2024-01-24T19:24:24,818 Created temporary directory: /tmp/pip-build-tracker-c828e6u3
2024-01-24T19:24:24,819 Initialized build tracking at /tmp/pip-build-tracker-c828e6u3
2024-01-24T19:24:24,819 Created build tracker: /tmp/pip-build-tracker-c828e6u3
2024-01-24T19:24:24,820 Entered build tracker: /tmp/pip-build-tracker-c828e6u3
2024-01-24T19:24:24,820 Created temporary directory: /tmp/pip-wheel-6fke2md7
2024-01-24T19:24:24,823 Created temporary directory: /tmp/pip-ephem-wheel-cache-71ces_tq
2024-01-24T19:24:24,845 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-01-24T19:24:24,849 2 location(s) to search for versions of mitos:
2024-01-24T19:24:24,849 * https://pypi.org/simple/mitos/
2024-01-24T19:24:24,849 * https://www.piwheels.org/simple/mitos/
2024-01-24T19:24:24,849 Fetching project page and analyzing links: https://pypi.org/simple/mitos/
2024-01-24T19:24:24,850 Getting page https://pypi.org/simple/mitos/
2024-01-24T19:24:24,852 Found index url https://pypi.org/simple/
2024-01-24T19:24:25,069 Fetched page https://pypi.org/simple/mitos/ as application/vnd.pypi.simple.v1+json
2024-01-24T19:24:25,076   Skipping link: No binaries permitted for mitos: https://files.pythonhosted.org/packages/ae/2d/5f1e66a046e59cf6088f44d4a02cae66d498e226365af5fd42e2d660a814/mitos-1.0-py2-none-any.whl (from https://pypi.org/simple/mitos/)
2024-01-24T19:24:25,076   Found link https://files.pythonhosted.org/packages/c5/6e/e1aae4079b0ebbce64897f54f5cd4a3953a0cb741026d16e14e7ae272a48/mitos-1.0.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0
2024-01-24T19:24:25,077   Found link https://files.pythonhosted.org/packages/d7/19/816780e09ecc6a783f146d80bcde73eb7940d074f4feea137ec954bfd437/mitos-1.0.1.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.1
2024-01-24T19:24:25,078   Found link https://files.pythonhosted.org/packages/38/c7/3dd90bcf0d61c69226ef1632baa3ad0e96d798de36053b4b56ed7660dfdb/mitos-1.0.2.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.2
2024-01-24T19:24:25,078   Found link https://files.pythonhosted.org/packages/e2/d4/864af2605cc1f45cc78cfed740bbdfba1da59ea9a42c24ef5077c9218501/mitos-1.0.3.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.3
2024-01-24T19:24:25,079   Found link https://files.pythonhosted.org/packages/8d/32/1aa5eb88f964c3cf5441622648cc4ae30f115db32bdd5dc5bf194a3c112c/mitos-1.0.4.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.4
2024-01-24T19:24:25,080   Found link https://files.pythonhosted.org/packages/ff/49/f4c711126604aa86abeeda44378786a0903bc53970acf4afa5feb68f72b8/mitos-1.0.5.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.5
2024-01-24T19:24:25,080   Skipping link: No binaries permitted for mitos: https://files.pythonhosted.org/packages/c3/cd/96e0e1ad1551b8fff56ab89e61231809494dec3ee80f51117b4f5d432452/mitos-1.1.0-py3-none-any.whl (from https://pypi.org/simple/mitos/)
2024-01-24T19:24:25,081   Found link https://files.pythonhosted.org/packages/ce/33/46fd40fd9f4c11f5bf296c2c092f59e36dee233d71a0f032b34c2a64c7ba/mitos-1.1.0.tar.gz (from https://pypi.org/simple/mitos/), version: 1.1.0
2024-01-24T19:24:25,082   Found link https://files.pythonhosted.org/packages/b3/a0/5268d8fec841240195c19e704b552a8b3060768c6710c67c67350ea60f13/mitos-1.1.1.tar.gz (from https://pypi.org/simple/mitos/), version: 1.1.1
2024-01-24T19:24:25,083   Found link https://files.pythonhosted.org/packages/7c/38/4431d42c178a65b3710531867f10ae50c5a49408ccab6c058af277e83e5d/mitos-1.1.2.tar.gz (from https://pypi.org/simple/mitos/), version: 1.1.2
2024-01-24T19:24:25,083   Found link https://files.pythonhosted.org/packages/76/40/e0db56e8dfc65a2a13c8f613c4b5839247b918a1cd5d83b384a6c957928e/mitos-1.1.3.tar.gz (from https://pypi.org/simple/mitos/), version: 1.1.3
2024-01-24T19:24:25,084   Found link https://files.pythonhosted.org/packages/fc/39/368668a4250e85f2a596f996a4067528a2e13ad69d18404d4dac5ca4118f/mitos-1.1.4.tar.gz (from https://pypi.org/simple/mitos/), version: 1.1.4
2024-01-24T19:24:25,085   Found link https://files.pythonhosted.org/packages/aa/6d/1bb441bdbf6da2df6d00bafbcc3bcdca90a5ca20c4c66af513b54741a841/mitos-1.1.5.tar.gz (from https://pypi.org/simple/mitos/), version: 1.1.5
2024-01-24T19:24:25,086   Found link https://files.pythonhosted.org/packages/f3/fa/7e2b9cef0d99e7792077a4c1116dc9bbe4c085e7b89ea79b74474c00b2b1/mitos-2.0.1.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.1
2024-01-24T19:24:25,087   Found link https://files.pythonhosted.org/packages/d7/53/5d215fe8689055dd329a27202f9dc7f66e23548f3d2ad3fa55d98dc56988/mitos-2.0.2.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.2
2024-01-24T19:24:25,087   Found link https://files.pythonhosted.org/packages/cd/97/a8bf95d5e26b51071d9f342dc475891425b223b6add347a6dbf9412937f1/mitos-2.0.3.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.3
2024-01-24T19:24:25,088   Found link https://files.pythonhosted.org/packages/39/9f/6cdac19a8d50915e2e5285b447077459af9c6524f980ded6657dc205593d/mitos-2.0.4.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.4
2024-01-24T19:24:25,088   Found link https://files.pythonhosted.org/packages/d0/16/8040a37887377e3992b0874ab441af54e16030fd23eb844bbf5293597c99/mitos-2.0.5.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.5
2024-01-24T19:24:25,089   Found link https://files.pythonhosted.org/packages/40/ef/5a93579c1ebc63ca8fe71cfe541bca389a0f9410b9a2c1ceff148f83af79/mitos-2.0.6.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.6
2024-01-24T19:24:25,089   Found link https://files.pythonhosted.org/packages/1f/a2/32eb96227aae3a719794cc922d839b8c38ee5c315087bf095792c48f996d/mitos-2.0.7.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.7
