2024-01-23T02:17:31,204 Created temporary directory: /tmp/pip-build-tracker-yq1qbl_r
2024-01-23T02:17:31,205 Initialized build tracking at /tmp/pip-build-tracker-yq1qbl_r
2024-01-23T02:17:31,206 Created build tracker: /tmp/pip-build-tracker-yq1qbl_r
2024-01-23T02:17:31,206 Entered build tracker: /tmp/pip-build-tracker-yq1qbl_r
2024-01-23T02:17:31,207 Created temporary directory: /tmp/pip-wheel-z91_ajrt
2024-01-23T02:17:31,210 Created temporary directory: /tmp/pip-ephem-wheel-cache-keuv7hqd
2024-01-23T02:17:31,232 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-01-23T02:17:31,236 2 location(s) to search for versions of misato-dataset:
2024-01-23T02:17:31,236 * https://pypi.org/simple/misato-dataset/
2024-01-23T02:17:31,236 * https://www.piwheels.org/simple/misato-dataset/
2024-01-23T02:17:31,236 Fetching project page and analyzing links: https://pypi.org/simple/misato-dataset/
2024-01-23T02:17:31,237 Getting page https://pypi.org/simple/misato-dataset/
2024-01-23T02:17:31,239 Found index url https://pypi.org/simple/
2024-01-23T02:17:31,458 Fetched page https://pypi.org/simple/misato-dataset/ as application/vnd.pypi.simple.v1+json
2024-01-23T02:17:31,461   Found link https://files.pythonhosted.org/packages/b6/8e/6522d1782f2cc6efcd06115cb568cd7df6f90313b7afe55b3bf96db74bf6/misato-dataset-0.0.4.tar.gz (from https://pypi.org/simple/misato-dataset/) (requires-python:>=3.10), version: 0.0.4
2024-01-23T02:17:31,462   Skipping link: No binaries permitted for misato-dataset: https://files.pythonhosted.org/packages/71/a6/9afb0b2b43540eed2835eb5bca8d660e889521e90b77a5097e772a42f599/misato_dataset-0.0.4-py3-none-any.whl (from https://pypi.org/simple/misato-dataset/) (requires-python:>=3.10)
2024-01-23T02:17:31,463   Found link https://files.pythonhosted.org/packages/2e/c8/ff285107e76c0aaf8a2c6013e00cfa90b9b4894cce9647d2866b4878e1d6/misato-dataset-0.0.5.tar.gz (from https://pypi.org/simple/misato-dataset/) (requires-python:>=3.10), version: 0.0.5
2024-01-23T02:17:31,464   Skipping link: No binaries permitted for misato-dataset: https://files.pythonhosted.org/packages/ff/7c/14fcefed72cd4b9d1a2a1895d914c4795d1f46654476b0cadecbdf7f7bc5/misato_dataset-0.0.5-py3-none-any.whl (from https://pypi.org/simple/misato-dataset/) (requires-python:>=3.10)
2024-01-23T02:17:31,464   Found link https://files.pythonhosted.org/packages/14/47/66fabf4e85649eddb321acc7fa636f0b39c2eae017d06526885cf0587fb8/misato-dataset-0.0.6.tar.gz (from https://pypi.org/simple/misato-dataset/) (requires-python:>=3.10), version: 0.0.6
2024-01-23T02:17:31,465   Skipping link: No binaries permitted for misato-dataset: https://files.pythonhosted.org/packages/9e/96/a7e8c65595daeb6e49ffe3735cd2b05bc1aad83cbfe8bdef9af83b898c35/misato_dataset-0.0.6-py3-none-any.whl (from https://pypi.org/simple/misato-dataset/) (requires-python:>=3.10)
2024-01-23T02:17:31,466   Found link https://files.pythonhosted.org/packages/21/2f/75d840b10148c2377a4d982b82aa4332c6433f85215d486ddf18f0e6c0cf/misato-dataset-0.0.7.tar.gz (from https://pypi.org/simple/misato-dataset/) (requires-python:>=3.10), version: 0.0.7
2024-01-23T02:17:31,467   Skipping link: No binaries permitted for misato-dataset: https://files.pythonhosted.org/packages/0d/c8/8a4bfc619477a58280171e0d1d49f3efbb979aa2fe904dab7b00def1c690/misato_dataset-0.0.7-py3-none-any.whl (from https://pypi.org/simple/misato-dataset/) (requires-python:>=3.10)
