2024-01-16T16:55:43,381 Created temporary directory: /tmp/pip-build-tracker-n6gblsux 2024-01-16T16:55:43,382 Initialized build tracking at /tmp/pip-build-tracker-n6gblsux 2024-01-16T16:55:43,383 Created build tracker: /tmp/pip-build-tracker-n6gblsux 2024-01-16T16:55:43,383 Entered build tracker: /tmp/pip-build-tracker-n6gblsux 2024-01-16T16:55:43,384 Created temporary directory: /tmp/pip-wheel-tz_f2akd 2024-01-16T16:55:43,388 Created temporary directory: /tmp/pip-ephem-wheel-cache-39ansxb6 2024-01-16T16:55:43,410 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-16T16:55:43,414 2 location(s) to search for versions of brainglobe-workflows: 2024-01-16T16:55:43,414 * https://pypi.org/simple/brainglobe-workflows/ 2024-01-16T16:55:43,414 * https://www.piwheels.org/simple/brainglobe-workflows/ 2024-01-16T16:55:43,414 Fetching project page and analyzing links: https://pypi.org/simple/brainglobe-workflows/ 2024-01-16T16:55:43,415 Getting page https://pypi.org/simple/brainglobe-workflows/ 2024-01-16T16:55:43,417 Found index url https://pypi.org/simple/ 2024-01-16T16:55:43,647 Fetched page https://pypi.org/simple/brainglobe-workflows/ as application/vnd.pypi.simple.v1+json 2024-01-16T16:55:43,650 Found link https://files.pythonhosted.org/packages/86/ff/7475753a7ca5ced322da02ae703996835522e454697fda6be04040de6f3b/brainglobe-workflows-1.0.0.tar.gz (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9), version: 1.0.0 2024-01-16T16:55:43,651 Skipping link: No binaries permitted for brainglobe-workflows: https://files.pythonhosted.org/packages/fd/3d/3ba19433653c5f8e4e1fefb3453ff6c6fb161c65970589784ad8d493dfc4/brainglobe_workflows-1.0.0-py3-none-any.whl (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9) 2024-01-16T16:55:43,651 Found link https://files.pythonhosted.org/packages/2c/2c/63316da6fb3b7dea22844058c8c2afe92c387a0039f8ed964336584dfd69/brainglobe-workflows-1.1.0.tar.gz (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9), version: 1.1.0 2024-01-16T16:55:43,652 Skipping link: No binaries permitted for brainglobe-workflows: https://files.pythonhosted.org/packages/d4/e7/ce8124540814aceaad9c50c8976531f4e3d9e648ecedf4f5bfe4646b777a/brainglobe_workflows-1.1.0-py3-none-any.whl (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9) 2024-01-16T16:55:43,653 Found link https://files.pythonhosted.org/packages/db/a3/fe90d65876b53bee6382de11980cd0dc8897c7a39ac9451e1a85063beb46/brainglobe-workflows-1.1.2.tar.gz (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9), version: 1.1.2 2024-01-16T16:55:43,654 Skipping link: No binaries permitted for brainglobe-workflows: https://files.pythonhosted.org/packages/f5/b6/659b4528b8caa5c402c7260961af18f176fecebacc610f812aaf1a792554/brainglobe_workflows-1.1.2-py3-none-any.whl (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9) 2024-01-16T16:55:43,654 Found link https://files.pythonhosted.org/packages/cf/32/2cdab745c05ea15e566d43c878311ee978b9bd9c40ce16c91046c832d795/brainglobe-workflows-1.1.3.tar.gz (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9), version: 1.1.3 2024-01-16T16:55:43,655 Skipping link: No binaries permitted for brainglobe-workflows: https://files.pythonhosted.org/packages/fb/fa/b5a1d0706cba1ba5aa0363c3e0ec4458ce02b385f18a4aee8e01e57f968c/brainglobe_workflows-1.1.3-py3-none-any.whl (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9) 2024-01-16T16:55:43,656 Fetching project page and analyzing links: https://www.piwheels.org/simple/brainglobe-workflows/ 2024-01-16T16:55:43,656 Getting page https://www.piwheels.org/simple/brainglobe-workflows/ 2024-01-16T16:55:43,658 Found index url https://www.piwheels.org/simple/ 2024-01-16T16:55:43,813 Fetched page