2024-01-18T23:37:56,844 Created temporary directory: /tmp/pip-build-tracker-opys08u5
2024-01-18T23:37:56,846 Initialized build tracking at /tmp/pip-build-tracker-opys08u5
2024-01-18T23:37:56,846 Created build tracker: /tmp/pip-build-tracker-opys08u5
2024-01-18T23:37:56,847 Entered build tracker: /tmp/pip-build-tracker-opys08u5
2024-01-18T23:37:56,847 Created temporary directory: /tmp/pip-wheel-amc5s6rn
2024-01-18T23:37:56,851 Created temporary directory: /tmp/pip-ephem-wheel-cache-jt9xs8ba
2024-01-18T23:37:56,873 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-01-18T23:37:56,876 2 location(s) to search for versions of hydra-rbp:
2024-01-18T23:37:56,876 * https://pypi.org/simple/hydra-rbp/
2024-01-18T23:37:56,876 * https://www.piwheels.org/simple/hydra-rbp/
2024-01-18T23:37:56,877 Fetching project page and analyzing links: https://pypi.org/simple/hydra-rbp/
2024-01-18T23:37:56,878 Getting page https://pypi.org/simple/hydra-rbp/
2024-01-18T23:37:56,880 Found index url https://pypi.org/simple/
2024-01-18T23:37:57,093 Fetched page https://pypi.org/simple/hydra-rbp/ as application/vnd.pypi.simple.v1+json
2024-01-18T23:37:57,097   Found link https://files.pythonhosted.org/packages/c5/09/447109100c21cdb2df7a02685baa6324ffad284da0f14a3cfb6ce4b64972/hydra_rbp-0.1.21.27.tar.gz (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6), version: 0.1.21.27
2024-01-18T23:37:57,098   Found link https://files.pythonhosted.org/packages/f3/d2/ff965058796232582106702bd93d72d0bdce3920bd9ae52773bfd8a8db71/hydra_rbp-0.1.21.28.tar.gz (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6), version: 0.1.21.28
2024-01-18T23:37:57,099   Skipping link: No binaries permitted for hydra-rbp: https://files.pythonhosted.org/packages/dd/03/db9334056fd0aeda9ecc38c591895e544b6f4530b5003a50dcdb3773bd05/hydra_rbp-0.1.21.29-py3-none-any.whl (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6)
2024-01-18T23:37:57,100   Found link https://files.pythonhosted.org/packages/49/44/f12c30956623421691997bd996a83708903dbf9f1a0aef3f06b3b209c780/hydra_rbp-0.1.21.29.tar.gz (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6), version: 0.1.21.29
2024-01-18T23:37:57,100   Skipping link: No binaries permitted for hydra-rbp: https://files.pythonhosted.org/packages/2b/eb/56bd5fd43ae21430c6fb8b13146c9f39e742ed414207aaadf1c3657266f3/hydra_rbp-0.1.21.30-py3-none-any.whl (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6)
2024-01-18T23:37:57,101   Found link https://files.pythonhosted.org/packages/83/7c/f7f088132d9ff564207a99897d2c0375b7a9663214d221f5a06fccfd32db/hydra_rbp-0.1.21.30.tar.gz (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6), version: 0.1.21.30
2024-01-18T23:37:57,102   Skipping link: No binaries permitted for hydra-rbp: https://files.pythonhosted.org/packages/e5/2d/54a09009e4b876ab35dce61dd20d809ec9823b128f6d918b68397d41f075/hydra_rbp-0.1.21.31-py3-none-any.whl (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6)
2024-01-18T23:37:57,103   Found link https://files.pythonhosted.org/packages/f7/dc/a9b087b4d2c0d4a9719f850141f5f3bd7d43e54f8494456ee8aaec507a62/hydra_rbp-0.1.21.31.tar.gz (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6), version: 0.1.21.31
2024-01-18T23:37:57,104   Skipping link: No binaries permitted for hydra-rbp: https://files.pythonhosted.org/packages/ed/14/bd88a23bf60ddc41af6967b180df6a81ca3a07e61a92caccd61004eb7bec/hydra_rbp-0.1.21.32-py3-none-any.whl (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6)
2024-01-18T23:37:57,105   Found link https://files.pythonhosted.org/packages/42/1a/4e011525c4acc37587aaeda8cb1a4a43c18024f828a7f2a944838804fd20/hydra_rbp-0.1.21.32.tar.gz (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6), version: 0.1.21.32
2024-01-18T23:37:57,105   Skipping link: No binaries permitted for hydra-rbp: https://files.pythonhosted.org/packages/88/57/b1d2918fe6e9988fdf1bc06b7e5c69a89acd7fde29e0a2c635c8439d774d/hydra_rbp-0.1.21.33-py3-none-any.whl (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6)
2024-01-18T23:37:57,107   Found link https://files.pythonhosted.org/packages/bc/87/28d107780077880671add84ac044599769995ea63ddafc2003421a8796de/hydra_rbp-0.1.21.33.tar.gz (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6), version: 0.1.21.33
2024-01-18T23:37:57,108 Fetching project page and analyzing links: https://www.piwheels.org/simple/hydra-rbp/
2024-01-18T23:37:57,108 Getting page https://www.piwheels.org/simple/hydra-rbp/
2024-01-18T23:37:57,109 Found index url https://www.piwheels.org/simple/
2024-01-18T23:37:57,291 Fetched page https://www.piwheels.org/simple/hydra-rbp/ as text/html
2024-01-18T23:37:57,294   Skipping link: No binaries permitted for hydra-rbp: https://www.piwheels.org/simple/hydra-rbp/hydra_rbp-0.1.21.32-py3-none-any.whl#sha256=f2c2dd36cbc56568123d1736387532a1e0cb29727a80e19ec147b7b32891ae63 (from https://www.piwheels.org/simple/hydra-rbp/) (requires-python:>=3.6)
2024-01-18T23:37:57,295   Skipping link: No binaries permitted for hydra-rbp: https://www.piwheels.org/simple/hydra-rbp/hydra_rbp-0.1.21.31-py3-none-any.whl#sha256=176bbf98f3d5e29b7c9a5236b92d239567dab6b746703603818e840e0a7857db (from https://www.piwheels.org/simple/hydra-rbp/) (requires-python:>=3.6)
2024-01-18T23:37:57,295   Skipping link: No binaries permitted for hydra-rbp: https://www.piwheels.org/simple/hydra-rbp/hydra_rbp-0.1.21.30-py3-none-any.whl#sha256=997fd56e129174ba095b515d6883360d8b23cca3c8c83ddeb33c988e0bcc39c8 (from https://www.piwheels.org/simple/hydra-rbp/) (requires-python:>=3.6)
2024-01-18T23:37:57,296   Skipping link: No binaries permitted for hydra-rbp: https://www.piwheels.org/simple/hydra-rbp/hydra_rbp-0.1.21.29-py3-none-any.whl#sha256=e1ffbf05d3124e9af44781389df5f63a7ba227f3dcf8c98cbdb55b4eda436c9b (from https://www.piwheels.org/simple/hydra-rbp/) (requires-python:>=3.6)
2024-01-18T23:37:57,296   Skipping link: No binaries permitted for hydra-rbp: https://www.piwheels.org/simple/hydra-rbp/hydra_rbp-0.1.21.28-py3-none-any.whl#sha256=2dce1c5216cc6dfeb287ba82fc7ecc0f084574aebca3a134b3d2dd9c2c0bd3dc (from https://www.piwheels.org/simple/hydra-rbp/) (requires-python:>=3.6)
2024-01-18T23:37:57,297   Skipping link: No binaries permitted for hydra-rbp: https://www.piwheels.org/simple/hydra-rbp/hydra_rbp-0.1.21.27-py3-none-any.whl#sha256=c9ac5819931db90ef2e745d6179b24dc2bdc396044ae3c6ceaef7dbadbe6a45a (from https://www.piwheels.org/simple/hydra-rbp/) (requires-python:>=3.6)
2024-01-18T23:37:57,298 Skipping link: not a file: https://www.piwheels.org/simple/hydra-rbp/
2024-01-18T23:37:57,298 Skipping link: not a file: https://pypi.org/simple/hydra-rbp/
2024-01-18T23:37:57,318 Given no hashes to check 1 links for project 'hydra-rbp': discarding no candidates
2024-01-18T23:37:57,336 Collecting hydra-rbp==0.1.21.33
2024-01-18T23:37:57,339   Created temporary directory: /tmp/pip-unpack-o_inuxzx
2024-01-18T23:37:57,555   Downloading hydra_rbp-0.1.21.33.tar.gz (52.3 MB)
2024-01-18T23:38:15,823   Added hydra-rbp==0.1.21.33 from https://files.pythonhosted.org/packages/bc/87/28d107780077880671add84ac044599769995ea63ddafc2003421a8796de/hydra_rbp-0.1.21.33.tar.gz to build tracker '/tmp/pip-build-tracker-opys08u5'
2024-01-18T23:38:15,825   Running setup.py (path:/tmp/pip-wheel-amc5s6rn/hydra-rbp_e3246ad3ed554c51bb6e79dea99f33ef/setup.py) egg_info for package hydra-rbp
2024-01-18T23:38:15,826   Created temporary directory: /tmp/pip-pip-egg-info-tjhn470s
2024-01-18T23:38:15,827   Preparing metadata (setup.py): started
2024-01-18T23:38:15,828   Running command python setup.py egg_info
2024-01-18T23:38:16,535   /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
2024-01-18T23:38:16,536   !!

