2024-01-12T19:35:18,259 Created temporary directory: /tmp/pip-build-tracker-0diunbcl 2024-01-12T19:35:18,260 Initialized build tracking at /tmp/pip-build-tracker-0diunbcl 2024-01-12T19:35:18,261 Created build tracker: /tmp/pip-build-tracker-0diunbcl 2024-01-12T19:35:18,261 Entered build tracker: /tmp/pip-build-tracker-0diunbcl 2024-01-12T19:35:18,262 Created temporary directory: /tmp/pip-wheel-xft9h7nd 2024-01-12T19:35:18,265 Created temporary directory: /tmp/pip-ephem-wheel-cache-zf4ov42n 2024-01-12T19:35:18,287 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-12T19:35:18,291 2 location(s) to search for versions of historydag: 2024-01-12T19:35:18,291 * https://pypi.org/simple/historydag/ 2024-01-12T19:35:18,291 * https://www.piwheels.org/simple/historydag/ 2024-01-12T19:35:18,292 Fetching project page and analyzing links: https://pypi.org/simple/historydag/ 2024-01-12T19:35:18,292 Getting page https://pypi.org/simple/historydag/ 2024-01-12T19:35:18,294 Found index url https://pypi.org/simple/ 2024-01-12T19:35:18,509 Fetched page https://pypi.org/simple/historydag/ as application/vnd.pypi.simple.v1+json 2024-01-12T19:35:18,513 Skipping link: No binaries permitted for historydag: https://files.pythonhosted.org/packages/31/11/04b02eafa05e823bc769ac8e77f076a5334c840f4a0e5d8a64a02298e6a4/historydag-0.1-py3-none-any.whl (from https://pypi.org/simple/historydag/) (requires-python:>=3.7) 2024-01-12T19:35:18,514 Found link https://files.pythonhosted.org/packages/3a/d6/f1c6c789a7196606d3079cb7bce124b5e79c5c49b258e611aaffb991865e/historydag-0.1.tar.gz (from https://pypi.org/simple/historydag/) (requires-python:>=3.7), version: 0.1 2024-01-12T19:35:18,514 Skipping link: No binaries permitted for historydag: https://files.pythonhosted.org/packages/fe/94/a5e88ca3c08afc8ee6ee57593f8297e07b730a2e464d5fc972f8a003ccd6/historydag-0.1.2-py3-none-any.whl (from https://pypi.org/simple/historydag/) (requires-python:>=3.7) 2024-01-12T19:35:18,515 Found link https://files.pythonhosted.org/packages/a3/bd/a6a86b643e1109cb75790b06ec6c6f19bd32ea71e375e86fd3c113177720/historydag-0.1.2.tar.gz (from https://pypi.org/simple/historydag/) (requires-python:>=3.7), version: 0.1.2 2024-01-12T19:35:18,516 Skipping link: No binaries permitted for historydag: https://files.pythonhosted.org/packages/10/fc/b73bc070576eb10e1178badac9214641e216c5032dc0d5b9f11a51920851/historydag-0.1.3-py3-none-any.whl (from https://pypi.org/simple/historydag/) (requires-python:>=3.7) 2024-01-12T19:35:18,517 Found link https://files.pythonhosted.org/packages/2a/94/551af6c61b2294ff431081146ea313062d23c1462c4e359605649d5930b8/historydag-0.1.3.tar.gz (from https://pypi.org/simple/historydag/) (requires-python:>=3.7), version: 0.1.3 2024-01-12T19:35:18,518 Skipping link: No binaries permitted for historydag: https://files.pythonhosted.org/packages/f1/b4/857903633ad08fa67821b139ae6b43d383ce5279d7a6dac125e73b50ea13/historydag-1.0.0-py3-none-any.whl (from https://pypi.org/simple/historydag/) (requires-python:>=3.7) 2024-01-12T19:35:18,519 Found link https://files.pythonhosted.org/packages/ec/15/9f966df549b9a4da43e4666061fda2aaa263aa90e47def241032cded52e3/historydag-1.0.0.tar.gz (from https://pypi.org/simple/historydag/) (requires-python:>=3.7), version: 1.0.0 2024-01-12T19:35:18,520 Skipping link: No binaries permitted for historydag: https://files.pythonhosted.org/packages/0f/10/07e579db93b997750761c2083aa3dcdca6cb57b3e168446b1b3059a054d2/historydag-1.0.1-py3-none-any.whl (from