2024-01-23T02:17:31,468 Fetching project page and analyzing links: https://www.piwheels.org/simple/misato-dataset/
2024-01-23T02:17:31,468 Getting page https://www.piwheels.org/simple/misato-dataset/
2024-01-23T02:17:31,470 Found index url https://www.piwheels.org/simple/
2024-01-23T02:17:31,627 Fetched page https://www.piwheels.org/simple/misato-dataset/ as text/html
2024-01-23T02:17:31,629   Skipping link: No binaries permitted for misato-dataset: https://www.piwheels.org/simple/misato-dataset/misato_dataset-0.0.4-py3-none-any.whl#sha256=cb664ac697d0852e395f229186b291cd45f481228517eb6ff3699e3ca6b18d10 (from https://www.piwheels.org/simple/misato-dataset/) (requires-python:>=3.10)
2024-01-23T02:17:31,630 Skipping link: not a file: https://www.piwheels.org/simple/misato-dataset/
2024-01-23T02:17:31,631 Skipping link: not a file: https://pypi.org/simple/misato-dataset/
2024-01-23T02:17:31,649 Given no hashes to check 1 links for project 'misato-dataset': discarding no candidates
2024-01-23T02:17:31,667 Collecting misato-dataset==0.0.5
2024-01-23T02:17:31,669   Created temporary directory: /tmp/pip-unpack-1xhrzd7f
2024-01-23T02:17:31,894   Downloading misato-dataset-0.0.5.tar.gz (29 kB)
2024-01-23T02:17:31,965   Added misato-dataset==0.0.5 from https://files.pythonhosted.org/packages/2e/c8/ff285107e76c0aaf8a2c6013e00cfa90b9b4894cce9647d2866b4878e1d6/misato-dataset-0.0.5.tar.gz to build tracker '/tmp/pip-build-tracker-yq1qbl_r'
2024-01-23T02:17:31,967   Running setup.py (path:/tmp/pip-wheel-z91_ajrt/misato-dataset_4c73820e44504cac95f0ef321e113f91/setup.py) egg_info for package misato-dataset
2024-01-23T02:17:31,968   Created temporary directory: /tmp/pip-pip-egg-info-jaoyfguo
2024-01-23T02:17:31,968   Preparing metadata (setup.py): started
2024-01-23T02:17:31,969   Running command python setup.py egg_info
2024-01-23T02:17:32,445   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'extra_require'
2024-01-23T02:17:32,445     warnings.warn(msg)
2024-01-23T02:17:32,969   running egg_info
2024-01-23T02:17:32,970   creating /tmp/pip-pip-egg-info-jaoyfguo/misato_dataset.egg-info
2024-01-23T02:17:32,994   writing /tmp/pip-pip-egg-info-jaoyfguo/misato_dataset.egg-info/PKG-INFO
2024-01-23T02:17:32,998   writing dependency_links to /tmp/pip-pip-egg-info-jaoyfguo/misato_dataset.egg-info/dependency_links.txt
2024-01-23T02:17:33,000   writing requirements to /tmp/pip-pip-egg-info-jaoyfguo/misato_dataset.egg-info/requires.txt
2024-01-23T02:17:33,001   writing top-level names to /tmp/pip-pip-egg-info-jaoyfguo/misato_dataset.egg-info/top_level.txt
2024-01-23T02:17:33,002   writing manifest file '/tmp/pip-pip-egg-info-jaoyfguo/misato_dataset.egg-info/SOURCES.txt'
2024-01-23T02:17:33,080   reading manifest file '/tmp/pip-pip-egg-info-jaoyfguo/misato_dataset.egg-info/SOURCES.txt'
2024-01-23T02:17:33,082   adding license file 'LICENSE'
2024-01-23T02:17:33,084   writing manifest file '/tmp/pip-pip-egg-info-jaoyfguo/misato_dataset.egg-info/SOURCES.txt'
2024-01-23T02:17:33,192   Preparing metadata (setup.py): finished with status 'done'