2024-01-18T23:38:16,537           ********************************************************************************
2024-01-18T23:38:16,538           Requirements should be satisfied by a PEP 517 installer.
2024-01-18T23:38:16,538           If you are using pip, you can try `pip install --use-pep517`.
2024-01-18T23:38:16,539           ********************************************************************************

2024-01-18T23:38:16,541   !!
2024-01-18T23:38:16,541     dist.fetch_build_eggs(dist.setup_requires)
2024-01-18T23:38:19,309   running egg_info
2024-01-18T23:38:19,311   creating /tmp/pip-pip-egg-info-tjhn470s/hydra_rbp.egg-info
2024-01-18T23:38:19,339   writing /tmp/pip-pip-egg-info-tjhn470s/hydra_rbp.egg-info/PKG-INFO
2024-01-18T23:38:19,343   writing dependency_links to /tmp/pip-pip-egg-info-tjhn470s/hydra_rbp.egg-info/dependency_links.txt
2024-01-18T23:38:19,345   writing entry points to /tmp/pip-pip-egg-info-tjhn470s/hydra_rbp.egg-info/entry_points.txt
2024-01-18T23:38:19,347   writing requirements to /tmp/pip-pip-egg-info-tjhn470s/hydra_rbp.egg-info/requires.txt
2024-01-18T23:38:19,348   writing top-level names to /tmp/pip-pip-egg-info-tjhn470s/hydra_rbp.egg-info/top_level.txt
2024-01-18T23:38:19,350   writing manifest file '/tmp/pip-pip-egg-info-tjhn470s/hydra_rbp.egg-info/SOURCES.txt'
2024-01-18T23:38:19,466   reading manifest file '/tmp/pip-pip-egg-info-tjhn470s/hydra_rbp.egg-info/SOURCES.txt'
2024-01-18T23:38:19,468   reading manifest template 'MANIFEST.in'
2024-01-18T23:38:19,472   adding license file 'LICENSE'
2024-01-18T23:38:19,477   writing manifest file '/tmp/pip-pip-egg-info-tjhn470s/hydra_rbp.egg-info/SOURCES.txt'
2024-01-18T23:38:19,585   Preparing metadata (setup.py): finished with status 'done'
2024-01-18T23:38:19,589   Source in /tmp/pip-wheel-amc5s6rn/hydra-rbp_e3246ad3ed554c51bb6e79dea99f33ef has version 0.1.21.33, which satisfies requirement hydra-rbp==0.1.21.33 from https://files.pythonhosted.org/packages/bc/87/28d107780077880671add84ac044599769995ea63ddafc2003421a8796de/hydra_rbp-0.1.21.33.tar.gz
2024-01-18T23:38:19,590   Removed hydra-rbp==0.1.21.33 from https://files.pythonhosted.org/packages/bc/87/28d107780077880671add84ac044599769995ea63ddafc2003421a8796de/hydra_rbp-0.1.21.33.tar.gz from build tracker '/tmp/pip-build-tracker-opys08u5'
2024-01-18T23:38:19,597 Created temporary directory: /tmp/pip-unpack-0yhpzqy_
2024-01-18T23:38:19,598 Created temporary directory: /tmp/pip-unpack-8wzondjm
2024-01-18T23:38:19,614 Building wheels for collected packages: hydra-rbp
2024-01-18T23:38:19,618   Created temporary directory: /tmp/pip-wheel-2yvjpi1e
2024-01-18T23:38:19,619   Building wheel for hydra-rbp (setup.py): started
2024-01-18T23:38:19,621   Destination directory: /tmp/pip-wheel-2yvjpi1e
2024-01-18T23:38:19,621   Running command python setup.py bdist_wheel
2024-01-18T23:38:20,320   /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
2024-01-18T23:38:20,321   !!

