2024-01-24T16:19:15,556 Created temporary directory: /tmp/pip-build-tracker-rg15k13w 2024-01-24T16:19:15,557 Initialized build tracking at /tmp/pip-build-tracker-rg15k13w 2024-01-24T16:19:15,557 Created build tracker: /tmp/pip-build-tracker-rg15k13w 2024-01-24T16:19:15,558 Entered build tracker: /tmp/pip-build-tracker-rg15k13w 2024-01-24T16:19:15,558 Created temporary directory: /tmp/pip-wheel-t405cs67 2024-01-24T16:19:15,562 Created temporary directory: /tmp/pip-ephem-wheel-cache-qgqhuczy 2024-01-24T16:19:15,584 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-24T16:19:15,587 2 location(s) to search for versions of mitos: 2024-01-24T16:19:15,587 * https://pypi.org/simple/mitos/ 2024-01-24T16:19:15,587 * https://www.piwheels.org/simple/mitos/ 2024-01-24T16:19:15,588 Fetching project page and analyzing links: https://pypi.org/simple/mitos/ 2024-01-24T16:19:15,589 Getting page https://pypi.org/simple/mitos/ 2024-01-24T16:19:15,590 Found index url https://pypi.org/simple/ 2024-01-24T16:19:15,808 Fetched page https://pypi.org/simple/mitos/ as application/vnd.pypi.simple.v1+json 2024-01-24T16:19:15,814 Skipping link: No binaries permitted for mitos: https://files.pythonhosted.org/packages/ae/2d/5f1e66a046e59cf6088f44d4a02cae66d498e226365af5fd42e2d660a814/mitos-1.0-py2-none-any.whl (from https://pypi.org/simple/mitos/) 2024-01-24T16:19:15,814 Found link https://files.pythonhosted.org/packages/c5/6e/e1aae4079b0ebbce64897f54f5cd4a3953a0cb741026d16e14e7ae272a48/mitos-1.0.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0 2024-01-24T16:19:15,815 Found link https://files.pythonhosted.org/packages/d7/19/816780e09ecc6a783f146d80bcde73eb7940d074f4feea137ec954bfd437/mitos-1.0.1.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.1 2024-01-24T16:19:15,815 Found link https://files.pythonhosted.org/packages/38/c7/3dd90bcf0d61c69226ef1632baa3ad0e96d798de36053b4b56ed7660dfdb/mitos-1.0.2.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.2 2024-01-24T16:19:15,816 Found link https://files.pythonhosted.org/packages/e2/d4/864af2605cc1f45cc78cfed740bbdfba1da59ea9a42c24ef5077c9218501/mitos-1.0.3.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.3 2024-01-24T16:19:15,817 Found link https://files.pythonhosted.org/packages/8d/32/1aa5eb88f964c3cf5441622648cc4ae30f115db32bdd5dc5bf194a3c112c/mitos-1.0.4.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.4 2024-01-24T16:19:15,818 Found link https://files.pythonhosted.org/packages/ff/49/f4c711126604aa86abeeda44378786a0903bc53970acf4afa5feb68f72b8/mitos-1.0.5.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.5 2024-01-24T16:19:15,818 Skipping link: No binaries permitted for mitos: https://files.pythonhosted.org/packages/c3/cd/96e0e1ad1551b8fff56ab89e61231809494dec3ee80f51117b4f5d432452/mitos-1.1.0-py3-none-any.whl (from https://pypi.org/simple/mitos/) 2024-01-24T16:19:15,819 Found link https://files.pythonhosted.org/packages/ce/33/46fd40fd9f4c11f5bf296c2c092f59e36dee233d71a0f032b34c2a64c7ba/mitos-1.1.0.tar.gz (from https://pypi.org/simple/mitos/), version: 1.1.0 2024-01-24T16:19:15,820 Found link https://files.pythonhosted.org/packages/b3/a0/5268d8fec841240195c19e704b552a8b3060768c6710c67c67350ea60f13/mitos-1.1.1.tar.gz (from https://pypi.org/simple/mitos/), version: 1.1.1 2024-01-24T16:19:15,821 Found link https://files.pythonhosted.org/packages/7c/38/4431d42c178a65b3710531867f10ae50c5a49408ccab6c058af277e83e5d/mitos-1.1.2.tar.gz (from https://pypi.org/simple/mitos/), version: 1.1.2 2024-01-24T16:19:15,821 Found link https://files.pythonhosted.org/packages/76/40/e0db56e8dfc65a2a13c8f613c4b5839247b918a1cd5d83b384a6c957928e/mitos-1.1.3.tar.gz (from https://pypi.org/simple/mitos/), version: 1.1.3 2024-01-24T16:19:15,822 Found link https://files.pythonhosted.org/packages/fc/39/368668a4250e85f2a596f996a4067528a2e13ad69d18404d4dac5ca4118f/mitos-1.1.4.tar.gz (from https://pypi.org/simple/mitos/), version: 1.1.4 2024-01-24T16:19:15,823 Found link https://files.pythonhosted.org/packages/f3/fa/7e2b9cef0d99e7792077a4c1116dc9bbe4c085e7b89ea79b74474c00b2b1/mitos-2.0.1.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.1 2024-01-24T16:19:15,823 Found link https://files.pythonhosted.org/packages/d7/53/5d215fe8689055dd329a27202f9dc7f66e23548f3d2ad3fa55d98dc56988/mitos-2.0.2.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.2 2024-01-24T16:19:15,824 Found link https://files.pythonhosted.org/packages/cd/97/a8bf95d5e26b51071d9f342dc475891425b223b6add347a6dbf9412937f1/mitos-2.0.3.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.3 2024-01-24T16:19:15,825 Found link https://files.pythonhosted.org/packages/39/9f/6cdac19a8d50915e2e5285b447077459af9c6524f980ded6657dc205593d/mitos-2.0.4.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.4 2024-01-24T16:19:15,825 Found link https://files.pythonhosted.org/packages/d0/16/8040a37887377e3992b0874ab441af54e16030fd23eb844bbf5293597c99/mitos-2.0.5.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.5 2024-01-24T16:19:15,826 Found link https://files.pythonhosted.org/packages/40/ef/5a93579c1ebc63ca8fe71cfe541bca389a0f9410b9a2c1ceff148f83af79/mitos-2.0.6.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.6 2024-01-24T16:19:15,826 Found link https://files.pythonhosted.org/packages/1f/a2/32eb96227aae3a719794cc922d839b8c38ee5c315087bf095792c48f996d/mitos-2.0.7.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.7 2024-01-24T16:19:15,827 Found link https://files.pythonhosted.org/packages/d5/7f/b3e5c5c83352beb13677186899379de3c50a2222dc8faac16632f600d4b6/mitos-2.0.8.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.8 2024-01-24T16:19:15,828 Skipping link: No binaries permitted for mitos: https://files.pythonhosted.org/packages/9d/93/5f2a1097bfa507acbf7dd6ac677f6df14df61692cccb42d28c34edb7ca5b/mitos-2.1.0-py3-none-any.whl (from https://pypi.org/simple/mitos/) 2024-01-24T16:19:15,828 Found link https://files.pythonhosted.org/packages/f8/f4/2950dea175f0bda896b88ac2ac13007a1d007252a583ddd328b176fb54a5/mitos-2.1.0.