https://pypi.org/simple/historydag/) (requires-python:>=3.7) 2024-01-12T19:35:18,520 Found link https://files.pythonhosted.org/packages/1f/24/7f2e2300e451f53d0b2f1f3aca6346bcc3eb408bbf60e29e26ecb94627bd/historydag-1.0.1.tar.gz (from https://pypi.org/simple/historydag/) (requires-python:>=3.7), version: 1.0.1 2024-01-12T19:35:18,521 Skipping link: No binaries permitted for historydag: https://files.pythonhosted.org/packages/f5/5f/a163812faf510a73295d1bf6e091abe06025fe8f2dcc56ac2bde29fa8562/historydag-1.1.0-py3-none-any.whl (from https://pypi.org/simple/historydag/) (requires-python:>=3.7) 2024-01-12T19:35:18,522 Found link https://files.pythonhosted.org/packages/69/63/8bf182fe9e30def6cfff008dd01289b7cc513a3c8a7115282df52f052c2a/historydag-1.1.0.tar.gz (from https://pypi.org/simple/historydag/) (requires-python:>=3.7), version: 1.1.0 2024-01-12T19:35:18,523 Skipping link: No binaries permitted for historydag: https://files.pythonhosted.org/packages/00/21/234dd72988a2e8b28aba5df488f675f7a6a440900b0f203cb1f932f0212b/historydag-1.2.0-py3-none-any.whl (from https://pypi.org/simple/historydag/) (requires-python:>=3.7) 2024-01-12T19:35:18,524 Found link https://files.pythonhosted.org/packages/ee/18/aa8214e5fbead92e27d1516b4ff5adac17eb46c9a3a7ca9107401d64f398/historydag-1.2.0.tar.gz (from https://pypi.org/simple/historydag/) (requires-python:>=3.7), version: 1.2.0 2024-01-12T19:35:18,525 Fetching project page and analyzing links: https://www.piwheels.org/simple/historydag/ 2024-01-12T19:35:18,525 Getting page https://www.piwheels.org/simple/historydag/ 2024-01-12T19:35:18,526 Found index url https://www.piwheels.org/simple/ 2024-01-12T19:35:18,698 Fetched page https://www.piwheels.org/simple/historydag/ as text/html 2024-01-12T19:35:18,701 Skipping link: No binaries permitted for historydag: https://www.piwheels.org/simple/historydag/historydag-1.1.0-py3-none-any.whl#sha256=9ccbbfa91b3e33d216ef43eaa99671485751609a02c6a69ee1624dfb6df243c7 (from https://www.piwheels.org/simple/historydag/) (requires-python:>=3.7) 2024-01-12T19:35:18,701 Skipping link: No binaries permitted for historydag: https://www.piwheels.org/simple/historydag/historydag-1.0.1-py3-none-any.whl#sha256=c32772945aaa5e8dcc48c8242dd4b80e62b85a02244d962c1263f476035880a8 (from https://www.piwheels.org/simple/historydag/) (requires-python:>=3.7) 2024-01-12T19:35:18,702 Skipping link: No binaries permitted for historydag: https://www.piwheels.org/simple/historydag/historydag-1.0.0-py3-none-any.whl#sha256=e5cd5274c840582b631ac23066573c4dc46243176615f86ae5042c729fd3d654 (from https://www.piwheels.org/simple/historydag/) (requires-python:>=3.7) 2024-01-12T19:35:18,702 Skipping link: No binaries permitted for historydag: https://www.piwheels.org/simple/historydag/historydag-0.1.3-py3-none-any.whl#sha256=d340a1460cfd0f94d28ce330f3261339ab61f913c390e7ebd11184ab23cd9535 (from https://www.piwheels.org/simple/historydag/) (requires-python:>=3.7) 2024-01-12T19:35:18,703 Skipping link: No binaries permitted for historydag: https://www.piwheels.org/simple/historydag/historydag-0.1.2-py3-none-any.whl#sha256=df4c3e1e06b8edde4bc12908113a552612b5bbc1483cac1d1ecdfb0e915e2bba (from https://www.piwheels.org/simple/historydag/) (requires-python:>=3.7) 2024-01-12T19:35:18,703 Skipping link: No binaries permitted for historydag: https://www.piwheels.org/simple/historydag/historydag-0.1-py3-none-any.whl#sha256=d862e2d7050b1450b635e23abd5abdb762e129cff40374821862f8be7431ae31 (from https://www.piwheels.org/simple/historydag/) (requires-python:>=3.7) 