2024-01-18T23:38:20,322           ********************************************************************************
2024-01-18T23:38:20,323           Requirements should be satisfied by a PEP 517 installer.
2024-01-18T23:38:20,323           If you are using pip, you can try `pip install --use-pep517`.
2024-01-18T23:38:20,324           ********************************************************************************

2024-01-18T23:38:20,325   !!
2024-01-18T23:38:20,326     dist.fetch_build_eggs(dist.setup_requires)
2024-01-18T23:38:20,822   running bdist_wheel
2024-01-18T23:38:20,927   running build
2024-01-18T23:38:20,928   running build_py
2024-01-18T23:38:20,956   creating build
2024-01-18T23:38:20,957   creating build/lib
2024-01-18T23:38:20,958   creating build/lib/HydRa
2024-01-18T23:38:20,959   copying HydRa/test_data_load.py -> build/lib/HydRa
2024-01-18T23:38:20,961   copying HydRa/HydRa_predict.py -> build/lib/HydRa
2024-01-18T23:38:20,964   copying HydRa/__init__.py -> build/lib/HydRa
2024-01-18T23:38:20,966   copying HydRa/HydRa2_0_predict.py -> build/lib/HydRa
2024-01-18T23:38:20,970   creating build/lib/HydRa/preprocessing
2024-01-18T23:38:20,971   copying HydRa/preprocessing/get_SVM_seq_features.py -> build/lib/HydRa/preprocessing
2024-01-18T23:38:20,973   copying HydRa/preprocessing/__init__.py -> build/lib/HydRa/preprocessing
2024-01-18T23:38:20,975   copying HydRa/preprocessing/Get_All_selected_SVM_features.py -> build/lib/HydRa/preprocessing
2024-01-18T23:38:20,978   copying HydRa/preprocessing/predict_SS.py -> build/lib/HydRa/preprocessing
2024-01-18T23:38:20,979   copying HydRa/preprocessing/PPI_feature_generation.py -> build/lib/HydRa/preprocessing
2024-01-18T23:38:20,981   creating build/lib/HydRa/evaluation
2024-01-18T23:38:20,982   copying HydRa/evaluation/__init__.py -> build/lib/HydRa/evaluation
2024-01-18T23:38:20,984   copying HydRa/evaluation/ROC_PR_AUC_analysis.py -> build/lib/HydRa/evaluation
2024-01-18T23:38:20,987   creating build/lib/HydRa/training
2024-01-18T23:38:20,987   copying HydRa/training/train_and_evaluate_HydRa_bk.py -> build/lib/HydRa/training
2024-01-18T23:38:20,990   copying HydRa/training/train_and_evaluate_HydRa2_0.py -> build/lib/HydRa/training
2024-01-18T23:38:20,993   copying HydRa/training/train_HydRa2_0.py -> build/lib/HydRa/training
2024-01-18T23:38:20,996   copying HydRa/training/__init__.py -> build/lib/HydRa/training
2024-01-18T23:38:20,998   copying HydRa/training/train_and_evaluate_HydRa.py -> build/lib/HydRa/training
2024-01-18T23:38:21,001   copying HydRa/training/train_HydRa.py -> build/lib/HydRa/training
2024-01-18T23:38:21,004   creating build/lib/HydRa/predictions
2024-01-18T23:38:21,005   copying HydRa/predictions/Occlusion_map_v2.py -> build/lib/HydRa/predictions
2024-01-18T23:38:21,008   copying HydRa/predictions/Occlusion_map.py -> build/lib/HydRa/predictions
2024-01-18T23:38:21,011   copying HydRa/predictions/Occlusion_map_v3_HydRa2_0.py -> build/lib/HydRa/predictions
2024-01-18T23:38:21,015   copying HydRa/predictions/Occlusion_1D_analysis_2.py -> build/lib/HydRa/predictions
2024-01-18T23:38:21,017   copying HydRa/predictions/__init__.py -> build/lib/HydRa/predictions
2024-01-18T23:38:21,019   copying HydRa/predictions/Occlusion_map_v2_HydRa2_0.py -> build/lib/HydRa/predictions
2024-01-18T23:38:21,023   creating build/lib/HydRa/models
2024-01-18T23:38:21,024   copying HydRa/models/DNN_seq.py -> build/lib/HydRa/models
2024-01-18T23:38:21,029   copying HydRa/models/Sequence_class.py -> build/lib/HydRa/models
2024-01-18T23:38:21,032   copying HydRa/models/__init__.py -> build/lib/HydRa/models
2024-01-18T23:38:21,034   creating build/lib/HydRa/preprocessing/Feature_selection
2024-01-18T23:38:21,035   copying HydRa/preprocessing/Feature_selection/__init__.py -> build/lib/HydRa/preprocessing/Feature_selection
2024-01-18T23:38:21,037   copying HydRa/preprocessing/Feature_selection/Feature_selection_for_each_feature_after_chi2Filtering_forFinalTraining.py -> build/lib/HydRa/preprocessing/Feature_selection
2024-01-18T23:38:21,040   creating build/lib/HydRa/preprocessing/Feature_generation
2024-01-18T23:38:21,041   copying HydRa/preprocessing/Feature_generation/kmer_table_generation.py -> build/lib/HydRa/preprocessing/Feature_generation
2024-01-18T23:38:21,043   copying HydRa/preprocessing/Feature_generation/AAC_feature_table_generation.py -> build/lib/HydRa/preprocessing/Feature_generation
2024-01-18T23:38:21,044   copying HydRa/preprocessing/Feature_generation/Secondary_structure_prediction.py -> build/lib/HydRa/preprocessing/Feature_generation
2024-01-18T23:38:21,046   copying HydRa/preprocessing/Feature_generation/run_get_PPI_feature_mat_MB_STRING_addingOOPSXRNAXlabelsV2.py -> build/lib/HydRa/preprocessing/Feature_generation
2024-01-18T23:38:21,048   copying HydRa/preprocessing/Feature_generation/__init__.py -> build/lib/HydRa/preprocessing/Feature_generation
2024-01-18T23:38:21,050   copying HydRa/preprocessing/Feature_generation/get_PPI_feature_mat_MB_STRING.py -> build/lib/HydRa/preprocessing/Feature_generation
2024-01-18T23:38:21,052   copying HydRa/preprocessing/Feature_generation/PPI_feature_generation.py -> build/lib/HydRa/preprocessing/Feature_generation
2024-01-18T23:38:21,054   running egg_info
2024-01-18T23:38:21,106   writing hydra_rbp.egg-info/PKG-INFO
2024-01-18T23:38:21,109   writing dependency_links to hydra_rbp.egg-info/dependency_links.txt
2024-01-18T23:38:21,111   writing entry points to hydra_rbp.egg-info/entry_points.txt
2024-01-18T23:38:21,113   writing requirements to hydra_rbp.egg-info/requires.txt
2024-01-18T23:38:21,114   writing top-level names to hydra_rbp.egg-info/top_level.txt
2024-01-18T23:38:21,159   reading manifest file 'hydra_rbp.egg-info/SOURCES.txt'
2024-01-18T23:38:21,162   reading manifest template 'MANIFEST.in'
2024-01-18T23:38:21,165   adding license file 'LICENSE'
2024-01-18T23:38:21,170   writing manifest file 'hydra_rbp.egg-info/SOURCES.txt'
2024-01-18T23:38:21,172   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'HydRa.data' is absent from the `packages` configuration.
2024-01-18T23:38:21,173   !!

