2024-01-12T22:38:53,839 Created temporary directory: /tmp/pip-build-tracker-lgcp6lnk 2024-01-12T22:38:53,840 Initialized build tracking at /tmp/pip-build-tracker-lgcp6lnk 2024-01-12T22:38:53,841 Created build tracker: /tmp/pip-build-tracker-lgcp6lnk 2024-01-12T22:38:53,841 Entered build tracker: /tmp/pip-build-tracker-lgcp6lnk 2024-01-12T22:38:53,842 Created temporary directory: /tmp/pip-wheel-nwv2k80t 2024-01-12T22:38:53,845 Created temporary directory: /tmp/pip-ephem-wheel-cache-apo2_q2e 2024-01-12T22:38:53,870 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-12T22:38:53,873 2 location(s) to search for versions of pyft: 2024-01-12T22:38:53,873 * https://pypi.org/simple/pyft/ 2024-01-12T22:38:53,873 * https://www.piwheels.org/simple/pyft/ 2024-01-12T22:38:53,874 Fetching project page and analyzing links: https://pypi.org/simple/pyft/ 2024-01-12T22:38:53,875 Getting page https://pypi.org/simple/pyft/ 2024-01-12T22:38:53,876 Found index url https://pypi.org/simple/ 2024-01-12T22:38:54,099 Fetched page https://pypi.org/simple/pyft/ as application/vnd.pypi.simple.v1+json 2024-01-12T22:38:54,105 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/d7/62/f180b758be35243ef8a74361f533c974f7294541f16c9bc82cdcc29983e0/pyft-0.1.0-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2024-01-12T22:38:54,106 Found link https://files.pythonhosted.org/packages/c5/b3/4729bed033d7a353ec71381fa9e1ade1bf7a186a837ed3627b31265ddede/pyft-0.1.0.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.0 2024-01-12T22:38:54,106 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/cb/27/9e42da52a20d9b691ef37a8828764cd904af507b9107a386d55614566304/pyft-0.1.1-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2024-01-12T22:38:54,107 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/42/ec/1bf1615986fee7e2940dcd8902ef14457658d94208b01d95549253b62843/pyft-0.1.2-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2024-01-12T22:38:54,108 Found link https://files.pythonhosted.org/packages/0a/0b/139d65d937bc185b68d3eff484ce5c3ca5e3bfc3150b2020d0b604b64d66/pyft-0.1.2.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.2 2024-01-12T22:38:54,108 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/04/9b/b53f6e949dabc348f4bf60f9d11a473764e589d6041be074cbcf20a42900/pyft-0.1.3-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2024-01-12T22:38:54,109 Found link https://files.pythonhosted.org/packages/ab/26/5c78ed72341a5f6b18d9f84a1e9bc91739519c613d9051f732bf902f363d/pyft-0.1.3.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.3 2024-01-12T22:38:54,110 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/5f/76/cfcbbab37550bc51a7e8ea1bc59451ae618fb3eab2f20f7aa097bc615268/pyft-0.1.4-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2024-01-12T22:38:54,111 Found link https://files.pythonhosted.org/packages/c0/f0/c6f569449c4bbc95ba0281b2423d2c22fd957a7279f33b74ebd6aa94fefb/pyft-0.1.4.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.4 2024-01-12T22:38:54,112 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/b3/d8/e0bcc1d4dda64ccb39a697d7a2cf2f0afc1edddea2f97aa3b7351ada002d/pyft-0.1.5-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2024-01-12T22:38:54,113 Found link https://files.pythonhosted.org/packages/02/93/e6e05f3380af83b5c4b010925934d31dba5527b59d0f256aef8bd6b6b0d1/pyft-0.1.5.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.5 2024-01-12T22:38:54,113 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/7f/54/78d366d8c40d15e7e6ea673715003e9d3a1799bec389136fd3646cd2ee41/pyft-0.1.6-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2024-01-12T22:38:54,114 Found link https://files.pythonhosted.org/packages/a3/a5/862a667ea22060468fbb9a217ce8d25c4eda9ff6c64b79f5887e7d4123be/pyft-0.1.6.