2024-01-24T19:24:25,090   Found link https://files.pythonhosted.org/packages/d5/7f/b3e5c5c83352beb13677186899379de3c50a2222dc8faac16632f600d4b6/mitos-2.0.8.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.8
2024-01-24T19:24:25,090   Skipping link: No binaries permitted for mitos: https://files.pythonhosted.org/packages/9d/93/5f2a1097bfa507acbf7dd6ac677f6df14df61692cccb42d28c34edb7ca5b/mitos-2.1.0-py3-none-any.whl (from https://pypi.org/simple/mitos/)
2024-01-24T19:24:25,091   Found link https://files.pythonhosted.org/packages/f8/f4/2950dea175f0bda896b88ac2ac13007a1d007252a583ddd328b176fb54a5/mitos-2.1.0.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.0
2024-01-24T19:24:25,092   Found link https://files.pythonhosted.org/packages/57/78/2fde036a6c767aa5fb8c1102526af749ee13ad426b295289265c548384f9/mitos-2.1.1.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.1
2024-01-24T19:24:25,092   Found link https://files.pythonhosted.org/packages/74/63/f90f359df86c01e68f5c678eef30d929b9311e7bb80f16071a1532515a0a/mitos-2.1.2.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.2
2024-01-24T19:24:25,093   Found link https://files.pythonhosted.org/packages/d6/1f/b6dbc4704555e91e3efa3184fc90b04e901dc6e787c37091d445dd50bd4b/mitos-2.1.3.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.3
2024-01-24T19:24:25,094   Found link https://files.pythonhosted.org/packages/ff/1f/af7beaaaa133f2f55cdbfbf5430c0e9a3102b101dd0a8d2c6f22376af56b/mitos-2.1.4.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.4
2024-01-24T19:24:25,095   Found link https://files.pythonhosted.org/packages/c9/6d/853d05a3ec8c81c73bb23ba0862ded05aa4c2fdc74cdc796c982c6896476/mitos-2.1.5.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.5
2024-01-24T19:24:25,095   Found link https://files.pythonhosted.org/packages/96/9a/97d5e59e6680b450e24d0c3313f112b8818f7d2f6c6fbc90d685cf7fe47c/mitos-2.1.6.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.6
2024-01-24T19:24:25,096   Found link https://files.pythonhosted.org/packages/ae/13/4befcffdab2028eaed3986939d74736846d66cde1d2c66a464d03a70c860/mitos-2.1.7.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.7
2024-01-24T19:24:25,097 Fetching project page and analyzing links: https://www.piwheels.org/simple/mitos/
2024-01-24T19:24:25,097 Getting page https://www.piwheels.org/simple/mitos/
2024-01-24T19:24:25,099 Found index url https://www.piwheels.org/simple/
2024-01-24T19:24:25,258 Fetched page https://www.piwheels.org/simple/mitos/ as text/html
2024-01-24T19:24:25,266   Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.7-py3-none-any.whl#sha256=d4ac25651e00beb38a546bef9ff493efdfedc7dc904f673b5b079bb056214850 (from https://www.piwheels.org/simple/mitos/)
2024-01-24T19:24:25,267   Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.6-py3-none-any.whl#sha256=bed8aeda4eebf1ce891081ec67cf34897f2e5da8800cfb51c78593616a3304ea (from https://www.piwheels.org/simple/mitos/)
2024-01-24T19:24:25,267   Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.5-py3-none-any.whl#sha256=c404e62da7a2d919a7cf0999ba3ce479541d935e38999ed75c09dc9a38f6b6bd (from https://www.piwheels.org/simple/mitos/)
2024-01-24T19:24:25,268   Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.4-py3-none-any.whl#sha256=249c87e42350fbefa1e3281d0e81f795c7710a95303b226bdc818b51615162e0 (from https://www.piwheels.org/simple/mitos/)
2024-01-24T19:24:25,268   Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.3-py3-none-any.whl#sha256=dd19f4a9b02b695465d7d7861d7f611d1c73f231e6205b881d1617cd733bdd87 (from https://www.piwheels.org/simple/mitos/)
2024-01-24T19:24:25,268   Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.2-py3-none-any.whl#sha256=c98234624cb7939861858030fbac10b88073159ea24b334b42e1cfd70254088d (from https://www.piwheels.org/simple/mitos/)
2024-01-24T19:24:25,269   Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.1-py3-none-any.whl#sha256=698670abccda0918af0b490888cb195f86172e217766c9672bfedae33666ac82 (from https://www.piwheels.org/simple/mitos/)
2024-01-24T19:24:25,269   Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.0-py3-none-any.whl#sha256=d4b006045b98620155cbed38de6ecf0d0ffb030cebc4d6e6e947cb015b8ce746 (from https://www.piwheels.org/simple/mitos/)
2024-01-24T19:24:25,270   Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.8-py3-none-any.whl#sha256=5e88aa49c5bba746d511e0e619295e3c59916c71ba94246f984e44dcfef6a06c (from https://www.piwheels.org/simple/mitos/)
2024-01-24T19:24:25,270   Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.7-py3-none-any.whl#sha256=97e98856e946735f44b3df83d67645e0dac8b411edb7774df74c00a44832e1d6 (from https://www.piwheels.org/simple/mitos/)
2024-01-24T19:24:25,271   Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.6-py3-none-any.whl#sha256=8fba2e7cf9c22c6a728a1f8141764a77a6a4a27d7f7e50106b6e43832857b149 (from https://www.piwheels.org/simple/mitos/)
2024-01-24T19:24:25,272   Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.5-py3-none-any.whl#sha256=ed4998969ebae7bf1688b78cdac8f19ca359f123ea79c2acd2654dd454a53f22 (from https://www.piwheels.org/simple/mitos/)
2024-01-24T19:24:25,272   Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.4-py3-none-any.whl#sha256=71ac10ffdc0a236d68e4fd82a700ae35a92f0b23a09242c8b99485ccbadb10cc (from https://www.piwheels.org/simple/mitos/)
2024-01-24T19:24:25,272   Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.3-py3-none-any.whl#sha256=4da7d3530901e0732adc63ab4afa0c5d9a40558469b2ccee71ea4fbad466603b (from https://www.piwheels.org/simple/mitos/)
2024-01-24T19:24:25,273   Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.2-py3-none-any.whl#sha256=0cd775b72e2dca4acf2f9c6f4d591abaeb00b983e4882fcf536d934a8263d342 (from https://www.piwheels.org/simple/mitos/)