https://www.piwheels.org/simple/brainglobe-workflows/ as text/html 2024-01-16T16:55:43,815 Skipping link: No binaries permitted for brainglobe-workflows: https://www.piwheels.org/simple/brainglobe-workflows/brainglobe_workflows-1.1.2-py3-none-any.whl#sha256=1e2349b462dae0287a363ad4f5902deee2ba011f684c751d61fa619803f4cf60 (from https://www.piwheels.org/simple/brainglobe-workflows/) (requires-python:>=3.9) 2024-01-16T16:55:43,816 Skipping link: No binaries permitted for brainglobe-workflows: https://www.piwheels.org/simple/brainglobe-workflows/brainglobe_workflows-1.1.0-py3-none-any.whl#sha256=a51e28508b22a8a3a84fbad104aff0ccf7ec652c7c6a612c7d55b80c3d5d5b31 (from https://www.piwheels.org/simple/brainglobe-workflows/) (requires-python:>=3.9) 2024-01-16T16:55:43,817 Skipping link: No binaries permitted for brainglobe-workflows: https://www.piwheels.org/simple/brainglobe-workflows/brainglobe_workflows-1.0.0-py3-none-any.whl#sha256=9875e2cf8c7d6256d90d8026fec7102f19d325dd8480202f52100052a04dfcaf (from https://www.piwheels.org/simple/brainglobe-workflows/) (requires-python:>=3.9) 2024-01-16T16:55:43,817 Skipping link: not a file: https://www.piwheels.org/simple/brainglobe-workflows/ 2024-01-16T16:55:43,818 Skipping link: not a file: https://pypi.org/simple/brainglobe-workflows/ 2024-01-16T16:55:43,836 Given no hashes to check 1 links for project 'brainglobe-workflows': discarding no candidates 2024-01-16T16:55:43,854 Collecting brainglobe-workflows==1.1.3 2024-01-16T16:55:43,857 Created temporary directory: /tmp/pip-unpack-vt24b03k 2024-01-16T16:55:44,085 Downloading brainglobe-workflows-1.1.3.tar.gz (30 kB) 2024-01-16T16:55:44,149 Added brainglobe-workflows==1.1.3 from https://files.pythonhosted.org/packages/cf/32/2cdab745c05ea15e566d43c878311ee978b9bd9c40ce16c91046c832d795/brainglobe-workflows-1.1.3.tar.gz to build tracker '/tmp/pip-build-tracker-n6gblsux' 2024-01-16T16:55:44,157 Created temporary directory: /tmp/pip-build-env-uim63cmd 2024-01-16T16:55:44,162 Installing build dependencies: started 2024-01-16T16:55:44,163 Running command pip subprocess to install build dependencies 2024-01-16T16:55:45,299 Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-01-16T16:55:45,820 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-16T16:55:47,302 Collecting setuptools>=45 2024-01-16T16:55:47,316 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.0.3-py3-none-any.whl (819 kB) 2024-01-16T16:55:47,537 Collecting wheel 2024-01-16T16:55:47,551 Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB) 2024-01-16T16:55:47,828 Collecting setuptools_scm>=6.2 (from setuptools_scm[toml]>=6.2) 2024-01-16T16:55:47,843 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-8.0.4-py3-none-any.whl (42 kB) 2024-01-16T16:55:48,187 Collecting packaging>=20 (from setuptools_scm>=6.2->setuptools_scm[toml]>=6.2) 2024-01-16T16:55:48,209 Using cached https://www.piwheels.org/simple/packaging/packaging-23.2-py3-none-any.whl (53 kB) 2024-01-16T16:55:48,321 Collecting typing-extensions (from setuptools_scm>=6.2->setuptools_scm[toml]>=6.2) 2024-01-16T16:55:48,336 Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.9.0-py3-none-any.whl (32 kB) 2024-01-16T16:55:50,864 Installing collected packages: wheel, typing-extensions, setuptools, packaging, setuptools_scm 2024-01-16T16:55:51,086 Creating /tmp/pip-build-env-uim63cmd/overlay/local/bin 2024-01-16T16:55:51,088 changing mode of /tmp/pip-build-env-uim63cmd/overlay/local/bin/wheel to 755 2024-01-16T16:55:53,978 Successfully installed packaging-23.2 setuptools-69.0.3 setuptools_scm-8.0.4 typing-extensions-4.9.0 wheel-0.42.0 2024-01-16T16:55:54,312 [notice] A new release of pip is available: 23.3.1 -> 23.3.2 2024-01-16T16:55:54,313 [notice] To update, run: python3 -m pip install --upgrade pip 2024-01-16T16:55:54,600 Installing build dependencies: finished with status 'done' 2024-01-16T16:55:54,604 Getting requirements to build wheel: started 2024-01-16T16:55:54,605 Running command Getting requirements to build wheel 2024-01-16T16:55:55,793 running egg_info 2024-01-16T16:55:55,798 writing brainglobe_workflows.egg-info/PKG-INFO 2024-01-16T16:55:55,807 writing dependency_links to brainglobe_workflows.egg-info/dependency_links.txt 2024-01-16T16:55:55,809 writing entry points to brainglobe_workflows.egg-info/entry_points.txt 2024-01-16T16:55:55,813 writing requirements to brainglobe_workflows.egg-info/requires.txt 2024-01-16T16:55:55,814 writing top-level names to brainglobe_workflows.egg-info/top_level.txt 2024-01-16T16:55:55,852 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-01-16T16:55:55,855 reading manifest file 'brainglobe_workflows.egg-info/SOURCES.txt' 2024-01-16T16:55:55,857 reading manifest template 'MANIFEST.in' 2024-01-16T16:55:55,859 warning: no previously-included files found matching '.pre-commit-config.yaml' 2024-01-16T16:55:55,859 warning: no previously-included files found matching '*.yaml' 2024-01-16T16:55:55,860 warning: no previously-included files found matching '*.yml' 2024-01-16T16:55:55,860 warning: no previously-included files found matching 'Dockerfile' 2024-01-16T16:55:55,861 warning: no previously-included files found matching '*.ini' 2024-01-16T16:55:55,869 warning: no previously-included files matching '*' found under directory 'benchmarks/results' 2024-01-16T16:55:55,870 warning: no previously-included files matching '__pycache__' found under directory '*' 2024-01-16T16:55:55,871 warning: no previously-included files matching '*.py[co]' found under directory '*' 2024-01-16T16:55:55,875 warning: no files found matching '*.pxd' anywhere in distribution 2024-01-16T16:55:55,875 no previously-included directories found matching 'docs' 2024-01-16T16:55:55,876 no previously-included directories found matching 'tests' 2024-01-16T16:55:55,876 no previously-included directories found matching 'resources' 2024-01-16T16:55:55,877 no previously-included directories found matching '.github' 2024-01-16T16:55:55,877 no previously-included directories found matching '.tox' 2024-01-16T16:55:55,878 adding license file 'LICENSE' 2024-01-16T16:55:55,880 writing manifest file 'brainglobe_workflows.egg-info/SOURCES.txt' 2024-01-16T16:55:56,003 Getting requirements to build wheel: finished with status 'done' 2024-01-16T16:55:56,013 Created temporary directory: /tmp/pip-modern-metadata-neo0_qv2 2024-01-16T16:55:56,016 Preparing metadata (pyproject.toml): started 2024-01-16T16:55:56,017 Running command Preparing metadata (pyproject.toml) 2024-01-16T16:55:56,899 running dist_info 2024-01-16T16:55:56,905 creating /tmp/pip-modern-metadata-neo0_qv2/brainglobe_workflows.egg-info 2024-01-16T16:55:56,911 writing /tmp/pip-modern-metadata-neo0_qv2/brainglobe_workflows.egg-info/PKG-INFO 2024-01-16T16:55:56,921 writing dependency_links to /tmp/pip-modern-metadata-neo0_qv2/brainglobe_workflows.egg-info/dependency_links.txt 2024-01-16T16:55:56,923 writing entry points to /tmp/pip-modern-metadata-neo0_qv2/brainglobe_workflows.egg-info/entry_points.txt 2024-01-16T16:55:56,927 writing requirements to /tmp/pip-modern-metadata-neo0_qv2/brainglobe_workflows.egg-info/requires.txt 2024-01-16T16:55:56,928 writing top-level names to /tmp/pip-modern-metadata-neo0_qv2/brainglobe_workflows.egg-info/top_level.txt 2024-01-16T16:55:56,930 writing manifest file '/tmp/pip-modern-metadata-neo0_qv2/brainglobe_workflows.egg-info/SOURCES.txt' 2024-01-16T16:55:56,968 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-01-16T16:55:56,971 