2024-01-12T19:35:18,704 Skipping link: not a file: https://www.piwheels.org/simple/historydag/ 2024-01-12T19:35:18,705 Skipping link: not a file: https://pypi.org/simple/historydag/ 2024-01-12T19:35:18,724 Given no hashes to check 1 links for project 'historydag': discarding no candidates 2024-01-12T19:35:18,742 Collecting historydag==1.2.0 2024-01-12T19:35:18,745 Created temporary directory: /tmp/pip-unpack-03pef6tg 2024-01-12T19:35:18,959 Downloading historydag-1.2.0.tar.gz (134 kB) 2024-01-12T19:35:19,114 Added historydag==1.2.0 from https://files.pythonhosted.org/packages/ee/18/aa8214e5fbead92e27d1516b4ff5adac17eb46c9a3a7ca9107401d64f398/historydag-1.2.0.tar.gz to build tracker '/tmp/pip-build-tracker-0diunbcl' 2024-01-12T19:35:19,117 Running setup.py (path:/tmp/pip-wheel-xft9h7nd/historydag_3cb86883560f4e0bb2293dd0b80e8869/setup.py) egg_info for package historydag 2024-01-12T19:35:19,118 Created temporary directory: /tmp/pip-pip-egg-info-zs23bsks 2024-01-12T19:35:19,118 Preparing metadata (setup.py): started 2024-01-12T19:35:19,120 Running command python setup.py egg_info 2024-01-12T19:35:20,205 running egg_info 2024-01-12T19:35:20,207 creating /tmp/pip-pip-egg-info-zs23bsks/historydag.egg-info 2024-01-12T19:35:20,231 writing /tmp/pip-pip-egg-info-zs23bsks/historydag.egg-info/PKG-INFO 2024-01-12T19:35:20,234 writing dependency_links to /tmp/pip-pip-egg-info-zs23bsks/historydag.egg-info/dependency_links.txt 2024-01-12T19:35:20,236 writing requirements to /tmp/pip-pip-egg-info-zs23bsks/historydag.egg-info/requires.txt 2024-01-12T19:35:20,237 writing top-level names to /tmp/pip-pip-egg-info-zs23bsks/historydag.egg-info/top_level.txt 2024-01-12T19:35:20,238 writing manifest file '/tmp/pip-pip-egg-info-zs23bsks/historydag.egg-info/SOURCES.txt' 2024-01-12T19:35:20,290 reading manifest file '/tmp/pip-pip-egg-info-zs23bsks/historydag.egg-info/SOURCES.txt' 2024-01-12T19:35:20,292 reading manifest template 'MANIFEST.in' 2024-01-12T19:35:20,293 adding license file 'LICENSE' 2024-01-12T19:35:20,295 writing manifest file '/tmp/pip-pip-egg-info-zs23bsks/historydag.egg-info/SOURCES.txt' 2024-01-12T19:35:20,402 Preparing metadata (setup.py): finished with status 'done' 2024-01-12T19:35:20,406 Source in /tmp/pip-wheel-xft9h7nd/historydag_3cb86883560f4e0bb2293dd0b80e8869 has version 1.2.0, which satisfies requirement historydag==1.2.0 from https://files.pythonhosted.org/packages/ee/18/aa8214e5fbead92e27d1516b4ff5adac17eb46c9a3a7ca9107401d64f398/historydag-1.2.0.tar.gz 2024-01-12T19:35:20,407 Removed historydag==1.2.0 from https://files.pythonhosted.org/packages/ee/18/aa8214e5fbead92e27d1516b4ff5adac17eb46c9a3a7ca9107401d64f398/historydag-1.2.0.tar.gz from build tracker '/tmp/pip-build-tracker-0diunbcl' 2024-01-12T19:35:20,413 Created temporary directory: /tmp/pip-unpack-ih1p4fpx 2024-01-12T19:35:20,414 Created temporary directory: /tmp/pip-unpack-tfo599hh 2024-01-12T19:35:20,423 Building wheels for collected packages: historydag 2024-01-12T19:35:20,427 Created temporary directory: /tmp/pip-wheel-on4qzbnv 2024-01-12T19:35:20,427 Building wheel for historydag (setup.py): started 2024-01-12T19:35:20,429 Destination directory: /tmp/pip-wheel-on4qzbnv 2024-01-12T19:35:20,429 Running command python setup.py bdist_wheel 2024-01-12T19:35:21,431 running bdist_wheel 2024-01-12T19:35:21,500 running build 2024-01-12T19:35:21,501 running build_py 2024-01-12T19:35:21,505 creating build 2024-01-12T19:35:21,506 creating build/lib 