2024-01-24T19:24:25,274   Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.1-py3-none-any.whl#sha256=307713427f698c0f3449d782d86287f1494fd2ff773a9fc407fbd29a0de53aed (from https://www.piwheels.org/simple/mitos/)
2024-01-24T19:24:25,274   Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.1.4-py3-none-any.whl#sha256=94e72cf1eb3cbbe067f3996d78d50a7fe9e91350bbd146f7babf90321ecb9ffc (from https://www.piwheels.org/simple/mitos/)
2024-01-24T19:24:25,275   Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.1.3-py3-none-any.whl#sha256=92bec0ea93c83f4d494767e69401c1dcc1dd8f562917c3d110ec0a525d142a6a (from https://www.piwheels.org/simple/mitos/)
2024-01-24T19:24:25,275   Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.1.2-py3-none-any.whl#sha256=b237b128b553848c12c5d387b10a20bbcb734b8672b3bf56fb2f3995e169c03d (from https://www.piwheels.org/simple/mitos/)
2024-01-24T19:24:25,276   Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.1.1-py3-none-any.whl#sha256=f0970e0e530a2a7759daafc81f1c79460dc85d15c1f34551d8394dce187dfe1c (from https://www.piwheels.org/simple/mitos/)
2024-01-24T19:24:25,276   Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.1.0-py3-none-any.whl#sha256=424b5172258baf2837d8a45e89224c12fdc3cc2a8f4ba0894e5c74111e754e5d (from https://www.piwheels.org/simple/mitos/)
2024-01-24T19:24:25,277   Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.5-py3-none-any.whl#sha256=f27a041efc520420cbffbb63a6c428a2ace092d6ffdc47942d6b9c434a281629 (from https://www.piwheels.org/simple/mitos/)
2024-01-24T19:24:25,277   Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.4-py3-none-any.whl#sha256=4c35b6595c7a62189502f6becaed4b2fe147f7ed6c6ee8d6b69fb4fda5e2139a (from https://www.piwheels.org/simple/mitos/)
2024-01-24T19:24:25,278   Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.3-py3-none-any.whl#sha256=7b62f2fcef8414d2a429f2f3c033e85c9377805612113e7103fa6793aa083cbc (from https://www.piwheels.org/simple/mitos/)
2024-01-24T19:24:25,278   Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.2-py3-none-any.whl#sha256=ba6a5f7a1d3a0a95106d401e13f7639c5ed2ecb367ab7899e2204b14aa9930a1 (from https://www.piwheels.org/simple/mitos/)
2024-01-24T19:24:25,279   Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.1-py3-none-any.whl#sha256=d216729f10eb3463d947658451c8f70fd97a9b2ca94cea55221f7a50f85749e2 (from https://www.piwheels.org/simple/mitos/)
2024-01-24T19:24:25,279   Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0-py3-none-any.whl#sha256=4f914c63f700f85163b395353782bcb87e49392f63c151f387dd4514694d0ac1 (from https://www.piwheels.org/simple/mitos/)
2024-01-24T19:24:25,280 Skipping link: not a file: https://www.piwheels.org/simple/mitos/
2024-01-24T19:24:25,281 Skipping link: not a file: https://pypi.org/simple/mitos/
2024-01-24T19:24:25,304 Given no hashes to check 1 links for project 'mitos': discarding no candidates
2024-01-24T19:24:25,323 Collecting mitos==1.1.5
2024-01-24T19:24:25,325   Created temporary directory: /tmp/pip-unpack-7xliqkbn
2024-01-24T19:24:25,537   Downloading mitos-1.1.5.tar.gz (240 kB)
2024-01-24T19:24:25,886   Added mitos==1.1.5 from https://files.pythonhosted.org/packages/aa/6d/1bb441bdbf6da2df6d00bafbcc3bcdca90a5ca20c4c66af513b54741a841/mitos-1.1.5.tar.gz to build tracker '/tmp/pip-build-tracker-c828e6u3'
2024-01-24T19:24:25,888   Running setup.py (path:/tmp/pip-wheel-6fke2md7/mitos_f42e83a5bc774f9989cd9ea57d412005/setup.py) egg_info for package mitos
2024-01-24T19:24:25,889   Created temporary directory: /tmp/pip-pip-egg-info-15x34t9_
2024-01-24T19:24:25,890   Preparing metadata (setup.py): started
2024-01-24T19:24:25,891   Running command python setup.py egg_info
2024-01-24T19:24:27,020   running egg_info
2024-01-24T19:24:27,021   creating /tmp/pip-pip-egg-info-15x34t9_/mitos.egg-info
2024-01-24T19:24:27,055   writing /tmp/pip-pip-egg-info-15x34t9_/mitos.egg-info/PKG-INFO
2024-01-24T19:24:27,058   writing dependency_links to /tmp/pip-pip-egg-info-15x34t9_/mitos.egg-info/dependency_links.txt
2024-01-24T19:24:27,059   writing requirements to /tmp/pip-pip-egg-info-15x34t9_/mitos.egg-info/requires.txt
2024-01-24T19:24:27,060   writing top-level names to /tmp/pip-pip-egg-info-15x34t9_/mitos.egg-info/top_level.txt
2024-01-24T19:24:27,062   writing manifest file '/tmp/pip-pip-egg-info-15x34t9_/mitos.egg-info/SOURCES.txt'
2024-01-24T19:24:27,218   reading manifest file '/tmp/pip-pip-egg-info-15x34t9_/mitos.egg-info/SOURCES.txt'
2024-01-24T19:24:27,219   reading manifest template 'MANIFEST.in'
2024-01-24T19:24:27,222   adding license file 'LICENSE'
2024-01-24T19:24:27,225   writing manifest file '/tmp/pip-pip-egg-info-15x34t9_/mitos.egg-info/SOURCES.txt'
2024-01-24T19:24:27,333   Preparing metadata (setup.py): finished with status 'done'
2024-01-24T19:24:27,337   Source in /tmp/pip-wheel-6fke2md7/mitos_f42e83a5bc774f9989cd9ea57d412005 has version 1.1.5, which satisfies requirement mitos==1.1.5 from https://files.pythonhosted.org/packages/aa/6d/1bb441bdbf6da2df6d00bafbcc3bcdca90a5ca20c4c66af513b54741a841/mitos-1.1.5.tar.gz
2024-01-24T19:24:27,338   Removed mitos==1.1.5 from https://files.pythonhosted.org/packages/aa/6d/1bb441bdbf6da2df6d00bafbcc3bcdca90a5ca20c4c66af513b54741a841/mitos-1.1.5.tar.gz from build tracker '/tmp/pip-build-tracker-c828e6u3'
2024-01-24T19:24:27,342 Created temporary directory: /tmp/pip-unpack-pq_t8rhc
2024-01-24T19:24:27,343 Created temporary directory: /tmp/pip-unpack-jt8yi6oq
2024-01-24T19:24:27,347 Building wheels for collected packages: mitos
2024-01-24T19:24:27,351   Created temporary directory: /tmp/pip-wheel-bgq5dm57
2024-01-24T19:24:27,352   Building wheel for mitos (setup.py): started
2024-01-24T19:24:27,353   Destination directory: /tmp/pip-wheel-bgq5dm57
2024-01-24T19:24:27,354   Running command python setup.py bdist_wheel
