2024-01-15T14:00:10,082 Created temporary directory: /tmp/pip-build-tracker-eatbzrza 2024-01-15T14:00:10,084 Initialized build tracking at /tmp/pip-build-tracker-eatbzrza 2024-01-15T14:00:10,084 Created build tracker: /tmp/pip-build-tracker-eatbzrza 2024-01-15T14:00:10,085 Entered build tracker: /tmp/pip-build-tracker-eatbzrza 2024-01-15T14:00:10,086 Created temporary directory: /tmp/pip-wheel-j7ov7tuv 2024-01-15T14:00:10,089 Created temporary directory: /tmp/pip-ephem-wheel-cache-sc1ur778 2024-01-15T14:00:10,112 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-15T14:00:10,115 2 location(s) to search for versions of brainglobe-workflows: 2024-01-15T14:00:10,115 * https://pypi.org/simple/brainglobe-workflows/ 2024-01-15T14:00:10,115 * https://www.piwheels.org/simple/brainglobe-workflows/ 2024-01-15T14:00:10,116 Fetching project page and analyzing links: https://pypi.org/simple/brainglobe-workflows/ 2024-01-15T14:00:10,117 Getting page https://pypi.org/simple/brainglobe-workflows/ 2024-01-15T14:00:10,118 Found index url https://pypi.org/simple/ 2024-01-15T14:00:10,336 Fetched page https://pypi.org/simple/brainglobe-workflows/ as application/vnd.pypi.simple.v1+json 2024-01-15T14:00:10,339 Found link https://files.pythonhosted.org/packages/86/ff/7475753a7ca5ced322da02ae703996835522e454697fda6be04040de6f3b/brainglobe-workflows-1.0.0.tar.gz (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9), version: 1.0.0 2024-01-15T14:00:10,339 Skipping link: No binaries permitted for brainglobe-workflows: https://files.pythonhosted.org/packages/fd/3d/3ba19433653c5f8e4e1fefb3453ff6c6fb161c65970589784ad8d493dfc4/brainglobe_workflows-1.0.0-py3-none-any.whl (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9) 2024-01-15T14:00:10,340 Found link https://files.pythonhosted.org/packages/2c/2c/63316da6fb3b7dea22844058c8c2afe92c387a0039f8ed964336584dfd69/brainglobe-workflows-1.1.0.tar.gz (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9), version: 1.1.0 2024-01-15T14:00:10,341 Skipping link: No binaries permitted for brainglobe-workflows: https://files.pythonhosted.org/packages/d4/e7/ce8124540814aceaad9c50c8976531f4e3d9e648ecedf4f5bfe4646b777a/brainglobe_workflows-1.1.0-py3-none-any.whl (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9) 2024-01-15T14:00:10,342 Found link https://files.pythonhosted.org/packages/db/a3/fe90d65876b53bee6382de11980cd0dc8897c7a39ac9451e1a85063beb46/brainglobe-workflows-1.1.2.tar.gz (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9), version: 1.1.2 2024-01-15T14:00:10,343 Skipping link: No binaries permitted for brainglobe-workflows: https://files.pythonhosted.org/packages/f5/b6/659b4528b8caa5c402c7260961af18f176fecebacc610f812aaf1a792554/brainglobe_workflows-1.1.2-py3-none-any.whl (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9) 2024-01-15T14:00:10,344 Fetching project page and analyzing links: https://www.piwheels.org/simple/brainglobe-workflows/ 2024-01-15T14:00:10,345 Getting page https://www.piwheels.org/simple/brainglobe-workflows/ 2024-01-15T14:00:10,346 Found index url https://www.piwheels.org/simple/ 2024-01-15T14:00:10,512 Fetched page https://www.piwheels.org/simple/brainglobe-workflows/ as text/html 2024-01-15T14:00:10,514 Skipping link: No binaries permitted for brainglobe-workflows: https://www.piwheels.org/simple/brainglobe-workflows/brainglobe_workflows-1.1.0-py3-none-any.whl#sha256=a51e28508b22a8a3a84fbad104aff0ccf7ec652c7c6a612c7d55b80c3d5d5b31 (from https://www.piwheels.org/simple/brainglobe-workflows/) (requires-python:>=3.9) 2024-01-15T14:00:10,514 Skipping link: No binaries permitted for brainglobe-workflows: https://www.piwheels.org/simple/brainglobe-workflows/brainglobe_workflows-1.0.0-py3-none-any.whl#sha256=9875e2cf8c7d6256d90d8026fec7102f19d325dd8480202f52100052a04dfcaf (from https://www.piwheels.org/simple/brainglobe-workflows/) (requires-python:>=3.9) 2024-01-15T14:00:10,515 Skipping link: not a file: https://www.piwheels.org/simple/brainglobe-workflows/ 2024-01-15T14:00:10,516 Skipping link: not a file: https://pypi.org/simple/brainglobe-workflows/ 2024-01-15T14:00:10,536 Given no hashes to check 1 links for project 'brainglobe-workflows': discarding no candidates 2024-01-15T14:00:10,556 Collecting brainglobe-workflows==1.1.2 2024-01-15T14:00:10,558 Created temporary directory: /tmp/pip-unpack-jix3m5aj 2024-01-15T14:00:10,793 Downloading brainglobe-workflows-1.1.2.tar.gz (37 kB) 2024-01-15T14:00:10,892 Added brainglobe-workflows==1.1.2 from https://files.pythonhosted.org/packages/db/a3/fe90d65876b53bee6382de11980cd0dc8897c7a39ac9451e1a85063beb46/brainglobe-workflows-1.1.2.tar.gz to build tracker '/tmp/pip-build-tracker-eatbzrza' 2024-01-15T14:00:10,900 Created temporary directory: /tmp/pip-build-env-kwk2ji29 2024-01-15T14:00:10,904 Installing build dependencies: started 2024-01-15T14:00:10,906 Running command pip subprocess to install build dependencies 2024-01-15T14:00:12,052 