2024-01-18T23:38:21,174           ********************************************************************************
2024-01-18T23:38:21,174           ############################
2024-01-18T23:38:21,175           # Package would be ignored #
2024-01-18T23:38:21,175           ############################
2024-01-18T23:38:21,176           Python recognizes 'HydRa.data' as an importable package[^1],
2024-01-18T23:38:21,176           but it is absent from setuptools' `packages` configuration.

2024-01-18T23:38:21,177           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-18T23:38:21,178           package, please make sure that 'HydRa.data' is explicitly added
2024-01-18T23:38:21,178           to the `packages` configuration field.

2024-01-18T23:38:21,179           Alternatively, you can also rely on setuptools' discovery methods
2024-01-18T23:38:21,179           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-18T23:38:21,180           instead of `find_packages(...)`/`find:`).

2024-01-18T23:38:21,181           You can read more about "package discovery" on setuptools documentation page:

2024-01-18T23:38:21,182           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-18T23:38:21,183           If you don't want 'HydRa.data' to be distributed and are
2024-01-18T23:38:21,183           already explicitly excluding 'HydRa.data' via
2024-01-18T23:38:21,184           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-18T23:38:21,184           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-18T23:38:21,185           combination with a more fine grained `package-data` configuration.

2024-01-18T23:38:21,186           You can read more about "package data files" on setuptools documentation page:

2024-01-18T23:38:21,188           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-18T23:38:21,190           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-18T23:38:21,191                 even if it does not contain any `.py` files.
2024-01-18T23:38:21,198                 On the other hand, currently there is no concept of package data
2024-01-18T23:38:21,204                 directory, all directories are treated like packages.
2024-01-18T23:38:21,208           ********************************************************************************

2024-01-18T23:38:21,209   !!
2024-01-18T23:38:21,210     check.warn(importable)
2024-01-18T23:38:21,210   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'HydRa.pre_trained' is absent from the `packages` configuration.
2024-01-18T23:38:21,211   !!

2024-01-18T23:38:21,212           ********************************************************************************
2024-01-18T23:38:21,213           ############################
2024-01-18T23:38:21,213           # Package would be ignored #
2024-01-18T23:38:21,214           ############################
2024-01-18T23:38:21,214           Python recognizes 'HydRa.pre_trained' as an importable package[^1],
2024-01-18T23:38:21,215           but it is absent from setuptools' `packages` configuration.

2024-01-18T23:38:21,216           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-18T23:38:21,224           package, please make sure that 'HydRa.pre_trained' is explicitly added
2024-01-18T23:38:21,228           to the `packages` configuration field.

2024-01-18T23:38:21,229           Alternatively, you can also rely on setuptools' discovery methods
2024-01-18T23:38:21,230           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-18T23:38:21,230           instead of `find_packages(...)`/`find:`).

2024-01-18T23:38:21,234           You can read more about "package discovery" on setuptools documentation page:

2024-01-18T23:38:21,235           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-18T23:38:21,236           If you don't want 'HydRa.pre_trained' to be distributed and are
2024-01-18T23:38:21,237           already explicitly excluding 'HydRa.pre_trained' via
2024-01-18T23:38:21,237           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-18T23:38:21,238           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-18T23:38:21,238           combination with a more fine grained `package-data` configuration.

2024-01-18T23:38:21,239           You can read more about "package data files" on setuptools documentation page:

2024-01-18T23:38:21,240           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-18T23:38:21,242           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-18T23:38:21,242                 even if it does not contain any `.py` files.
2024-01-18T23:38:21,243                 On the other hand, currently there is no concept of package data
2024-01-18T23:38:21,243                 directory, all directories are treated like packages.
2024-01-18T23:38:21,244           ********************************************************************************