reading manifest file '/tmp/pip-modern-metadata-neo0_qv2/brainglobe_workflows.egg-info/SOURCES.txt' 2024-01-16T16:55:56,973 reading manifest template 'MANIFEST.in' 2024-01-16T16:55:56,974 warning: no previously-included files found matching '.pre-commit-config.yaml' 2024-01-16T16:55:56,975 warning: no previously-included files found matching '*.yaml' 2024-01-16T16:55:56,976 warning: no previously-included files found matching '*.yml' 2024-01-16T16:55:56,977 warning: no previously-included files found matching 'Dockerfile' 2024-01-16T16:55:56,977 warning: no previously-included files found matching '*.ini' 2024-01-16T16:55:56,988 warning: no previously-included files matching '*' found under directory 'benchmarks/results' 2024-01-16T16:55:56,989 warning: no previously-included files matching '__pycache__' found under directory '*' 2024-01-16T16:55:56,989 warning: no previously-included files matching '*.py[co]' found under directory '*' 2024-01-16T16:55:56,994 warning: no files found matching '*.pxd' anywhere in distribution 2024-01-16T16:55:56,995 no previously-included directories found matching 'docs' 2024-01-16T16:55:56,996 no previously-included directories found matching 'tests' 2024-01-16T16:55:56,996 no previously-included directories found matching 'resources' 2024-01-16T16:55:56,997 no previously-included directories found matching '.github' 2024-01-16T16:55:56,998 no previously-included directories found matching '.tox' 2024-01-16T16:55:56,999 adding license file 'LICENSE' 2024-01-16T16:55:57,000 writing manifest file '/tmp/pip-modern-metadata-neo0_qv2/brainglobe_workflows.egg-info/SOURCES.txt' 2024-01-16T16:55:57,001 creating '/tmp/pip-modern-metadata-neo0_qv2/brainglobe_workflows-1.1.3.dist-info' 2024-01-16T16:55:57,194 Preparing metadata (pyproject.toml): finished with status 'done' 2024-01-16T16:55:57,201 Source in /tmp/pip-wheel-tz_f2akd/brainglobe-workflows_ee38d76448b44d28981baa6b2373e80c has version 1.1.3, which satisfies requirement brainglobe-workflows==1.1.3 from https://files.pythonhosted.org/packages/cf/32/2cdab745c05ea15e566d43c878311ee978b9bd9c40ce16c91046c832d795/brainglobe-workflows-1.1.3.tar.gz 2024-01-16T16:55:57,202 Removed brainglobe-workflows==1.1.3 from https://files.pythonhosted.org/packages/cf/32/2cdab745c05ea15e566d43c878311ee978b9bd9c40ce16c91046c832d795/brainglobe-workflows-1.1.3.tar.gz from build tracker '/tmp/pip-build-tracker-n6gblsux' 2024-01-16T16:55:57,209 Created temporary directory: /tmp/pip-unpack-58vrh0e1 2024-01-16T16:55:57,210 Created temporary directory: /tmp/pip-unpack-5llgowlf 2024-01-16T16:55:57,271 Building wheels for collected packages: brainglobe-workflows 2024-01-16T16:55:57,277 Created temporary directory: /tmp/pip-wheel-l_9t6hcu 2024-01-16T16:55:57,277 Destination directory: /tmp/pip-wheel-l_9t6hcu 2024-01-16T16:55:57,280 Building wheel for brainglobe-workflows (pyproject.toml): started 2024-01-16T16:55:57,281 Running command Building wheel for brainglobe-workflows (pyproject.toml) 2024-01-16T16:55:58,112 running bdist_wheel 2024-01-16T16:55:58,135 running build 2024-01-16T16:55:58,136 running build_py 2024-01-16T16:55:58,150 creating build 2024-01-16T16:55:58,150 creating build/lib 2024-01-16T16:55:58,151 creating build/lib/brainglobe_workflows 2024-01-16T16:55:58,153 copying brainglobe_workflows/__init__.py -> build/lib/brainglobe_workflows 2024-01-16T16:55:58,155 copying brainglobe_workflows/utils.py -> build/lib/brainglobe_workflows 2024-01-16T16:55:58,157 running egg_info 2024-01-16T16:55:58,162 writing brainglobe_workflows.egg-info/PKG-INFO 2024-01-16T16:55:58,171 writing dependency_links to brainglobe_workflows.egg-info/dependency_links.txt 2024-01-16T16:55:58,173 