2024-01-24T19:24:28,718   running bdist_wheel
2024-01-24T19:24:28,848   running build
2024-01-24T19:24:28,849   running build_py
2024-01-24T19:24:28,884   creating build
2024-01-24T19:24:28,885   creating build/lib
2024-01-24T19:24:28,885   creating build/lib/mitos
2024-01-24T19:24:28,886   copying mitos/update-blastdb.py -> build/lib/mitos
2024-01-24T19:24:28,888   copying mitos/mitos-extension.py -> build/lib/mitos
2024-01-24T19:24:28,890   copying mitos/ogre-geneorder.py -> build/lib/mitos
2024-01-24T19:24:28,892   copying mitos/trnadist.py -> build/lib/mitos
2024-01-24T19:24:28,895   copying mitos/trna-cm.py -> build/lib/mitos
2024-01-24T19:24:28,901   copying mitos/CONFIG.py -> build/lib/mitos
2024-01-24T19:24:28,903   copying mitos/removegene.py -> build/lib/mitos
2024-01-24T19:24:28,904   copying mitos/inihit.py -> build/lib/mitos
2024-01-24T19:24:28,906   copying mitos/booreparser.py -> build/lib/mitos
2024-01-24T19:24:28,908   copying mitos/mitoloc.py -> build/lib/mitos
2024-01-24T19:24:28,910   copying mitos/create_prot_fasta.py -> build/lib/mitos
2024-01-24T19:24:28,912   copying mitos/skew.py -> build/lib/mitos
2024-01-24T19:24:28,914   copying mitos/convert_tree.py -> build/lib/mitos
2024-01-24T19:24:28,917   copying mitos/mitos-extension2.py -> build/lib/mitos
2024-01-24T19:24:28,919   copying mitos/mitoch_revisions.py -> build/lib/mitos
2024-01-24T19:24:28,922   copying mitos/__init__.py -> build/lib/mitos
2024-01-24T19:24:28,924   copying mitos/prepareFiles.py -> build/lib/mitos
2024-01-24T19:24:28,925   copying mitos/update-mitolog.py -> build/lib/mitos
2024-01-24T19:24:28,928   creating build/lib/mitos/gb
2024-01-24T19:24:28,929   copying mitos/gb/unify.py -> build/lib/mitos/gb
2024-01-24T19:24:28,931   copying mitos/gb/__init__.py -> build/lib/mitos/gb
2024-01-24T19:24:28,934   creating build/lib/mitos/rna
2024-01-24T19:24:28,935   copying mitos/rna/__init__.py -> build/lib/mitos/rna
2024-01-24T19:24:28,937   copying mitos/rna/forester.py -> build/lib/mitos/rna
2024-01-24T19:24:28,939   copying mitos/rna/vienna.py -> build/lib/mitos/rna
2024-01-24T19:24:28,941   creating build/lib/mitos/trna
2024-01-24T19:24:28,941   copying mitos/trna/arwenscan.py -> build/lib/mitos/trna
2024-01-24T19:24:28,943   copying mitos/trna/__init__.py -> build/lib/mitos/trna
2024-01-24T19:24:28,945   copying mitos/trna/trnascan.py -> build/lib/mitos/trna
2024-01-24T19:24:28,947   creating build/lib/mitos/feature
2024-01-24T19:24:28,948   copying mitos/feature/__init__.py -> build/lib/mitos/feature
2024-01-24T19:24:28,951   creating build/lib/mitos/tbl
2024-01-24T19:24:28,952   copying mitos/tbl/__init__.py -> build/lib/mitos/tbl
2024-01-24T19:24:28,955   creating build/lib/mitos/blast
2024-01-24T19:24:28,956   copying mitos/blast/__init__.py -> build/lib/mitos/blast
2024-01-24T19:24:28,959   creating build/lib/mitos/webserver
2024-01-24T19:24:28,960   copying mitos/webserver/__init__.py -> build/lib/mitos/webserver
2024-01-24T19:24:28,962   creating build/lib/mitos/bedfile
2024-01-24T19:24:28,963   copying mitos/bedfile/__init__.py -> build/lib/mitos/bedfile
2024-01-24T19:24:28,965   creating build/lib/mitos/gfffile
2024-01-24T19:24:28,966   copying mitos/gfffile/__init__.py -> build/lib/mitos/gfffile
2024-01-24T19:24:28,968   creating build/lib/mitos/extprog
2024-01-24T19:24:28,969   copying mitos/extprog/__init__.py -> build/lib/mitos/extprog
2024-01-24T19:24:28,972   creating build/lib/mitos/mito
2024-01-24T19:24:28,972   copying mitos/mito/__init__.py -> build/lib/mitos/mito
2024-01-24T19:24:28,975   creating build/lib/mitos/util
2024-01-24T19:24:28,975   copying mitos/util/__init__.py -> build/lib/mitos/util
2024-01-24T19:24:28,977   creating build/lib/mitos/draw
2024-01-24T19:24:28,978   copying mitos/draw/__init__.py -> build/lib/mitos/draw
2024-01-24T19:24:28,981   creating build/lib/mitos/codon
2024-01-24T19:24:28,981   copying mitos/codon/__init__.py -> build/lib/mitos/codon
2024-01-24T19:24:28,983   creating build/lib/mitos/mitfi
2024-01-24T19:24:28,984   copying mitos/mitfi/__init__.py -> build/lib/mitos/mitfi
2024-01-24T19:24:28,987   creating build/lib/mitos/sequence
2024-01-24T19:24:28,988   copying mitos/sequence/degenerate.py -> build/lib/mitos/sequence
2024-01-24T19:24:28,989   copying mitos/sequence/__init__.py -> build/lib/mitos/sequence
2024-01-24T19:24:28,992   creating build/lib/mitos/mergefeature
2024-01-24T19:24:28,993   copying mitos/mergefeature/__init__.py -> build/lib/mitos/mergefeature
2024-01-24T19:24:28,996   creating build/lib/mitos/update
2024-01-24T19:24:28,997   copying mitos/update/__init__.py -> build/lib/mitos/update
2024-01-24T19:24:28,999   creating build/lib/mitos/tax
2024-01-24T19:24:29,000   copying mitos/tax/__init__.py -> build/lib/mitos/tax
2024-01-24T19:24:29,002   creating build/lib/mitos/mitofile
2024-01-24T19:24:29,003   copying mitos/mitofile/__init__.py -> build/lib/mitos/mitofile
2024-01-24T19:24:29,005   running egg_info
2024-01-24T19:24:29,078   writing mitos.egg-info/PKG-INFO
2024-01-24T19:24:29,081   writing dependency_links to mitos.egg-info/dependency_links.txt
2024-01-24T19:24:29,082   writing requirements to mitos.egg-info/requires.txt
2024-01-24T19:24:29,084   writing top-level names to mitos.egg-info/top_level.txt
2024-01-24T19:24:29,131   reading manifest file 'mitos.egg-info/SOURCES.txt'
2024-01-24T19:24:29,135   reading manifest template 'MANIFEST.in'
2024-01-24T19:24:29,137   adding license file 'LICENSE'
2024-01-24T19:24:29,141   writing manifest file 'mitos.egg-info/SOURCES.txt'
2024-01-24T19:24:29,143   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'mitos.codons' is absent from the `packages` configuration.
2024-01-24T19:24:29,144   !!

