:17,306 | ^^^^^^^^ 2024-01-11T20:15:17,307 help: you can convert a `u64` to a `u32` and panic if the converted value doesn't fit 2024-01-11T20:15:17,307 | 2024-01-11T20:15:17,308 1011 | let rm_set = unsafe { htslib::kbs_init((remove.len() as u64).try_into().unwrap()) }; 2024-01-11T20:15:17,308 | + +++++++++++++++++++++ 2024-01-11T20:15:17,504 error[E0308]: mismatched types 2024-01-11T20:15:17,504 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.43.1/src/bgzf/mod.rs:118:17 2024-01-11T20:15:17,505 | 2024-01-11T20:15:17,505 115 | htslib::bgzf_read( 2024-01-11T20:15:17,506 | ----------------- arguments to this function are incorrect 2024-01-11T20:15:17,507 ... 2024-01-11T20:15:17,507 118 | buf.len() as u64, 2024-01-11T20:15:17,508 | ^^^^^^^^^^^^^^^^ expected `u32`, found `u64` 2024-01-11T20:15:17,509 | 2024-01-11T20:15:17,510 note: function defined here 2024-01-11T20:15:17,510 --> /tmp/pip-wheel-w339cf_w/pyft_8f197e0cb3d34729be4961f7efd5051f/py-ft/target/release/build/hts-sys-0dc3c07fc7f42bdc/out/bindings.rs:10097:12 2024-01-11T20:15:17,511 | 2024-01-11T20:15:17,512 10097 | pub fn bgzf_read(fp: *mut BGZF, data: *mut ::std::os::raw::c_void, length: size_t) -> ssize_t; 2024-01-11T20:15:17,513 | ^^^^^^^^^ 2024-01-11T20:15:17,513 help: you can convert a `u64` to a `u32` and panic if the converted value doesn't fit 2024-01-11T20:15:17,514 | 2024-01-11T20:15:17,515 118 | (buf.len() as u64).try_into().unwrap(), 2024-01-11T20:15:17,516 | + +++++++++++++++++++++ 2024-01-11T20:15:17,535 error[E0308]: mismatched types 2024-01-11T20:15:17,536 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.43.1/src/bgzf/mod.rs:264:17 2024-01-11T20:15:17,536 | 2024-01-11T20:15:17,537 261 | htslib::bgzf_write( 2024-01-11T20:15:17,538 | ------------------ arguments to this function are incorrect 2024-01-11T20:15:17,539 ... 2024-01-11T20:15:17,539 264 | buf.len() as u64, 2024-01-11T20:15:17,540 | ^^^^^^^^^^^^^^^^ expected `u32`, found `u64` 2024-01-11T20:15:17,541 | 2024-01-11T20:15:17,541 note: function defined here 2024-01-11T20:15:17,542 --> /tmp/pip-wheel-w339cf_w/pyft_8f197e0cb3d34729be4961f7efd5051f/py-ft/target/release/build/hts-sys-0dc3c07fc7f42bdc/out/bindings.rs:10100:12 2024-01-11T20:15:17,543 | 2024-01-11T20:15:17,543 10100 | pub fn bgzf_write( 2024-01-11T20:15:17,544 | ^^^^^^^^^^ 2024-01-11T20:15:17,545 help: you can convert a `u64` to a `u32` and panic if the converted value doesn't fit 2024-01-11T20:15:17,546 | 2024-01-11T20:15:17,547 264 | (buf.len() as u64).try_into().unwrap(), 2024-01-11T20:15:17,547 | + +++++++++++++++++++++ 2024-01-11T20:15:17,696 For more information about this error, try `rustc --explain E0308`. 2024-01-11T20:15:17,714 error: could not compile `rust-htslib` (lib) due to 8 previous errors 2024-01-11T20:15:17,744 💥 maturin failed 2024-01-11T20:15:17,745 Caused by: Failed to build a native library through cargo 2024-01-11T20:15:17,746 Caused by: Cargo build finished with "exit status: 101": `env -u CARGO PYO3_ENVIRONMENT_SIGNATURE="cpython-3.11-64bit" PYO3_PYTHON="/usr/bin/python3" PYTHON_SYS_EXECUTABLE="/usr/bin/python3" "cargo" "rustc" "--features" "pyo3/extension-module" "--message-format" "json-render-diagnostics" "--manifest-path" "/tmp/pip-wheel-w339cf_w/pyft_8f197e0cb3d34729be4961f7efd5051f/py-ft/Cargo.toml" "--release" "--lib"` 2024-01-11T20:15:17,747 Error: command ['maturin', 'pep517', 'build-wheel', '-i', '/usr/bin/python3', '--compatibility', 'off'] returned non-zero exit status 1 2024-01-11T20:15:17,765 ERROR: Building wheel for pyft (pyproject.toml) exited with 1 2024-01-11T20:15:17,778 [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/local/lib/python3.11/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmptgt7ni2j[/] 2024-01-11T20:15:17,779 [bold magenta]cwd[/]: /tmp/pip-wheel-w339cf_w/pyft_8f197e0cb3d34729be4961f7efd5051f 2024-01-11T20:15:17,779 Building wheel for pyft (pyproject.toml): finished with status 'error' 2024-01-11T20:15:17,781 ERROR: Failed building wheel for pyft 2024-01-11T20:15:17,784 Failed to build pyft 2024-01-11T20:15:17,785 ERROR: Failed to build one or more wheels 2024-01-11T20:15:17,786 Exception information: 2024-01-11T20:15:17,786 Traceback (most recent call last): 2024-01-11T20:15:17,786 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2024-01-11T20:15:17,786 status = run_func(*args) 2024-01-11T20:15:17,786 ^^^^^^^^^^^^^^^ 2024-01-11T20:15:17,786 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 245, in wrapper 2024-01-11T20:15:17,786 return func(self, options, args) 2024-01-11T20:15:17,786 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-01-11T20:15:17,786 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run 2024-01-11T20:15:17,786 raise CommandError("Failed to build one or more wheels") 2024-01-11T20:15:17,786 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2024-01-11T20:15:17,791 Removed build tracker: '/tmp/pip-build-tracker-onm3d4e_'