writing entry points to brainglobe_workflows.egg-info/entry_points.txt 2024-01-16T16:55:58,177 writing requirements to brainglobe_workflows.egg-info/requires.txt 2024-01-16T16:55:58,178 writing top-level names to brainglobe_workflows.egg-info/top_level.txt 2024-01-16T16:55:58,206 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-01-16T16:55:58,209 reading manifest file 'brainglobe_workflows.egg-info/SOURCES.txt' 2024-01-16T16:55:58,211 reading manifest template 'MANIFEST.in' 2024-01-16T16:55:58,213 warning: no previously-included files found matching '.pre-commit-config.yaml' 2024-01-16T16:55:58,213 warning: no previously-included files found matching '*.yaml' 2024-01-16T16:55:58,214 warning: no previously-included files found matching '*.yml' 2024-01-16T16:55:58,215 warning: no previously-included files found matching 'Dockerfile' 2024-01-16T16:55:58,215 warning: no previously-included files found matching '*.ini' 2024-01-16T16:55:58,226 warning: no previously-included files matching '*' found under directory 'benchmarks/results' 2024-01-16T16:55:58,227 warning: no previously-included files matching '__pycache__' found under directory '*' 2024-01-16T16:55:58,228 warning: no previously-included files matching '*.py[co]' found under directory '*' 2024-01-16T16:55:58,235 warning: no files found matching '*.pxd' anywhere in distribution 2024-01-16T16:55:58,235 no previously-included directories found matching 'docs' 2024-01-16T16:55:58,236 no previously-included directories found matching 'tests' 2024-01-16T16:55:58,237 no previously-included directories found matching 'resources' 2024-01-16T16:55:58,237 no previously-included directories found matching '.github' 2024-01-16T16:55:58,238 no previously-included directories found matching '.tox' 2024-01-16T16:55:58,238 adding license file 'LICENSE' 2024-01-16T16:55:58,240 writing manifest file 'brainglobe_workflows.egg-info/SOURCES.txt' 2024-01-16T16:55:58,243 /tmp/pip-build-env-uim63cmd/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'brainglobe_workflows.brainmapper' is absent from the `packages` configuration. 2024-01-16T16:55:58,243 !! 2024-01-16T16:55:58,244 ******************************************************************************** 2024-01-16T16:55:58,245 ############################ 2024-01-16T16:55:58,245 # Package would be ignored # 2024-01-16T16:55:58,246 ############################ 2024-01-16T16:55:58,247 Python recognizes 'brainglobe_workflows.brainmapper' as an importable package[^1], 2024-01-16T16:55:58,247 but it is absent from setuptools' `packages` configuration. 2024-01-16T16:55:58,248 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-16T16:55:58,249 package, please make sure that 'brainglobe_workflows.brainmapper' is explicitly added 2024-01-16T16:55:58,249 to the `packages` configuration field. 2024-01-16T16:55:58,251 Alternatively, you can also rely on setuptools' discovery methods 2024-01-16T16:55:58,251 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-16T16:55:58,252 instead of `find_packages(...)`/`find:`). 2024-01-16T16:55:58,253 You can read more about "package discovery" on setuptools documentation page: 2024-01-16T16:55:58,254 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-16T16:55:58,255 If you don't want 'brainglobe_workflows.brainmapper' to be distributed and are 2024-01-16T16:55:58,256 already explicitly excluding 'brainglobe_workflows.brainmapper' via 2024-01-16T16:55:58,257 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-16T16:55:58,257 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-16T16:55:58,258 combination with a more fine grained `package-data` configuration. 