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.6 2024-01-12T22:38:54,115 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/ba/62/742233e64de296bde6230c31c8ac312c38ca40fa09f10cb36f8c3da3ba1b/pyft-0.1.7-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2024-01-12T22:38:54,116 Found link https://files.pythonhosted.org/packages/26/f9/bfc6b3b66cd901649cf13ea23361c69321e46ed3b1fe73981863371c14ea/pyft-0.1.7.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.7 2024-01-12T22:38:54,117 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/0b/b9/8bdacd074d2a6f38e3c2c3508cb1ddd1d1c00963e365f44c979bbd8c4df0/pyft-0.1.8-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2024-01-12T22:38:54,118 Found link https://files.pythonhosted.org/packages/ce/e7/c55525cdea4a7421cd6f08f16b85d094a3f95578f8d410ae6849e20ae1aa/pyft-0.1.8.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.8 2024-01-12T22:38:54,118 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/aa/81/12871893127d02cf1d8ad68c808878816523e038fbd8fc69ef390b2d3069/pyft-0.1.9-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2024-01-12T22:38:54,119 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/3a/6b/de60870d8a72ea0dd422eb38f9649692556599868f50cd8a62d5ce0c5e0c/pyft-0.1.9-cp39-cp39-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2024-01-12T22:38:54,120 Found link https://files.pythonhosted.org/packages/1e/7e/215d26ce7f6964e59e74252153d7c41d6ffa58f372bc2180bf9365f86a70/pyft-0.1.9.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.9 2024-01-12T22:38:54,120 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/98/34/486e083204140b4ee99d4eb669ffe4f9a52fe8a9fd0365a00b22d171b095/pyft-0.1.10-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2024-01-12T22:38:54,121 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/d0/9b/3f564e58355225004d47f2f0e666fbcf193520327cf208b7035d08228af2/pyft-0.1.10-cp39-cp39-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2024-01-12T22:38:54,122 Found link https://files.pythonhosted.org/packages/b7/e9/85ad227a8e926f6f737e40243d9c7e74aabefb51808874b8b1b61a3582ef/pyft-0.1.10.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.10 2024-01-12T22:38:54,123 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/b9/06/a0c265c3680e44912f4d34fb2fee4307042417f75fb23b50d34f2d4e23ca/pyft-0.1.11-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2024-01-12T22:38:54,124 Found link https://files.pythonhosted.org/packages/92/b0/bd729b1b3e99a2214e432386dd52d9d717b5559e8c95e1d4367ad0e10b19/pyft-0.1.11.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.11 2024-01-12T22:38:54,124 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/1c/64/03aa7eafce7c9338c3d250f2541056b85af54bf093e9a474b318fd3e040c/pyft-0.1.12-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2024-01-12T22:38:54,125 Found link https://files.pythonhosted.org/packages/e5/6b/4165062838966a41d55942ef90ffed85054c98b8caf22fd190f050c3cba5/pyft-0.1.12.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.12 2024-01-12T22:38:54,126 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyft/ 2024-01-12T22:38:54,127 Getting page https://www.piwheels.org/simple/pyft/ 2024-01-12T22:38:54,128 Found index url https://www.piwheels.org/simple/ 2024-01-12T22:38:54,285 Fetched page https://www.piwheels.org/simple/pyft/ as text/html 2024-01-12T22:38:54,286 Skipping link: not a file: https://www.piwheels.org/simple/pyft/ 2024-01-12T22:38:54,286 Skipping link: not a file: https://pypi.org/simple/pyft/ 2024-01-12T22:38:54,306 Given no hashes to check 1 links for project 'pyft': discarding no candidates 2024-01-12T22:38:54,324 Collecting pyft==0.1.12 2024-01-12T22:38:54,326 Created temporary directory: /tmp/pip-unpack-p1_l3r1_ 2024-01-12T22:38:54,539 Downloading pyft-0.1.12.tar.gz (8.5 MB) 2024-01-12T22:38:56,911 Added pyft==0.1.12 from https://files.pythonhosted.org/packages/e5/6b/4165062838966a41d55942ef90ffed85054c98b8caf22fd190f050c3cba5/pyft-0.1.12.tar.gz to build tracker '/tmp/pip-build-tracker-lgcp6lnk' 2024-01-12T22:38:56,915 Created temporary directory: /tmp/pip-build-env-c4pykaeo 