2024-01-12T19:35:21,507 creating build/lib/historydag 2024-01-12T19:35:21,508 copying historydag/parsimony_utils.py -> build/lib/historydag 2024-01-12T19:35:21,510 copying historydag/sequence_dag.py -> build/lib/historydag 2024-01-12T19:35:21,512 copying historydag/dag.py -> build/lib/historydag 2024-01-12T19:35:21,517 copying historydag/compact_genome.py -> build/lib/historydag 2024-01-12T19:35:21,519 copying historydag/dag_pb2.py -> build/lib/historydag 2024-01-12T19:35:21,521 copying historydag/__init__.py -> build/lib/historydag 2024-01-12T19:35:21,523 copying historydag/dag_node.py -> build/lib/historydag 2024-01-12T19:35:21,525 copying historydag/likelihoods.py -> build/lib/historydag 2024-01-12T19:35:21,527 copying historydag/_version.py -> build/lib/historydag 2024-01-12T19:35:21,528 copying historydag/utils.py -> build/lib/historydag 2024-01-12T19:35:21,531 copying historydag/parsimony.py -> build/lib/historydag 2024-01-12T19:35:21,533 copying historydag/counterops.py -> build/lib/historydag 2024-01-12T19:35:21,535 copying historydag/mutation_annotated_dag.py -> build/lib/historydag 2024-01-12T19:35:21,538 copying historydag/beast_loader.py -> build/lib/historydag 2024-01-12T19:35:21,540 copying historydag/sankoff_cli.py -> build/lib/historydag 2024-01-12T19:35:21,543 UPDATING build/lib/historydag/_version.py 2024-01-12T19:35:21,544 set build/lib/historydag/_version.py to '1.2.0' 2024-01-12T19:35:21,568 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-01-12T19:35:21,569 !! 2024-01-12T19:35:21,570 ******************************************************************************** 2024-01-12T19:35:21,571 Please avoid running ``setup.py`` directly. 2024-01-12T19:35:21,572 Instead, use pypa/build, pypa/installer or other 2024-01-12T19:35:21,572 standards-based tools. 2024-01-12T19:35:21,573 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-01-12T19:35:21,574 ******************************************************************************** 2024-01-12T19:35:21,574 !! 2024-01-12T19:35:21,575 self.initialize_options() 2024-01-12T19:35:21,592 installing to build/bdist.linux-armv7l/wheel 2024-01-12T19:35:21,593 running install 2024-01-12T19:35:21,616 running install_lib 2024-01-12T19:35:21,640 creating build/bdist.linux-armv7l 2024-01-12T19:35:21,640 creating build/bdist.linux-armv7l/wheel 2024-01-12T19:35:21,642 creating build/bdist.linux-armv7l/wheel/historydag 2024-01-12T19:35:21,643 copying build/lib/historydag/parsimony_utils.py -> build/bdist.linux-armv7l/wheel/historydag 2024-01-12T19:35:21,645 copying build/lib/historydag/sequence_dag.py -> build/bdist.linux-armv7l/wheel/historydag 2024-01-12T19:35:21,647 copying build/lib/historydag/dag.py -> build/bdist.linux-armv7l/wheel/historydag 2024-01-12T19:35:21,651 copying build/lib/historydag/compact_genome.py -> build/bdist.linux-armv7l/wheel/historydag 2024-01-12T19:35:21,654 copying build/lib/historydag/dag_pb2.py -> build/bdist.linux-armv7l/wheel/historydag 2024-01-12T19:35:21,655 copying build/lib/historydag/__init__.py -> build/bdist.linux-armv7l/wheel/historydag 2024-01-12T19:35:21,657 copying build/lib/historydag/dag_node.py -> build/bdist.linux-armv7l/wheel/historydag 2024-01-12T19:35:21,659 copying build/lib/historydag/likelihoods.py -> build/bdist.linux-armv7l/wheel/historydag 2024-01-12T19:35:21,661 copying build/lib/historydag/_version.py -> build/bdist.linux-armv7l/wheel/historydag 2024-01-12T19:35:21,663 copying build/lib/historydag/utils.py -> build/bdist.linux-armv7l/wheel/historydag 