2024-01-24T19:24:29,145           ********************************************************************************
2024-01-24T19:24:29,146           ############################
2024-01-24T19:24:29,147           # Package would be ignored #
2024-01-24T19:24:29,147           ############################
2024-01-24T19:24:29,148           Python recognizes 'mitos.codons' as an importable package[^1],
2024-01-24T19:24:29,148           but it is absent from setuptools' `packages` configuration.

2024-01-24T19:24:29,150           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-24T19:24:29,150           package, please make sure that 'mitos.codons' is explicitly added
2024-01-24T19:24:29,150           to the `packages` configuration field.

2024-01-24T19:24:29,151           Alternatively, you can also rely on setuptools' discovery methods
2024-01-24T19:24:29,152           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-24T19:24:29,152           instead of `find_packages(...)`/`find:`).

2024-01-24T19:24:29,153           You can read more about "package discovery" on setuptools documentation page:

2024-01-24T19:24:29,154           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-24T19:24:29,155           If you don't want 'mitos.codons' to be distributed and are
2024-01-24T19:24:29,155           already explicitly excluding 'mitos.codons' via
2024-01-24T19:24:29,156           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-24T19:24:29,156           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-24T19:24:29,157           combination with a more fine grained `package-data` configuration.

2024-01-24T19:24:29,157           You can read more about "package data files" on setuptools documentation page:

2024-01-24T19:24:29,158           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-24T19:24:29,160           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-24T19:24:29,160                 even if it does not contain any `.py` files.
2024-01-24T19:24:29,161                 On the other hand, currently there is no concept of package data
2024-01-24T19:24:29,161                 directory, all directories are treated like packages.
2024-01-24T19:24:29,162           ********************************************************************************

2024-01-24T19:24:29,163   !!
2024-01-24T19:24:29,163     check.warn(importable)
2024-01-24T19:24:29,164   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'mitos.mitfi.parser' is absent from the `packages` configuration.
2024-01-24T19:24:29,164   !!

2024-01-24T19:24:29,165           ********************************************************************************
2024-01-24T19:24:29,166           ############################
2024-01-24T19:24:29,166           # Package would be ignored #
2024-01-24T19:24:29,167           ############################
2024-01-24T19:24:29,167           Python recognizes 'mitos.mitfi.parser' as an importable package[^1],
2024-01-24T19:24:29,168           but it is absent from setuptools' `packages` configuration.

2024-01-24T19:24:29,169           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-24T19:24:29,169           package, please make sure that 'mitos.mitfi.parser' is explicitly added
2024-01-24T19:24:29,170           to the `packages` configuration field.

2024-01-24T19:24:29,171           Alternatively, you can also rely on setuptools' discovery methods
2024-01-24T19:24:29,171           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-24T19:24:29,172           instead of `find_packages(...)`/`find:`).

2024-01-24T19:24:29,173           You can read more about "package discovery" on setuptools documentation page:

2024-01-24T19:24:29,174           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-24T19:24:29,176           If you don't want 'mitos.mitfi.parser' to be distributed and are
2024-01-24T19:24:29,177           already explicitly excluding 'mitos.mitfi.parser' via
2024-01-24T19:24:29,178           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-24T19:24:29,178           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-24T19:24:29,178           combination with a more fine grained `package-data` configuration.

2024-01-24T19:24:29,180           You can read more about "package data files" on setuptools documentation page:

2024-01-24T19:24:29,181           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-24T19:24:29,182           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-24T19:24:29,183                 even if it does not contain any `.py` files.
2024-01-24T19:24:29,183                 On the other hand, currently there is no concept of package data
2024-01-24T19:24:29,183                 directory, all directories are treated like packages.
2024-01-24T19:24:29,184           ********************************************************************************

2024-01-24T19:24:29,184   !!
2024-01-24T19:24:29,185     check.warn(importable)
2024-01-24T19:24:29,185   copying mitos/plotprot.R -> build/lib/mitos
2024-01-24T19:24:29,186   copying mitos/plotrna.R -> build/lib/mitos
2024-01-24T19:24:29,186   creating build/lib/mitos/codons
2024-01-24T19:24:29,187   copying mitos/codons/gc.prt -> build/lib/mitos/codons
2024-01-24T19:24:29,187   copying mitos/webserver/DB_index.txt -> build/lib/mitos/webserver
2024-01-24T19:24:29,187   copying mitos/webserver/DB_search.txt -> build/lib/mitos/webserver
2024-01-24T19:24:29,188   copying mitos/webserver/help.txt -> build/lib/mitos/webserver
2024-01-24T19:24:29,188   copying mitos/webserver/history.txt -> build/lib/mitos/webserver
2024-01-24T19:24:29,189   copying mitos/webserver/index.txt -> build/lib/mitos/webserver
2024-01-24T19:24:29,189   copying mitos/webserver/news.txt -> build/lib/mitos/webserver
2024-01-24T19:24:29,190   copying mitos/webserver/upload.txt -> build/lib/mitos/webserver
2024-01-24T19:24:29,190   copying mitos/webserver/wait.txt -> build/lib/mitos/webserver
2024-01-24T19:24:29,191   creating build/lib/mitos/mitfi/parser
2024-01-24T19:24:29,191   copying mitos/mitfi/parser/improve_infernal_structure.jar -> build/lib/mitos/mitfi/parser
2024-01-24T19:24:29,193   copying mitos/mitfi/parser/mitfiGeneticCodes -> build/lib/mitos/mitfi/parser
2024-01-24T19:24:29,196   copying mitos/mitfi/parser/mitfi_import-1.1.jar -> build/lib/mitos/mitfi/parser
2024-01-24T19:24:29,199   copying mitos/mitfi/parser/mitfi_import.jar -> build/lib/mitos/mitfi/parser
2024-01-24T19:24:29,208   running build_scripts
2024-01-24T19:24:29,208   creating build/scripts-3.11
2024-01-24T19:24:29,209   copying and adjusting runmitos.py -> build/scripts-3.11
2024-01-24T19:24:29,212   copying and adjusting drawmitos.py -> build/scripts-3.11
2024-01-24T19:24:29,214   copying analyse.py -> build/scripts-3.11
2024-01-24T19:24:29,216   copying gcpp.py -> build/scripts-3.11
2024-01-24T19:24:29,218   copying and adjusting geneorder.py -> build/scripts-3.11
2024-01-24T19:24:29,221   copying and adjusting getfeatures.py -> build/scripts-3.11
2024-01-24T19:24:29,222   copying and adjusting getinfo.py -> build/scripts-3.11
2024-01-24T19:24:29,224   copying and adjusting refseqsplit.py -> build/scripts-3.11
2024-01-24T19:24:29,225   copying and adjusting subseq.py -> build/scripts-3.11
2024-01-24T19:24:29,227   copying and adjusting taxtree.py -> build/scripts-3.11
2024-01-24T19:24:29,230   copying mitos/plotprot.R -> build/scripts-3.11
2024-01-24T19:24:29,232   copying mitos/plotrna.R -> build/scripts-3.11
2024-01-24T19:24:29,233   changing mode of build/scripts-3.11/runmitos.py from 644 to 755
2024-01-24T19:24:29,233   changing mode of build/scripts-3.11/drawmitos.py from 644 to 755
2024-01-24T19:24:29,234   changing mode of build/scripts-3.11/analyse.py from 644 to 755
2024-01-24T19:24:29,235   changing mode of build/scripts-3.11/gcpp.py from 644 to 755
2024-01-24T19:24:29,235   changing mode of build/scripts-3.11/geneorder.py from 644 to 755
2024-01-24T19:24:29,236   changing mode of build/scripts-3.11/getfeatures.py from 644 to 755
2024-01-24T19:24:29,236   changing mode of build/scripts-3.11/getinfo.py from 644 to 755
2024-01-24T19:24:29,237   changing mode of build/scripts-3.11/refseqsplit.py from 644 to 755
2024-01-24T19:24:29,238   changing mode of build/scripts-3.11/subseq.py from 644 to 755
2024-01-24T19:24:29,238   changing mode of build/scripts-3.11/taxtree.py from 644 to 755
2024-01-24T19:24:29,270   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-01-24T19:24:29,270   !!