2024-01-12T22:38:56,919 Installing build dependencies: started 2024-01-12T22:38:56,921 Running command pip subprocess to install build dependencies 2024-01-12T22:38:58,040 Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-01-12T22:38:58,522 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-12T22:38:59,681 Collecting maturin<2.0,>=1.1 2024-01-12T22:38:59,700 Using cached https://www.piwheels.org/simple/maturin/maturin-1.4.0-cp311-cp311-linux_armv7l.whl (6.3 MB) 2024-01-12T22:39:02,150 Installing collected packages: maturin 2024-01-12T22:39:02,687 Successfully installed maturin-1.4.0 2024-01-12T22:39:02,942 [notice] A new release of pip is available: 23.3.1 -> 23.3.2 2024-01-12T22:39:02,943 [notice] To update, run: python3 -m pip install --upgrade pip 2024-01-12T22:39:03,211 Installing build dependencies: finished with status 'done' 2024-01-12T22:39:03,215 Getting requirements to build wheel: started 2024-01-12T22:39:03,216 Running command Getting requirements to build wheel 2024-01-12T22:39:03,413 Getting requirements to build wheel: finished with status 'done' 2024-01-12T22:39:03,416 Created temporary directory: /tmp/pip-modern-metadata-vumuyxlb 2024-01-12T22:39:03,419 Preparing metadata (pyproject.toml): started 2024-01-12T22:39:03,420 Running command Preparing metadata (pyproject.toml) 2024-01-12T22:39:04,074 Updating crates.io index 2024-01-12T22:39:09,340 Downloading crates ... 2024-01-12T22:39:10,977 Downloaded core_affinity v0.8.1 2024-01-12T22:39:11,003 Downloaded curl-sys v0.4.70+curl-8.5.0 2024-01-12T22:39:16,806 Downloaded linear-map v1.2.0 2024-01-12T22:39:16,834 Downloaded clap_builder v4.4.15 2024-01-12T22:39:16,946 Downloaded hts-sys v2.1.1 2024-01-12T22:39:18,284 Downloaded libdeflate-sys v0.12.0 2024-01-12T22:39:18,436 Downloaded clap v4.4.15 2024-01-12T22:39:18,590 Downloaded niffler v2.5.0 2024-01-12T22:39:18,634 Downloaded libz-sys v1.1.14 2024-01-12T22:39:19,816 Downloaded libdeflater v0.12.0 2024-01-12T22:39:19,850 Downloaded gbdt v0.1.2 2024-01-12T22:39:19,888 Downloaded fs-utils v1.1.4 2024-01-12T22:39:19,900 Downloaded editdistancek v1.0.2 2024-01-12T22:39:19,916 Downloaded clap_mangen v0.2.17 2024-01-12T22:39:19,933 Downloaded bio v1.5.0 2024-01-12T22:39:20,072 Downloaded gzp v0.11.3 2024-01-12T22:39:20,308 Downloaded console v0.15.8 2024-01-12T22:39:20,357 Downloaded clap_complete v4.4.6 2024-01-12T22:39:20,403 Downloaded multimap v0.9.1 2024-01-12T22:39:20,422 Downloaded enum-map-derive v0.17.0 2024-01-12T22:39:20,443 Downloaded enum-map v2.7.3 2024-01-12T22:39:20,474 Downloaded crossbeam-deque v0.8.5 2024-01-12T22:39:20,535 Downloaded crossbeam-epoch v0.9.18 2024-01-12T22:39:20,575 Downloaded roff v0.2.1 2024-01-12T22:39:20,588 Downloaded quick-error v1.2.3 2024-01-12T22:39:20,607 Downloaded serde_yaml v0.9.30 2024-01-12T22:39:20,666 Downloaded rust-htslib v0.43.1 2024-01-12T22:39:20,731 Downloaded ordered-float v3.9.2 2024-01-12T22:39:20,752 Downloaded lzma-sys v0.1.20 2024-01-12T22:39:21,354 Downloaded ieee754 v0.2.6 2024-01-12T22:39:21,489 🔗 Found pyo3 bindings 2024-01-12T22:39:21,766 🐍 Found CPython 3.11 at /usr/bin/python3 2024-01-12T22:39:21,766 📡 Using build options features from pyproject.toml 2024-01-12T22:39:21,778 pyft-0.1.12.dist-info 2024-01-12T22:39:21,778 Checking for Rust toolchain.... 2024-01-12T22:39:21,779 Running `maturin pep517 write-dist-info --metadata-directory /tmp/pip-modern-metadata-vumuyxlb --interpreter /usr/bin/python3` 2024-01-12T22:39:21,802 Preparing metadata (pyproject.toml): finished with status 'done' 2024-01-12T22:39:21,806 Source in /tmp/pip-wheel-nwv2k80t/pyft_fea976a22c404a779c2bf7d800dc88fd has version 0.1.12, which satisfies requirement pyft==0.1.12 from https://files.pythonhosted.org/packages/e5/6b/4165062838966a41d55942ef90ffed85054c98b8caf22fd190f050c3cba5/pyft-0.1.12.tar.gz 2024-01-12T22:39:21,807 Removed pyft==0.1.12 from