Using pip 23.3.1 from /home/piwheels/.local/lib/python3.11/site-packages/pip (python 3.11) 2024-01-15T14:00:12,596 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-15T14:00:14,048 Collecting setuptools>=45 2024-01-15T14:00:14,063 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.0.3-py3-none-any.whl (819 kB) 2024-01-15T14:00:14,290 Collecting wheel 2024-01-15T14:00:14,303 Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB) 2024-01-15T14:00:14,583 Collecting setuptools_scm>=6.2 (from setuptools_scm[toml]>=6.2) 2024-01-15T14:00:14,603 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-8.0.4-py3-none-any.whl (42 kB) 2024-01-15T14:00:14,949 Collecting packaging>=20 (from setuptools_scm>=6.2->setuptools_scm[toml]>=6.2) 2024-01-15T14:00:14,963 Using cached https://www.piwheels.org/simple/packaging/packaging-23.2-py3-none-any.whl (53 kB) 2024-01-15T14:00:15,076 Collecting typing-extensions (from setuptools_scm>=6.2->setuptools_scm[toml]>=6.2) 2024-01-15T14:00:15,090 Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.9.0-py3-none-any.whl (32 kB) 2024-01-15T14:00:17,754 Installing collected packages: wheel, typing-extensions, setuptools, packaging, setuptools_scm 2024-01-15T14:00:17,971 Creating /tmp/pip-build-env-kwk2ji29/overlay/local/bin 2024-01-15T14:00:17,973 changing mode of /tmp/pip-build-env-kwk2ji29/overlay/local/bin/wheel to 755 2024-01-15T14:00:20,607 Successfully installed packaging-23.2 setuptools-69.0.3 setuptools_scm-8.0.4 typing-extensions-4.9.0 wheel-0.42.0 2024-01-15T14:00:20,871 [notice] A new release of pip is available: 23.3.1 -> 23.3.2 2024-01-15T14:00:20,872 [notice] To update, run: python3 -m pip install --upgrade pip 2024-01-15T14:00:21,158 Installing build dependencies: finished with status 'done' 2024-01-15T14:00:21,162 Getting requirements to build wheel: started 2024-01-15T14:00:21,163 Running command Getting requirements to build wheel 2024-01-15T14:00:22,076 running egg_info 2024-01-15T14:00:22,082 writing brainglobe_workflows.egg-info/PKG-INFO 2024-01-15T14:00:22,090 writing dependency_links to brainglobe_workflows.egg-info/dependency_links.txt 2024-01-15T14:00:22,092 writing entry points to brainglobe_workflows.egg-info/entry_points.txt 2024-01-15T14:00:22,096 writing requirements to brainglobe_workflows.egg-info/requires.txt 2024-01-15T14:00:22,097 writing top-level names to brainglobe_workflows.egg-info/top_level.txt 2024-01-15T14:00:22,134 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-01-15T14:00:22,138 reading manifest file 'brainglobe_workflows.egg-info/SOURCES.txt' 2024-01-15T14:00:22,140 reading manifest template 'MANIFEST.in' 2024-01-15T14:00:22,142 warning: no previously-included files found matching '.pre-commit-config.yaml' 2024-01-15T14:00:22,143 warning: no previously-included files found matching '*.yaml' 2024-01-15T14:00:22,143 warning: no previously-included files found matching '*.yml' 2024-01-15T14:00:22,144 warning: no previously-included files found matching 'Dockerfile' 2024-01-15T14:00:22,145 warning: no previously-included files found matching '*.ini' 2024-01-15T14:00:22,156 warning: no previously-included files matching '*' found under directory 'benchmarks/results' 2024-01-15T14:00:22,156 warning: no previously-included files matching '__pycache__' found under directory '*' 2024-01-15T14:00:22,157 warning: no previously-included files matching '*.py[co]' found under directory '*' 2024-01-15T14:00:22,163 warning: no files found matching '*.pxd' anywhere in distribution 2024-01-15T14:00:22,163 no previously-included directories found matching 'docs' 2024-01-15T14:00:22,164 no previously-included directories found matching 'tests' 2024-01-15T14:00:22,165 no previously-included directories found matching 'resources' 2024-01-15T14:00:22,165 no previously-included directories found matching '.github' 2024-01-15T14:00:22,166 no previously-included directories found matching '.tox' 2024-01-15T14:00:22,166 adding license file 'LICENSE' 2024-01-15T14:00:22,169 writing manifest file 'brainglobe_workflows.egg-info/SOURCES.txt' 2024-01-15T14:00:22,293 Getting requirements to build wheel: finished with status 'done' 2024-01-15T14:00:22,306 Created temporary directory: /tmp/pip-modern-metadata-szc4lukt 2024-01-15T14:00:22,308 Preparing metadata (pyproject.toml): started 2024-01-15T14:00:22,309 Running command Preparing metadata (pyproject.toml) 2024-01-15T14:00:23,148 running dist_info 2024-01-15T14:00:23,154 creating /tmp/pip-modern-metadata-szc4lukt/brainglobe_workflows.egg-info 2024-01-15T14:00:23,159 writing /tmp/pip-modern-metadata-szc4lukt/brainglobe_workflows.egg-info/PKG-INFO 2024-01-15T14:00:23,168 writing dependency_links to /tmp/pip-modern-metadata-szc4lukt/brainglobe_workflows.egg-info/dependency_links.txt 2024-01-15T14:00:23,170 writing entry points to /tmp/pip-modern-metadata-szc4lukt/brainglobe_workflows.egg-info/entry_points.txt 2024-01-15T14:00:23,174 writing requirements