2024-01-24T19:24:29,271           ********************************************************************************
2024-01-24T19:24:29,272           Please avoid running ``setup.py`` directly.
2024-01-24T19:24:29,272           Instead, use pypa/build, pypa/installer or other
2024-01-24T19:24:29,273           standards-based tools.

2024-01-24T19:24:29,273           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-01-24T19:24:29,274           ********************************************************************************

2024-01-24T19:24:29,275   !!
2024-01-24T19:24:29,275     self.initialize_options()
2024-01-24T19:24:29,303   installing to build/bdist.linux-armv7l/wheel
2024-01-24T19:24:29,303   running install
2024-01-24T19:24:29,328   running install_lib
2024-01-24T19:24:29,360   creating build/bdist.linux-armv7l
2024-01-24T19:24:29,361   creating build/bdist.linux-armv7l/wheel
2024-01-24T19:24:29,362   creating build/bdist.linux-armv7l/wheel/mitos
2024-01-24T19:24:29,363   copying build/lib/mitos/update-blastdb.py -> build/bdist.linux-armv7l/wheel/mitos
2024-01-24T19:24:29,365   copying build/lib/mitos/mitos-extension.py -> build/bdist.linux-armv7l/wheel/mitos
2024-01-24T19:24:29,367   copying build/lib/mitos/ogre-geneorder.py -> build/bdist.linux-armv7l/wheel/mitos
2024-01-24T19:24:29,369   creating build/bdist.linux-armv7l/wheel/mitos/gb
2024-01-24T19:24:29,370   copying build/lib/mitos/gb/unify.py -> build/bdist.linux-armv7l/wheel/mitos/gb
2024-01-24T19:24:29,373   copying build/lib/mitos/gb/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/gb
2024-01-24T19:24:29,375   copying build/lib/mitos/trnadist.py -> build/bdist.linux-armv7l/wheel/mitos
2024-01-24T19:24:29,378   creating build/bdist.linux-armv7l/wheel/mitos/rna
2024-01-24T19:24:29,379   copying build/lib/mitos/rna/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/rna
2024-01-24T19:24:29,381   copying build/lib/mitos/rna/forester.py -> build/bdist.linux-armv7l/wheel/mitos/rna
2024-01-24T19:24:29,383   copying build/lib/mitos/rna/vienna.py -> build/bdist.linux-armv7l/wheel/mitos/rna
2024-01-24T19:24:29,384   copying build/lib/mitos/trna-cm.py -> build/bdist.linux-armv7l/wheel/mitos
2024-01-24T19:24:29,390   creating build/bdist.linux-armv7l/wheel/mitos/trna
2024-01-24T19:24:29,391   copying build/lib/mitos/trna/arwenscan.py -> build/bdist.linux-armv7l/wheel/mitos/trna
2024-01-24T19:24:29,393   copying build/lib/mitos/trna/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/trna
2024-01-24T19:24:29,395   copying build/lib/mitos/trna/trnascan.py -> build/bdist.linux-armv7l/wheel/mitos/trna
2024-01-24T19:24:29,397   creating build/bdist.linux-armv7l/wheel/mitos/feature
2024-01-24T19:24:29,398   copying build/lib/mitos/feature/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/feature
2024-01-24T19:24:29,401   creating build/bdist.linux-armv7l/wheel/mitos/tbl
2024-01-24T19:24:29,402   copying build/lib/mitos/tbl/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/tbl
2024-01-24T19:24:29,404   copying build/lib/mitos/CONFIG.py -> build/bdist.linux-armv7l/wheel/mitos
2024-01-24T19:24:29,406   copying build/lib/mitos/removegene.py -> build/bdist.linux-armv7l/wheel/mitos
2024-01-24T19:24:29,408   creating build/bdist.linux-armv7l/wheel/mitos/blast
2024-01-24T19:24:29,409   copying build/lib/mitos/blast/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/blast
2024-01-24T19:24:29,412   copying build/lib/mitos/inihit.py -> build/bdist.linux-armv7l/wheel/mitos
2024-01-24T19:24:29,414   copying build/lib/mitos/booreparser.py -> build/bdist.linux-armv7l/wheel/mitos
2024-01-24T19:24:29,417   creating build/bdist.linux-armv7l/wheel/mitos/webserver
2024-01-24T19:24:29,418   copying build/lib/mitos/webserver/news.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver
2024-01-24T19:24:29,420   copying build/lib/mitos/webserver/help.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver
2024-01-24T19:24:29,425   copying build/lib/mitos/webserver/index.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver
2024-01-24T19:24:29,427   copying build/lib/mitos/webserver/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/webserver
2024-01-24T19:24:29,429   copying build/lib/mitos/webserver/history.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver
2024-01-24T19:24:29,430   copying build/lib/mitos/webserver/DB_index.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver
2024-01-24T19:24:29,432   copying build/lib/mitos/webserver/wait.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver
2024-01-24T19:24:29,433   copying build/lib/mitos/webserver/DB_search.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver
2024-01-24T19:24:29,435   copying build/lib/mitos/webserver/upload.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver
2024-01-24T19:24:29,437   creating build/bdist.linux-armv7l/wheel/mitos/bedfile
2024-01-24T19:24:29,438   copying build/lib/mitos/bedfile/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/bedfile
2024-01-24T19:24:29,440   creating build/bdist.linux-armv7l/wheel/mitos/gfffile
2024-01-24T19:24:29,441   copying build/lib/mitos/gfffile/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/gfffile
2024-01-24T19:24:29,443   creating build/bdist.linux-armv7l/wheel/mitos/codons
2024-01-24T19:24:29,444   copying build/lib/mitos/codons/gc.prt -> build/bdist.linux-armv7l/wheel/mitos/codons
2024-01-24T19:24:29,447   copying build/lib/mitos/mitoloc.py -> build/bdist.linux-armv7l/wheel/mitos
2024-01-24T19:24:29,449   creating build/bdist.linux-armv7l/wheel/mitos/extprog
2024-01-24T19:24:29,450   copying build/lib/mitos/extprog/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/extprog
2024-01-24T19:24:29,452   creating build/bdist.linux-armv7l/wheel/mitos/mito
2024-01-24T19:24:29,453   copying build/lib/mitos/mito/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mito
2024-01-24T19:24:29,455   creating build/bdist.linux-armv7l/wheel/mitos/util
2024-01-24T19:24:29,456   copying build/lib/mitos/util/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/util
2024-01-24T19:24:29,458   creating build/bdist.linux-armv7l/wheel/mitos/draw