https://files.pythonhosted.org/packages/e5/6b/4165062838966a41d55942ef90ffed85054c98b8caf22fd190f050c3cba5/pyft-0.1.12.tar.gz from build tracker '/tmp/pip-build-tracker-lgcp6lnk' 2024-01-12T22:39:21,811 Created temporary directory: /tmp/pip-unpack-to6ftbxb 2024-01-12T22:39:21,812 Created temporary directory: /tmp/pip-unpack-hkz0bn4z 2024-01-12T22:39:21,814 Building wheels for collected packages: pyft 2024-01-12T22:39:21,818 Created temporary directory: /tmp/pip-wheel-pjrh04qq 2024-01-12T22:39:21,819 Destination directory: /tmp/pip-wheel-pjrh04qq 2024-01-12T22:39:21,821 Building wheel for pyft (pyproject.toml): started 2024-01-12T22:39:21,822 Running command Building wheel for pyft (pyproject.toml) 2024-01-12T22:39:21,988 Running `maturin pep517 build-wheel -i /usr/bin/python3 --compatibility off` 2024-01-12T22:39:22,918 🔗 Found pyo3 bindings 2024-01-12T22:39:23,188 🐍 Found CPython 3.11 at /usr/bin/python3 2024-01-12T22:39:23,188 📡 Using build options features from pyproject.toml 2024-01-12T22:39:24,314 Compiling libc v0.2.152 2024-01-12T22:39:24,314 Compiling proc-macro2 v1.0.76 2024-01-12T22:39:24,315 Compiling unicode-ident v1.0.12 2024-01-12T22:39:24,316 Compiling autocfg v1.1.0 2024-01-12T22:39:24,800 Compiling pkg-config v0.3.28 2024-01-12T22:39:30,475 Compiling quote v1.0.35 2024-01-12T22:39:33,272 Compiling syn v2.0.48 2024-01-12T22:39:33,570 Compiling syn v1.0.109 2024-01-12T22:39:35,196 Compiling jobserver v0.1.27 2024-01-12T22:39:35,510 Compiling cfg-if v1.0.0 2024-01-12T22:39:36,196 Compiling libm v0.2.8 2024-01-12T22:39:37,471 Compiling cc v1.0.83 2024-01-12T22:39:38,919 Compiling num-traits v0.2.17 2024-01-12T22:39:40,144 Compiling vcpkg v0.2.15 2024-01-12T22:39:51,769 Compiling cmake v0.1.50 2024-01-12T22:40:02,886 Compiling getrandom v0.2.12 2024-01-12T22:40:04,533 Compiling memchr v2.7.1 2024-01-12T22:40:08,153 Compiling libz-sys v1.1.14 2024-01-12T22:40:11,011 Compiling target-lexicon v0.12.13 2024-01-12T22:40:12,698 Compiling rustix v0.38.28 2024-01-12T22:40:15,021 Compiling serde v1.0.195 2024-01-12T22:40:16,916 Compiling bitflags v2.4.1 2024-01-12T22:40:19,050 Compiling linux-raw-sys v0.4.12 2024-01-12T22:40:35,978 Compiling serde_derive v1.0.195 2024-01-12T22:40:40,728 Compiling aho-corasick v1.1.2 2024-01-12T22:41:10,559 Compiling openssl-src v300.2.1+3.2.0 2024-01-12T22:41:12,466 Compiling version_check v0.9.4 2024-01-12T22:41:15,117 Compiling regex-syntax v0.8.2 2024-01-12T22:41:16,887 Compiling heck v0.4.1 2024-01-12T22:41:18,492 Compiling openssl-sys v0.9.98 2024-01-12T22:41:22,840 Compiling pyo3-build-config v0.19.2 2024-01-12T22:41:24,001 Compiling rand_core v0.6.4 2024-01-12T22:41:25,869 Compiling lock_api v0.4.11 2024-01-12T22:41:27,140 Compiling num-integer v0.1.45 2024-01-12T22:41:28,349 Compiling lazy_static v1.4.0 2024-01-12T22:41:28,607 Compiling ppv-lite86 v0.2.17 2024-01-12T22:41:30,522 Compiling crossbeam-utils v0.8.19 2024-01-12T22:41:31,458 Compiling thiserror v1.0.56 2024-01-12T22:41:32,385 Compiling rand_chacha v0.3.1 2024-01-12T22:41:33,837 Compiling regex-automata v0.4.3 2024-01-12T22:41:55,228 Compiling thiserror-impl v1.0.56 2024-01-12T22:42:08,386 Compiling regex v1.10.2 2024-01-12T22:42:24,950 Compiling matrixmultiply v0.3.8 2024-01-12T22:42:26,081 Compiling fnv v1.0.7 2024-01-12T22:42:26,295 Compiling semver v0.1.20 2024-01-12T22:42:28,775 Compiling bytemuck v1.14.0 2024-01-12T22:42:30,452 Compiling scopeguard v1.2.0 2024-01-12T22:42:30,764 Compiling once_cell v1.19.0 2024-01-12T22:42:32,282 Compiling rustversion v1.0.14 2024-01-12T22:42:34,516 Compiling ident_case v1.0.1 2024-01-12T22:42:34,887 Compiling paste v1.0.14 2024-01-12T22:42:36,509 Compiling utf8parse v0.2.1 2024-01-12T22:42:36,935 Compiling strsim v0.10.0 2024-01-12T22:42:39,481 Compiling darling_core v0.14.4 2024-01-12T22:42:40,420 Compiling anstyle-parse v0.2.3 2024-01-12T22:42:52,979 Compiling safe_arch v0.7.1 2024-01-12T22:42:53,139 Compiling rustc_version v0.1.7 2024-01-12T22:42:59,900 