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.0 2024-01-24T16:19:15,829 Found link https://files.pythonhosted.org/packages/57/78/2fde036a6c767aa5fb8c1102526af749ee13ad426b295289265c548384f9/mitos-2.1.1.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.1 2024-01-24T16:19:15,829 Found link https://files.pythonhosted.org/packages/74/63/f90f359df86c01e68f5c678eef30d929b9311e7bb80f16071a1532515a0a/mitos-2.1.2.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.2 2024-01-24T16:19:15,830 Found link https://files.pythonhosted.org/packages/d6/1f/b6dbc4704555e91e3efa3184fc90b04e901dc6e787c37091d445dd50bd4b/mitos-2.1.3.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.3 2024-01-24T16:19:15,831 Found link https://files.pythonhosted.org/packages/ff/1f/af7beaaaa133f2f55cdbfbf5430c0e9a3102b101dd0a8d2c6f22376af56b/mitos-2.1.4.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.4 2024-01-24T16:19:15,831 Found link https://files.pythonhosted.org/packages/c9/6d/853d05a3ec8c81c73bb23ba0862ded05aa4c2fdc74cdc796c982c6896476/mitos-2.1.5.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.5 2024-01-24T16:19:15,832 Found link https://files.pythonhosted.org/packages/96/9a/97d5e59e6680b450e24d0c3313f112b8818f7d2f6c6fbc90d685cf7fe47c/mitos-2.1.6.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.6 2024-01-24T16:19:15,833 Found link https://files.pythonhosted.org/packages/ae/13/4befcffdab2028eaed3986939d74736846d66cde1d2c66a464d03a70c860/mitos-2.1.7.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.7 2024-01-24T16:19:15,834 Fetching project page and analyzing links: https://www.piwheels.org/simple/mitos/ 2024-01-24T16:19:15,834 Getting page https://www.piwheels.org/simple/mitos/ 2024-01-24T16:19:15,836 Found index url https://www.piwheels.org/simple/ 2024-01-24T16:19:15,998 Fetched page https://www.piwheels.org/simple/mitos/ as text/html 2024-01-24T16:19:16,005 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.6-py3-none-any.whl#sha256=bed8aeda4eebf1ce891081ec67cf34897f2e5da8800cfb51c78593616a3304ea (from https://www.piwheels.org/simple/mitos/) 2024-01-24T16:19:16,006 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.5-py3-none-any.whl#sha256=c404e62da7a2d919a7cf0999ba3ce479541d935e38999ed75c09dc9a38f6b6bd (from https://www.piwheels.org/simple/mitos/) 2024-01-24T16:19:16,007 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.4-py3-none-any.whl#sha256=249c87e42350fbefa1e3281d0e81f795c7710a95303b226bdc818b51615162e0 (from https://www.piwheels.org/simple/mitos/) 2024-01-24T16:19:16,007 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.3-py3-none-any.whl#sha256=dd19f4a9b02b695465d7d7861d7f611d1c73f231e6205b881d1617cd733bdd87 (from https://www.piwheels.org/simple/mitos/) 2024-01-24T16:19:16,008 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.2-py3-none-any.whl#sha256=c98234624cb7939861858030fbac10b88073159ea24b334b42e1cfd70254088d (from https://www.piwheels.org/simple/mitos/) 2024-01-24T16:19:16,008 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.1-py3-none-any.whl#sha256=698670abccda0918af0b490888cb195f86172e217766c9672bfedae33666ac82 (from https://www.piwheels.org/simple/mitos/) 2024-01-24T16:19:16,009 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.0-py3-none-any.whl#sha256=d4b006045b98620155cbed38de6ecf0d0ffb030cebc4d6e6e947cb015b8ce746 (from https://www.piwheels.org/simple/mitos/) 2024-01-24T16:19:16,009 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.8-py3-none-any.whl#sha256=5e88aa49c5bba746d511e0e619295e3c59916c71ba94246f984e44dcfef6a06c (from https://www.piwheels.org/simple/mitos/) 2024-01-24T16:19:16,010 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.7-py3-none-any.whl#sha256=97e98856e946735f44b3df83d67645e0dac8b411edb7774df74c00a44832e1d6 (from https://www.piwheels.org/simple/mitos/) 2024-01-24T16:19:16,010 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.6-py3-none-any.whl#sha256=8fba2e7cf9c22c6a728a1f8141764a77a6a4a27d7f7e50106b6e43832857b149 (from https://www.piwheels.org/simple/mitos/) 2024-01-24T16:19:16,011 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.5-py3-none-any.whl#sha256=ed4998969ebae7bf1688b78cdac8f19ca359f123ea79c2acd2654dd454a53f22 (from https://www.piwheels.org/simple/mitos/) 2024-01-24T16:19:16,012 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.4-py3-none-any.whl#sha256=71ac10ffdc0a236d68e4fd82a700ae35a92f0b23a09242c8b99485ccbadb10cc (from https://www.piwheels.org/simple/mitos/) 2024-01-24T16:19:16,012 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.3-py3-none-any.whl#sha256=4da7d3530901e0732adc63ab4afa0c5d9a40558469b2ccee71ea4fbad466603b (from https://www.piwheels.org/simple/mitos/) 2024-01-24T16:19:16,013 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.2-py3-none-any.whl#sha256=0cd775b72e2dca4acf2f9c6f4d591abaeb00b983e4882fcf536d934a8263d342 (from https://www.piwheels.org/simple/mitos/) 2024-01-24T16:19:16,013 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.1-py3-none-any.whl#sha256=307713427f698c0f3449d782d86287f1494fd2ff773a9fc407fbd29a0de53aed (from https://www.piwheels.org/simple/mitos/) 2024-01-24T16:19:16,014 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.1.4-py3-none-any.whl#sha256=94e72cf1eb3cbbe067f3996d78d50a7fe9e91350bbd146f7babf90321ecb9ffc (from https://www.piwheels.org/simple/mitos/) 2024-01-24T16:19:16,015 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.1.3-py3-none-any.whl#sha256=92bec0ea93c83f4d494767e69401c1dcc1dd8f562917c3d110ec0a525d142a6a (from https://www.piwheels.org/simple/mitos/) 2024-01-24T16:19:16,015 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.1.2-py3-none-any.whl#sha256=b237b128b553848c12c5d387b10a20bbcb734b8672b3bf56fb2f3995e169c03d (from https://www.piwheels.org/simple/mitos/) 2024-01-24T16:19:16,016 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.1.1-py3-none-any.whl#sha256=f0970e0e530a2a7759daafc81f1c79460dc85d15c1f34551d8394dce187dfe1c (from https://www.piwheels.org/simple/mitos/) 2024-01-24T16:19:16,016 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.1.0-py3-none-any.whl#sha256=424b5172258baf2837d8a45e89224c12fdc3cc2a8f4ba0894e5c74111e754e5d (from https://www.piwheels.org/simple/mitos/) 