to /tmp/pip-modern-metadata-szc4lukt/brainglobe_workflows.egg-info/requires.txt 2024-01-15T14:00:23,175 writing top-level names to /tmp/pip-modern-metadata-szc4lukt/brainglobe_workflows.egg-info/top_level.txt 2024-01-15T14:00:23,177 writing manifest file '/tmp/pip-modern-metadata-szc4lukt/brainglobe_workflows.egg-info/SOURCES.txt' 2024-01-15T14:00:23,210 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-01-15T14:00:23,213 reading manifest file '/tmp/pip-modern-metadata-szc4lukt/brainglobe_workflows.egg-info/SOURCES.txt' 2024-01-15T14:00:23,215 reading manifest template 'MANIFEST.in' 2024-01-15T14:00:23,216 warning: no previously-included files found matching '.pre-commit-config.yaml' 2024-01-15T14:00:23,217 warning: no previously-included files found matching '*.yaml' 2024-01-15T14:00:23,217 warning: no previously-included files found matching '*.yml' 2024-01-15T14:00:23,218 warning: no previously-included files found matching 'Dockerfile' 2024-01-15T14:00:23,218 warning: no previously-included files found matching '*.ini' 2024-01-15T14:00:23,229 warning: no previously-included files matching '*' found under directory 'benchmarks/results' 2024-01-15T14:00:23,230 warning: no previously-included files matching '__pycache__' found under directory '*' 2024-01-15T14:00:23,230 warning: no previously-included files matching '*.py[co]' found under directory '*' 2024-01-15T14:00:23,235 warning: no files found matching '*.pxd' anywhere in distribution 2024-01-15T14:00:23,236 no previously-included directories found matching 'docs' 2024-01-15T14:00:23,237 no previously-included directories found matching 'tests' 2024-01-15T14:00:23,237 no previously-included directories found matching 'resources' 2024-01-15T14:00:23,238 no previously-included directories found matching '.github' 2024-01-15T14:00:23,239 no previously-included directories found matching '.tox' 2024-01-15T14:00:23,239 adding license file 'LICENSE' 2024-01-15T14:00:23,240 writing manifest file '/tmp/pip-modern-metadata-szc4lukt/brainglobe_workflows.egg-info/SOURCES.txt' 2024-01-15T14:00:23,241 creating '/tmp/pip-modern-metadata-szc4lukt/brainglobe_workflows-1.1.2.dist-info' 2024-01-15T14:00:23,408 Preparing metadata (pyproject.toml): finished with status 'done' 2024-01-15T14:00:23,413 Source in /tmp/pip-wheel-j7ov7tuv/brainglobe-workflows_8ca66c5a469d42689ba449393b92ba21 has version 1.1.2, which satisfies requirement brainglobe-workflows==1.1.2 from https://files.pythonhosted.org/packages/db/a3/fe90d65876b53bee6382de11980cd0dc8897c7a39ac9451e1a85063beb46/brainglobe-workflows-1.1.2.tar.gz 2024-01-15T14:00:23,414 Removed brainglobe-workflows==1.1.2 from https://files.pythonhosted.org/packages/db/a3/fe90d65876b53bee6382de11980cd0dc8897c7a39ac9451e1a85063beb46/brainglobe-workflows-1.1.2.tar.gz from build tracker '/tmp/pip-build-tracker-eatbzrza' 2024-01-15T14:00:23,421 Created temporary directory: /tmp/pip-unpack-i402x12q 2024-01-15T14:00:23,422 Created temporary directory: /tmp/pip-unpack-dhg92fn6 2024-01-15T14:00:23,481 Building wheels for collected packages: brainglobe-workflows 2024-01-15T14:00:23,485 Created temporary directory: /tmp/pip-wheel-0t_6i6_d 2024-01-15T14:00:23,486 Destination directory: /tmp/pip-wheel-0t_6i6_d 2024-01-15T14:00:23,488 Building wheel for brainglobe-workflows (pyproject.toml): started 2024-01-15T14:00:23,489 Running command Building wheel for brainglobe-workflows (pyproject.toml) 2024-01-15T14:00:24,327 running bdist_wheel 2024-01-15T14:00:24,349 running build 2024-01-15T14:00:24,350 running build_py 2024-01-15T14:00:24,355 creating build 2024-01-15T14:00:24,356 creating build/lib 2024-01-15T14:00:24,357 creating build/lib/brainglobe_workflows 2024-01-15T14:00:24,358 copying brainglobe_workflows/__init__.py -> build/lib/brainglobe_workflows 2024-01-15T14:00:24,360 copying brainglobe_workflows/utils.py -> build/lib/brainglobe_workflows 2024-01-15T14:00:24,361 running egg_info 2024-01-15T14:00:24,366 writing brainglobe_workflows.egg-info/PKG-INFO 2024-01-15T14:00:24,374 writing dependency_links to brainglobe_workflows.egg-info/dependency_links.txt 2024-01-15T14:00:24,375 writing entry points to brainglobe_workflows.egg-info/entry_points.txt 2024-01-15T14:00:24,379 writing requirements to brainglobe_workflows.egg-info/requires.txt 2024-01-15T14:00:24,380 writing top-level names to brainglobe_workflows.egg-info/top_level.txt 2024-01-15T14:00:24,405 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-01-15T14:00:24,408 reading manifest file 'brainglobe_workflows.egg-info/SOURCES.txt' 2024-01-15T14:00:24,410 reading manifest template 'MANIFEST.in' 2024-01-15T14:00:24,411 warning: no previously-included files found matching '.pre-commit-config.yaml' 2024-01-15T14:00:24,412 warning: no previously-included files found matching '*.yaml' 2024-01-15T14:00:24,413 warning: no previously-included files found matching '*.yml' 2024-01-15T14:00:24,413 warning: no previously-included