2024-01-25T07:13:51,621 Created temporary directory: /tmp/pip-build-tracker-i235kr6a 2024-01-25T07:13:51,622 Initialized build tracking at /tmp/pip-build-tracker-i235kr6a 2024-01-25T07:13:51,622 Created build tracker: /tmp/pip-build-tracker-i235kr6a 2024-01-25T07:13:51,623 Entered build tracker: /tmp/pip-build-tracker-i235kr6a 2024-01-25T07:13:51,624 Created temporary directory: /tmp/pip-wheel-j5yfw8si 2024-01-25T07:13:51,627 Created temporary directory: /tmp/pip-ephem-wheel-cache-t5asnezs 2024-01-25T07:13:51,649 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-25T07:13:51,652 2 location(s) to search for versions of witch-msa: 2024-01-25T07:13:51,652 * https://pypi.org/simple/witch-msa/ 2024-01-25T07:13:51,652 * https://www.piwheels.org/simple/witch-msa/ 2024-01-25T07:13:51,653 Fetching project page and analyzing links: https://pypi.org/simple/witch-msa/ 2024-01-25T07:13:51,654 Getting page https://pypi.org/simple/witch-msa/ 2024-01-25T07:13:51,655 Found index url https://pypi.org/simple/ 2024-01-25T07:13:51,871 Fetched page https://pypi.org/simple/witch-msa/ as application/vnd.pypi.simple.v1+json 2024-01-25T07:13:51,875 Found link https://files.pythonhosted.org/packages/9f/57/80dd0c29162c6b84cd017182095b5cb2aa4dc11260bbae056f3ef0351943/witch-msa-1.0.0rc1.tar.gz (from https://pypi.org/simple/witch-msa/) (requires-python:>=3.7), version: 1.0.0rc1 2024-01-25T07:13:51,876 Skipping link: No binaries permitted for witch-msa: https://files.pythonhosted.org/packages/43/78/272d4d835763bc77476391081248647987723a7b0226719cd93618a44b8a/witch_msa-1.0.0rc1-py3-none-any.whl (from https://pypi.org/simple/witch-msa/) (requires-python:>=3.7) 2024-01-25T07:13:51,877 Found link https://files.pythonhosted.org/packages/04/42/abe66ef86387d93b5b0bc9f23ec71b3660310d62820b56cb6315b13db266/witch-msa-1.0.0rc3.tar.gz (from https://pypi.org/simple/witch-msa/) (requires-python:>=3.7), version: 1.0.0rc3 2024-01-25T07:13:51,878 Skipping link: No binaries permitted for witch-msa: https://files.pythonhosted.org/packages/d5/e8/f939cdd95425dcd48632cc7a2fdaa939beabfed6d2004dff600c8afc0be1/witch_msa-1.0.0rc3-py3-none-any.whl (from https://pypi.org/simple/witch-msa/) (requires-python:>=3.7) 2024-01-25T07:13:51,879 Found link https://files.pythonhosted.org/packages/18/10/e568ef8fa1a5a231130cc83c420b1bed9bf69ceaf17911f5b45f67496b39/witch-msa-1.0.0rc4.tar.gz (from https://pypi.org/simple/witch-msa/) (requires-python:>=3.7), version: 1.0.0rc4 2024-01-25T07:13:51,880 Skipping link: No binaries permitted for witch-msa: https://files.pythonhosted.org/packages/de/20/c1d8c0f03fe35ea092495a73a29d3bca6a94ea55ea917d04b73cc7582215/witch_msa-1.0.0rc4-py3-none-any.whl (from https://pypi.org/simple/witch-msa/) (requires-python:>=3.7) 2024-01-25T07:13:51,881 Found link https://files.pythonhosted.org/packages/19/e6/150568e28ab0565dd78080eba70d4d2254038ef55327b82919e5915c6101/witch-msa-1.0.1.tar.gz (from https://pypi.org/simple/witch-msa/) (requires-python:>=3.7), version: 1.0.1 2024-01-25T07:13:51,881 Skipping link: No binaries permitted for witch-msa: https://files.pythonhosted.org/packages/6a/bf/e791b97aa9ff2e5592b40328ac11461a5dae4ecd40e175d1349be75cf37a/witch_msa-1.0.1-py3-none-any.whl (from https://pypi.org/simple/witch-msa/) (requires-python:>=3.7) 2024-01-25T07:13:51,882 Found link