2024-01-18T23:38:21,245   !!
2024-01-18T23:38:21,245     check.warn(importable)
2024-01-18T23:38:21,246   creating build/lib/HydRa/data
2024-01-18T23:38:21,247   copying HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_menthaBioPlex_STRING.tsv -> build/lib/HydRa/data
2024-01-18T23:38:21,247   copying HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_noSS_menthaBioPlex_STRING.tsv -> build/lib/HydRa/data
2024-01-18T23:38:21,248   copying HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_AddNoSS_trainedWithWholeDataset.xls -> build/lib/HydRa/data
2024-01-18T23:38:21,353   copying HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_noSS_trainedWithWholeDataset.tsv -> build/lib/HydRa/data
2024-01-18T23:38:21,381   copying HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_trainedWithWholeDataset.tsv -> build/lib/HydRa/data
2024-01-18T23:38:21,421   copying HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv -> build/lib/HydRa/data
2024-01-18T23:38:21,628   copying HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv -> build/lib/HydRa/data
2024-01-18T23:38:21,697   copying HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv.bk -> build/lib/HydRa/data
2024-01-18T23:38:21,884   copying HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv -> build/lib/HydRa/data
2024-01-18T23:38:21,917   copying HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv -> build/lib/HydRa/data
2024-01-18T23:38:21,951   copying HydRa/data/Combined10RBPlist_uniprotID_20190716.txt -> build/lib/HydRa/data
2024-01-18T23:38:21,956   copying HydRa/data/Combined8RBPlist_plusOOPSXRNAXsharedRBPs_uniprotID_20190717.txt -> build/lib/HydRa/data
2024-01-18T23:38:21,961   copying HydRa/data/FromOrelOcclRun_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl -> build/lib/HydRa/data
2024-01-18T23:38:21,964   copying HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_avg_zscores_statistics.pkl -> build/lib/HydRa/data
2024-01-18T23:38:21,966   copying HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_scores_statistics.pkl -> build/lib/HydRa/data
2024-01-18T23:38:21,969   copying HydRa/data/HydRa2.0_proteins_with_RBP_categories_RBPflagCorrected_Nov2021_new.tsv -> build/lib/HydRa/data
2024-01-18T23:38:22,044   copying HydRa/data/HydRa_v4_7_3_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl -> build/lib/HydRa/data
2024-01-18T23:38:22,047   copying HydRa/data/STRING_v10.5_uniprot_edgelist_withoutExperimentalData.txt -> build/lib/HydRa/data
2024-01-18T23:38:22,188   copying HydRa/data/SVM_AAC_chi2_alpha0.01_selected_features_From_WholeDataSet_AACname.txt -> build/lib/HydRa/data
2024-01-18T23:38:22,189   copying HydRa/data/SVM_SS_11mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/lib/HydRa/data
2024-01-18T23:38:22,191   copying HydRa/data/SVM_SS_15mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/lib/HydRa/data
2024-01-18T23:38:22,194   copying HydRa/data/SVM_SeqFeature_table_comined_all_selected_features_From_WholeDataset_12Apr_AACname.txt -> build/lib/HydRa/data
2024-01-18T23:38:22,772   copying HydRa/data/SVM_mer3_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/lib/HydRa/data
2024-01-18T23:38:22,774   copying HydRa/data/SVM_mer4_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/lib/HydRa/data
2024-01-18T23:38:22,776   copying HydRa/data/mentha20180108_BioPlex2.0_edgelist.txt -> build/lib/HydRa/data
2024-01-18T23:38:22,843   copying HydRa/data/menthaBioPlex_feature_table_combined10RBPlist.xls -> build/lib/HydRa/data
2024-01-18T23:38:22,874   copying HydRa/data/menthaBioPlex_separatedSTRING_feature_table_combined8RBPlistAddingOOPSXRNAX.xls -> build/lib/HydRa/data
2024-01-18T23:38:22,909   copying HydRa/data/protVec_100d_3grams.csv -> build/lib/HydRa/data
2024-01-18T23:38:23,032   creating build/lib/HydRa/pre_trained
2024-01-18T23:38:23,034   copying HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5 -> build/lib/HydRa/pre_trained
2024-01-18T23:38:23,062   copying HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5 -> build/lib/HydRa/pre_trained
2024-01-18T23:38:23,090   copying HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_structure.json -> build/lib/HydRa/pre_trained
2024-01-18T23:38:23,093   copying HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_weights.h5 -> build/lib/HydRa/pre_trained
2024-01-18T23:38:23,157   copying HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_structure.json -> build/lib/HydRa/pre_trained
2024-01-18T23:38:23,160   copying HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_weights.h5 -> build/lib/HydRa/pre_trained
2024-01-18T23:38:23,220   copying HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5 -> build/lib/HydRa/pre_trained
2024-01-18T23:38:23,223   copying HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5 -> build/lib/HydRa/pre_trained
2024-01-18T23:38:23,227   copying HydRa/pre_trained/SVM_PPI_MB-S_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl -> build/lib/HydRa/pre_trained
2024-01-18T23:38:23,248   copying HydRa/pre_trained/SVM_PPI_MB_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl -> build/lib/HydRa/pre_trained
2024-01-18T23:38:23,264   copying HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pickle.pkl -> build/lib/HydRa/pre_trained
2024-01-18T23:38:27,338   copying HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_ModelFile.pickle.pkl -> build/lib/HydRa/pre_trained
2024-01-18T23:38:29,233   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-01-18T23:38:29,233   !!

2024-01-18T23:38:29,234           ********************************************************************************
2024-01-18T23:38:29,235           Please avoid running ``setup.py`` directly.
2024-01-18T23:38:29,235           Instead, use pypa/build, pypa/installer or other
2024-01-18T23:38:29,236           standards-based tools.

2024-01-18T23:38:29,237           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-01-18T23:38:29,237           ********************************************************************************

