2024-01-23T00:04:35,917 Created temporary directory: /tmp/pip-build-tracker-mqmef4h9 2024-01-23T00:04:35,918 Initialized build tracking at /tmp/pip-build-tracker-mqmef4h9 2024-01-23T00:04:35,918 Created build tracker: /tmp/pip-build-tracker-mqmef4h9 2024-01-23T00:04:35,919 Entered build tracker: /tmp/pip-build-tracker-mqmef4h9 2024-01-23T00:04:35,920 Created temporary directory: /tmp/pip-wheel-4cz_xfjw 2024-01-23T00:04:35,923 Created temporary directory: /tmp/pip-ephem-wheel-cache-u0mtq79c 2024-01-23T00:04:35,945 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-23T00:04:35,948 2 location(s) to search for versions of misato-dataset: 2024-01-23T00:04:35,948 * https://pypi.org/simple/misato-dataset/ 2024-01-23T00:04:35,948 * https://www.piwheels.org/simple/misato-dataset/ 2024-01-23T00:04:35,949 Fetching project page and analyzing links: https://pypi.org/simple/misato-dataset/ 2024-01-23T00:04:35,950 Getting page https://pypi.org/simple/misato-dataset/ 2024-01-23T00:04:35,951 Found index url https://pypi.org/simple/ 2024-01-23T00:04:36,162 Fetched page https://pypi.org/simple/misato-dataset/ as application/vnd.pypi.simple.v1+json 2024-01-23T00:04:36,164 Found link https://files.pythonhosted.org/packages/b6/8e/6522d1782f2cc6efcd06115cb568cd7df6f90313b7afe55b3bf96db74bf6/misato-dataset-0.0.4.tar.gz (from https://pypi.org/simple/misato-dataset/) (requires-python:>=3.10), version: 0.0.4 2024-01-23T00:04:36,165 Skipping link: No binaries permitted for misato-dataset: https://files.pythonhosted.org/packages/71/a6/9afb0b2b43540eed2835eb5bca8d660e889521e90b77a5097e772a42f599/misato_dataset-0.0.4-py3-none-any.whl (from https://pypi.org/simple/misato-dataset/) (requires-python:>=3.10) 2024-01-23T00:04:36,165 Fetching project page and analyzing links: https://www.piwheels.org/simple/misato-dataset/ 2024-01-23T00:04:36,166 Getting page https://www.piwheels.org/simple/misato-dataset/ 2024-01-23T00:04:36,167 Found index url https://www.piwheels.org/simple/ 2024-01-23T00:04:36,327 Fetched page https://www.piwheels.org/simple/misato-dataset/ as text/html 2024-01-23T00:04:36,329 Skipping link: not a file: https://www.piwheels.org/simple/misato-dataset/ 2024-01-23T00:04:36,329 Skipping link: not a file: https://pypi.org/simple/misato-dataset/ 2024-01-23T00:04:36,347 Given no hashes to check 1 links for project 'misato-dataset': discarding no candidates 2024-01-23T00:04:36,365 Collecting misato-dataset==0.0.4 2024-01-23T00:04:36,368 Created temporary directory: /tmp/pip-unpack-rm3mp7pq 2024-01-23T00:04:36,582 Downloading misato-dataset-0.0.4.tar.gz (29 kB) 2024-01-23T00:04:36,657 Added misato-dataset==0.0.4 from https://files.pythonhosted.org/packages/b6/8e/6522d1782f2cc6efcd06115cb568cd7df6f90313b7afe55b3bf96db74bf6/misato-dataset-0.0.4.tar.gz to build tracker '/tmp/pip-build-tracker-mqmef4h9' 2024-01-23T00:04:36,659 Running setup.py (path:/tmp/pip-wheel-4cz_xfjw/misato-dataset_5b75dbd7b41e492891e3deb807d28dda/setup.py) egg_info for package misato-dataset 2024-01-23T00:04:36,660 Created temporary directory: /tmp/pip-pip-egg-info-aahvz0s3 2024-01-23T00:04:36,661 Preparing metadata (setup.py): started 2024-01-23T00:04:36,662 Running command python setup.py egg_info 2024-01-23T00:04:37,167 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'extra_require' 2024-01-23T00:04:37,168 warnings.warn(msg) 2024-01-23T00:04:37,702 running egg_info 2024-01-23T00:04:37,703 creating /tmp/pip-pip-egg-info-aahvz0s3/misato_dataset.egg-info 2024-01-23T00:04:37,731 writing /tmp/pip-pip-egg-info-aahvz0s3/misato_dataset.egg-info/PKG-INFO 2024-01-23T00:04:37,735 writing dependency_links to /tmp/pip-pip-egg-info-aahvz0s3/misato_dataset.egg-info/dependency_links.txt 2024-01-23T00:04:37,737 writing requirements to /tmp/pip-pip-egg-info-aahvz0s3/misato_dataset.egg-info/requires.txt 2024-01-23T00:04:37,738 writing top-level names to /tmp/pip-pip-egg-info-aahvz0s3/misato_dataset.egg-info/top_level.txt 2024-01-23T00:04:37,739 writing manifest file '/tmp/pip-pip-egg-info-aahvz0s3/misato_dataset.egg-info/SOURCES.txt' 2024-01-23T00:04:37,818 reading manifest file '/tmp/pip-pip-egg-info-aahvz0s3/misato_dataset.egg-info/SOURCES.txt' 2024-01-23T00:04:37,820 adding license file 'LICENSE' 2024-01-23T00:04:37,822 writing manifest file '/tmp/pip-pip-egg-info-aahvz0s3/misato_dataset.egg-info/SOURCES.txt' 2024-01-23T00:04:37,930 Preparing metadata (setup.py): finished with status 'done' 2024-01-23T00:04:37,934 Source in /tmp/pip-wheel-4cz_xfjw/misato-dataset_5b75dbd7b41e492891e3deb807d28dda has version 0.0.4, which satisfies requirement misato-dataset==0.0.4 from https://files.pythonhosted.org/packages/b6/8e/6522d1782f2cc6efcd06115cb568cd7df6f90313b7afe55b3bf96db74bf6/misato-dataset-0.0.4.tar.gz 2024-01-23T00:04:37,935 Removed misato-dataset==0.0.4 from https://files.pythonhosted.org/packages/b6/8e/6522d1782f2cc6efcd06115cb568cd7df6f90313b7afe55b3bf96db74bf6/misato-dataset-0.0.4.tar.gz from build tracker '/tmp/pip-build-tracker-mqmef4h9' 2024-01-23T00:04:37,942 Created temporary directory: /tmp/pip-unpack-oc6m47wa 2024-01-23T00:04:37,943 Created temporary directory: /tmp/pip-unpack-687ai7lw 2024-01-23T00:04:37,955 Building wheels for collected packages: misato-dataset 2024-01-23T00:04:37,959 Created temporary directory: /tmp/pip-wheel-2akmqwzm 2024-01-23T00:04:37,959 Building wheel for misato-dataset (setup.py): started 2024-01-23T00:04:37,961 Destination directory: /tmp/pip-wheel-2akmqwzm 2024-01-23T00:04:37,961 Running command python setup.py bdist_wheel 2024-01-23T00:04:38,425 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'extra_require' 2024-01-23T00:04:38,425 warnings.warn(msg) 2024-01-23T00:04:38,933 running bdist_wheel 2024-01-23T00:04:39,025 running build 2024-01-23T00:04:39,026 running build_py 2024-01-23T00:04:39,052 creating build 2024-01-23T00:04:39,053 creating build/lib 2024-01-23T00:04:39,054 creating build/lib/misato_dataset 2024-01-23T00:04:39,055 copying src/misato_dataset/md_datamodule.py -> build/lib/misato_dataset 2024-01-23T00:04:39,057 copying src/misato_dataset/qm_datamodule.py -> build/lib/misato_dataset 2024-01-23T00:04:39,059 copying src/misato_dataset/__init__.py -> build/lib/misato_dataset 2024-01-23T00:04:39,062 creating build/lib/misato_dataset/processing 2024-01-23T00:04:39,063 copying src/misato_dataset/processing/h5_to_pdb.py -> build/lib/misato_dataset/processing 2024-01-23T00:04:39,065 copying src/misato_dataset/processing/inference_QM.py -> build/lib/misato_dataset/processing 2024-01-23T00:04:39,067 copying src/misato_dataset/processing/pdb_to_h5.py -> build/lib/misato_dataset/processing 2024-01-23T00:04:39,070 copying src/misato_dataset/processing/preprocessing_db.py -> build/lib/misato_dataset/processing 2024-01-23T00:04:39,073 copying src/misato_dataset/processing/__init__.py -> build/lib/misato_dataset/processing 2024-01-23T00:04:39,075 creating build/lib/misato_dataset/components 2024-01-23T00:04:39,076 copying src/misato_dataset/components/graph.py -> build/lib/misato_dataset/components 2024-01-23T00:04:39,078 