2024-01-12T19:35:21,666 copying build/lib/historydag/parsimony.py -> build/bdist.linux-armv7l/wheel/historydag 2024-01-12T19:35:21,668 copying build/lib/historydag/counterops.py -> build/bdist.linux-armv7l/wheel/historydag 2024-01-12T19:35:21,670 copying build/lib/historydag/mutation_annotated_dag.py -> build/bdist.linux-armv7l/wheel/historydag 2024-01-12T19:35:21,673 copying build/lib/historydag/beast_loader.py -> build/bdist.linux-armv7l/wheel/historydag 2024-01-12T19:35:21,675 copying build/lib/historydag/sankoff_cli.py -> build/bdist.linux-armv7l/wheel/historydag 2024-01-12T19:35:21,677 running install_egg_info 2024-01-12T19:35:21,736 running egg_info 2024-01-12T19:35:21,759 writing historydag.egg-info/PKG-INFO 2024-01-12T19:35:21,762 writing dependency_links to historydag.egg-info/dependency_links.txt 2024-01-12T19:35:21,764 writing requirements to historydag.egg-info/requires.txt 2024-01-12T19:35:21,765 writing top-level names to historydag.egg-info/top_level.txt 2024-01-12T19:35:21,792 reading manifest file 'historydag.egg-info/SOURCES.txt' 2024-01-12T19:35:21,794 reading manifest template 'MANIFEST.in' 2024-01-12T19:35:21,795 adding license file 'LICENSE' 2024-01-12T19:35:21,797 writing manifest file 'historydag.egg-info/SOURCES.txt' 2024-01-12T19:35:21,799 Copying historydag.egg-info to build/bdist.linux-armv7l/wheel/historydag-1.2.0-py3.11.egg-info 2024-01-12T19:35:21,808 running install_scripts 2024-01-12T19:35:21,823 creating build/bdist.linux-armv7l/wheel/historydag-1.2.0.dist-info/WHEEL 2024-01-12T19:35:21,825 creating '/tmp/pip-wheel-on4qzbnv/historydag-1.2.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-01-12T19:35:21,827 adding 'historydag/__init__.py' 2024-01-12T19:35:21,829 adding 'historydag/_version.py' 2024-01-12T19:35:21,831 adding 'historydag/beast_loader.py' 2024-01-12T19:35:21,834 adding 'historydag/compact_genome.py' 2024-01-12T19:35:21,835 adding 'historydag/counterops.py' 2024-01-12T19:35:21,854 adding 'historydag/dag.py' 2024-01-12T19:35:21,857 adding 'historydag/dag_node.py' 2024-01-12T19:35:21,859 adding 'historydag/dag_pb2.py' 2024-01-12T19:35:21,860 adding 'historydag/likelihoods.py' 2024-01-12T19:35:21,864 adding 'historydag/mutation_annotated_dag.py' 2024-01-12T19:35:21,867 adding 'historydag/parsimony.py' 2024-01-12T19:35:21,871 adding 'historydag/parsimony_utils.py' 2024-01-12T19:35:21,873 adding 'historydag/sankoff_cli.py' 2024-01-12T19:35:21,874 adding 'historydag/sequence_dag.py' 2024-01-12T19:35:21,879 adding 'historydag/utils.py' 2024-01-12T19:35:21,886 adding 'historydag-1.2.0.dist-info/LICENSE' 2024-01-12T19:35:21,888 adding 'historydag-1.2.0.dist-info/METADATA' 2024-01-12T19:35:21,889 adding 'historydag-1.2.0.dist-info/WHEEL' 2024-01-12T19:35:21,890 adding 'historydag-1.2.0.dist-info/top_level.txt' 2024-01-12T19:35:21,891 adding 'historydag-1.2.0.dist-info/RECORD' 2024-01-12T19:35:21,894 removing build/bdist.linux-armv7l/wheel 2024-01-12T19:35:22,008 Building wheel for historydag (setup.py): finished with status 'done' 2024-01-12T19:35:22,012 Created wheel for historydag: filename=historydag-1.2.0-py3-none-any.whl size=101867 sha256=aa15680aa631d4b69fbfd48f8338d420698d2fb3d8b25a2462b1a9889fb22e0d 2024-01-12T19:35:22,013 Stored in directory: /tmp/pip-ephem-wheel-cache-zf4ov42n/wheels/ab/ca/18/f96f8ce8769cbb5178bb6cd989fefff27f9022307ad5dc760a 2024-01-12T19:35:22,024 Successfully built historydag 2024-01-12T19:35:22,029 Removed build tracker: '/tmp/pip-build-tracker-0diunbcl'