2024-01-18T23:38:29,238   !!
2024-01-18T23:38:29,239     self.initialize_options()
2024-01-18T23:38:29,261   installing to build/bdist.linux-armv7l/wheel
2024-01-18T23:38:29,262   running install
2024-01-18T23:38:29,286   running install_lib
2024-01-18T23:38:29,315   creating build/bdist.linux-armv7l
2024-01-18T23:38:29,315   creating build/bdist.linux-armv7l/wheel
2024-01-18T23:38:29,317   creating build/bdist.linux-armv7l/wheel/HydRa
2024-01-18T23:38:29,319   creating build/bdist.linux-armv7l/wheel/HydRa/preprocessing
2024-01-18T23:38:29,320   copying build/lib/HydRa/preprocessing/get_SVM_seq_features.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing
2024-01-18T23:38:29,323   creating build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_selection
2024-01-18T23:38:29,324   copying build/lib/HydRa/preprocessing/Feature_selection/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_selection
2024-01-18T23:38:29,326   copying build/lib/HydRa/preprocessing/Feature_selection/Feature_selection_for_each_feature_after_chi2Filtering_forFinalTraining.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_selection
2024-01-18T23:38:29,328   copying build/lib/HydRa/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing
2024-01-18T23:38:29,330   creating build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2024-01-18T23:38:29,331   copying build/lib/HydRa/preprocessing/Feature_generation/kmer_table_generation.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2024-01-18T23:38:29,333   copying build/lib/HydRa/preprocessing/Feature_generation/AAC_feature_table_generation.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2024-01-18T23:38:29,335   copying build/lib/HydRa/preprocessing/Feature_generation/Secondary_structure_prediction.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2024-01-18T23:38:29,337   copying build/lib/HydRa/preprocessing/Feature_generation/run_get_PPI_feature_mat_MB_STRING_addingOOPSXRNAXlabelsV2.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2024-01-18T23:38:29,339   copying build/lib/HydRa/preprocessing/Feature_generation/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2024-01-18T23:38:29,341   copying build/lib/HydRa/preprocessing/Feature_generation/get_PPI_feature_mat_MB_STRING.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2024-01-18T23:38:29,343   copying build/lib/HydRa/preprocessing/Feature_generation/PPI_feature_generation.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2024-01-18T23:38:29,346   copying build/lib/HydRa/preprocessing/Get_All_selected_SVM_features.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing
2024-01-18T23:38:29,348   copying build/lib/HydRa/preprocessing/predict_SS.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing
2024-01-18T23:38:29,350   copying build/lib/HydRa/preprocessing/PPI_feature_generation.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing
2024-01-18T23:38:29,353   copying build/lib/HydRa/test_data_load.py -> build/bdist.linux-armv7l/wheel/HydRa
2024-01-18T23:38:29,355   creating build/bdist.linux-armv7l/wheel/HydRa/evaluation
2024-01-18T23:38:29,356   copying build/lib/HydRa/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/evaluation
2024-01-18T23:38:29,358   copying build/lib/HydRa/evaluation/ROC_PR_AUC_analysis.py -> build/bdist.linux-armv7l/wheel/HydRa/evaluation
2024-01-18T23:38:29,361   creating build/bdist.linux-armv7l/wheel/HydRa/training
2024-01-18T23:38:29,361   copying build/lib/HydRa/training/train_and_evaluate_HydRa_bk.py -> build/bdist.linux-armv7l/wheel/HydRa/training
2024-01-18T23:38:29,365   copying build/lib/HydRa/training/train_and_evaluate_HydRa2_0.py -> build/bdist.linux-armv7l/wheel/HydRa/training
2024-01-18T23:38:29,368   copying build/lib/HydRa/training/train_HydRa2_0.py -> build/bdist.linux-armv7l/wheel/HydRa/training
2024-01-18T23:38:29,371   copying build/lib/HydRa/training/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/training
2024-01-18T23:38:29,373   copying build/lib/HydRa/training/train_and_evaluate_HydRa.py -> build/bdist.linux-armv7l/wheel/HydRa/training
2024-01-18T23:38:29,376   copying build/lib/HydRa/training/train_HydRa.py -> build/bdist.linux-armv7l/wheel/HydRa/training
2024-01-18T23:38:29,379   copying build/lib/HydRa/HydRa_predict.py -> build/bdist.linux-armv7l/wheel/HydRa
2024-01-18T23:38:29,382   copying build/lib/HydRa/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa
2024-01-18T23:38:29,384   creating build/bdist.linux-armv7l/wheel/HydRa/predictions
2024-01-18T23:38:29,385   copying build/lib/HydRa/predictions/Occlusion_map_v2.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2024-01-18T23:38:29,389   copying build/lib/HydRa/predictions/Occlusion_map.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2024-01-18T23:38:29,392   copying build/lib/HydRa/predictions/Occlusion_map_v3_HydRa2_0.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2024-01-18T23:38:29,396   copying build/lib/HydRa/predictions/Occlusion_1D_analysis_2.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2024-01-18T23:38:29,398   copying build/lib/HydRa/predictions/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2024-01-18T23:38:29,400   copying build/lib/HydRa/predictions/Occlusion_map_v2_HydRa2_0.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2024-01-18T23:38:29,406   creating build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2024-01-18T23:38:29,407   copying build/lib/HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pickle.pkl -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2024-01-18T23:38:32,995   copying build/lib/HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5 -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2024-01-18T23:38:32,998   copying build/lib/HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5 -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2024-01-18T23:38:33,024   copying build/lib/HydRa/pre_trained/SVM_PPI_MB-S_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2024-01-18T23:38:33,041   copying build/lib/HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_ModelFile.pickle.pkl -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2024-01-18T23:38:35,474   copying build/lib/HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5 -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2024-01-18T23:38:35,500   copying build/lib/HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5 -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2024-01-18T23:38:35,503   copying build/lib/HydRa/pre_trained/SVM_PPI_MB_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2024-01-18T23:38:35,519   copying build/lib/HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_structure.json -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2024-01-18T23:38:35,522   copying build/lib/HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_weights.h5 -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2024-01-18T23:38:35,583   copying build/lib/HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_structure.json -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2024-01-18T23:38:35,585   copying build/lib/HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_weights.h5 -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2024-01-18T23:38:35,647   copying build/lib/HydRa/HydRa2_0_predict.py -> build/bdist.linux-armv7l/wheel/HydRa