2024-01-23T02:17:33,197   Source in /tmp/pip-wheel-z91_ajrt/misato-dataset_4c73820e44504cac95f0ef321e113f91 has version 0.0.5, which satisfies requirement misato-dataset==0.0.5 from https://files.pythonhosted.org/packages/2e/c8/ff285107e76c0aaf8a2c6013e00cfa90b9b4894cce9647d2866b4878e1d6/misato-dataset-0.0.5.tar.gz
2024-01-23T02:17:33,198   Removed misato-dataset==0.0.5 from https://files.pythonhosted.org/packages/2e/c8/ff285107e76c0aaf8a2c6013e00cfa90b9b4894cce9647d2866b4878e1d6/misato-dataset-0.0.5.tar.gz from build tracker '/tmp/pip-build-tracker-yq1qbl_r'
2024-01-23T02:17:33,205 Created temporary directory: /tmp/pip-unpack-3hu213a7
2024-01-23T02:17:33,206 Created temporary directory: /tmp/pip-unpack-xtc5l0k4
2024-01-23T02:17:33,218 Building wheels for collected packages: misato-dataset
2024-01-23T02:17:33,223   Created temporary directory: /tmp/pip-wheel-b_tnxh0q
2024-01-23T02:17:33,223   Building wheel for misato-dataset (setup.py): started
2024-01-23T02:17:33,225   Destination directory: /tmp/pip-wheel-b_tnxh0q
2024-01-23T02:17:33,225   Running command python setup.py bdist_wheel
2024-01-23T02:17:33,694   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'extra_require'
2024-01-23T02:17:33,694     warnings.warn(msg)
2024-01-23T02:17:34,214   running bdist_wheel
2024-01-23T02:17:34,307   running build
2024-01-23T02:17:34,308   running build_py
2024-01-23T02:17:34,334   creating build
2024-01-23T02:17:34,335   creating build/lib
2024-01-23T02:17:34,336   creating build/lib/misato_dataset
2024-01-23T02:17:34,337   copying src/misato_dataset/md_datamodule.py -> build/lib/misato_dataset
2024-01-23T02:17:34,339   copying src/misato_dataset/qm_datamodule.py -> build/lib/misato_dataset
2024-01-23T02:17:34,341   copying src/misato_dataset/__init__.py -> build/lib/misato_dataset
2024-01-23T02:17:34,344   creating build/lib/misato_dataset/components
2024-01-23T02:17:34,345   copying src/misato_dataset/components/transforms.py -> build/lib/misato_dataset/components
2024-01-23T02:17:34,347   copying src/misato_dataset/components/datasets.py -> build/lib/misato_dataset/components
2024-01-23T02:17:34,349   copying src/misato_dataset/components/graph.py -> build/lib/misato_dataset/components
2024-01-23T02:17:34,351   copying src/misato_dataset/components/transformMD.py -> build/lib/misato_dataset/components
2024-01-23T02:17:34,352   copying src/misato_dataset/components/__init__.py -> build/lib/misato_dataset/components
2024-01-23T02:17:34,354   copying src/misato_dataset/components/transformQM.py -> build/lib/misato_dataset/components
2024-01-23T02:17:34,356   copying src/misato_dataset/components/utils.py -> build/lib/misato_dataset/components
2024-01-23T02:17:34,358   creating build/lib/misato_dataset/processing
2024-01-23T02:17:34,359   copying src/misato_dataset/processing/pdb_to_h5.py -> build/lib/misato_dataset/processing
2024-01-23T02:17:34,361   copying src/misato_dataset/processing/__init__.py -> build/lib/misato_dataset/processing
2024-01-23T02:17:34,362   copying src/misato_dataset/processing/inference_QM.py -> build/lib/misato_dataset/processing
2024-01-23T02:17:34,364   copying src/misato_dataset/processing/preprocessing_db.py -> build/lib/misato_dataset/processing
2024-01-23T02:17:34,367   copying src/misato_dataset/processing/h5_to_pdb.py -> build/lib/misato_dataset/processing
2024-01-23T02:17:34,396   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-01-23T02:17:34,397   !!