Compiling rand v0.8.5 2024-01-12T22:43:12,100 Compiling proc-macro-error-attr v1.0.4 2024-01-12T22:43:13,137 Compiling num-complex v0.4.4 2024-01-12T22:43:15,058 Compiling lzma-sys v0.1.20 2024-01-12T22:43:17,819 Compiling bzip2-sys v0.1.11+1.0.8 2024-01-12T22:43:18,888 Compiling curl-sys v0.4.70+curl-8.5.0 2024-01-12T22:43:19,762 Compiling num-rational v0.4.1 2024-01-12T22:43:20,893 Compiling anstyle-query v1.0.2 2024-01-12T22:43:21,209 Compiling quick-error v1.2.3 2024-01-12T22:43:21,500 Compiling typenum v1.17.0 2024-01-12T22:43:21,911 Compiling itoa v1.0.10 2024-01-12T22:43:22,711 Compiling anstyle v1.0.4 2024-01-12T22:43:25,135 Compiling ryu v1.0.16 2024-01-12T22:43:25,898 Compiling rawpointer v0.2.1 2024-01-12T22:43:26,145 Compiling crc32fast v1.3.2 2024-01-12T22:43:27,650 Compiling colorchoice v1.0.0 2024-01-12T22:43:27,718 Compiling either v1.9.0 2024-01-12T22:43:28,018 Compiling tinyvec_macros v0.1.1 2024-01-12T22:43:28,157 Compiling tinyvec v1.6.0 2024-01-12T22:43:29,121 Compiling anstream v0.6.5 2024-01-12T22:43:37,682 Compiling fs-utils v1.1.4 2024-01-12T22:44:01,393 Compiling crossbeam-epoch v0.9.18 2024-01-12T22:44:01,528 Compiling darling_macro v0.14.4 2024-01-12T22:44:03,969 Compiling newtype_derive v0.1.6 2024-01-12T22:44:05,121 Compiling wide v0.7.13 2024-01-12T22:44:12,132 Compiling proc-macro-error v1.0.4 2024-01-12T22:44:12,617 Compiling terminal_size v0.3.0 2024-01-12T22:44:13,316 Compiling approx v0.5.1 2024-01-12T22:44:13,374 Compiling libdeflate-sys v0.12.0 2024-01-12T22:44:14,269 Compiling feature-probe v0.1.1 2024-01-12T22:44:15,096 Compiling adler v1.0.2 2024-01-12T22:44:15,325 Compiling rayon-core v1.12.0 2024-01-12T22:44:17,789 Compiling hashbrown v0.14.3 2024-01-12T22:44:18,143 Compiling clap_lex v0.6.0 2024-01-12T22:44:21,385 Compiling byteorder v1.5.0 2024-01-12T22:44:23,833 Compiling glob v0.3.1 2024-01-12T22:44:27,557 Compiling equivalent v1.0.1 2024-01-12T22:44:27,752 Compiling indexmap v2.1.0 2024-01-12T22:44:34,262 Compiling hts-sys v2.1.1 2024-01-12T22:44:34,276 Compiling clap_builder v4.4.15 2024-01-12T22:44:35,580 Compiling simba v0.6.0 2024-01-12T22:44:37,228 Compiling miniz_oxide v0.7.1 2024-01-12T22:44:53,896 Compiling bv v0.11.1 2024-01-12T22:44:55,932 Compiling strum_macros v0.25.3 2024-01-12T22:45:17,179 Compiling darling v0.14.4 2024-01-12T22:45:17,480 Compiling crossbeam-deque v0.8.5 2024-01-12T22:45:44,718 Compiling unicode-normalization v0.1.22 2024-01-12T22:45:51,331 Compiling rand_distr v0.4.3 2024-01-12T22:45:56,035 Compiling pyo3-ffi v0.19.2 2024-01-12T22:45:57,298 Compiling clap_derive v4.4.7 2024-01-12T22:45:58,029 Compiling nalgebra-macros v0.1.0 2024-01-12T22:46:05,873 Compiling derive-new v0.5.9 2024-01-12T22:46:16,444 Compiling pin-project-internal v1.1.3 2024-01-12T22:46:26,768 Compiling serde_json v1.0.111 2024-01-12T22:46:28,124 Compiling parking_lot_core v0.9.9 2024-01-12T22:46:29,429 Compiling percent-encoding v2.3.1 2024-01-12T22:46:29,851 Compiling portable-atomic v1.6.0 2024-01-12T22:46:31,578 Compiling anyhow v1.0.79 2024-01-12T22:46:33,241 Compiling unicode-bidi v0.3.14 2024-01-12T22:46:33,785 Compiling form_urlencoded v1.2.1 2024-01-12T22:46:35,762 Compiling pin-project v1.1.3 2024-01-12T22:46:36,051 Compiling clap v4.4.15 2024-01-12T22:46:36,278 Compiling bio-types v1.0.1 2024-01-12T22:46:46,655 Compiling idna v0.5.0 2024-01-12T22:46:47,393 Compiling nalgebra v0.29.0 2024-01-12T22:47:01,617 Compiling flate2 v1.0.28 2024-01-12T22:47:09,342 Compiling derive_builder_core v0.12.0 2024-01-12T22:47:20,493 Compiling spin v0.9.8 2024-01-12T22:47:22,104 Compiling enum-map-derive v0.17.0 2024-01-12T22:47:23,729 Compiling csv-core v0.1.11 2024-01-12T22:47:26,623 Compiling nanorand v0.7.0 2024-01-12T22:47:28,049 Compiling num_cpus v1.16.0 2024-01-12T22:47:29,371 Compiling memoffset v0.9.0 2024-01-12T22:47:30,479 Compiling fixedbitset v0.4.2 2024-01-12T22:47:33,257 Compiling futures-sink v0.3.30 