https://files.pythonhosted.org/packages/c6/81/4a0953d4b062ea116c7e89fbeb65f537958b489d02bee8263b6044d3aeb5/witch-msa-1.0.2a1.tar.gz (from https://pypi.org/simple/witch-msa/) (requires-python:>=3.7), version: 1.0.2a1 2024-01-25T07:13:51,883 Skipping link: No binaries permitted for witch-msa: https://files.pythonhosted.org/packages/ac/96/5021e8835aef45c1a4f6b35c072002d7b7fd870cb4fe75f87b71b5d163b2/witch_msa-1.0.2a1-py3-none-any.whl (from https://pypi.org/simple/witch-msa/) (requires-python:>=3.7) 2024-01-25T07:13:51,884 Found link https://files.pythonhosted.org/packages/64/5e/5c1c155504577b54c69c77cab4f13b188e09352f4e1f6bdee2cd24fdc79b/witch-msa-1.0.2.tar.gz (from https://pypi.org/simple/witch-msa/) (requires-python:>=3.7), version: 1.0.2 2024-01-25T07:13:51,885 Skipping link: No binaries permitted for witch-msa: https://files.pythonhosted.org/packages/20/8a/6d9b66587c199643ee2fa476eca10667d34c5f1b98f0f50a1b67a255d245/witch_msa-1.0.2-py3-none-any.whl (from https://pypi.org/simple/witch-msa/) (requires-python:>=3.7) 2024-01-25T07:13:51,886 Found link https://files.pythonhosted.org/packages/f5/84/70bab77fd75eeb0c8557e2495155d0a39827d2289982ef06f3402e08ef13/witch-msa-1.0.3.tar.gz (from https://pypi.org/simple/witch-msa/) (requires-python:>=3.7), version: 1.0.3 2024-01-25T07:13:51,886 Skipping link: No binaries permitted for witch-msa: https://files.pythonhosted.org/packages/7d/49/5e72750b8258bae5aa24b17b926270da899830bb2b6e8372c1b1e86d36af/witch_msa-1.0.3-py3-none-any.whl (from https://pypi.org/simple/witch-msa/) (requires-python:>=3.7) 2024-01-25T07:13:51,887 Found link https://files.pythonhosted.org/packages/b3/66/f3d12c4255323801647f4b20b624a415db11e90ebcb83dfb6127e8df4074/witch-msa-1.0.4.tar.gz (from https://pypi.org/simple/witch-msa/) (requires-python:>=3.7), version: 1.0.4 2024-01-25T07:13:51,888 Skipping link: No binaries permitted for witch-msa: https://files.pythonhosted.org/packages/e8/aa/099ea7d14accf6a544cd67e8675980452ad95bf6193d211e839e488b7646/witch_msa-1.0.4-py3-none-any.whl (from https://pypi.org/simple/witch-msa/) (requires-python:>=3.7) 2024-01-25T07:13:51,888 Fetching project page and analyzing links: https://www.piwheels.org/simple/witch-msa/ 2024-01-25T07:13:51,889 Getting page https://www.piwheels.org/simple/witch-msa/ 2024-01-25T07:13:51,890 Found index url https://www.piwheels.org/simple/ 2024-01-25T07:13:52,052 Fetched page https://www.piwheels.org/simple/witch-msa/ as text/html 2024-01-25T07:13:52,056 Skipping link: No binaries permitted for witch-msa: https://www.piwheels.org/simple/witch-msa/witch_msa-1.0.3-py3-none-any.whl#sha256=440a84378a0a3cfeb2b13eb10fbd1d017e3b35d32520d00941a364f9ed34839f (from https://www.piwheels.org/simple/witch-msa/) (requires-python:>=3.7) 2024-01-25T07:13:52,056 Skipping link: No binaries permitted for witch-msa: https://www.piwheels.org/simple/witch-msa/witch_msa-1.0.2-py3-none-any.whl#sha256=6c112c92ccb048e378cb6201a41fe7025037418782b80ea7b41046fac80fb81c (from https://www.piwheels.org/simple/witch-msa/) (requires-python:>=3.7) 2024-01-25T07:13:52,057 Skipping link: No binaries permitted for witch-msa: https://www.piwheels.org/simple/witch-msa/witch_msa-1.0.2a1-py3-none-any.whl#sha256=4ba431635ab1cb66b533f39a613a0451577fdbf854dace83aad27dbac829afac (from https://www.piwheels.org/simple/witch-msa/) (requires-python:>=3.7) 