2024-01-24T16:19:16,017 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.5-py3-none-any.whl#sha256=f27a041efc520420cbffbb63a6c428a2ace092d6ffdc47942d6b9c434a281629 (from https://www.piwheels.org/simple/mitos/) 2024-01-24T16:19:16,017 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.4-py3-none-any.whl#sha256=4c35b6595c7a62189502f6becaed4b2fe147f7ed6c6ee8d6b69fb4fda5e2139a (from https://www.piwheels.org/simple/mitos/) 2024-01-24T16:19:16,018 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.3-py3-none-any.whl#sha256=7b62f2fcef8414d2a429f2f3c033e85c9377805612113e7103fa6793aa083cbc (from https://www.piwheels.org/simple/mitos/) 2024-01-24T16:19:16,018 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.2-py3-none-any.whl#sha256=ba6a5f7a1d3a0a95106d401e13f7639c5ed2ecb367ab7899e2204b14aa9930a1 (from https://www.piwheels.org/simple/mitos/) 2024-01-24T16:19:16,019 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.1-py3-none-any.whl#sha256=d216729f10eb3463d947658451c8f70fd97a9b2ca94cea55221f7a50f85749e2 (from https://www.piwheels.org/simple/mitos/) 2024-01-24T16:19:16,019 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0-py3-none-any.whl#sha256=4f914c63f700f85163b395353782bcb87e49392f63c151f387dd4514694d0ac1 (from https://www.piwheels.org/simple/mitos/) 2024-01-24T16:19:16,020 Skipping link: not a file: https://www.piwheels.org/simple/mitos/ 2024-01-24T16:19:16,021 Skipping link: not a file: https://pypi.org/simple/mitos/ 2024-01-24T16:19:16,042 Given no hashes to check 1 links for project 'mitos': discarding no candidates 2024-01-24T16:19:16,060 Collecting mitos==2.1.7 2024-01-24T16:19:16,062 Created temporary directory: /tmp/pip-unpack-f7ug_wqw 2024-01-24T16:19:16,293 Downloading mitos-2.1.7.tar.gz (273 kB) 2024-01-24T16:19:16,576 Added mitos==2.1.7 from https://files.pythonhosted.org/packages/ae/13/4befcffdab2028eaed3986939d74736846d66cde1d2c66a464d03a70c860/mitos-2.1.7.tar.gz to build tracker '/tmp/pip-build-tracker-rg15k13w' 2024-01-24T16:19:16,577 Running setup.py (path:/tmp/pip-wheel-t405cs67/mitos_1a4fbaa87a66462a8eb81fc03628625f/setup.py) egg_info for package mitos 2024-01-24T16:19:16,578 Created temporary directory: /tmp/pip-pip-egg-info-fu86_424 2024-01-24T16:19:16,579 Preparing metadata (setup.py): started 2024-01-24T16:19:16,581 Running command python setup.py egg_info 2024-01-24T16:19:17,639 running egg_info 2024-01-24T16:19:17,640 creating /tmp/pip-pip-egg-info-fu86_424/mitos.egg-info 2024-01-24T16:19:17,665 writing /tmp/pip-pip-egg-info-fu86_424/mitos.egg-info/PKG-INFO 2024-01-24T16:19:17,668 writing dependency_links to /tmp/pip-pip-egg-info-fu86_424/mitos.egg-info/dependency_links.txt 2024-01-24T16:19:17,670 writing requirements to /tmp/pip-pip-egg-info-fu86_424/mitos.egg-info/requires.txt 2024-01-24T16:19:17,671 writing top-level names to /tmp/pip-pip-egg-info-fu86_424/mitos.egg-info/top_level.txt 2024-01-24T16:19:17,672 writing manifest file '/tmp/pip-pip-egg-info-fu86_424/mitos.egg-info/SOURCES.txt' 2024-01-24T16:19:17,791 reading manifest file '/tmp/pip-pip-egg-info-fu86_424/mitos.egg-info/SOURCES.txt' 2024-01-24T16:19:17,793 reading manifest template 'MANIFEST.in' 2024-01-24T16:19:17,793 warning: no files found matching 'mitos/codons/gc.prt' 2024-01-24T16:19:17,795 adding license file 'LICENSE' 2024-01-24T16:19:17,799 writing manifest file '/tmp/pip-pip-egg-info-fu86_424/mitos.egg-info/SOURCES.txt' 2024-01-24T16:19:17,906 Preparing metadata (setup.py): finished with status 'done' 2024-01-24T16:19:17,910 Source in /tmp/pip-wheel-t405cs67/mitos_1a4fbaa87a66462a8eb81fc03628625f has version 2.1.7, which satisfies requirement mitos==2.1.7 from https://files.pythonhosted.org/packages/ae/13/4befcffdab2028eaed3986939d74736846d66cde1d2c66a464d03a70c860/mitos-2.1.7.tar.gz 2024-01-24T16:19:17,911 Removed mitos==2.1.7 from https://files.pythonhosted.org/packages/ae/13/4befcffdab2028eaed3986939d74736846d66cde1d2c66a464d03a70c860/mitos-2.1.7.tar.gz from build tracker '/tmp/pip-build-tracker-rg15k13w' 2024-01-24T16:19:17,915 Created temporary directory: /tmp/pip-unpack-wz38w93u 2024-01-24T16:19:17,916 Created temporary directory: /tmp/pip-unpack-4fcp3bst 2024-01-24T16:19:17,920 Building wheels for collected packages: mitos 2024-01-24T16:19:17,924 Created temporary directory: /tmp/pip-wheel-suypi4c3 2024-01-24T16:19:17,925 Building wheel for mitos (setup.py): started 2024-01-24T16:19:17,926 Destination directory: /tmp/pip-wheel-suypi4c3 2024-01-24T16:19:17,926 Running command python setup.py bdist_wheel 2024-01-24T16:19:18,934 running bdist_wheel 2024-01-24T16:19:19,028 running build 2024-01-24T16:19:19,028 running build_py 2024-01-24T16:19:19,056 creating build 2024-01-24T16:19:19,056 creating build/lib 2024-01-24T16:19:19,057 creating build/lib/mitos 2024-01-24T16:19:19,058 copying mitos/trnascan_parse_separate.py -> build/lib/mitos 2024-01-24T16:19:19,061 copying mitos/mitos-extension.py -> build/lib/mitos 2024-01-24T16:19:19,063 copying mitos/convert_tree.py -> build/lib/mitos 2024-01-24T16:19:19,066 copying mitos/trna-cm.py -> build/lib/mitos 2024-01-24T16:19:19,073 copying mitos/mitoloc.py -> build/lib/mitos 2024-01-24T16:19:19,075 copying mitos/prepareFiles.py -> build/lib/mitos 2024-01-24T16:19:19,077 copying mitos/removegene.py -> build/lib/mitos 2024-01-24T16:19:19,078 copying mitos/mumcmp.py -> build/lib/mitos 2024-01-24T16:19:19,080 copying mitos/cmsearch_parse_separate.py -> build/lib/mitos 2024-01-24T16:19:19,082 copying mitos/names.py -> build/lib/mitos 2024-01-24T16:19:19,084 copying mitos/mitoch_revisions.py -> build/lib/mitos 2024-01-24T16:19:19,086 copying mitos/codoncount.py -> build/lib/mitos 2024-01-24T16:19:19,088 copying mitos/create_prot_fasta.py -> build/lib/mitos 2024-01-24T16:19:19,090 copying mitos/update-mitolog.py -> build/lib/mitos 2024-01-24T16:19:19,092 copying mitos/trnadist.py -> build/lib/mitos 2024-01-24T16:19:19,095 copying mitos/booreparser.py -> build/lib/mitos 2024-01-24T16:19:19,097 copying mitos/ogre-geneorder.py -> build/lib/mitos 2024-01-24T16:19:19,098 copying mitos/skew.py -> build/lib/mitos 