2024-01-12T22:47:33,546 Compiling smallvec v1.11.2 2024-01-12T22:47:35,656 Compiling log v0.4.20 2024-01-12T22:47:36,623 Compiling unicode-width v0.1.11 2024-01-12T22:47:37,012 Compiling bit-vec v0.6.3 2024-01-12T22:47:38,277 Compiling humantime v2.1.0 2024-01-12T22:47:39,057 Compiling futures-core v0.3.30 2024-01-12T22:47:39,661 Compiling termcolor v1.4.1 2024-01-12T22:47:42,022 Compiling custom_derive v0.1.7 2024-01-12T22:47:42,208 Compiling flume v0.10.14 2024-01-12T22:47:45,648 Compiling bit-set v0.5.3 2024-01-12T22:47:45,970 Compiling console v0.15.8 2024-01-12T22:47:49,853 Compiling petgraph v0.6.4 2024-01-12T22:48:02,360 Compiling core_affinity v0.8.1 2024-01-12T22:48:03,209 Compiling enum-map v2.7.3 2024-01-12T22:48:04,667 Compiling csv v1.3.0 2024-01-12T22:48:15,584 Compiling derive_builder_macro v0.12.0 2024-01-12T22:48:18,942 Compiling rayon v1.8.0 2024-01-12T22:48:23,547 Compiling getset v0.1.2 2024-01-12T22:48:29,192 Compiling url v2.5.0 2024-01-12T22:48:31,668 Compiling statrs v0.16.0 2024-01-12T22:49:02,458 Compiling fxhash v0.2.1 2024-01-12T22:49:03,101 Compiling ndarray v0.15.6 2024-01-12T22:49:08,370 Compiling itertools v0.11.0 2024-01-12T22:49:19,607 Compiling pyo3 v0.19.2 2024-01-12T22:49:21,004 Compiling vec_map v0.8.2 2024-01-12T22:49:22,478 Compiling multimap v0.9.1 2024-01-12T22:49:23,834 Compiling pyo3-macros-backend v0.19.2 2024-01-12T22:49:25,680 Compiling itertools-num v0.1.3 2024-01-12T22:49:26,060 Compiling ordered-float v3.9.2 2024-01-12T22:49:30,634 Compiling atty v0.2.14 2024-01-12T22:49:30,925 Compiling fibertools-rs v0.3.7 (/tmp/pip-wheel-nwv2k80t/pyft_fea976a22c404a779c2bf7d800dc88fd) 2024-01-12T22:49:32,588 Compiling ieee754 v0.2.6 2024-01-12T22:49:33,268 Compiling linear-map v1.2.0 2024-01-12T22:49:34,829 Compiling editdistancek v1.0.2 2024-01-12T22:49:35,830 Compiling roff v0.2.1 2024-01-12T22:49:39,858 Compiling number_prefix v0.4.0 2024-01-12T22:49:40,535 Compiling bytecount v0.6.7 2024-01-12T22:49:41,330 Compiling bytes v1.5.0 2024-01-12T22:49:50,030 Compiling strum v0.25.0 2024-01-12T22:49:50,446 Compiling unsafe-libyaml v0.2.10 2024-01-12T22:49:50,943 Compiling triple_accel v0.4.0 2024-01-12T22:49:59,950 Compiling fastrand v2.0.1 2024-01-12T22:50:01,709 Compiling pyo3-macros v0.19.2 2024-01-12T22:50:02,628 Compiling tempfile v3.9.0 2024-01-12T22:50:06,475 Compiling serde_yaml v0.9.30 2024-01-12T22:50:11,703 Compiling bio v1.5.0 2024-01-12T22:50:18,159 Compiling indicatif v0.17.7 2024-01-12T22:50:57,285 Compiling clap_mangen v0.2.17 2024-01-12T22:50:58,272 Compiling env_logger v0.9.3 2024-01-12T22:51:10,536 Compiling gbdt v0.1.2 2024-01-12T22:51:18,869 Compiling derive_builder v0.12.0 2024-01-12T22:51:19,390 Compiling parking_lot v0.12.1 2024-01-12T22:51:28,333 Compiling niffler v2.5.0 2024-01-12T22:51:47,222 Compiling clap_complete v4.4.6 2024-01-12T22:52:04,907 Compiling itertools v0.10.5 2024-01-12T22:52:21,665 Compiling colored v2.1.0 2024-01-12T22:52:22,299 Compiling is-terminal v0.4.10 2024-01-12T22:52:22,516 Compiling indoc v1.0.9 2024-01-12T22:52:26,649 Compiling unindent v0.1.11 2024-01-12T22:52:28,651 Compiling env_logger v0.10.1 2024-01-12T22:53:26,840 Compiling libdeflater v0.12.0 2024-01-12T22:53:27,839 Compiling gzp v0.11.3 2024-01-12T22:56:33,722 Compiling rust-htslib v0.43.1 2024-01-12T22:56:35,443 error[E0308]: mismatched types 2024-01-12T22:56:35,444 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.43.1/src/bam/record.rs:154:16 2024-01-12T22:56:35,445 | 2024-01-12T22:56:35,445 154 | l: sam_copy.len() as u64, 2024-01-12T22:56:35,446 | ^^^^^^^^^^^^^^^^^^^^^ expected `u32`, found `u64` 2024-01-12T22:56:35,452 error[E0308]: mismatched types 2024-01-12T22:56:35,452 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.43.1/src/bam/record.rs:155:16 2024-01-12T22:56:35,453 | 2024-01-12T22:56:35,454 155 | m: sam_copy.len() as u64, 2024-01-12T22:56:35,454 | ^^^^^^^^^^^^^^^^^^^^^ expected `u32`, found `u64` 2024-01-12T22:56:35,984 error[E0308]: mismatched types 2024-01-12T22:56:35,985 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.43.1/src/bam/mod.rs:1128:29 2024-01-12T22:56:35,985 | 2024-01-12T22:56:35,986 1128 | (*rec).l_text = l_text as u64; 2024-01-12T22:56:35,987 | ------------- ^^^^^^^^^^^^^ expected `u32`, found `u64` 2024-01-12T22:56:35,988 | | 2024-01-12T22:56:35,988 | expected due to the type of this binding 2024-01-12T22:56:36,032 error[E0308]: mismatched types 2024-01-12T22:56:36,033 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.43.1/src/bam/mod.rs:1393:45 2024-01-12T22:56:36,034 | 2024-01-12T22:56:36,035 1393 | let rec = htslib::sam_hdr_parse((l_text + 1) as u64, text as *const c_char); 2024-01-12T22:56:36,035 | --------------------- ^^^^^^^^^^^^^^^^^^^ expected `u32`, found `u64` 2024-01-12T22:56:36,036 | | 2024-01-12T22:56:36,037 | arguments to this function are incorrect 2024-01-12T22:56:36,037 | 2024-01-12T22:56:36,038 note: function defined here 2024-01-12T22:56:36,038 --> /tmp/pip-wheel-nwv2k80t/pyft_fea976a22c404a779c2bf7d800dc88fd/py-ft/target/release/build/hts-sys-3cad9f14c7e3bfea/out/bindings.rs:8520:12 2024-01-12T22:56:36,039 | 2024-01-12T22:56:36,039 8520 | pub fn sam_hdr_parse(l_text: size_t, text: *const ::std::os::raw::c_char) -> *mut sam_hdr_t; 2024-01-12T22:56:36,040 | ^^^^^^^^^^^^^ 2024-01-12T22:56:36,041 help: you can convert a `u64` to a `u32` and panic if the converted value doesn't fit 2024-01-12T22:56:36,041 | 2024-01-12T22:56:36,042 1393 | let rec = htslib::sam_hdr_parse(((l_text + 1) as u64).try_into().unwrap(), text as *const c_char); 2024-01-12T22:56:36,043 | + +++++++++++++++++++++ 2024-01-12T22:56:36,044 error[E0308]: mismatched types 2024-01-12T22:56:36,045 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.43.1/src/bam/mod.rs:1395:29 2024-01-12T22:56:36,046 | 2024-01-12T22:56:36,047 1395 | (*rec).l_text = l_text as u64; 2024-01-12T22:56:36,047 | ------------- ^^^^^^^^^^^^^ expected `u32`, found `u64` 2024-01-12T22:56:36,048 | | 2024-01-12T22:56:36,048 | expected due to the type of this binding 2024-01-12T22:56:36,282 error[E0308]: mismatched types 2024-01-12T22:56:36,283 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.43.1/src/bcf/record.rs:1011:48 2024-01-12T22:56:36,283 | 2024-01-12T22:56:36,284 1011 | let rm_set = unsafe { htslib::kbs_init(remove.len() as u64) }; 2024-01-12T22:56:36,285 | ---------------- ^^^^^^^^^^^^^^^^^^^ expected `u32`, found `u64` 2024-01-12T22:56:36,285 | | 2024-01-12T22:56:36,286 | arguments to this function are incorrect 2024-01-12T22:56:36,286 | 2024-01-12T22:56:36,287 note: function defined here 2024-01-12T22:56:36,287 --> /tmp/pip-wheel-nwv2k80t/pyft_fea976a22c404a779c2bf7d800dc88fd/py-ft/target/release/build/hts-sys-3cad9f14c7e3bfea/out/bindings.rs:11642:12 2024-01-12T22:56:36,288 | 2024-01-12T22:56:36,289 11642 | pub fn kbs_init(ni: size_t) -> *mut kbitset_t; 2024-01-12T22:56:36,289 | ^^^^^^^^ 2024-01-12T22:56:36,290 help: you can convert a `u64` to a `u32` and panic if the converted value doesn't fit 2024-01-12T22:56:36,290 | 2024-01-12T22:56:36,291 1011 | let rm_set = unsafe { htslib::kbs_init((remove.len() as u64).try_into().unwrap()) }; 2024-01-12T22:56:36,292 | + +++++++++++++++++++++ 2024-01-12T22:56:36,512 error[E0308]: mismatched types 2024-01-12T22:56:36,513 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.43.1/src/bgzf/mod.rs:118:17 2024-01-12T22:56:36,513 | 2024-01-12T22:56:36,514 115 | htslib::bgzf_read( 2024-01-12T22:56:36,515 | ----------------- arguments to this function are incorrect 2024-01-12T22:56:36,516 ... 