2024-01-18T23:38:35,650   creating build/bdist.linux-armv7l/wheel/HydRa/models
2024-01-18T23:38:35,651   copying build/lib/HydRa/models/DNN_seq.py -> build/bdist.linux-armv7l/wheel/HydRa/models
2024-01-18T23:38:35,655   copying build/lib/HydRa/models/Sequence_class.py -> build/bdist.linux-armv7l/wheel/HydRa/models
2024-01-18T23:38:35,658   copying build/lib/HydRa/models/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/models
2024-01-18T23:38:35,661   creating build/bdist.linux-armv7l/wheel/HydRa/data
2024-01-18T23:38:35,663   copying build/lib/HydRa/data/HydRa2.0_proteins_with_RBP_categories_RBPflagCorrected_Nov2021_new.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2024-01-18T23:38:35,733   copying build/lib/HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_trainedWithWholeDataset.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2024-01-18T23:38:35,769   copying build/lib/HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_noSS_trainedWithWholeDataset.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2024-01-18T23:38:35,797   copying build/lib/HydRa/data/Combined10RBPlist_uniprotID_20190716.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2024-01-18T23:38:35,802   copying build/lib/HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_menthaBioPlex_STRING.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2024-01-18T23:38:35,824   copying build/lib/HydRa/data/SVM_SS_11mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2024-01-18T23:38:35,826   copying build/lib/HydRa/data/FromOrelOcclRun_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl -> build/bdist.linux-armv7l/wheel/HydRa/data
2024-01-18T23:38:35,828   copying build/lib/HydRa/data/menthaBioPlex_feature_table_combined10RBPlist.xls -> build/bdist.linux-armv7l/wheel/HydRa/data
2024-01-18T23:38:35,859   copying build/lib/HydRa/data/menthaBioPlex_separatedSTRING_feature_table_combined8RBPlistAddingOOPSXRNAX.xls -> build/bdist.linux-armv7l/wheel/HydRa/data
2024-01-18T23:38:35,892   copying build/lib/HydRa/data/protVec_100d_3grams.csv -> build/bdist.linux-armv7l/wheel/HydRa/data
2024-01-18T23:38:36,014   copying build/lib/HydRa/data/SVM_mer3_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2024-01-18T23:38:36,016   copying build/lib/HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_avg_zscores_statistics.pkl -> build/bdist.linux-armv7l/wheel/HydRa/data
2024-01-18T23:38:36,018   copying build/lib/HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2024-01-18T23:38:36,086   copying build/lib/HydRa/data/SVM_SeqFeature_table_comined_all_selected_features_From_WholeDataset_12Apr_AACname.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2024-01-18T23:38:37,338   copying build/lib/HydRa/data/STRING_v10.5_uniprot_edgelist_withoutExperimentalData.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2024-01-18T23:38:37,529   copying build/lib/HydRa/data/mentha20180108_BioPlex2.0_edgelist.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2024-01-18T23:38:37,594   copying build/lib/HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv.bk -> build/bdist.linux-armv7l/wheel/HydRa/data
2024-01-18T23:38:37,769   copying build/lib/HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_scores_statistics.pkl -> build/bdist.linux-armv7l/wheel/HydRa/data
2024-01-18T23:38:37,771   copying build/lib/HydRa/data/SVM_mer4_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2024-01-18T23:38:37,773   copying build/lib/HydRa/data/SVM_SS_15mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2024-01-18T23:38:37,775   copying build/lib/HydRa/data/HydRa_v4_7_3_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl -> build/bdist.linux-armv7l/wheel/HydRa/data
2024-01-18T23:38:37,778   copying build/lib/HydRa/data/SVM_AAC_chi2_alpha0.01_selected_features_From_WholeDataSet_AACname.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2024-01-18T23:38:37,779   copying build/lib/HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_noSS_menthaBioPlex_STRING.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2024-01-18T23:38:37,802   copying build/lib/HydRa/data/Combined8RBPlist_plusOOPSXRNAXsharedRBPs_uniprotID_20190717.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2024-01-18T23:38:37,807   copying build/lib/HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_AddNoSS_trainedWithWholeDataset.xls -> build/bdist.linux-armv7l/wheel/HydRa/data
2024-01-18T23:38:37,934   copying build/lib/HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2024-01-18T23:38:38,091   copying build/lib/HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2024-01-18T23:38:38,122   copying build/lib/HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2024-01-18T23:38:38,153   running install_egg_info
2024-01-18T23:38:38,182   Copying hydra_rbp.egg-info to build/bdist.linux-armv7l/wheel/hydra_rbp-0.1.21.33-py3.11.egg-info
2024-01-18T23:38:38,196   running install_scripts
2024-01-18T23:38:38,215   creating build/bdist.linux-armv7l/wheel/hydra_rbp-0.1.21.33.dist-info/WHEEL
2024-01-18T23:38:38,218   creating '/tmp/pip-wheel-2yvjpi1e/hydra_rbp-0.1.21.33-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-01-18T23:38:38,224   adding 'HydRa/HydRa2_0_predict.py'
2024-01-18T23:38:38,229   adding 'HydRa/HydRa_predict.py'
2024-01-18T23:38:38,232   adding 'HydRa/__init__.py'
2024-01-18T23:38:38,234   adding 'HydRa/test_data_load.py'
2024-01-18T23:38:38,651   adding 'HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_menthaBioPlex_STRING.tsv'
2024-01-18T23:38:39,014   adding 'HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_noSS_menthaBioPlex_STRING.tsv'
2024-01-18T23:38:41,164   adding 'HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_AddNoSS_trainedWithWholeDataset.xls'
2024-01-18T23:38:41,718   adding 'HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_noSS_trainedWithWholeDataset.tsv'
2024-01-18T23:38:42,458   adding 'HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_trainedWithWholeDataset.tsv'
2024-01-18T23:38:45,791   adding 'HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv'
2024-01-18T23:38:46,968   adding 'HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv'
2024-01-18T23:38:50,317   adding 'HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv.bk'
2024-01-18T23:38:50,944   adding 'HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv'