2024-01-16T16:55:58,259 You can read more about "package data files" on setuptools documentation page: 2024-01-16T16:55:58,260 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-16T16:55:58,262 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-16T16:55:58,263 even if it does not contain any `.py` files. 2024-01-16T16:55:58,263 On the other hand, currently there is no concept of package data 2024-01-16T16:55:58,264 directory, all directories are treated like packages. 2024-01-16T16:55:58,264 ******************************************************************************** 2024-01-16T16:55:58,265 !! 2024-01-16T16:55:58,266 check.warn(importable) 2024-01-16T16:55:58,267 /tmp/pip-build-env-uim63cmd/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'brainglobe_workflows.cellfinder_core' is absent from the `packages` configuration. 2024-01-16T16:55:58,267 !! 2024-01-16T16:55:58,269 ******************************************************************************** 2024-01-16T16:55:58,269 ############################ 2024-01-16T16:55:58,270 # Package would be ignored # 2024-01-16T16:55:58,270 ############################ 2024-01-16T16:55:58,271 Python recognizes 'brainglobe_workflows.cellfinder_core' as an importable package[^1], 2024-01-16T16:55:58,271 but it is absent from setuptools' `packages` configuration. 2024-01-16T16:55:58,272 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-16T16:55:58,273 package, please make sure that 'brainglobe_workflows.cellfinder_core' is explicitly added 2024-01-16T16:55:58,273 to the `packages` configuration field. 2024-01-16T16:55:58,274 Alternatively, you can also rely on setuptools' discovery methods 2024-01-16T16:55:58,275 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-16T16:55:58,275 instead of `find_packages(...)`/`find:`). 2024-01-16T16:55:58,277 You can read more about "package discovery" on setuptools documentation page: 2024-01-16T16:55:58,278 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-16T16:55:58,279 If you don't want 'brainglobe_workflows.cellfinder_core' to be distributed and are 2024-01-16T16:55:58,279 already explicitly excluding 'brainglobe_workflows.cellfinder_core' via 2024-01-16T16:55:58,280 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-16T16:55:58,280 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-16T16:55:58,281 combination with a more fine grained `package-data` configuration. 2024-01-16T16:55:58,282 You can read more about "package data files" on setuptools documentation page: 2024-01-16T16:55:58,283 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-16T16:55:58,285 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-16T16:55:58,285 even if it does not contain any `.py` files. 2024-01-16T16:55:58,286 On the other hand, currently there is no concept of package data 2024-01-16T16:55:58,286 directory, all directories are treated like packages. 2024-01-16T16:55:58,287 ******************************************************************************** 2024-01-16T16:55:58,288 !! 2024-01-16T16:55:58,289 check.warn(importable) 2024-01-16T16:55:58,289 /tmp/pip-build-env-uim63cmd/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'brainglobe_workflows.configs' is absent from the `packages` configuration. 2024-01-16T16:55:58,290 !! 2024-01-16T16:55:58,291 ******************************************************************************** 2024-01-16T16:55:58,291 ############################ 2024-01-16T16:55:58,292 # Package would be ignored # 2024-01-16T16:55:58,293 ############################ 2024-01-16T16:55:58,293 Python recognizes 'brainglobe_workflows.configs' as an importable package[^1], 2024-01-16T16:55:58,294 but it is absent from setuptools' `packages` configuration. 