copying src/misato_dataset/components/transformMD.py -> build/lib/misato_dataset/components 2024-01-23T00:04:39,080 copying src/misato_dataset/components/transforms.py -> build/lib/misato_dataset/components 2024-01-23T00:04:39,081 copying src/misato_dataset/components/transformQM.py -> build/lib/misato_dataset/components 2024-01-23T00:04:39,083 copying src/misato_dataset/components/datasets.py -> build/lib/misato_dataset/components 2024-01-23T00:04:39,085 copying src/misato_dataset/components/utils.py -> build/lib/misato_dataset/components 2024-01-23T00:04:39,087 copying src/misato_dataset/components/__init__.py -> build/lib/misato_dataset/components 2024-01-23T00:04:39,114 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-01-23T00:04:39,115 !! 2024-01-23T00:04:39,116 ******************************************************************************** 2024-01-23T00:04:39,116 Please avoid running ``setup.py`` directly. 2024-01-23T00:04:39,117 Instead, use pypa/build, pypa/installer or other 2024-01-23T00:04:39,118 standards-based tools. 2024-01-23T00:04:39,118 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-01-23T00:04:39,119 ******************************************************************************** 2024-01-23T00:04:39,120 !! 2024-01-23T00:04:39,120 self.initialize_options() 2024-01-23T00:04:39,139 installing to build/bdist.linux-armv7l/wheel 2024-01-23T00:04:39,139 running install 2024-01-23T00:04:39,163 running install_lib 2024-01-23T00:04:39,186 creating build/bdist.linux-armv7l 2024-01-23T00:04:39,186 creating build/bdist.linux-armv7l/wheel 2024-01-23T00:04:39,188 creating build/bdist.linux-armv7l/wheel/misato_dataset 2024-01-23T00:04:39,189 copying build/lib/misato_dataset/md_datamodule.py -> build/bdist.linux-armv7l/wheel/misato_dataset 2024-01-23T00:04:39,191 creating build/bdist.linux-armv7l/wheel/misato_dataset/processing 2024-01-23T00:04:39,192 copying build/lib/misato_dataset/processing/h5_to_pdb.py -> build/bdist.linux-armv7l/wheel/misato_dataset/processing 2024-01-23T00:04:39,194 copying build/lib/misato_dataset/processing/inference_QM.py -> build/bdist.linux-armv7l/wheel/misato_dataset/processing 2024-01-23T00:04:39,196 copying build/lib/misato_dataset/processing/pdb_to_h5.py -> build/bdist.linux-armv7l/wheel/misato_dataset/processing 2024-01-23T00:04:39,198 copying build/lib/misato_dataset/processing/preprocessing_db.py -> build/bdist.linux-armv7l/wheel/misato_dataset/processing 2024-01-23T00:04:39,200 copying build/lib/misato_dataset/processing/__init__.py -> build/bdist.linux-armv7l/wheel/misato_dataset/processing 2024-01-23T00:04:39,202 creating build/bdist.linux-armv7l/wheel/misato_dataset/components 2024-01-23T00:04:39,203 copying build/lib/misato_dataset/components/graph.py -> build/bdist.linux-armv7l/wheel/misato_dataset/components 2024-01-23T00:04:39,205 copying build/lib/misato_dataset/components/transformMD.py -> build/bdist.linux-armv7l/wheel/misato_dataset/components 2024-01-23T00:04:39,207 copying build/lib/misato_dataset/components/transforms.py -> build/bdist.linux-armv7l/wheel/misato_dataset/components 2024-01-23T00:04:39,209 copying build/lib/misato_dataset/components/transformQM.py -> build/bdist.linux-armv7l/wheel/misato_dataset/components 2024-01-23T00:04:39,211 copying build/lib/misato_dataset/components/datasets.py -> build/bdist.linux-armv7l/wheel/misato_dataset/components 2024-01-23T00:04:39,213 copying build/lib/misato_dataset/components/utils.py -> build/bdist.linux-armv7l/wheel/misato_dataset/components 