2024-01-24T16:19:19,100 copying mitos/CONFIG.py -> build/lib/mitos 2024-01-24T16:19:19,102 copying mitos/inihit.py -> build/lib/mitos 2024-01-24T16:19:19,104 copying mitos/get-wancy.py -> build/lib/mitos 2024-01-24T16:19:19,106 copying mitos/mitos-extension2.py -> build/lib/mitos 2024-01-24T16:19:19,108 copying mitos/__init__.py -> build/lib/mitos 2024-01-24T16:19:19,110 copying mitos/merge_results.py -> build/lib/mitos 2024-01-24T16:19:19,113 creating build/lib/mitos/trna 2024-01-24T16:19:19,113 copying mitos/trna/trnascan.py -> build/lib/mitos/trna 2024-01-24T16:19:19,116 copying mitos/trna/arwenscan.py -> build/lib/mitos/trna 2024-01-24T16:19:19,118 copying mitos/trna/__init__.py -> build/lib/mitos/trna 2024-01-24T16:19:19,121 creating build/lib/mitos/protfeat 2024-01-24T16:19:19,121 copying mitos/protfeat/__init__.py -> build/lib/mitos/protfeat 2024-01-24T16:19:19,124 creating build/lib/mitos/draw 2024-01-24T16:19:19,125 copying mitos/draw/__init__.py -> build/lib/mitos/draw 2024-01-24T16:19:19,128 creating build/lib/mitos/gb 2024-01-24T16:19:19,128 copying mitos/gb/unify.py -> build/lib/mitos/gb 2024-01-24T16:19:19,131 copying mitos/gb/__init__.py -> build/lib/mitos/gb 2024-01-24T16:19:19,134 creating build/lib/mitos/mitfi 2024-01-24T16:19:19,135 copying mitos/mitfi/__init__.py -> build/lib/mitos/mitfi 2024-01-24T16:19:19,137 creating build/lib/mitos/mergefeature 2024-01-24T16:19:19,138 copying mitos/mergefeature/__init__.py -> build/lib/mitos/mergefeature 2024-01-24T16:19:19,141 creating build/lib/mitos/webserver 2024-01-24T16:19:19,142 copying mitos/webserver/__init__.py -> build/lib/mitos/webserver 2024-01-24T16:19:19,145 creating build/lib/mitos/rna 2024-01-24T16:19:19,146 copying mitos/rna/forester.py -> build/lib/mitos/rna 2024-01-24T16:19:19,148 copying mitos/rna/vienna.py -> build/lib/mitos/rna 2024-01-24T16:19:19,149 copying mitos/rna/__init__.py -> build/lib/mitos/rna 2024-01-24T16:19:19,151 creating build/lib/mitos/util 2024-01-24T16:19:19,152 copying mitos/util/__init__.py -> build/lib/mitos/util 2024-01-24T16:19:19,154 creating build/lib/mitos/update 2024-01-24T16:19:19,155 copying mitos/update/__init__.py -> build/lib/mitos/update 2024-01-24T16:19:19,158 creating build/lib/mitos/mitofile 2024-01-24T16:19:19,158 copying mitos/mitofile/__init__.py -> build/lib/mitos/mitofile 2024-01-24T16:19:19,161 creating build/lib/mitos/blast 2024-01-24T16:19:19,162 copying mitos/blast/__init__.py -> build/lib/mitos/blast 2024-01-24T16:19:19,166 creating build/lib/mitos/bedfile 2024-01-24T16:19:19,167 copying mitos/bedfile/__init__.py -> build/lib/mitos/bedfile 2024-01-24T16:19:19,169 creating build/lib/mitos/sequin 2024-01-24T16:19:19,170 copying mitos/sequin/__init__.py -> build/lib/mitos/sequin 2024-01-24T16:19:19,172 creating build/lib/mitos/extprog 2024-01-24T16:19:19,173 copying mitos/extprog/__init__.py -> build/lib/mitos/extprog 2024-01-24T16:19:19,176 creating build/lib/mitos/feature 2024-01-24T16:19:19,177 copying mitos/feature/__init__.py -> build/lib/mitos/feature 2024-01-24T16:19:19,180 creating build/lib/mitos/sequence 2024-01-24T16:19:19,181 copying mitos/sequence/degenerate.py -> build/lib/mitos/sequence 2024-01-24T16:19:19,182 copying mitos/sequence/__init__.py -> build/lib/mitos/sequence 2024-01-24T16:19:19,186 creating build/lib/mitos/mito 2024-01-24T16:19:19,186 copying mitos/mito/__init__.py -> build/lib/mitos/mito 2024-01-24T16:19:19,189 creating build/lib/mitos/gfffile 2024-01-24T16:19:19,190 copying mitos/gfffile/__init__.py -> build/lib/mitos/gfffile 2024-01-24T16:19:19,192 creating build/lib/mitos/tax 2024-01-24T16:19:19,193 copying mitos/tax/__init__.py -> build/lib/mitos/tax 2024-01-24T16:19:19,195 creating build/lib/mitos/tbl 2024-01-24T16:19:19,196 copying mitos/tbl/__init__.py -> build/lib/mitos/tbl 2024-01-24T16:19:19,198 running egg_info 2024-01-24T16:19:19,253 writing mitos.egg-info/PKG-INFO 2024-01-24T16:19:19,256 writing dependency_links to mitos.egg-info/dependency_links.txt 2024-01-24T16:19:19,258 writing requirements to mitos.egg-info/requires.txt 2024-01-24T16:19:19,259 writing top-level names to mitos.egg-info/top_level.txt 2024-01-24T16:19:19,299 reading manifest file 'mitos.egg-info/SOURCES.txt' 2024-01-24T16:19:19,302 reading manifest template 'MANIFEST.in' 2024-01-24T16:19:19,303 warning: no files found matching 'mitos/codons/gc.prt' 2024-01-24T16:19:19,305 adding license file 'LICENSE' 2024-01-24T16:19:19,309 writing manifest file 'mitos.egg-info/SOURCES.txt' 2024-01-24T16:19:19,312 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'mitos.mitfi.parser' is absent from the `packages` configuration. 2024-01-24T16:19:19,313 !! 2024-01-24T16:19:19,314 ******************************************************************************** 2024-01-24T16:19:19,315 ############################ 2024-01-24T16:19:19,315 # Package would be ignored # 2024-01-24T16:19:19,316 ############################ 2024-01-24T16:19:19,316 Python recognizes 'mitos.mitfi.parser' as an importable package[^1], 2024-01-24T16:19:19,317 but it is absent from setuptools' `packages` configuration. 2024-01-24T16:19:19,318 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-24T16:19:19,318 package, please make sure that 'mitos.mitfi.parser' is explicitly added 2024-01-24T16:19:19,318 to the `packages` configuration field. 2024-01-24T16:19:19,320 Alternatively, you can also rely on setuptools' discovery methods 2024-01-24T16:19:19,320 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-24T16:19:19,320 instead of `find_packages(...)`/`find:`). 2024-01-24T16:19:19,321 You can read more about "package discovery" on setuptools documentation page: 2024-01-24T16:19:19,322 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-24T16:19:19,323 If you don't want 'mitos.mitfi.parser' to be distributed and are 2024-01-24T16:19:19,323 already explicitly excluding 'mitos.mitfi.parser' via 2024-01-24T16:19:19,324 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-24T16:19:19,324 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-24T16:19:19,325 combination with a more fine grained `package-data` configuration. 