2024-01-16T16:55:58,295 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-16T16:55:58,296 package, please make sure that 'brainglobe_workflows.configs' is explicitly added 2024-01-16T16:55:58,296 to the `packages` configuration field. 2024-01-16T16:55:58,297 Alternatively, you can also rely on setuptools' discovery methods 2024-01-16T16:55:58,298 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-16T16:55:58,299 instead of `find_packages(...)`/`find:`). 2024-01-16T16:55:58,300 You can read more about "package discovery" on setuptools documentation page: 2024-01-16T16:55:58,301 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-16T16:55:58,301 If you don't want 'brainglobe_workflows.configs' to be distributed and are 2024-01-16T16:55:58,302 already explicitly excluding 'brainglobe_workflows.configs' via 2024-01-16T16:55:58,302 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-16T16:55:58,303 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-16T16:55:58,303 combination with a more fine grained `package-data` configuration. 2024-01-16T16:55:58,304 You can read more about "package data files" on setuptools documentation page: 2024-01-16T16:55:58,305 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-16T16:55:58,307 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-16T16:55:58,307 even if it does not contain any `.py` files. 2024-01-16T16:55:58,308 On the other hand, currently there is no concept of package data 2024-01-16T16:55:58,308 directory, all directories are treated like packages. 2024-01-16T16:55:58,309 ******************************************************************************** 2024-01-16T16:55:58,310 !! 2024-01-16T16:55:58,310 check.warn(importable) 2024-01-16T16:55:58,311 creating build/lib/brainglobe_workflows/brainmapper 2024-01-16T16:55:58,311 copying brainglobe_workflows/brainmapper/__init__.py -> build/lib/brainglobe_workflows/brainmapper 2024-01-16T16:55:58,312 copying brainglobe_workflows/brainmapper/analyse.py -> build/lib/brainglobe_workflows/brainmapper 2024-01-16T16:55:58,312 copying brainglobe_workflows/brainmapper/main.py -> build/lib/brainglobe_workflows/brainmapper 2024-01-16T16:55:58,313 copying brainglobe_workflows/brainmapper/parser.py -> build/lib/brainglobe_workflows/brainmapper 2024-01-16T16:55:58,314 copying brainglobe_workflows/brainmapper/prep.py -> build/lib/brainglobe_workflows/brainmapper 2024-01-16T16:55:58,314 creating build/lib/brainglobe_workflows/cellfinder_core 2024-01-16T16:55:58,314 copying brainglobe_workflows/cellfinder_core/__init__.py -> build/lib/brainglobe_workflows/cellfinder_core 2024-01-16T16:55:58,315 copying brainglobe_workflows/cellfinder_core/cellfinder_core.py -> build/lib/brainglobe_workflows/cellfinder_core 2024-01-16T16:55:58,316 creating build/lib/brainglobe_workflows/configs 2024-01-16T16:55:58,316 copying brainglobe_workflows/configs/cellfinder.json -> build/lib/brainglobe_workflows/configs 2024-01-16T16:55:58,317 installing to build/bdist.linux-armv7l/wheel 2024-01-16T16:55:58,317 running install 2024-01-16T16:55:58,321 running install_lib 2024-01-16T16:55:58,327 creating build/bdist.linux-armv7l 2024-01-16T16:55:58,328 creating build/bdist.linux-armv7l/wheel 2024-01-16T16:55:58,330 creating build/bdist.linux-armv7l/wheel/brainglobe_workflows 2024-01-16T16:55:58,331 creating build/bdist.linux-armv7l/wheel/brainglobe_workflows/configs 2024-01-16T16:55:58,333 copying build/lib/brainglobe_workflows/configs/cellfinder.json -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/configs 2024-01-16T16:55:58,335 creating build/bdist.linux-armv7l/wheel/brainglobe_workflows/cellfinder_core 2024-01-16T16:55:58,337 copying build/lib/brainglobe_workflows/cellfinder_core/__init__.