2024-01-25T07:13:52,057 Skipping link: No binaries permitted for witch-msa: https://www.piwheels.org/simple/witch-msa/witch_msa-1.0.1-py3-none-any.whl#sha256=9a991d73586803bc132937a46dd0adf27f1c8b87b2e31d0a029497a7b20fd007 (from https://www.piwheels.org/simple/witch-msa/) (requires-python:>=3.7) 2024-01-25T07:13:52,058 Skipping link: No binaries permitted for witch-msa: https://www.piwheels.org/simple/witch-msa/witch_msa-1.0.0rc4-py3-none-any.whl#sha256=2c2a928f16f5a02983f953a35cc22dfab97abebe5984290e665cfb59e940d4e3 (from https://www.piwheels.org/simple/witch-msa/) (requires-python:>=3.7) 2024-01-25T07:13:52,059 Skipping link: No binaries permitted for witch-msa: https://www.piwheels.org/simple/witch-msa/witch_msa-1.0.0rc3-py3-none-any.whl#sha256=c99577c2a6e9a75c03f497d93f5f54ee9a04036357ca0b4cfb53f08df1f8023f (from https://www.piwheels.org/simple/witch-msa/) (requires-python:>=3.7) 2024-01-25T07:13:52,059 Skipping link: No binaries permitted for witch-msa: https://www.piwheels.org/simple/witch-msa/witch_msa-1.0.0rc1-py3-none-any.whl#sha256=7639b8df3d4a6b6fc2a4e2654e2da8d9636881239740deb58f44b604e93074d6 (from https://www.piwheels.org/simple/witch-msa/) (requires-python:>=3.7) 2024-01-25T07:13:52,060 Skipping link: not a file: https://www.piwheels.org/simple/witch-msa/ 2024-01-25T07:13:52,061 Skipping link: not a file: https://pypi.org/simple/witch-msa/ 2024-01-25T07:13:52,081 Given no hashes to check 1 links for project 'witch-msa': discarding no candidates 2024-01-25T07:13:52,100 Collecting witch-msa==1.0.4 2024-01-25T07:13:52,103 Created temporary directory: /tmp/pip-unpack-4zeh2w3v 2024-01-25T07:13:52,323 Downloading witch-msa-1.0.4.tar.gz (29.0 MB) 2024-01-25T07:14:02,205 Added witch-msa==1.0.4 from https://files.pythonhosted.org/packages/b3/66/f3d12c4255323801647f4b20b624a415db11e90ebcb83dfb6127e8df4074/witch-msa-1.0.4.tar.gz to build tracker '/tmp/pip-build-tracker-i235kr6a' 2024-01-25T07:14:02,212 Created temporary directory: /tmp/pip-build-env-gtem25y8 2024-01-25T07:14:02,222 Installing build dependencies: started 2024-01-25T07:14:02,224 Running command pip subprocess to install build dependencies 2024-01-25T07:14:03,455 Using pip 23.3.1 from /home/piwheels/.local/lib/python3.11/site-packages/pip (python 3.11) 2024-01-25T07:14:03,993 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-25T07:14:05,408 Collecting setuptools 2024-01-25T07:14:05,422 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.0.3-py3-none-any.whl (819 kB) 2024-01-25T07:14:08,140 Installing collected packages: setuptools 2024-01-25T07:14:10,384 Successfully installed setuptools-69.0.3 2024-01-25T07:14:10,644 [notice] A new release of pip is available: 23.3.1 -> 23.3.2 2024-01-25T07:14:10,644 [notice] To update, run: python3 -m pip install --upgrade pip 2024-01-25T07:14:10,906 Installing build dependencies: finished with status 'done' 2024-01-25T07:14:10,909 Getting requirements to build wheel: started 2024-01-25T07:14:10,911 Running command Getting requirements to build wheel 2024-01-25T07:14:11,663 running egg_info 2024-01-25T07:14:11,667 writing witch_msa.egg-info/PKG-INFO 2024-01-25T07:14:11,672 writing dependency_links to witch_msa.egg-info/dependency_links.txt 2024-01-25T07:14:11,674 writing requirements to witch_msa.egg-info/requires.txt 2024-01-25T07:14:11,675 