2024-01-24T16:19:19,326 You can read more about "package data files" on setuptools documentation page: 2024-01-24T16:19:19,327 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-24T16:19:19,328 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-24T16:19:19,329 even if it does not contain any `.py` files. 2024-01-24T16:19:19,329 On the other hand, currently there is no concept of package data 2024-01-24T16:19:19,330 directory, all directories are treated like packages. 2024-01-24T16:19:19,330 ******************************************************************************** 2024-01-24T16:19:19,331 !! 2024-01-24T16:19:19,332 check.warn(importable) 2024-01-24T16:19:19,332 copying mitos/plotprot.R -> build/lib/mitos 2024-01-24T16:19:19,332 copying mitos/plotrna.R -> build/lib/mitos 2024-01-24T16:19:19,333 copying mitos/plotstst.R -> build/lib/mitos 2024-01-24T16:19:19,335 creating build/lib/mitos/mitfi/parser 2024-01-24T16:19:19,336 copying mitos/mitfi/parser/improve_infernal_structure.jar -> build/lib/mitos/mitfi/parser 2024-01-24T16:19:19,338 copying mitos/mitfi/parser/mitfiGeneticCodes -> build/lib/mitos/mitfi/parser 2024-01-24T16:19:19,340 copying mitos/mitfi/parser/mitfi_import-1.1.jar -> build/lib/mitos/mitfi/parser 2024-01-24T16:19:19,343 copying mitos/mitfi/parser/mitfi_import-1.1.jar.old -> build/lib/mitos/mitfi/parser 2024-01-24T16:19:19,346 copying mitos/mitfi/parser/mitfi_import-1.1.jar.org -> build/lib/mitos/mitfi/parser 2024-01-24T16:19:19,349 copying mitos/mitfi/parser/mitfi_import-1.1.jar.org.pre-circ -> build/lib/mitos/mitfi/parser 2024-01-24T16:19:19,352 copying mitos/mitfi/parser/mitfi_import.jar -> build/lib/mitos/mitfi/parser 2024-01-24T16:19:19,355 copying mitos/webserver/help.txt -> build/lib/mitos/webserver 2024-01-24T16:19:19,358 copying mitos/webserver/history.txt -> build/lib/mitos/webserver 2024-01-24T16:19:19,360 copying mitos/webserver/index.txt -> build/lib/mitos/webserver 2024-01-24T16:19:19,362 copying mitos/webserver/news.txt -> build/lib/mitos/webserver 2024-01-24T16:19:19,364 copying mitos/webserver/upload.txt -> build/lib/mitos/webserver 2024-01-24T16:19:19,366 copying mitos/webserver/wait.txt -> build/lib/mitos/webserver 2024-01-24T16:19:19,375 running build_scripts 2024-01-24T16:19:19,376 creating build/scripts-3.11 2024-01-24T16:19:19,376 copying and adjusting runmitos.py -> build/scripts-3.11 2024-01-24T16:19:19,380 copying and adjusting drawmitos.py -> build/scripts-3.11 2024-01-24T16:19:19,381 copying and adjusting analyse.py -> build/scripts-3.11 2024-01-24T16:19:19,384 copying and adjusting gcpp.py -> build/scripts-3.11 2024-01-24T16:19:19,386 copying and adjusting geneorder.py -> build/scripts-3.11 2024-01-24T16:19:19,388 copying and adjusting getfeatures.py -> build/scripts-3.11 2024-01-24T16:19:19,390 copying and adjusting getinfo.py -> build/scripts-3.11 2024-01-24T16:19:19,391 copying and adjusting refseqsplit.py -> build/scripts-3.11 2024-01-24T16:19:19,393 copying and adjusting subseq.py -> build/scripts-3.11 2024-01-24T16:19:19,395 copying and adjusting taxtree.py -> build/scripts-3.11 2024-01-24T16:19:19,397 copying update-blastdb.py -> build/scripts-3.11 2024-01-24T16:19:19,399 copying mitos/plotprot.R -> build/scripts-3.11 2024-01-24T16:19:19,401 copying mitos/plotstst.R -> build/scripts-3.11 2024-01-24T16:19:19,403 copying mitos/plotrna.R -> build/scripts-3.11 2024-01-24T16:19:19,404 changing mode of build/scripts-3.11/runmitos.py from 644 to 755 2024-01-24T16:19:19,405 changing mode of build/scripts-3.11/drawmitos.py from 644 to 755 2024-01-24T16:19:19,405 changing mode of build/scripts-3.11/analyse.py from 644 to 755 2024-01-24T16:19:19,406 changing mode of build/scripts-3.11/gcpp.py from 644 to 755 2024-01-24T16:19:19,406 changing mode of build/scripts-3.11/geneorder.py from 644 to 755 2024-01-24T16:19:19,407 changing mode of build/scripts-3.11/getfeatures.py from 644 to 755 2024-01-24T16:19:19,407 changing mode of build/scripts-3.11/getinfo.py from 644 to 755 2024-01-24T16:19:19,408 changing mode of build/scripts-3.11/refseqsplit.py from 644 to 755 2024-01-24T16:19:19,408 changing mode of build/scripts-3.11/subseq.py from 644 to 755 2024-01-24T16:19:19,409 changing mode of build/scripts-3.11/taxtree.py from 644 to 755 2024-01-24T16:19:19,409 changing mode of build/scripts-3.11/update-blastdb.py from 644 to 755 2024-01-24T16:19:19,432 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-01-24T16:19:19,433 !! 2024-01-24T16:19:19,434 ******************************************************************************** 2024-01-24T16:19:19,434 Please avoid running ``setup.py`` directly. 2024-01-24T16:19:19,435 Instead, use pypa/build, pypa/installer or other 2024-01-24T16:19:19,436 standards-based tools. 2024-01-24T16:19:19,437 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-01-24T16:19:19,437 ******************************************************************************** 2024-01-24T16:19:19,439 !! 2024-01-24T16:19:19,439 self.initialize_options() 2024-01-24T16:19:19,457 installing to build/bdist.linux-armv7l/wheel 2024-01-24T16:19:19,458 running install 2024-01-24T16:19:19,482 running install_lib 2024-01-24T16:19:19,506 creating build/bdist.linux-armv7l 2024-01-24T16:19:19,506 creating build/bdist.linux-armv7l/wheel 2024-01-24T16:19:19,508 creating build/bdist.linux-armv7l/wheel/mitos 2024-01-24T16:19:19,509 copying build/lib/mitos/trnascan_parse_separate.py -> build/bdist.linux-armv7l/wheel/mitos 2024-01-24T16:19:19,512 creating build/bdist.linux-armv7l/wheel/mitos/trna 2024-01-24T16:19:19,513 copying build/lib/mitos/trna/trnascan.py -> build/bdist.linux-armv7l/wheel/mitos/trna 2024-01-24T16:19:19,516 copying build/lib/mitos/trna/arwenscan.py -> build/bdist.linux-armv7l/wheel/mitos/trna 2024-01-24T16:19:19,518 copying build/lib/mitos/trna/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/trna 2024-01-24T16:19:19,520 copying build/lib/mitos/mitos-extension.py -> build/bdist.linux-armv7l/wheel/mitos 2024-01-24T16:19:19,522 copying build/lib/mitos/convert_tree.py -> build/bdist.linux-armv7l/wheel/mitos 2024-01-24T16:19:19,525 creating build/bdist.linux-armv7l/wheel/mitos/protfeat 2024-01-24T16:19:19,526 copying build/lib/mitos/protfeat/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/protfeat 2024-01-24T16:19:19,529 creating build/bdist.linux-armv7l/wheel/mitos/draw 2024-01-24T16:19:19,530 copying build/lib/mitos/draw/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/draw 2024-01-24T16:19:19,533 creating build/bdist.linux-armv7l/wheel/mitos/gb 2024-01-24T16:19:19,534 copying build/lib/mitos/gb/unify.py -> build/bdist.linux-armv7l/wheel/mitos/gb 2024-01-24T16:19:19,536 copying build/lib/mitos/gb/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/gb 2024-01-24T16:19:19,540 creating build/bdist.linux-armv7l/wheel/mitos/mitfi 2024-01-24T16:19:19,541 creating build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2024-01-24T16:19:19,543 copying build/lib/mitos/mitfi/parser/mitfiGeneticCodes -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2024-01-24T16:19:19,545 copying build/lib/mitos/mitfi/parser/mitfi_import-1.1.jar -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2024-01-24T16:19:19,548 copying build/lib/mitos/mitfi/parser/mitfi_import-1.1.jar.old -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2024-01-24T16:19:19,550 copying build/lib/mitos/mitfi/parser/mitfi_import-1.1.jar.org.pre-circ -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2024-01-24T16:19:19,553 copying build/lib/mitos/mitfi/parser/mitfi_import.jar -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2024-01-24T16:19:19,556 copying build/lib/mitos/mitfi/parser/improve_infernal_structure.jar -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2024-01-24T16:19:19,559 copying build/lib/mitos/mitfi/parser/mitfi_import-1.1.jar.org -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2024-01-24T16:19:19,562 copying build/lib/mitos/mitfi/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mitfi 2024-01-24T16:19:19,564 copying build/lib/mitos/trna-cm.py -> build/bdist.linux-armv7l/wheel/mitos 2024-01-24T16:19:19,570 copying build/lib/mitos/mitoloc.py -> build/bdist.linux-armv7l/wheel/mitos 2024-01-24T16:19:19,573 creating build/bdist.linux-armv7l/wheel/mitos/mergefeature 2024-01-24T16:19:19,574 copying build/lib/mitos/mergefeature/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mergefeature 2024-01-24T16:19:19,578 creating build/bdist.linux-armv7l/wheel/mitos/webserver 2024-01-24T16:19:19,579 copying build/lib/mitos/webserver/index.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2024-01-24T16:19:19,581 copying build/lib/mitos/webserver/history.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2024-01-24T16:19:19,583 copying build/lib/mitos/webserver/help.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2024-01-24T16:19:19,586 copying build/lib/mitos/webserver/upload.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2024-01-24T16:19:19,589 copying build/lib/mitos/webserver/wait.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2024-01-24T16:19:19,591 copying build/lib/mitos/webserver/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/webserver 2024-01-24T16:19:19,593 copying build/lib/mitos/webserver/news.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2024-01-24T16:19:19,595 copying build/lib/mitos/plotrna.R -> build/bdist.linux-armv7l/wheel/mitos 2024-01-24T16:19:19,598 creating build/bdist.linux-armv7l/wheel/mitos/rna 2024-01-24T16:19:19,599 copying build/lib/mitos/rna/forester.py -> build/bdist.linux-armv7l/wheel/mitos/rna 2024-01-24T16:19:19,602 copying build/lib/mitos/rna/vienna.py -> build/bdist.linux-armv7l/wheel/mitos/rna 2024-01-24T16:19:19,604 copying build/lib/mitos/rna/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/rna 2024-01-24T16:19:19,606 creating build/bdist.linux-armv7l/wheel/mitos/util 2024-01-24T16:19:19,607 copying build/lib/mitos/util/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/util 2024-01-24T16:19:19,609 copying build/lib/mitos/prepareFiles.py -> build/bdist.linux-armv7l/wheel/mitos 2024-01-24T16:19:19,611 creating build/bdist.linux-armv7l/wheel/mitos/update 2024-01-24T16:19:19,613 copying build/lib/mitos/update/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/update 2024-01-24T16:19:19,616 copying build/lib/mitos/removegene.py -> build/bdist.linux-armv7l/wheel/mitos 2024-01-24T16:19:19,618 creating build/bdist.linux-armv7l/wheel/mitos/mitofile 2024-01-24T16:19:19,619 copying build/lib/mitos/mitofile/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mitofile 2024-01-24T16:19:19,622 copying build/lib/mitos/mumcmp.py -> build/bdist.linux-armv7l/wheel/mitos 2024-01-24T16:19:19,624 copying build/lib/mitos/cmsearch_parse_separate.py -> build/bdist.linux-armv7l/wheel/mitos 2024-01-24T16:19:19,626 creating build/bdist.linux-armv7l/wheel/mitos/blast 2024-01-24T16:19:19,627 copying build/lib/mitos/blast/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/blast 2024-01-24T16:19:19,632 copying build/lib/mitos/names.py -> build/bdist.linux-armv7l/wheel/mitos 2024-01-24T16:19:19,634 creating build/bdist.linux-armv7l/wheel/mitos/bedfile 2024-01-24T16:19:19,635 copying build/lib/mitos/bedfile/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/bedfile 2024-01-24T16:19:19,638 copying build/lib/mitos/mitoch_revisions.py -> build/bdist.linux-armv7l/wheel/mitos 2024-01-24T16:19:19,641 copying build/lib/mitos/codoncount.py -> build/bdist.linux-armv7l/wheel/mitos 2024-01-24T16:19:19,643 copying build/lib/mitos/create_prot_fasta.py -> build/bdist.linux-armv7l/wheel/mitos 2024-01-24T16:19:19,646 creating build/bdist.linux-armv7l/wheel/mitos/sequin 2024-01-24T16:19:19,647 copying build/lib/mitos/sequin/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/sequin 2024-01-24T16:19:19,649 copying build/lib/mitos/update-mitolog.py -> build/bdist.linux-armv7l/wheel/mitos 2024-01-24T16:19:19,652 copying build/lib/mitos/trnadist.py -> build/bdist.linux-armv7l/wheel/mitos 2024-01-24T16:19:19,655 copying build/lib/mitos/booreparser.py -> build/bdist.linux-armv7l/wheel/mitos 2024-01-24T16:19:19,657 