files found matching 'Dockerfile' 2024-01-15T14:00:24,414 warning: no previously-included files found matching '*.ini' 2024-01-15T14:00:24,424 warning: no previously-included files matching '*' found under directory 'benchmarks/results' 2024-01-15T14:00:24,425 warning: no previously-included files matching '__pycache__' found under directory '*' 2024-01-15T14:00:24,425 warning: no previously-included files matching '*.py[co]' found under directory '*' 2024-01-15T14:00:24,432 warning: no files found matching '*.pxd' anywhere in distribution 2024-01-15T14:00:24,432 no previously-included directories found matching 'docs' 2024-01-15T14:00:24,433 no previously-included directories found matching 'tests' 2024-01-15T14:00:24,434 no previously-included directories found matching 'resources' 2024-01-15T14:00:24,434 no previously-included directories found matching '.github' 2024-01-15T14:00:24,435 no previously-included directories found matching '.tox' 2024-01-15T14:00:24,436 adding license file 'LICENSE' 2024-01-15T14:00:24,437 writing manifest file 'brainglobe_workflows.egg-info/SOURCES.txt' 2024-01-15T14:00:24,439 /tmp/pip-build-env-kwk2ji29/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'brainglobe_workflows.brainmapper' is absent from the `packages` configuration. 2024-01-15T14:00:24,440 !! 2024-01-15T14:00:24,441 ******************************************************************************** 2024-01-15T14:00:24,441 ############################ 2024-01-15T14:00:24,441 # Package would be ignored # 2024-01-15T14:00:24,442 ############################ 2024-01-15T14:00:24,442 Python recognizes 'brainglobe_workflows.brainmapper' as an importable package[^1], 2024-01-15T14:00:24,443 but it is absent from setuptools' `packages` configuration. 2024-01-15T14:00:24,444 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-15T14:00:24,444 package, please make sure that 'brainglobe_workflows.brainmapper' is explicitly added 2024-01-15T14:00:24,445 to the `packages` configuration field. 2024-01-15T14:00:24,446 Alternatively, you can also rely on setuptools' discovery methods 2024-01-15T14:00:24,446 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-15T14:00:24,447 instead of `find_packages(...)`/`find:`). 2024-01-15T14:00:24,448 You can read more about "package discovery" on setuptools documentation page: 2024-01-15T14:00:24,449 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-15T14:00:24,450 If you don't want 'brainglobe_workflows.brainmapper' to be distributed and are 2024-01-15T14:00:24,450 already explicitly excluding 'brainglobe_workflows.brainmapper' via 2024-01-15T14:00:24,451 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-15T14:00:24,451 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-15T14:00:24,452 combination with a more fine grained `package-data` configuration. 2024-01-15T14:00:24,453 You can read more about "package data files" on setuptools documentation page: 2024-01-15T14:00:24,454 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-15T14:00:24,455 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-15T14:00:24,456 even if it does not contain any `.py` files. 2024-01-15T14:00:24,456 On the other hand, currently there is no concept of package data 2024-01-15T14:00:24,457 directory, all directories are treated like packages. 2024-01-15T14:00:24,457 ******************************************************************************** 2024-01-15T14:00:24,458 !! 2024-01-15T14:00:24,459 check.warn(importable) 2024-01-15T14:00:24,460 /tmp/pip-build-env-kwk2ji29/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'brainglobe_workflows.brainmapper.analyse' is absent from the `packages` configuration. 2024-01-15T14:00:24,460 !! 2024-01-15T14:00:24,461 ******************************************************************************** 2024-01-15T14:00:24,462 ############################ 2024-01-15T14:00:24,462 # Package would be ignored # 2024-01-15T14:00:24,463 ############################ 2024-01-15T14:00:24,463 Python recognizes 'brainglobe_workflows.brainmapper.analyse' as an importable package[^1], 2024-01-15T14:00:24,464 but it is absent from setuptools' `packages` configuration. 2024-01-15T14:00:24,465 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-15T14:00:24,466 package, please make sure that 'brainglobe_workflows.brainmapper.analyse' is explicitly added 2024-01-15T14:00:24,466 to the `packages` configuration field. 2024-01-15T14:00:24,468 Alternatively, you can also rely on setuptools' discovery methods 2024-01-15T14:00:24,468 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-15T14:00:24,469 instead of `find_packages(...)`/`find:`). 