writing top-level names to witch_msa.egg-info/top_level.txt 2024-01-25T07:14:11,694 reading manifest file 'witch_msa.egg-info/SOURCES.txt' 2024-01-25T07:14:11,711 reading manifest template 'MANIFEST.in' 2024-01-25T07:14:11,729 no previously-included directories found matching '*/__pycache__' 2024-01-25T07:14:11,730 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2024-01-25T07:14:11,731 adding license file 'LICENSE' 2024-01-25T07:14:11,739 writing manifest file 'witch_msa.egg-info/SOURCES.txt' 2024-01-25T07:14:11,850 Getting requirements to build wheel: finished with status 'done' 2024-01-25T07:14:11,857 Installing backend dependencies: started 2024-01-25T07:14:11,859 Running command pip subprocess to install backend dependencies 2024-01-25T07:14:13,002 Using pip 23.3.1 from /home/piwheels/.local/lib/python3.11/site-packages/pip (python 3.11) 2024-01-25T07:14:13,537 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-25T07:14:14,019 Collecting wheel 2024-01-25T07:14:14,036 Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB) 2024-01-25T07:14:16,836 Installing collected packages: wheel 2024-01-25T07:14:17,058 Creating /tmp/pip-build-env-gtem25y8/normal/local/bin 2024-01-25T07:14:17,060 changing mode of /tmp/pip-build-env-gtem25y8/normal/local/bin/wheel to 755 2024-01-25T07:14:17,072 Successfully installed wheel-0.42.0 2024-01-25T07:14:17,331 [notice] A new release of pip is available: 23.3.1 -> 23.3.2 2024-01-25T07:14:17,331 [notice] To update, run: python3 -m pip install --upgrade pip 2024-01-25T07:14:17,559 Installing backend dependencies: finished with status 'done' 2024-01-25T07:14:17,560 Created temporary directory: /tmp/pip-modern-metadata-4ywbco1h 2024-01-25T07:14:17,563 Preparing metadata (pyproject.toml): started 2024-01-25T07:14:17,564 Running command Preparing metadata (pyproject.toml) 2024-01-25T07:14:18,364 running dist_info 2024-01-25T07:14:18,369 creating /tmp/pip-modern-metadata-4ywbco1h/witch_msa.egg-info 2024-01-25T07:14:18,372 writing /tmp/pip-modern-metadata-4ywbco1h/witch_msa.egg-info/PKG-INFO 2024-01-25T07:14:18,377 writing dependency_links to /tmp/pip-modern-metadata-4ywbco1h/witch_msa.egg-info/dependency_links.txt 2024-01-25T07:14:18,379 writing requirements to /tmp/pip-modern-metadata-4ywbco1h/witch_msa.egg-info/requires.txt 2024-01-25T07:14:18,380 writing top-level names to /tmp/pip-modern-metadata-4ywbco1h/witch_msa.egg-info/top_level.txt 2024-01-25T07:14:18,382 writing manifest file '/tmp/pip-modern-metadata-4ywbco1h/witch_msa.egg-info/SOURCES.txt' 2024-01-25T07:14:18,403 reading manifest file '/tmp/pip-modern-metadata-4ywbco1h/witch_msa.egg-info/SOURCES.txt' 2024-01-25T07:14:18,405 reading manifest template 'MANIFEST.in' 2024-01-25T07:14:18,432 no previously-included directories found matching '*/__pycache__' 2024-01-25T07:14:18,433 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2024-01-25T07:14:18,434 adding license file 'LICENSE' 2024-01-25T07:14:18,440 writing manifest file '/tmp/pip-modern-metadata-4ywbco1h/witch_msa.egg-info/SOURCES.txt' 2024-01-25T07:14:18,441 creating '/tmp/pip-modern-metadata-4ywbco1h/witch_msa-1.0.4.dist-info' 2024-01-25T07:14:18,595 Preparing metadata (pyproject.toml): finished with status 'done' 2024-01-25T07:14:18,608 Source in /tmp/pip-wheel-j5yfw8si/witch-msa_5cdb057ce94b4f87bf13aa05a89f8516 