2024-01-12T22:56:36,516 118 | buf.len() as u64, 2024-01-12T22:56:36,517 | ^^^^^^^^^^^^^^^^ expected `u32`, found `u64` 2024-01-12T22:56:36,518 | 2024-01-12T22:56:36,519 note: function defined here 2024-01-12T22:56:36,519 --> /tmp/pip-wheel-nwv2k80t/pyft_fea976a22c404a779c2bf7d800dc88fd/py-ft/target/release/build/hts-sys-3cad9f14c7e3bfea/out/bindings.rs:10097:12 2024-01-12T22:56:36,520 | 2024-01-12T22:56:36,521 10097 | pub fn bgzf_read(fp: *mut BGZF, data: *mut ::std::os::raw::c_void, length: size_t) -> ssize_t; 2024-01-12T22:56:36,521 | ^^^^^^^^^ 2024-01-12T22:56:36,522 help: you can convert a `u64` to a `u32` and panic if the converted value doesn't fit 2024-01-12T22:56:36,523 | 2024-01-12T22:56:36,523 118 | (buf.len() as u64).try_into().unwrap(), 2024-01-12T22:56:36,524 | + +++++++++++++++++++++ 2024-01-12T22:56:36,545 error[E0308]: mismatched types 2024-01-12T22:56:36,546 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.43.1/src/bgzf/mod.rs:264:17 2024-01-12T22:56:36,546 | 2024-01-12T22:56:36,547 261 | htslib::bgzf_write( 2024-01-12T22:56:36,548 | ------------------ arguments to this function are incorrect 2024-01-12T22:56:36,548 ... 2024-01-12T22:56:36,549 264 | buf.len() as u64, 2024-01-12T22:56:36,550 | ^^^^^^^^^^^^^^^^ expected `u32`, found `u64` 2024-01-12T22:56:36,550 | 2024-01-12T22:56:36,551 note: function defined here 2024-01-12T22:56:36,552 --> /tmp/pip-wheel-nwv2k80t/pyft_fea976a22c404a779c2bf7d800dc88fd/py-ft/target/release/build/hts-sys-3cad9f14c7e3bfea/out/bindings.rs:10100:12 2024-01-12T22:56:36,553 | 2024-01-12T22:56:36,554 10100 | pub fn bgzf_write( 2024-01-12T22:56:36,554 | ^^^^^^^^^^ 2024-01-12T22:56:36,555 help: you can convert a `u64` to a `u32` and panic if the converted value doesn't fit 2024-01-12T22:56:36,555 | 2024-01-12T22:56:36,556 264 | (buf.len() as u64).try_into().unwrap(), 2024-01-12T22:56:36,556 | + +++++++++++++++++++++ 2024-01-12T22:56:36,721 For more information about this error, try `rustc --explain E0308`. 2024-01-12T22:56:36,734 error: could not compile `rust-htslib` (lib) due to 8 previous errors 2024-01-12T22:56:36,759 💥 maturin failed 2024-01-12T22:56:36,760 Caused by: Failed to build a native library through cargo 2024-01-12T22:56:36,761 Caused by: Cargo build finished with "exit status: 101": `env -u CARGO PYO3_ENVIRONMENT_SIGNATURE="cpython-3.11-64bit" PYO3_PYTHON="/usr/bin/python3" PYTHON_SYS_EXECUTABLE="/usr/bin/python3" "cargo" "rustc" "--features" "pyo3/extension-module" "--message-format" "json-render-diagnostics" "--manifest-path" "/tmp/pip-wheel-nwv2k80t/pyft_fea976a22c404a779c2bf7d800dc88fd/py-ft/Cargo.toml" "--release" "--lib"` 2024-01-12T22:56:36,762 Error: command ['maturin', 'pep517', 'build-wheel', '-i', '/usr/bin/python3', '--compatibility', 'off'] returned non-zero exit status 1 2024-01-12T22:56:36,785 ERROR: Building wheel for pyft (pyproject.toml) exited with 1 2024-01-12T22:56:36,798 [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/local/lib/python3.11/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmpfu9o3gwo[/] 2024-01-12T22:56:36,799 [bold magenta]cwd[/]: /tmp/pip-wheel-nwv2k80t/pyft_fea976a22c404a779c2bf7d800dc88fd 2024-01-12T22:56:36,800 Building wheel for pyft (pyproject.toml): finished with status 'error' 2024-01-12T22:56:36,802 ERROR: Failed building wheel for pyft 2024-01-12T22:56:36,805 Failed to build pyft 2024-01-12T22:56:36,806 ERROR: Failed to build one or more wheels 2024-01-12T22:56:36,807 Exception information: 2024-01-12T22:56:36,807 Traceback (most recent call last): 2024-01-12T22:56:36,807 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2024-01-12T22:56:36,807 status = run_func(*args) 2024-01-12T22:56:36,807 ^^^^^^^^^^^^^^^ 2024-01-12T22:56:36,807 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 245, in wrapper 2024-01-12T22:56:36,807 return func(self, options, args) 2024-01-12T22:56:36,807 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-01-12T22:56:36,807 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run 2024-01-12T22:56:36,807 raise CommandError("Failed to build one or more wheels") 2024-01-12T22:56:36,807 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2024-01-12T22:56:36,812 Removed build tracker: '/tmp/pip-build-tracker-lgcp6lnk'