2024-01-15T14:00:24,470 You can read more about "package discovery" on setuptools documentation page: 2024-01-15T14:00:24,471 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-15T14:00:24,472 If you don't want 'brainglobe_workflows.brainmapper.analyse' to be distributed and are 2024-01-15T14:00:24,472 already explicitly excluding 'brainglobe_workflows.brainmapper.analyse' via 2024-01-15T14:00:24,472 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-15T14:00:24,473 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-15T14:00:24,473 combination with a more fine grained `package-data` configuration. 2024-01-15T14:00:24,474 You can read more about "package data files" on setuptools documentation page: 2024-01-15T14:00:24,475 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-15T14:00:24,477 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-15T14:00:24,477 even if it does not contain any `.py` files. 2024-01-15T14:00:24,477 On the other hand, currently there is no concept of package data 2024-01-15T14:00:24,478 directory, all directories are treated like packages. 2024-01-15T14:00:24,478 ******************************************************************************** 2024-01-15T14:00:24,479 !! 2024-01-15T14:00:24,480 check.warn(importable) 2024-01-15T14:00:24,480 /tmp/pip-build-env-kwk2ji29/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'brainglobe_workflows.brainmapper.extract' is absent from the `packages` configuration. 2024-01-15T14:00:24,481 !! 2024-01-15T14:00:24,482 ******************************************************************************** 2024-01-15T14:00:24,482 ############################ 2024-01-15T14:00:24,483 # Package would be ignored # 2024-01-15T14:00:24,483 ############################ 2024-01-15T14:00:24,484 Python recognizes 'brainglobe_workflows.brainmapper.extract' as an importable package[^1], 2024-01-15T14:00:24,484 but it is absent from setuptools' `packages` configuration. 2024-01-15T14:00:24,485 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-15T14:00:24,486 package, please make sure that 'brainglobe_workflows.brainmapper.extract' is explicitly added 2024-01-15T14:00:24,486 to the `packages` configuration field. 2024-01-15T14:00:24,487 Alternatively, you can also rely on setuptools' discovery methods 2024-01-15T14:00:24,488 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-15T14:00:24,489 instead of `find_packages(...)`/`find:`). 2024-01-15T14:00:24,490 You can read more about "package discovery" on setuptools documentation page: 2024-01-15T14:00:24,491 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-15T14:00:24,492 If you don't want 'brainglobe_workflows.brainmapper.extract' to be distributed and are 2024-01-15T14:00:24,493 already explicitly excluding 'brainglobe_workflows.brainmapper.extract' via 2024-01-15T14:00:24,493 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-15T14:00:24,494 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-15T14:00:24,494 combination with a more fine grained `package-data` configuration. 2024-01-15T14:00:24,496 You can read more about "package data files" on setuptools documentation page: 2024-01-15T14:00:24,496 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-15T14:00:24,498 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-15T14:00:24,498 even if it does not contain any `.py` files. 2024-01-15T14:00:24,499 On the other hand, currently there is no concept of package data 2024-01-15T14:00:24,499 directory, all directories are treated like packages. 2024-01-15T14:00:24,499 ******************************************************************************** 2024-01-15T14:00:24,500 !! 2024-01-15T14:00:24,501 check.warn(importable) 2024-01-15T14:00:24,501 /tmp/pip-build-env-kwk2ji29/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'brainglobe_workflows.brainmapper.tools' is absent from the `packages` configuration. 2024-01-15T14:00:24,502 !! 2024-01-15T14:00:24,502 ******************************************************************************** 2024-01-15T14:00:24,503 ############################ 2024-01-15T14:00:24,503 # Package would be ignored # 2024-01-15T14:00:24,504 ############################ 2024-01-15T14:00:24,504 Python recognizes 'brainglobe_workflows.brainmapper.tools' as an importable package[^1], 2024-01-15T14:00:24,504 but it is absent from setuptools' `packages` configuration. 2024-01-15T14:00:24,505 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-15T14:00:24,506 package, please make sure that 'brainglobe_workflows.brainmapper.tools' is explicitly added 2024-01-15T14:00:24,507 to the `packages` configuration field. 2024-01-15T14:00:24,508 Alternatively, you can also rely on setuptools' discovery methods 2024-01-15T14:00:24,508 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-15T14:00:24,509 instead of `find_packages(...)`/`find:`). 2024-01-15T14:00:24,510 You can read more about "package discovery" on setuptools documentation page: 2024-01-15T14:00:24,511 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-15T14:00:24,513 If you don't want 'brainglobe_workflows.brainmapper.tools' to be distributed and are 2024-01-15T14:00:24,513 already explicitly excluding 'brainglobe_workflows.brainmapper.tools' via 2024-01-15T14:00:24,514 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-15T14:00:24,514 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-15T14:00:24,515 combination with a more fine grained `package-data` configuration. 