copying build/lib/mitos/ogre-geneorder.py -> build/bdist.linux-armv7l/wheel/mitos 2024-01-24T16:19:19,659 copying build/lib/mitos/plotprot.R -> build/bdist.linux-armv7l/wheel/mitos 2024-01-24T16:19:19,662 creating build/bdist.linux-armv7l/wheel/mitos/extprog 2024-01-24T16:19:19,663 copying build/lib/mitos/extprog/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/extprog 2024-01-24T16:19:19,665 copying build/lib/mitos/skew.py -> build/bdist.linux-armv7l/wheel/mitos 2024-01-24T16:19:19,668 creating build/bdist.linux-armv7l/wheel/mitos/feature 2024-01-24T16:19:19,670 copying build/lib/mitos/feature/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/feature 2024-01-24T16:19:19,673 copying build/lib/mitos/CONFIG.py -> build/bdist.linux-armv7l/wheel/mitos 2024-01-24T16:19:19,675 copying build/lib/mitos/inihit.py -> build/bdist.linux-armv7l/wheel/mitos 2024-01-24T16:19:19,678 creating build/bdist.linux-armv7l/wheel/mitos/sequence 2024-01-24T16:19:19,680 copying build/lib/mitos/sequence/degenerate.py -> build/bdist.linux-armv7l/wheel/mitos/sequence 2024-01-24T16:19:19,682 copying build/lib/mitos/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/sequence 2024-01-24T16:19:19,685 creating build/bdist.linux-armv7l/wheel/mitos/mito 2024-01-24T16:19:19,686 copying build/lib/mitos/mito/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mito 2024-01-24T16:19:19,689 copying build/lib/mitos/get-wancy.py -> build/bdist.linux-armv7l/wheel/mitos 2024-01-24T16:19:19,691 copying build/lib/mitos/mitos-extension2.py -> build/bdist.linux-armv7l/wheel/mitos 2024-01-24T16:19:19,695 creating build/bdist.linux-armv7l/wheel/mitos/gfffile 2024-01-24T16:19:19,696 copying build/lib/mitos/gfffile/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/gfffile 2024-01-24T16:19:19,698 creating build/bdist.linux-armv7l/wheel/mitos/tax 2024-01-24T16:19:19,699 copying build/lib/mitos/tax/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/tax 2024-01-24T16:19:19,702 copying build/lib/mitos/__init__.py -> build/bdist.linux-armv7l/wheel/mitos 2024-01-24T16:19:19,704 copying build/lib/mitos/plotstst.R -> build/bdist.linux-armv7l/wheel/mitos 2024-01-24T16:19:19,707 copying build/lib/mitos/merge_results.py -> build/bdist.linux-armv7l/wheel/mitos 2024-01-24T16:19:19,709 creating build/bdist.linux-armv7l/wheel/mitos/tbl 2024-01-24T16:19:19,711 copying build/lib/mitos/tbl/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/tbl 2024-01-24T16:19:19,713 running install_egg_info 2024-01-24T16:19:19,745 Copying mitos.egg-info to build/bdist.linux-armv7l/wheel/mitos-2.1.7-py3.11.egg-info 2024-01-24T16:19:19,756 running install_scripts 2024-01-24T16:19:19,758 creating build/bdist.linux-armv7l/wheel/mitos-2.1.7.data 2024-01-24T16:19:19,759 creating build/bdist.linux-armv7l/wheel/mitos-2.1.7.data/scripts 2024-01-24T16:19:19,761 copying build/scripts-3.11/gcpp.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.7.data/scripts 2024-01-24T16:19:19,765 copying build/scripts-3.11/getfeatures.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.7.data/scripts 2024-01-24T16:19:19,767 copying build/scripts-3.11/geneorder.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.7.data/scripts 2024-01-24T16:19:19,771 copying build/scripts-3.11/plotrna.R -> build/bdist.linux-armv7l/wheel/mitos-2.1.7.data/scripts 2024-01-24T16:19:19,773 copying build/scripts-3.11/analyse.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.7.data/scripts 2024-01-24T16:19:19,777 copying build/scripts-3.11/taxtree.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.7.data/scripts 2024-01-24T16:19:19,779 copying build/scripts-3.11/getinfo.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.7.data/scripts 2024-01-24T16:19:19,782 copying build/scripts-3.11/subseq.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.7.data/scripts 2024-01-24T16:19:19,785 copying build/scripts-3.11/update-blastdb.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.7.data/scripts 2024-01-24T16:19:19,788 copying build/scripts-3.11/plotprot.R -> build/bdist.linux-armv7l/wheel/mitos-2.1.7.data/scripts 2024-01-24T16:19:19,791 copying build/scripts-3.11/refseqsplit.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.7.data/scripts 2024-01-24T16:19:19,793 copying build/scripts-3.11/runmitos.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.7.data/scripts 2024-01-24T16:19:19,797 copying build/scripts-3.11/plotstst.R -> build/bdist.linux-armv7l/wheel/mitos-2.1.7.data/scripts 2024-01-24T16:19:19,800 copying build/scripts-3.11/drawmitos.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.7.data/scripts 2024-01-24T16:19:19,803 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.7.data/scripts/gcpp.py to 755 2024-01-24T16:19:19,804 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.7.data/scripts/getfeatures.py to 755 2024-01-24T16:19:19,805 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.7.data/scripts/geneorder.py to 755 2024-01-24T16:19:19,805 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.7.data/scripts/plotrna.R to 755 2024-01-24T16:19:19,806 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.7.data/scripts/analyse.py to 755 2024-01-24T16:19:19,807 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.7.data/scripts/taxtree.py to 755 2024-01-24T16:19:19,808 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.7.data/scripts/getinfo.py to 755 2024-01-24T16:19:19,809 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.7.data/scripts/subseq.py to 755 2024-01-24T16:19:19,810 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.7.data/scripts/update-blastdb.py to 755 2024-01-24T16:19:19,811 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.7.data/scripts/plotprot.R to 755 2024-01-24T16:19:19,812 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.7.data/scripts/refseqsplit.py to 755 2024-01-24T16:19:19,813 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.7.data/scripts/runmitos.py to 755 2024-01-24T16:19:19,814 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.7.data/scripts/plotstst.R to 755 2024-01-24T16:19:19,815 