2024-01-24T19:24:29,459   copying build/lib/mitos/draw/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/draw
2024-01-24T19:24:29,462   copying build/lib/mitos/create_prot_fasta.py -> build/bdist.linux-armv7l/wheel/mitos
2024-01-24T19:24:29,464   copying build/lib/mitos/skew.py -> build/bdist.linux-armv7l/wheel/mitos
2024-01-24T19:24:29,466   copying build/lib/mitos/convert_tree.py -> build/bdist.linux-armv7l/wheel/mitos
2024-01-24T19:24:29,469   creating build/bdist.linux-armv7l/wheel/mitos/codon
2024-01-24T19:24:29,470   copying build/lib/mitos/codon/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/codon
2024-01-24T19:24:29,472   copying build/lib/mitos/mitos-extension2.py -> build/bdist.linux-armv7l/wheel/mitos
2024-01-24T19:24:29,475   copying build/lib/mitos/mitoch_revisions.py -> build/bdist.linux-armv7l/wheel/mitos
2024-01-24T19:24:29,478   copying build/lib/mitos/__init__.py -> build/bdist.linux-armv7l/wheel/mitos
2024-01-24T19:24:29,479   copying build/lib/mitos/plotprot.R -> build/bdist.linux-armv7l/wheel/mitos
2024-01-24T19:24:29,482   creating build/bdist.linux-armv7l/wheel/mitos/mitfi
2024-01-24T19:24:29,483   creating build/bdist.linux-armv7l/wheel/mitos/mitfi/parser
2024-01-24T19:24:29,484   copying build/lib/mitos/mitfi/parser/mitfiGeneticCodes -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser
2024-01-24T19:24:29,487   copying build/lib/mitos/mitfi/parser/mitfi_import-1.1.jar -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser
2024-01-24T19:24:29,489   copying build/lib/mitos/mitfi/parser/mitfi_import.jar -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser
2024-01-24T19:24:29,492   copying build/lib/mitos/mitfi/parser/improve_infernal_structure.jar -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser
2024-01-24T19:24:29,494   copying build/lib/mitos/mitfi/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mitfi
2024-01-24T19:24:29,496   creating build/bdist.linux-armv7l/wheel/mitos/sequence
2024-01-24T19:24:29,497   copying build/lib/mitos/sequence/degenerate.py -> build/bdist.linux-armv7l/wheel/mitos/sequence
2024-01-24T19:24:29,499   copying build/lib/mitos/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/sequence
2024-01-24T19:24:29,501   copying build/lib/mitos/prepareFiles.py -> build/bdist.linux-armv7l/wheel/mitos
2024-01-24T19:24:29,503   creating build/bdist.linux-armv7l/wheel/mitos/mergefeature
2024-01-24T19:24:29,504   copying build/lib/mitos/mergefeature/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mergefeature
2024-01-24T19:24:29,507   copying build/lib/mitos/plotrna.R -> build/bdist.linux-armv7l/wheel/mitos
2024-01-24T19:24:29,509   copying build/lib/mitos/update-mitolog.py -> build/bdist.linux-armv7l/wheel/mitos
2024-01-24T19:24:29,512   creating build/bdist.linux-armv7l/wheel/mitos/update
2024-01-24T19:24:29,513   copying build/lib/mitos/update/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/update
2024-01-24T19:24:29,516   creating build/bdist.linux-armv7l/wheel/mitos/tax
2024-01-24T19:24:29,517   copying build/lib/mitos/tax/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/tax
2024-01-24T19:24:29,519   creating build/bdist.linux-armv7l/wheel/mitos/mitofile
2024-01-24T19:24:29,520   copying build/lib/mitos/mitofile/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mitofile
2024-01-24T19:24:29,522   running install_egg_info
2024-01-24T19:24:29,564   Copying mitos.egg-info to build/bdist.linux-armv7l/wheel/mitos-1.1.5-py3.11.egg-info
2024-01-24T19:24:29,573   running install_scripts
2024-01-24T19:24:29,575   creating build/bdist.linux-armv7l/wheel/mitos-1.1.5.data
2024-01-24T19:24:29,576   creating build/bdist.linux-armv7l/wheel/mitos-1.1.5.data/scripts
2024-01-24T19:24:29,577   copying build/scripts-3.11/drawmitos.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.5.data/scripts
2024-01-24T19:24:29,579   copying build/scripts-3.11/refseqsplit.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.5.data/scripts
2024-01-24T19:24:29,581   copying build/scripts-3.11/gcpp.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.5.data/scripts
2024-01-24T19:24:29,584   copying build/scripts-3.11/subseq.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.5.data/scripts
2024-01-24T19:24:29,586   copying build/scripts-3.11/taxtree.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.5.data/scripts
2024-01-24T19:24:29,589   copying build/scripts-3.11/getinfo.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.5.data/scripts
2024-01-24T19:24:29,591   copying build/scripts-3.11/plotprot.R -> build/bdist.linux-armv7l/wheel/mitos-1.1.5.data/scripts
2024-01-24T19:24:29,593   copying build/scripts-3.11/getfeatures.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.5.data/scripts
2024-01-24T19:24:29,595   copying build/scripts-3.11/runmitos.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.5.data/scripts
2024-01-24T19:24:29,598   copying build/scripts-3.11/geneorder.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.5.data/scripts
2024-01-24T19:24:29,601   copying build/scripts-3.11/plotrna.R -> build/bdist.linux-armv7l/wheel/mitos-1.1.5.data/scripts
2024-01-24T19:24:29,603   copying build/scripts-3.11/analyse.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.5.data/scripts
2024-01-24T19:24:29,605   changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.5.data/scripts/drawmitos.py to 755
2024-01-24T19:24:29,606   changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.5.data/scripts/refseqsplit.py to 755
2024-01-24T19:24:29,607   changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.5.data/scripts/gcpp.py to 755
2024-01-24T19:24:29,607   changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.5.data/scripts/subseq.py to 755
2024-01-24T19:24:29,608   changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.5.data/scripts/taxtree.py to 755
2024-01-24T19:24:29,609   changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.5.data/scripts/getinfo.py to 755
2024-01-24T19:24:29,610   changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.5.data/scripts/plotprot.R to 755