2024-01-15T14:00:24,516 You can read more about "package data files" on setuptools documentation page: 2024-01-15T14:00:24,517 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-15T14:00:24,518 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-15T14:00:24,519 even if it does not contain any `.py` files. 2024-01-15T14:00:24,520 On the other hand, currently there is no concept of package data 2024-01-15T14:00:24,520 directory, all directories are treated like packages. 2024-01-15T14:00:24,521 ******************************************************************************** 2024-01-15T14:00:24,522 !! 2024-01-15T14:00:24,522 check.warn(importable) 2024-01-15T14:00:24,523 /tmp/pip-build-env-kwk2ji29/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'brainglobe_workflows.cellfinder_core' is absent from the `packages` configuration. 2024-01-15T14:00:24,524 !! 2024-01-15T14:00:24,525 ******************************************************************************** 2024-01-15T14:00:24,525 ############################ 2024-01-15T14:00:24,526 # Package would be ignored # 2024-01-15T14:00:24,526 ############################ 2024-01-15T14:00:24,526 Python recognizes 'brainglobe_workflows.cellfinder_core' as an importable package[^1], 2024-01-15T14:00:24,527 but it is absent from setuptools' `packages` configuration. 2024-01-15T14:00:24,528 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-15T14:00:24,528 package, please make sure that 'brainglobe_workflows.cellfinder_core' is explicitly added 2024-01-15T14:00:24,529 to the `packages` configuration field. 2024-01-15T14:00:24,530 Alternatively, you can also rely on setuptools' discovery methods 2024-01-15T14:00:24,530 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-15T14:00:24,531 instead of `find_packages(...)`/`find:`). 2024-01-15T14:00:24,531 You can read more about "package discovery" on setuptools documentation page: 2024-01-15T14:00:24,532 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-15T14:00:24,533 If you don't want 'brainglobe_workflows.cellfinder_core' to be distributed and are 2024-01-15T14:00:24,534 already explicitly excluding 'brainglobe_workflows.cellfinder_core' via 2024-01-15T14:00:24,534 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-15T14:00:24,535 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-15T14:00:24,535 combination with a more fine grained `package-data` configuration. 2024-01-15T14:00:24,537 You can read more about "package data files" on setuptools documentation page: 2024-01-15T14:00:24,538 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-15T14:00:24,539 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-15T14:00:24,540 even if it does not contain any `.py` files. 2024-01-15T14:00:24,540 On the other hand, currently there is no concept of package data 2024-01-15T14:00:24,541 directory, all directories are treated like packages. 2024-01-15T14:00:24,541 ******************************************************************************** 2024-01-15T14:00:24,542 !! 2024-01-15T14:00:24,543 check.warn(importable) 2024-01-15T14:00:24,543 /tmp/pip-build-env-kwk2ji29/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'brainglobe_workflows.configs' is absent from the `packages` configuration. 2024-01-15T14:00:24,544 !! 2024-01-15T14:00:24,545 ******************************************************************************** 2024-01-15T14:00:24,545 ############################ 2024-01-15T14:00:24,546 # Package would be ignored # 2024-01-15T14:00:24,546 ############################ 2024-01-15T14:00:24,547 Python recognizes 'brainglobe_workflows.configs' as an importable package[^1], 2024-01-15T14:00:24,548 but it is absent from setuptools' `packages` configuration. 2024-01-15T14:00:24,549 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-15T14:00:24,549 package, please make sure that 'brainglobe_workflows.configs' is explicitly added 2024-01-15T14:00:24,550 to the `packages` configuration field. 2024-01-15T14:00:24,551 Alternatively, you can also rely on setuptools' discovery methods 2024-01-15T14:00:24,552 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-15T14:00:24,552 instead of `find_packages(...)`/`find:`). 2024-01-15T14:00:24,553 You can read more about "package discovery" on setuptools documentation page: 2024-01-15T14:00:24,554 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-15T14:00:24,555 If you don't want 'brainglobe_workflows.configs' to be distributed and are 2024-01-15T14:00:24,556 already explicitly excluding 'brainglobe_workflows.configs' via 2024-01-15T14:00:24,556 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-15T14:00:24,557 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-15T14:00:24,557 combination with a more fine grained `package-data` configuration. 