2024-01-23T02:17:34,398           ********************************************************************************
2024-01-23T02:17:34,398           Please avoid running ``setup.py`` directly.
2024-01-23T02:17:34,399           Instead, use pypa/build, pypa/installer or other
2024-01-23T02:17:34,400           standards-based tools.

2024-01-23T02:17:34,401           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-01-23T02:17:34,401           ********************************************************************************

2024-01-23T02:17:34,402   !!
2024-01-23T02:17:34,403     self.initialize_options()
2024-01-23T02:17:34,421   installing to build/bdist.linux-armv7l/wheel
2024-01-23T02:17:34,422   running install
2024-01-23T02:17:34,445   running install_lib
2024-01-23T02:17:34,469   creating build/bdist.linux-armv7l
2024-01-23T02:17:34,470   creating build/bdist.linux-armv7l/wheel
2024-01-23T02:17:34,471   creating build/bdist.linux-armv7l/wheel/misato_dataset
2024-01-23T02:17:34,472   copying build/lib/misato_dataset/md_datamodule.py -> build/bdist.linux-armv7l/wheel/misato_dataset
2024-01-23T02:17:34,475   copying build/lib/misato_dataset/qm_datamodule.py -> build/bdist.linux-armv7l/wheel/misato_dataset
2024-01-23T02:17:34,477   copying build/lib/misato_dataset/__init__.py -> build/bdist.linux-armv7l/wheel/misato_dataset
2024-01-23T02:17:34,479   creating build/bdist.linux-armv7l/wheel/misato_dataset/components
2024-01-23T02:17:34,480   copying build/lib/misato_dataset/components/transforms.py -> build/bdist.linux-armv7l/wheel/misato_dataset/components
2024-01-23T02:17:34,482   copying build/lib/misato_dataset/components/datasets.py -> build/bdist.linux-armv7l/wheel/misato_dataset/components
2024-01-23T02:17:34,485   copying build/lib/misato_dataset/components/graph.py -> build/bdist.linux-armv7l/wheel/misato_dataset/components
2024-01-23T02:17:34,487   copying build/lib/misato_dataset/components/transformMD.py -> build/bdist.linux-armv7l/wheel/misato_dataset/components
2024-01-23T02:17:34,489   copying build/lib/misato_dataset/components/__init__.py -> build/bdist.linux-armv7l/wheel/misato_dataset/components
2024-01-23T02:17:34,490   copying build/lib/misato_dataset/components/transformQM.py -> build/bdist.linux-armv7l/wheel/misato_dataset/components
2024-01-23T02:17:34,492   copying build/lib/misato_dataset/components/utils.py -> build/bdist.linux-armv7l/wheel/misato_dataset/components
2024-01-23T02:17:34,495   creating build/bdist.linux-armv7l/wheel/misato_dataset/processing
2024-01-23T02:17:34,495   copying build/lib/misato_dataset/processing/pdb_to_h5.py -> build/bdist.linux-armv7l/wheel/misato_dataset/processing
2024-01-23T02:17:34,498   copying build/lib/misato_dataset/processing/__init__.py -> build/bdist.linux-armv7l/wheel/misato_dataset/processing
2024-01-23T02:17:34,499   copying build/lib/misato_dataset/processing/inference_QM.py -> build/bdist.linux-armv7l/wheel/misato_dataset/processing
2024-01-23T02:17:34,501   copying build/lib/misato_dataset/processing/preprocessing_db.py -> build/bdist.linux-armv7l/wheel/misato_dataset/processing
2024-01-23T02:17:34,504   copying build/lib/misato_dataset/processing/h5_to_pdb.py -> build/bdist.linux-armv7l/wheel/misato_dataset/processing