2024-01-23T00:04:39,215 copying build/lib/misato_dataset/components/__init__.py -> build/bdist.linux-armv7l/wheel/misato_dataset/components 2024-01-23T00:04:39,216 copying build/lib/misato_dataset/qm_datamodule.py -> build/bdist.linux-armv7l/wheel/misato_dataset 2024-01-23T00:04:39,218 copying build/lib/misato_dataset/__init__.py -> build/bdist.linux-armv7l/wheel/misato_dataset 2024-01-23T00:04:39,220 running install_egg_info 2024-01-23T00:04:39,279 running egg_info 2024-01-23T00:04:39,302 writing src/misato_dataset.egg-info/PKG-INFO 2024-01-23T00:04:39,306 writing dependency_links to src/misato_dataset.egg-info/dependency_links.txt 2024-01-23T00:04:39,308 writing requirements to src/misato_dataset.egg-info/requires.txt 2024-01-23T00:04:39,309 writing top-level names to src/misato_dataset.egg-info/top_level.txt 2024-01-23T00:04:39,336 reading manifest file 'src/misato_dataset.egg-info/SOURCES.txt' 2024-01-23T00:04:39,339 adding license file 'LICENSE' 2024-01-23T00:04:39,341 writing manifest file 'src/misato_dataset.egg-info/SOURCES.txt' 2024-01-23T00:04:39,343 Copying src/misato_dataset.egg-info to build/bdist.linux-armv7l/wheel/misato_dataset-0.0.4-py3.11.egg-info 2024-01-23T00:04:39,352 running install_scripts 2024-01-23T00:04:39,368 creating build/bdist.linux-armv7l/wheel/misato_dataset-0.0.4.dist-info/WHEEL 2024-01-23T00:04:39,370 creating '/tmp/pip-wheel-2akmqwzm/misato_dataset-0.0.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-01-23T00:04:39,372 adding 'misato_dataset/__init__.py' 2024-01-23T00:04:39,374 adding 'misato_dataset/md_datamodule.py' 2024-01-23T00:04:39,376 adding 'misato_dataset/qm_datamodule.py' 2024-01-23T00:04:39,377 adding 'misato_dataset/components/__init__.py' 2024-01-23T00:04:39,379 adding 'misato_dataset/components/datasets.py' 2024-01-23T00:04:39,381 adding 'misato_dataset/components/graph.py' 2024-01-23T00:04:39,382 adding 'misato_dataset/components/transformMD.py' 2024-01-23T00:04:39,383 adding 'misato_dataset/components/transformQM.py' 2024-01-23T00:04:39,385 adding 'misato_dataset/components/transforms.py' 2024-01-23T00:04:39,386 adding 'misato_dataset/components/utils.py' 2024-01-23T00:04:39,387 adding 'misato_dataset/processing/__init__.py' 2024-01-23T00:04:39,389 adding 'misato_dataset/processing/h5_to_pdb.py' 2024-01-23T00:04:39,390 adding 'misato_dataset/processing/inference_QM.py' 2024-01-23T00:04:39,392 adding 'misato_dataset/processing/pdb_to_h5.py' 2024-01-23T00:04:39,394 adding 'misato_dataset/processing/preprocessing_db.py' 2024-01-23T00:04:39,399 adding 'misato_dataset-0.0.4.dist-info/LICENSE' 2024-01-23T00:04:39,401 adding 'misato_dataset-0.0.4.dist-info/METADATA' 2024-01-23T00:04:39,402 adding 'misato_dataset-0.0.4.dist-info/WHEEL' 2024-01-23T00:04:39,403 adding 'misato_dataset-0.0.4.dist-info/top_level.txt' 2024-01-23T00:04:39,404 adding 'misato_dataset-0.0.4.dist-info/RECORD' 2024-01-23T00:04:39,405 removing build/bdist.linux-armv7l/wheel 2024-01-23T00:04:39,522 Building wheel for misato-dataset (setup.py): finished with status 'done' 2024-01-23T00:04:39,525 Created wheel for misato-dataset: filename=misato_dataset-0.0.4-py3-none-any.whl size=38168 sha256=cb664ac697d0852e395f229186b291cd45f481228517eb6ff3699e3ca6b18d10 2024-01-23T00:04:39,526 Stored in directory: /tmp/pip-ephem-wheel-cache-u0mtq79c/wheels/bf/d2/a6/d626b68b8950125a35f685ce99a82922d475cfa7186f253de0 2024-01-23T00:04:39,538 Successfully built misato-dataset 2024-01-23T00:04:39,542 Removed build tracker: '/tmp/pip-build-tracker-mqmef4h9'