has version 1.0.4, which satisfies requirement witch-msa==1.0.4 from https://files.pythonhosted.org/packages/b3/66/f3d12c4255323801647f4b20b624a415db11e90ebcb83dfb6127e8df4074/witch-msa-1.0.4.tar.gz 2024-01-25T07:14:18,609 Removed witch-msa==1.0.4 from https://files.pythonhosted.org/packages/b3/66/f3d12c4255323801647f4b20b624a415db11e90ebcb83dfb6127e8df4074/witch-msa-1.0.4.tar.gz from build tracker '/tmp/pip-build-tracker-i235kr6a' 2024-01-25T07:14:18,629 Created temporary directory: /tmp/pip-unpack-cyeqsheo 2024-01-25T07:14:18,630 Created temporary directory: /tmp/pip-unpack-wvkrghqu 2024-01-25T07:14:18,657 Building wheels for collected packages: witch-msa 2024-01-25T07:14:18,661 Created temporary directory: /tmp/pip-wheel-n31rstpi 2024-01-25T07:14:18,662 Destination directory: /tmp/pip-wheel-n31rstpi 2024-01-25T07:14:18,664 Building wheel for witch-msa (pyproject.toml): started 2024-01-25T07:14:18,665 Running command Building wheel for witch-msa (pyproject.toml) 2024-01-25T07:14:19,416 running bdist_wheel 2024-01-25T07:14:19,432 running build 2024-01-25T07:14:19,432 running build_py 2024-01-25T07:14:19,436 creating build 2024-01-25T07:14:19,437 creating build/lib 2024-01-25T07:14:19,438 creating build/lib/witch_msa 2024-01-25T07:14:19,439 copying witch_msa/__init__.py -> build/lib/witch_msa 2024-01-25T07:14:19,441 copying witch_msa/init_configs.py -> build/lib/witch_msa 2024-01-25T07:14:19,443 copying witch_msa/configs.py -> build/lib/witch_msa 2024-01-25T07:14:19,446 creating build/lib/witch_msa/gcmm 2024-01-25T07:14:19,448 copying witch_msa/gcmm/results_handler.py -> build/lib/witch_msa/gcmm 2024-01-25T07:14:19,450 copying witch_msa/gcmm/algorithm.py -> build/lib/witch_msa/gcmm 2024-01-25T07:14:19,453 copying witch_msa/gcmm/__init__.py -> build/lib/witch_msa/gcmm 2024-01-25T07:14:19,454 copying witch_msa/gcmm/callback.py -> build/lib/witch_msa/gcmm 2024-01-25T07:14:19,456 copying witch_msa/gcmm/backbone.py -> build/lib/witch_msa/gcmm 2024-01-25T07:14:19,459 copying witch_msa/gcmm/gcmm.py -> build/lib/witch_msa/gcmm 2024-01-25T07:14:19,461 copying witch_msa/gcmm/loader.py -> build/lib/witch_msa/gcmm 2024-01-25T07:14:19,463 copying witch_msa/gcmm/aligner.py -> build/lib/witch_msa/gcmm 2024-01-25T07:14:19,466 copying witch_msa/gcmm/tree.py -> build/lib/witch_msa/gcmm 2024-01-25T07:14:19,468 copying witch_msa/gcmm/decompose_tree.py -> build/lib/witch_msa/gcmm 2024-01-25T07:14:19,470 copying witch_msa/gcmm/merger.py -> build/lib/witch_msa/gcmm 2024-01-25T07:14:19,472 copying witch_msa/gcmm/task.py -> build/lib/witch_msa/gcmm 2024-01-25T07:14:19,475 copying witch_msa/gcmm/weighting.py -> build/lib/witch_msa/gcmm 2024-01-25T07:14:19,478 creating build/lib/witch_msa/helpers 2024-01-25T07:14:19,479 copying witch_msa/helpers/pyhmmer_tools.py -> build/lib/witch_msa/helpers 2024-01-25T07:14:19,480 copying witch_msa/helpers/__init__.py -> build/lib/witch_msa/helpers 2024-01-25T07:14:19,482 copying witch_msa/helpers/math_utils.py -> build/lib/witch_msa/helpers 2024-01-25T07:14:19,483 copying witch_msa/helpers/alignment_tools.py -> build/lib/witch_msa/helpers 2024-01-25T07:14:19,486 copying witch_msa/helpers/general_tools.py -> build/lib/witch_msa/helpers 2024-01-25T07:14:19,488 running egg_info 2024-01-25T07:14:19,491 writing witch_msa.egg-info/PKG-INFO 