2024-01-24T19:24:29,610   changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.5.data/scripts/getfeatures.py to 755
2024-01-24T19:24:29,611   changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.5.data/scripts/runmitos.py to 755
2024-01-24T19:24:29,612   changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.5.data/scripts/geneorder.py to 755
2024-01-24T19:24:29,612   changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.5.data/scripts/plotrna.R to 755
2024-01-24T19:24:29,613   changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.5.data/scripts/analyse.py to 755
2024-01-24T19:24:29,626   creating build/bdist.linux-armv7l/wheel/mitos-1.1.5.dist-info/WHEEL
2024-01-24T19:24:29,629   creating '/tmp/pip-wheel-bgq5dm57/mitos-1.1.5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-01-24T19:24:29,632   adding 'mitos/CONFIG.py'
2024-01-24T19:24:29,633   adding 'mitos/__init__.py'
2024-01-24T19:24:29,636   adding 'mitos/booreparser.py'
2024-01-24T19:24:29,640   adding 'mitos/convert_tree.py'
2024-01-24T19:24:29,642   adding 'mitos/create_prot_fasta.py'
2024-01-24T19:24:29,645   adding 'mitos/inihit.py'
2024-01-24T19:24:29,650   adding 'mitos/mitoch_revisions.py'
2024-01-24T19:24:29,652   adding 'mitos/mitoloc.py'
2024-01-24T19:24:29,655   adding 'mitos/mitos-extension.py'
2024-01-24T19:24:29,658   adding 'mitos/mitos-extension2.py'
2024-01-24T19:24:29,660   adding 'mitos/ogre-geneorder.py'
2024-01-24T19:24:29,661   adding 'mitos/plotprot.R'
2024-01-24T19:24:29,663   adding 'mitos/plotrna.R'
2024-01-24T19:24:29,665   adding 'mitos/prepareFiles.py'
2024-01-24T19:24:29,667   adding 'mitos/removegene.py'
2024-01-24T19:24:29,669   adding 'mitos/skew.py'
2024-01-24T19:24:29,685   adding 'mitos/trna-cm.py'
2024-01-24T19:24:29,689   adding 'mitos/trnadist.py'
2024-01-24T19:24:29,691   adding 'mitos/update-blastdb.py'
2024-01-24T19:24:29,693   adding 'mitos/update-mitolog.py'
2024-01-24T19:24:29,695   adding 'mitos/bedfile/__init__.py'
2024-01-24T19:24:29,701   adding 'mitos/blast/__init__.py'
2024-01-24T19:24:29,703   adding 'mitos/codon/__init__.py'
2024-01-24T19:24:29,706   adding 'mitos/codons/gc.prt'
2024-01-24T19:24:29,708   adding 'mitos/draw/__init__.py'
2024-01-24T19:24:29,711   adding 'mitos/extprog/__init__.py'
2024-01-24T19:24:29,714   adding 'mitos/feature/__init__.py'
2024-01-24T19:24:29,719   adding 'mitos/gb/__init__.py'
2024-01-24T19:24:29,722   adding 'mitos/gb/unify.py'
2024-01-24T19:24:29,724   adding 'mitos/gfffile/__init__.py'
2024-01-24T19:24:29,728   adding 'mitos/mergefeature/__init__.py'
2024-01-24T19:24:29,730   adding 'mitos/mitfi/__init__.py'
2024-01-24T19:24:29,733   adding 'mitos/mitfi/parser/improve_infernal_structure.jar'
2024-01-24T19:24:29,735   adding 'mitos/mitfi/parser/mitfiGeneticCodes'
2024-01-24T19:24:29,739   adding 'mitos/mitfi/parser/mitfi_import-1.1.jar'
2024-01-24T19:24:29,743   adding 'mitos/mitfi/parser/mitfi_import.jar'
2024-01-24T19:24:29,745   adding 'mitos/mito/__init__.py'
2024-01-24T19:24:29,748   adding 'mitos/mitofile/__init__.py'
2024-01-24T19:24:29,749   adding 'mitos/rna/__init__.py'
2024-01-24T19:24:29,751   adding 'mitos/rna/forester.py'
2024-01-24T19:24:29,753   adding 'mitos/rna/vienna.py'
2024-01-24T19:24:29,756   adding 'mitos/sequence/__init__.py'
2024-01-24T19:24:29,758   adding 'mitos/sequence/degenerate.py'
2024-01-24T19:24:29,760   adding 'mitos/tax/__init__.py'
2024-01-24T19:24:29,762   adding 'mitos/tbl/__init__.py'
2024-01-24T19:24:29,765   adding 'mitos/trna/__init__.py'
2024-01-24T19:24:29,767   adding 'mitos/trna/arwenscan.py'
2024-01-24T19:24:29,769   adding 'mitos/trna/trnascan.py'
2024-01-24T19:24:29,772   adding 'mitos/update/__init__.py'
2024-01-24T19:24:29,774   adding 'mitos/util/__init__.py'
2024-01-24T19:24:29,776   adding 'mitos/webserver/DB_index.txt'
2024-01-24T19:24:29,778   adding 'mitos/webserver/DB_search.txt'
2024-01-24T19:24:29,780   adding 'mitos/webserver/__init__.py'
2024-01-24T19:24:29,804   adding 'mitos/webserver/help.txt'
2024-01-24T19:24:29,807   adding 'mitos/webserver/history.txt'
2024-01-24T19:24:29,809   adding 'mitos/webserver/index.txt'
2024-01-24T19:24:29,810   adding 'mitos/webserver/news.txt'
2024-01-24T19:24:29,812   adding 'mitos/webserver/upload.txt'
2024-01-24T19:24:29,813   adding 'mitos/webserver/wait.txt'
2024-01-24T19:24:29,817   adding 'mitos-1.1.5.data/scripts/analyse.py'
2024-01-24T19:24:29,818   adding 'mitos-1.1.5.data/scripts/drawmitos.py'
2024-01-24T19:24:29,820   adding 'mitos-1.1.5.data/scripts/gcpp.py'
2024-01-24T19:24:29,822   adding 'mitos-1.1.5.data/scripts/geneorder.py'
2024-01-24T19:24:29,823   adding 'mitos-1.1.5.data/scripts/getfeatures.py'
2024-01-24T19:24:29,824   adding 'mitos-1.1.5.data/scripts/getinfo.py'
2024-01-24T19:24:29,826   adding 'mitos-1.1.5.data/scripts/plotprot.R'
2024-01-24T19:24:29,827   adding 'mitos-1.1.5.data/scripts/plotrna.R'
2024-01-24T19:24:29,828   adding 'mitos-1.1.5.data/scripts/refseqsplit.py'
2024-01-24T19:24:29,831   adding 'mitos-1.1.5.data/scripts/runmitos.py'
2024-01-24T19:24:29,832   adding 'mitos-1.1.5.data/scripts/subseq.py'
2024-01-24T19:24:29,834   adding 'mitos-1.1.5.data/scripts/taxtree.py'
2024-01-24T19:24:29,836   adding 'mitos-1.1.5.dist-info/LICENSE'
2024-01-24T19:24:29,837   adding 'mitos-1.1.5.dist-info/METADATA'
2024-01-24T19:24:29,838   adding 'mitos-1.1.5.dist-info/WHEEL'
2024-01-24T19:24:29,839   adding 'mitos-1.1.5.dist-info/top_level.txt'
2024-01-24T19:24:29,840   adding 'mitos-1.1.5.dist-info/RECORD'
2024-01-24T19:24:29,845   removing build/bdist.linux-armv7l/wheel
2024-01-24T19:24:29,978   Building wheel for mitos (setup.py): finished with status 'done'
2024-01-24T19:24:29,983   Created wheel for mitos: filename=mitos-1.1.5-py3-none-any.whl size=275488 sha256=ae7a240619a3688130de5e6be1d0c3ee8dbcfaf3aab6f5f193d8485e02dc29df
2024-01-24T19:24:29,985   Stored in directory: /tmp/pip-ephem-wheel-cache-71ces_tq/wheels/e8/ad/ee/29dca77ddae87166c52448b495a2d5b07786c95e5b9fe34b2f
2024-01-24T19:24:29,997 Successfully built mitos
2024-01-24T19:24:30,007 Removed build tracker: '/tmp/pip-build-tracker-c828e6u3'