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/cellfinder_core 2024-01-16T16:55:58,339 copying build/lib/brainglobe_workflows/cellfinder_core/cellfinder_core.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/cellfinder_core 2024-01-16T16:55:58,342 copying build/lib/brainglobe_workflows/__init__.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows 2024-01-16T16:55:58,343 copying build/lib/brainglobe_workflows/utils.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows 2024-01-16T16:55:58,346 creating build/bdist.linux-armv7l/wheel/brainglobe_workflows/brainmapper 2024-01-16T16:55:58,347 copying build/lib/brainglobe_workflows/brainmapper/parser.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/brainmapper 2024-01-16T16:55:58,350 copying build/lib/brainglobe_workflows/brainmapper/analyse.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/brainmapper 2024-01-16T16:55:58,352 copying build/lib/brainglobe_workflows/brainmapper/prep.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/brainmapper 2024-01-16T16:55:58,354 copying build/lib/brainglobe_workflows/brainmapper/main.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/brainmapper 2024-01-16T16:55:58,357 copying build/lib/brainglobe_workflows/brainmapper/__init__.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/brainmapper 2024-01-16T16:55:58,358 running install_egg_info 2024-01-16T16:55:58,364 Copying brainglobe_workflows.egg-info to build/bdist.linux-armv7l/wheel/brainglobe_workflows-1.1.3-py3.11.egg-info 2024-01-16T16:55:58,379 running install_scripts 2024-01-16T16:55:58,406 creating build/bdist.linux-armv7l/wheel/brainglobe_workflows-1.1.3.dist-info/WHEEL 2024-01-16T16:55:58,409 creating '/tmp/pip-wheel-l_9t6hcu/.tmp-ae0hyj3w/brainglobe_workflows-1.1.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-01-16T16:55:58,411 adding 'brainglobe_workflows/__init__.py' 2024-01-16T16:55:58,413 adding 'brainglobe_workflows/utils.py' 2024-01-16T16:55:58,414 adding 'brainglobe_workflows/brainmapper/__init__.py' 2024-01-16T16:55:58,416 adding 'brainglobe_workflows/brainmapper/analyse.py' 2024-01-16T16:55:58,418 adding 'brainglobe_workflows/brainmapper/main.py' 2024-01-16T16:55:58,420 adding 'brainglobe_workflows/brainmapper/parser.py' 2024-01-16T16:55:58,422 adding 'brainglobe_workflows/brainmapper/prep.py' 2024-01-16T16:55:58,424 adding 'brainglobe_workflows/cellfinder_core/__init__.py' 2024-01-16T16:55:58,426 adding 'brainglobe_workflows/cellfinder_core/cellfinder_core.py' 2024-01-16T16:55:58,428 adding 'brainglobe_workflows/configs/cellfinder.json' 2024-01-16T16:55:58,430 adding 'brainglobe_workflows-1.1.3.dist-info/LICENSE' 2024-01-16T16:55:58,432 adding 'brainglobe_workflows-1.1.3.dist-info/METADATA' 2024-01-16T16:55:58,433 adding 'brainglobe_workflows-1.1.3.dist-info/WHEEL' 2024-01-16T16:55:58,434 adding 'brainglobe_workflows-1.1.3.dist-info/entry_points.txt' 2024-01-16T16:55:58,435 adding 'brainglobe_workflows-1.1.3.dist-info/top_level.txt' 2024-01-16T16:55:58,436 adding 'brainglobe_workflows-1.1.3.dist-info/RECORD' 2024-01-16T16:55:58,438 removing build/bdist.linux-armv7l/wheel 2024-01-16T16:55:58,569 Building wheel for brainglobe-workflows (pyproject.toml): finished with status 'done' 2024-01-16T16:55:58,574 Created wheel for brainglobe-workflows: filename=brainglobe_workflows-1.1.3-py3-none-any.whl size=23374 sha256=4d334ac8e4da3af98e62cf68de8faef80e5bf8d7e115ad7b3bdb881a23552f86 2024-01-16T16:55:58,576 Stored in directory: /tmp/pip-ephem-wheel-cache-39ansxb6/wheels/5a/68/57/d6d3f4cbc0d7e73f530a29c94ccb04dab859ba94d3e1c1ec07 2024-01-16T16:55:58,590 Successfully built brainglobe-workflows 2024-01-16T16:55:58,594 Removed build tracker: '/tmp/pip-build-tracker-n6gblsux'