2024-01-15T14:00:24,558 You can read more about "package data files" on setuptools documentation page: 2024-01-15T14:00:24,559 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-15T14:00:24,560 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-15T14:00:24,561 even if it does not contain any `.py` files. 2024-01-15T14:00:24,561 On the other hand, currently there is no concept of package data 2024-01-15T14:00:24,562 directory, all directories are treated like packages. 2024-01-15T14:00:24,563 ******************************************************************************** 2024-01-15T14:00:24,563 !! 2024-01-15T14:00:24,564 check.warn(importable) 2024-01-15T14:00:24,564 creating build/lib/brainglobe_workflows/brainmapper 2024-01-15T14:00:24,565 copying brainglobe_workflows/brainmapper/__init__.py -> build/lib/brainglobe_workflows/brainmapper 2024-01-15T14:00:24,565 copying brainglobe_workflows/brainmapper/main.py -> build/lib/brainglobe_workflows/brainmapper 2024-01-15T14:00:24,566 creating build/lib/brainglobe_workflows/brainmapper/analyse 2024-01-15T14:00:24,566 copying brainglobe_workflows/brainmapper/analyse/__init__.py -> build/lib/brainglobe_workflows/brainmapper/analyse 2024-01-15T14:00:24,567 copying brainglobe_workflows/brainmapper/analyse/analyse.py -> build/lib/brainglobe_workflows/brainmapper/analyse 2024-01-15T14:00:24,567 creating build/lib/brainglobe_workflows/brainmapper/extract 2024-01-15T14:00:24,568 copying brainglobe_workflows/brainmapper/extract/__init__.py -> build/lib/brainglobe_workflows/brainmapper/extract 2024-01-15T14:00:24,568 copying brainglobe_workflows/brainmapper/extract/extract_cubes.py -> build/lib/brainglobe_workflows/brainmapper/extract 2024-01-15T14:00:24,569 creating build/lib/brainglobe_workflows/brainmapper/tools 2024-01-15T14:00:24,569 copying brainglobe_workflows/brainmapper/tools/__init__.py -> build/lib/brainglobe_workflows/brainmapper/tools 2024-01-15T14:00:24,570 copying brainglobe_workflows/brainmapper/tools/image_processing.py -> build/lib/brainglobe_workflows/brainmapper/tools 2024-01-15T14:00:24,571 copying brainglobe_workflows/brainmapper/tools/parser.py -> build/lib/brainglobe_workflows/brainmapper/tools 2024-01-15T14:00:24,571 copying brainglobe_workflows/brainmapper/tools/prep.py -> build/lib/brainglobe_workflows/brainmapper/tools 2024-01-15T14:00:24,572 copying brainglobe_workflows/brainmapper/tools/system.py -> build/lib/brainglobe_workflows/brainmapper/tools 2024-01-15T14:00:24,572 copying brainglobe_workflows/brainmapper/tools/tools.py -> build/lib/brainglobe_workflows/brainmapper/tools 2024-01-15T14:00:24,573 creating build/lib/brainglobe_workflows/cellfinder_core 2024-01-15T14:00:24,573 copying brainglobe_workflows/cellfinder_core/__init__.py -> build/lib/brainglobe_workflows/cellfinder_core 2024-01-15T14:00:24,574 copying brainglobe_workflows/cellfinder_core/cellfinder_core.py -> build/lib/brainglobe_workflows/cellfinder_core 2024-01-15T14:00:24,574 creating build/lib/brainglobe_workflows/configs 2024-01-15T14:00:24,575 copying brainglobe_workflows/configs/cellfinder.json -> build/lib/brainglobe_workflows/configs 2024-01-15T14:00:24,575 installing to build/bdist.linux-armv7l/wheel 2024-01-15T14:00:24,576 running install 2024-01-15T14:00:24,576 running install_lib 2024-01-15T14:00:24,577 creating build/bdist.linux-armv7l 2024-01-15T14:00:24,578 creating build/bdist.linux-armv7l/wheel 2024-01-15T14:00:24,578 creating build/bdist.linux-armv7l/wheel/brainglobe_workflows 2024-01-15T14:00:24,579 copying build/lib/brainglobe_workflows/__init__.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows 2024-01-15T14:00:24,579 creating build/bdist.linux-armv7l/wheel/brainglobe_workflows/brainmapper 2024-01-15T14:00:24,580 copying build/lib/brainglobe_workflows/brainmapper/__init__.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/brainmapper 2024-01-15T14:00:24,580 creating build/bdist.linux-armv7l/wheel/brainglobe_workflows/brainmapper/analyse 2024-01-15T14:00:24,580 copying build/lib/brainglobe_workflows/brainmapper/analyse/__init__.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/brainmapper/analyse 2024-01-15T14:00:24,581 copying build/lib/brainglobe_workflows/brainmapper/analyse/analyse.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/brainmapper/analyse 2024-01-15T14:00:24,581 copying build/lib/brainglobe_workflows/brainmapper/main.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/brainmapper 2024-01-15T14:00:24,582 creating build/bdist.linux-armv7l/wheel/brainglobe_workflows/brainmapper/tools 2024-01-15T14:00:24,582 copying build/lib/brainglobe_workflows/brainmapper/tools/system.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/brainmapper/tools 2024-01-15T14:00:24,583 copying build/lib/brainglobe_workflows/brainmapper/tools/__init__.