2024-01-25T07:14:19,495 writing dependency_links to witch_msa.egg-info/dependency_links.txt 2024-01-25T07:14:19,496 writing requirements to witch_msa.egg-info/requires.txt 2024-01-25T07:14:19,497 writing top-level names to witch_msa.egg-info/top_level.txt 2024-01-25T07:14:19,506 reading manifest file 'witch_msa.egg-info/SOURCES.txt' 2024-01-25T07:14:19,512 reading manifest template 'MANIFEST.in' 2024-01-25T07:14:19,524 no previously-included directories found matching '*/__pycache__' 2024-01-25T07:14:19,526 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2024-01-25T07:14:19,526 adding license file 'LICENSE' 2024-01-25T07:14:19,534 writing manifest file 'witch_msa.egg-info/SOURCES.txt' 2024-01-25T07:14:19,537 /tmp/pip-build-env-gtem25y8/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'witch_msa.tools.macOS' is absent from the `packages` configuration. 2024-01-25T07:14:19,538 !! 2024-01-25T07:14:19,539 ******************************************************************************** 2024-01-25T07:14:19,539 ############################ 2024-01-25T07:14:19,540 # Package would be ignored # 2024-01-25T07:14:19,541 ############################ 2024-01-25T07:14:19,541 Python recognizes 'witch_msa.tools.macOS' as an importable package[^1], 2024-01-25T07:14:19,542 but it is absent from setuptools' `packages` configuration. 2024-01-25T07:14:19,544 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-25T07:14:19,544 package, please make sure that 'witch_msa.tools.macOS' is explicitly added 2024-01-25T07:14:19,545 to the `packages` configuration field. 2024-01-25T07:14:19,546 Alternatively, you can also rely on setuptools' discovery methods 2024-01-25T07:14:19,547 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-25T07:14:19,547 instead of `find_packages(...)`/`find:`). 2024-01-25T07:14:19,549 You can read more about "package discovery" on setuptools documentation page: 2024-01-25T07:14:19,550 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-25T07:14:19,551 If you don't want 'witch_msa.tools.macOS' to be distributed and are 2024-01-25T07:14:19,552 already explicitly excluding 'witch_msa.tools.macOS' via 2024-01-25T07:14:19,552 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-25T07:14:19,553 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-25T07:14:19,553 combination with a more fine grained `package-data` configuration. 2024-01-25T07:14:19,554 You can read more about "package data files" on setuptools documentation page: 2024-01-25T07:14:19,556 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-25T07:14:19,557 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-25T07:14:19,558 even if it does not contain any `.py` files. 2024-01-25T07:14:19,559 On the other hand, currently there is no concept of package data 2024-01-25T07:14:19,559 directory, all directories are treated like packages. 2024-01-25T07:14:19,560 ******************************************************************************** 2024-01-25T07:14:19,562 !! 2024-01-25T07:14:19,562 check.warn(importable) 2024-01-25T07:14:19,562 /tmp/pip-build-env-gtem25y8/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'witch_msa.tools.magus' is absent from the `packages` configuration. 2024-01-25T07:14:19,563 !! 