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.7.data/scripts/drawmitos.py to 755 2024-01-24T16:19:19,829 creating build/bdist.linux-armv7l/wheel/mitos-2.1.7.dist-info/WHEEL 2024-01-24T16:19:19,832 creating '/tmp/pip-wheel-suypi4c3/mitos-2.1.7-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-01-24T16:19:19,836 adding 'mitos/CONFIG.py' 2024-01-24T16:19:19,837 adding 'mitos/__init__.py' 2024-01-24T16:19:19,839 adding 'mitos/booreparser.py' 2024-01-24T16:19:19,841 adding 'mitos/cmsearch_parse_separate.py' 2024-01-24T16:19:19,843 adding 'mitos/codoncount.py' 2024-01-24T16:19:19,846 adding 'mitos/convert_tree.py' 2024-01-24T16:19:19,848 adding 'mitos/create_prot_fasta.py' 2024-01-24T16:19:19,850 adding 'mitos/get-wancy.py' 2024-01-24T16:19:19,852 adding 'mitos/inihit.py' 2024-01-24T16:19:19,853 adding 'mitos/merge_results.py' 2024-01-24T16:19:19,858 adding 'mitos/mitoch_revisions.py' 2024-01-24T16:19:19,860 adding 'mitos/mitoloc.py' 2024-01-24T16:19:19,862 adding 'mitos/mitos-extension.py' 2024-01-24T16:19:19,865 adding 'mitos/mitos-extension2.py' 2024-01-24T16:19:19,866 adding 'mitos/mumcmp.py' 2024-01-24T16:19:19,867 adding 'mitos/names.py' 2024-01-24T16:19:19,868 adding 'mitos/ogre-geneorder.py' 2024-01-24T16:19:19,870 adding 'mitos/plotprot.R' 2024-01-24T16:19:19,871 adding 'mitos/plotrna.R' 2024-01-24T16:19:19,872 adding 'mitos/plotstst.R' 2024-01-24T16:19:19,873 adding 'mitos/prepareFiles.py' 2024-01-24T16:19:19,875 adding 'mitos/removegene.py' 2024-01-24T16:19:19,877 adding 'mitos/skew.py' 2024-01-24T16:19:19,892 adding 'mitos/trna-cm.py' 2024-01-24T16:19:19,896 adding 'mitos/trnadist.py' 2024-01-24T16:19:19,897 adding 'mitos/trnascan_parse_separate.py' 2024-01-24T16:19:19,899 adding 'mitos/update-mitolog.py' 2024-01-24T16:19:19,901 adding 'mitos/bedfile/__init__.py' 2024-01-24T16:19:19,912 adding 'mitos/blast/__init__.py' 2024-01-24T16:19:19,914 adding 'mitos/draw/__init__.py' 2024-01-24T16:19:19,916 adding 'mitos/extprog/__init__.py' 2024-01-24T16:19:19,922 adding 'mitos/feature/__init__.py' 2024-01-24T16:19:19,928 adding 'mitos/gb/__init__.py' 2024-01-24T16:19:19,930 adding 'mitos/gb/unify.py' 2024-01-24T16:19:19,932 adding 'mitos/gfffile/__init__.py' 2024-01-24T16:19:19,935 adding 'mitos/mergefeature/__init__.py' 2024-01-24T16:19:19,938 adding 'mitos/mitfi/__init__.py' 2024-01-24T16:19:19,941 adding 'mitos/mitfi/parser/improve_infernal_structure.jar' 2024-01-24T16:19:19,942 adding 'mitos/mitfi/parser/mitfiGeneticCodes' 2024-01-24T16:19:19,946 adding 'mitos/mitfi/parser/mitfi_import-1.1.jar' 2024-01-24T16:19:19,950 adding 'mitos/mitfi/parser/mitfi_import-1.1.jar.old' 2024-01-24T16:19:19,954 adding 'mitos/mitfi/parser/mitfi_import-1.1.jar.org' 2024-01-24T16:19:19,958 adding 'mitos/mitfi/parser/mitfi_import-1.1.jar.org.pre-circ' 2024-01-24T16:19:19,962 adding 'mitos/mitfi/parser/mitfi_import.jar' 2024-01-24T16:19:19,964 adding 'mitos/mito/__init__.py' 2024-01-24T16:19:19,966 adding 'mitos/mitofile/__init__.py' 2024-01-24T16:19:19,970 adding 'mitos/protfeat/__init__.py' 2024-01-24T16:19:19,972 adding 'mitos/rna/__init__.py' 2024-01-24T16:19:19,973 adding 'mitos/rna/forester.py' 2024-01-24T16:19:19,974 adding 'mitos/rna/vienna.py' 2024-01-24T16:19:19,977 adding 'mitos/sequence/__init__.py' 2024-01-24T16:19:19,978 adding 'mitos/sequence/degenerate.py' 2024-01-24T16:19:19,980 adding 'mitos/sequin/__init__.py' 2024-01-24T16:19:19,982 adding 'mitos/tax/__init__.py' 2024-01-24T16:19:19,984 adding 'mitos/tbl/__init__.py' 2024-01-24T16:19:19,986 adding 'mitos/trna/__init__.py' 2024-01-24T16:19:19,988 adding 'mitos/trna/arwenscan.py' 2024-01-24T16:19:19,990 adding 'mitos/trna/trnascan.py' 2024-01-24T16:19:19,993 adding 'mitos/update/__init__.py' 2024-01-24T16:19:19,995 adding 'mitos/util/__init__.py' 2024-01-24T16:19:19,997 adding 'mitos/webserver/__init__.py' 2024-01-24T16:19:20,001 adding 'mitos/webserver/help.txt' 2024-01-24T16:19:20,003 adding 'mitos/webserver/history.txt' 2024-01-24T16:19:20,004 adding 'mitos/webserver/index.txt' 2024-01-24T16:19:20,005 adding 'mitos/webserver/news.txt' 2024-01-24T16:19:20,006 adding 'mitos/webserver/upload.txt' 2024-01-24T16:19:20,007 adding 'mitos/webserver/wait.txt' 2024-01-24T16:19:20,010 adding 'mitos-2.1.7.data/scripts/analyse.py' 2024-01-24T16:19:20,012 adding 'mitos-2.1.7.data/scripts/drawmitos.py' 2024-01-24T16:19:20,013 adding 'mitos-2.1.7.data/scripts/gcpp.py' 2024-01-24T16:19:20,015 adding 'mitos-2.1.7.data/scripts/geneorder.py' 2024-01-24T16:19:20,017 adding 'mitos-2.1.7.data/scripts/getfeatures.py' 2024-01-24T16:19:20,018 adding 'mitos-2.1.7.data/scripts/getinfo.py' 2024-01-24T16:19:20,019 adding 'mitos-2.1.7.data/scripts/plotprot.R' 2024-01-24T16:19:20,021 adding 'mitos-2.1.7.data/scripts/plotrna.R' 2024-01-24T16:19:20,022 adding 'mitos-2.1.7.data/scripts/plotstst.R' 2024-01-24T16:19:20,023 adding 'mitos-2.1.7.data/scripts/refseqsplit.py' 2024-01-24T16:19:20,028 adding 'mitos-2.1.7.data/scripts/runmitos.py' 2024-01-24T16:19:20,030 adding 'mitos-2.1.7.data/scripts/subseq.py' 2024-01-24T16:19:20,032 adding 'mitos-2.1.7.data/scripts/taxtree.py' 2024-01-24T16:19:20,033 adding 'mitos-2.1.7.data/scripts/update-blastdb.py' 2024-01-24T16:19:20,035 adding 'mitos-2.1.7.dist-info/LICENSE' 2024-01-24T16:19:20,036 adding 'mitos-2.1.7.dist-info/METADATA' 2024-01-24T16:19:20,037 adding 'mitos-2.1.7.dist-info/WHEEL' 2024-01-24T16:19:20,038 adding 'mitos-2.1.7.dist-info/top_level.txt' 2024-01-24T16:19:20,039 adding 'mitos-2.1.7.dist-info/RECORD' 2024-01-24T16:19:20,045 removing build/bdist.linux-armv7l/wheel 2024-01-24T16:19:20,182 Building wheel for mitos (setup.py): finished with status 'done' 2024-01-24T16:19:20,188 Created wheel for mitos: filename=mitos-2.1.7-py3-none-any.whl size=332699 sha256=d4ac25651e00beb38a546bef9ff493efdfedc7dc904f673b5b079bb056214850 2024-01-24T16:19:20,189 Stored in directory: /tmp/pip-ephem-wheel-cache-qgqhuczy/wheels/4b/bc/45/b974fa319902a94f00d7aa272763888ce0016aa30b206a3dc1 2024-01-24T16:19:20,201 Successfully built mitos 2024-01-24T16:19:20,217 Removed build tracker: '/tmp/pip-build-tracker-rg15k13w'