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/brainmapper/tools 2024-01-15T14:00:24,583 copying build/lib/brainglobe_workflows/brainmapper/tools/tools.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/brainmapper/tools 2024-01-15T14:00:24,584 copying build/lib/brainglobe_workflows/brainmapper/tools/prep.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/brainmapper/tools 2024-01-15T14:00:24,584 copying build/lib/brainglobe_workflows/brainmapper/tools/parser.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/brainmapper/tools 2024-01-15T14:00:24,585 copying build/lib/brainglobe_workflows/brainmapper/tools/image_processing.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/brainmapper/tools 2024-01-15T14:00:24,585 creating build/bdist.linux-armv7l/wheel/brainglobe_workflows/brainmapper/extract 2024-01-15T14:00:24,586 copying build/lib/brainglobe_workflows/brainmapper/extract/__init__.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/brainmapper/extract 2024-01-15T14:00:24,587 copying build/lib/brainglobe_workflows/brainmapper/extract/extract_cubes.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/brainmapper/extract 2024-01-15T14:00:24,587 copying build/lib/brainglobe_workflows/utils.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows 2024-01-15T14:00:24,588 creating build/bdist.linux-armv7l/wheel/brainglobe_workflows/cellfinder_core 2024-01-15T14:00:24,589 copying build/lib/brainglobe_workflows/cellfinder_core/cellfinder_core.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/cellfinder_core 2024-01-15T14:00:24,589 copying build/lib/brainglobe_workflows/cellfinder_core/__init__.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/cellfinder_core 2024-01-15T14:00:24,590 creating build/bdist.linux-armv7l/wheel/brainglobe_workflows/configs 2024-01-15T14:00:24,590 copying build/lib/brainglobe_workflows/configs/cellfinder.json -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/configs 2024-01-15T14:00:24,591 running install_egg_info 2024-01-15T14:00:24,591 Copying brainglobe_workflows.egg-info to build/bdist.linux-armv7l/wheel/brainglobe_workflows-1.1.2-py3.11.egg-info 2024-01-15T14:00:24,602 running install_scripts 2024-01-15T14:00:24,624 creating build/bdist.linux-armv7l/wheel/brainglobe_workflows-1.1.2.dist-info/WHEEL 2024-01-15T14:00:24,626 creating '/tmp/pip-wheel-0t_6i6_d/.tmp-mhyo8t_l/brainglobe_workflows-1.1.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-01-15T14:00:24,628 adding 'brainglobe_workflows/__init__.py' 2024-01-15T14:00:24,630 adding 'brainglobe_workflows/utils.py' 2024-01-15T14:00:24,632 adding 'brainglobe_workflows/brainmapper/__init__.py' 2024-01-15T14:00:24,633 adding 'brainglobe_workflows/brainmapper/main.py' 2024-01-15T14:00:24,635 adding 'brainglobe_workflows/brainmapper/analyse/__init__.py' 2024-01-15T14:00:24,636 adding 'brainglobe_workflows/brainmapper/analyse/analyse.py' 2024-01-15T14:00:24,638 adding 'brainglobe_workflows/brainmapper/extract/__init__.py' 2024-01-15T14:00:24,640 adding 'brainglobe_workflows/brainmapper/extract/extract_cubes.py' 2024-01-15T14:00:24,642 adding 'brainglobe_workflows/brainmapper/tools/__init__.py' 2024-01-15T14:00:24,643 adding 'brainglobe_workflows/brainmapper/tools/image_processing.py' 2024-01-15T14:00:24,645 adding 'brainglobe_workflows/brainmapper/tools/parser.py' 2024-01-15T14:00:24,647 adding 'brainglobe_workflows/brainmapper/tools/prep.py' 2024-01-15T14:00:24,648 adding 'brainglobe_workflows/brainmapper/tools/system.py' 2024-01-15T14:00:24,650 adding 'brainglobe_workflows/brainmapper/tools/tools.py' 2024-01-15T14:00:24,652 adding 'brainglobe_workflows/cellfinder_core/__init__.py' 2024-01-15T14:00:24,654 adding 'brainglobe_workflows/cellfinder_core/cellfinder_core.py' 2024-01-15T14:00:24,656 adding 'brainglobe_workflows/configs/cellfinder.json' 2024-01-15T14:00:24,658 adding 'brainglobe_workflows-1.1.2.dist-info/LICENSE' 2024-01-15T14:00:24,660 adding 'brainglobe_workflows-1.1.2.dist-info/METADATA' 2024-01-15T14:00:24,661 adding 'brainglobe_workflows-1.1.2.dist-info/WHEEL' 2024-01-15T14:00:24,662 adding 'brainglobe_workflows-1.1.2.dist-info/entry_points.txt' 2024-01-15T14:00:24,663 adding 'brainglobe_workflows-1.1.2.dist-info/top_level.txt' 2024-01-15T14:00:24,664 adding 'brainglobe_workflows-1.1.2.dist-info/RECORD' 2024-01-15T14:00:24,666 removing build/bdist.linux-armv7l/wheel 2024-01-15T14:00:24,799 Building wheel for brainglobe-workflows (pyproject.toml): finished with status 'done' 2024-01-15T14:00:24,804 Created wheel for brainglobe-workflows: filename=brainglobe_workflows-1.1.2-py3-none-any.whl size=32063 sha256=1e2349b462dae0287a363ad4f5902deee2ba011f684c751d61fa619803f4cf60 2024-01-15T14:00:24,805 Stored in directory: /tmp/pip-ephem-wheel-cache-sc1ur778/wheels/4a/3d/3d/83499ec453271d69f5e25941e94e43cad5f5afae24a8112057 2024-01-15T14:00:24,819 Successfully built brainglobe-workflows 2024-01-15T14:00:24,823 Removed build tracker: '/tmp/pip-build-tracker-eatbzrza'