2024-01-18T23:38:51,682   adding 'HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv'
2024-01-18T23:38:51,740   adding 'HydRa/data/Combined10RBPlist_uniprotID_20190716.txt'
2024-01-18T23:38:51,785   adding 'HydRa/data/Combined8RBPlist_plusOOPSXRNAXsharedRBPs_uniprotID_20190717.txt'
2024-01-18T23:38:51,788   adding 'HydRa/data/FromOrelOcclRun_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl'
2024-01-18T23:38:51,789   adding 'HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_avg_zscores_statistics.pkl'
2024-01-18T23:38:51,791   adding 'HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_scores_statistics.pkl'
2024-01-18T23:38:52,899   adding 'HydRa/data/HydRa2.0_proteins_with_RBP_categories_RBPflagCorrected_Nov2021_new.tsv'
2024-01-18T23:38:52,930   adding 'HydRa/data/HydRa_v4_7_3_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl'
2024-01-18T23:38:54,599   adding 'HydRa/data/STRING_v10.5_uniprot_edgelist_withoutExperimentalData.txt'
2024-01-18T23:38:54,662   adding 'HydRa/data/SVM_AAC_chi2_alpha0.01_selected_features_From_WholeDataSet_AACname.txt'
2024-01-18T23:38:54,664   adding 'HydRa/data/SVM_SS_11mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt'
2024-01-18T23:38:54,666   adding 'HydRa/data/SVM_SS_15mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt'
2024-01-18T23:38:57,906   adding 'HydRa/data/SVM_SeqFeature_table_comined_all_selected_features_From_WholeDataset_12Apr_AACname.txt'
2024-01-18T23:38:58,152   adding 'HydRa/data/SVM_mer3_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt'
2024-01-18T23:38:58,154   adding 'HydRa/data/SVM_mer4_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt'
2024-01-18T23:38:59,612   adding 'HydRa/data/mentha20180108_BioPlex2.0_edgelist.txt'
2024-01-18T23:39:00,120   adding 'HydRa/data/menthaBioPlex_feature_table_combined10RBPlist.xls'
2024-01-18T23:39:00,692   adding 'HydRa/data/menthaBioPlex_separatedSTRING_feature_table_combined8RBPlistAddingOOPSXRNAX.xls'
2024-01-18T23:39:03,039   adding 'HydRa/data/protVec_100d_3grams.csv'
2024-01-18T23:39:03,100   adding 'HydRa/evaluation/ROC_PR_AUC_analysis.py'
2024-01-18T23:39:03,107   adding 'HydRa/evaluation/__init__.py'
2024-01-18T23:39:03,112   adding 'HydRa/models/DNN_seq.py'
2024-01-18T23:39:03,116   adding 'HydRa/models/Sequence_class.py'
2024-01-18T23:39:03,118   adding 'HydRa/models/__init__.py'
2024-01-18T23:39:03,359   adding 'HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5'
2024-01-18T23:39:03,593   adding 'HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5'
2024-01-18T23:39:03,605   adding 'HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_structure.json'
2024-01-18T23:39:04,204   adding 'HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_weights.h5'
2024-01-18T23:39:04,230   adding 'HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_structure.json'
2024-01-18T23:39:04,834   adding 'HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_weights.h5'
2024-01-18T23:39:04,968   adding 'HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5'
2024-01-18T23:39:04,974   adding 'HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5'
2024-01-18T23:39:05,071   adding 'HydRa/pre_trained/SVM_PPI_MB-S_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl'
2024-01-18T23:39:05,175   adding 'HydRa/pre_trained/SVM_PPI_MB_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl'
2024-01-18T23:39:11,637   adding 'HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pickle.pkl'
2024-01-18T23:39:14,943   adding 'HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_ModelFile.pickle.pkl'
2024-01-18T23:39:15,360   adding 'HydRa/predictions/Occlusion_1D_analysis_2.py'
2024-01-18T23:39:15,365   adding 'HydRa/predictions/Occlusion_map.py'
2024-01-18T23:39:15,372   adding 'HydRa/predictions/Occlusion_map_v2.py'
2024-01-18T23:39:15,381   adding 'HydRa/predictions/Occlusion_map_v2_HydRa2_0.py'
2024-01-18T23:39:15,392   adding 'HydRa/predictions/Occlusion_map_v3_HydRa2_0.py'
2024-01-18T23:39:15,394   adding 'HydRa/predictions/__init__.py'
2024-01-18T23:39:15,398   adding 'HydRa/preprocessing/Get_All_selected_SVM_features.py'
2024-01-18T23:39:15,401   adding 'HydRa/preprocessing/PPI_feature_generation.py'
2024-01-18T23:39:15,402   adding 'HydRa/preprocessing/__init__.py'
2024-01-18T23:39:15,403   adding 'HydRa/preprocessing/get_SVM_seq_features.py'
2024-01-18T23:39:15,405   adding 'HydRa/preprocessing/predict_SS.py'
2024-01-18T23:39:15,407   adding 'HydRa/preprocessing/Feature_generation/AAC_feature_table_generation.py'
2024-01-18T23:39:15,408   adding 'HydRa/preprocessing/Feature_generation/PPI_feature_generation.py'
2024-01-18T23:39:15,410   adding 'HydRa/preprocessing/Feature_generation/Secondary_structure_prediction.py'
2024-01-18T23:39:15,411   adding 'HydRa/preprocessing/Feature_generation/__init__.py'
2024-01-18T23:39:15,412   adding 'HydRa/preprocessing/Feature_generation/get_PPI_feature_mat_MB_STRING.py'
2024-01-18T23:39:15,414   adding 'HydRa/preprocessing/Feature_generation/kmer_table_generation.py'
2024-01-18T23:39:15,415   adding 'HydRa/preprocessing/Feature_generation/run_get_PPI_feature_mat_MB_STRING_addingOOPSXRNAXlabelsV2.py'
2024-01-18T23:39:15,417   adding 'HydRa/preprocessing/Feature_selection/Feature_selection_for_each_feature_after_chi2Filtering_forFinalTraining.py'
2024-01-18T23:39:15,419   adding 'HydRa/preprocessing/Feature_selection/__init__.py'
2024-01-18T23:39:15,421   adding 'HydRa/training/__init__.py'
2024-01-18T23:39:15,425   adding 'HydRa/training/train_HydRa.py'
2024-01-18T23:39:15,429   adding 'HydRa/training/train_HydRa2_0.py'
2024-01-18T23:39:15,434   adding 'HydRa/training/train_and_evaluate_HydRa.py'
2024-01-18T23:39:15,440   adding 'HydRa/training/train_and_evaluate_HydRa2_0.py'
2024-01-18T23:39:15,445   adding 'HydRa/training/train_and_evaluate_HydRa_bk.py'
2024-01-18T23:39:15,450   adding 'hydra_rbp-0.1.21.33.dist-info/LICENSE'
2024-01-18T23:39:15,452   adding 'hydra_rbp-0.1.21.33.dist-info/METADATA'
2024-01-18T23:39:15,453   adding 'hydra_rbp-0.1.21.33.dist-info/WHEEL'
2024-01-18T23:39:15,454   adding 'hydra_rbp-0.1.21.33.dist-info/entry_points.txt'
2024-01-18T23:39:15,455   adding 'hydra_rbp-0.1.21.33.dist-info/top_level.txt'
2024-01-18T23:39:15,457   adding 'hydra_rbp-0.1.21.33.dist-info/RECORD'
2024-01-18T23:39:15,535   removing build/bdist.linux-armv7l/wheel
2024-01-18T23:39:15,784   Building wheel for hydra-rbp (setup.py): finished with status 'done'
2024-01-18T23:39:17,016   Created wheel for hydra-rbp: filename=hydra_rbp-0.1.21.33-py3-none-any.whl size=53763603 sha256=bb44a445cfe2552b4ee79605c98945b5fd01b3902ae9f65ed3a7c644be59cad3
2024-01-18T23:39:17,017   Stored in directory: /tmp/pip-ephem-wheel-cache-jt9xs8ba/wheels/82/c9/b0/b25d926110bb04373b3f78f7331e0e33aa314126066eaf4b18
2024-01-18T23:39:17,048 Successfully built hydra-rbp
2024-01-18T23:39:18,449 Removed build tracker: '/tmp/pip-build-tracker-opys08u5'