2024-01-23T02:17:34,506   running install_egg_info
2024-01-23T02:17:34,566   running egg_info
2024-01-23T02:17:34,589   writing src/misato_dataset.egg-info/PKG-INFO
2024-01-23T02:17:34,592   writing dependency_links to src/misato_dataset.egg-info/dependency_links.txt
2024-01-23T02:17:34,595   writing requirements to src/misato_dataset.egg-info/requires.txt
2024-01-23T02:17:34,596   writing top-level names to src/misato_dataset.egg-info/top_level.txt
2024-01-23T02:17:34,624   reading manifest file 'src/misato_dataset.egg-info/SOURCES.txt'
2024-01-23T02:17:34,626   adding license file 'LICENSE'
2024-01-23T02:17:34,629   writing manifest file 'src/misato_dataset.egg-info/SOURCES.txt'
2024-01-23T02:17:34,630   Copying src/misato_dataset.egg-info to build/bdist.linux-armv7l/wheel/misato_dataset-0.0.5-py3.11.egg-info
2024-01-23T02:17:34,640   running install_scripts
2024-01-23T02:17:34,656   creating build/bdist.linux-armv7l/wheel/misato_dataset-0.0.5.dist-info/WHEEL
2024-01-23T02:17:34,659   creating '/tmp/pip-wheel-b_tnxh0q/misato_dataset-0.0.5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-01-23T02:17:34,661   adding 'misato_dataset/__init__.py'
2024-01-23T02:17:34,663   adding 'misato_dataset/md_datamodule.py'
2024-01-23T02:17:34,664   adding 'misato_dataset/qm_datamodule.py'
2024-01-23T02:17:34,666   adding 'misato_dataset/components/__init__.py'
2024-01-23T02:17:34,667   adding 'misato_dataset/components/datasets.py'
2024-01-23T02:17:34,669   adding 'misato_dataset/components/graph.py'
2024-01-23T02:17:34,671   adding 'misato_dataset/components/transformMD.py'
2024-01-23T02:17:34,672   adding 'misato_dataset/components/transformQM.py'
2024-01-23T02:17:34,673   adding 'misato_dataset/components/transforms.py'
2024-01-23T02:17:34,675   adding 'misato_dataset/components/utils.py'
2024-01-23T02:17:34,676   adding 'misato_dataset/processing/__init__.py'
2024-01-23T02:17:34,678   adding 'misato_dataset/processing/h5_to_pdb.py'
2024-01-23T02:17:34,680   adding 'misato_dataset/processing/inference_QM.py'
2024-01-23T02:17:34,681   adding 'misato_dataset/processing/pdb_to_h5.py'
2024-01-23T02:17:34,684   adding 'misato_dataset/processing/preprocessing_db.py'
2024-01-23T02:17:34,688   adding 'misato_dataset-0.0.5.dist-info/LICENSE'
2024-01-23T02:17:34,690   adding 'misato_dataset-0.0.5.dist-info/METADATA'
2024-01-23T02:17:34,691   adding 'misato_dataset-0.0.5.dist-info/WHEEL'
2024-01-23T02:17:34,692   adding 'misato_dataset-0.0.5.dist-info/top_level.txt'
2024-01-23T02:17:34,693   adding 'misato_dataset-0.0.5.dist-info/RECORD'
2024-01-23T02:17:34,695   removing build/bdist.linux-armv7l/wheel
2024-01-23T02:17:34,812   Building wheel for misato-dataset (setup.py): finished with status 'done'
2024-01-23T02:17:34,815   Created wheel for misato-dataset: filename=misato_dataset-0.0.5-py3-none-any.whl size=38199 sha256=bbfb1d164f02c98ca53bcbc9fc3b8994ee9e6d251fdb9cfac20032cff6dd237d
2024-01-23T02:17:34,816   Stored in directory: /tmp/pip-ephem-wheel-cache-keuv7hqd/wheels/8a/4e/bc/470aee659ec69a2bc6a2f73e3ddb1298a529ffb146af35a692
2024-01-23T02:17:34,829 Successfully built misato-dataset
2024-01-23T02:17:34,833 Removed build tracker: '/tmp/pip-build-tracker-yq1qbl_r'