2024-01-25T07:14:19,564 ******************************************************************************** 2024-01-25T07:14:19,564 ############################ 2024-01-25T07:14:19,564 # Package would be ignored # 2024-01-25T07:14:19,565 ############################ 2024-01-25T07:14:19,565 Python recognizes 'witch_msa.tools.magus' as an importable package[^1], 2024-01-25T07:14:19,566 but it is absent from setuptools' `packages` configuration. 2024-01-25T07:14:19,566 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-25T07:14:19,567 package, please make sure that 'witch_msa.tools.magus' is explicitly added 2024-01-25T07:14:19,567 to the `packages` configuration field. 2024-01-25T07:14:19,568 Alternatively, you can also rely on setuptools' discovery methods 2024-01-25T07:14:19,569 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-25T07:14:19,569 instead of `find_packages(...)`/`find:`). 2024-01-25T07:14:19,570 You can read more about "package discovery" on setuptools documentation page: 2024-01-25T07:14:19,571 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-25T07:14:19,572 If you don't want 'witch_msa.tools.magus' to be distributed and are 2024-01-25T07:14:19,572 already explicitly excluding 'witch_msa.tools.magus' via 2024-01-25T07:14:19,573 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-25T07:14:19,573 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-25T07:14:19,574 combination with a more fine grained `package-data` configuration. 2024-01-25T07:14:19,575 You can read more about "package data files" on setuptools documentation page: 2024-01-25T07:14:19,577 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-25T07:14:19,578 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-25T07:14:19,579 even if it does not contain any `.py` files. 2024-01-25T07:14:19,580 On the other hand, currently there is no concept of package data 2024-01-25T07:14:19,580 directory, all directories are treated like packages. 2024-01-25T07:14:19,581 ******************************************************************************** 2024-01-25T07:14:19,582 !! 2024-01-25T07:14:19,583 check.warn(importable) 2024-01-25T07:14:19,583 /tmp/pip-build-env-gtem25y8/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'witch_msa.tools.magus.align' is absent from the `packages` configuration. 2024-01-25T07:14:19,584 !! 2024-01-25T07:14:19,585 ******************************************************************************** 2024-01-25T07:14:19,585 ############################ 2024-01-25T07:14:19,586 # Package would be ignored # 2024-01-25T07:14:19,586 ############################ 2024-01-25T07:14:19,587 Python recognizes 'witch_msa.tools.magus.align' as an importable package[^1], 2024-01-25T07:14:19,587 but it is absent from setuptools' `packages` configuration. 2024-01-25T07:14:19,589 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-25T07:14:19,589 package, please make sure that 'witch_msa.tools.magus.align' is explicitly added 2024-01-25T07:14:19,592 to the `packages` configuration field. 2024-01-25T07:14:19,594 Alternatively, you can also rely on setuptools' discovery methods 2024-01-25T07:14:19,595 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-25T07:14:19,595 instead of `find_packages(...)`/`find:`). 2024-01-25T07:14:19,596 You can read more about "package discovery" on setuptools documentation page: 2024-01-25T07:14:19,597 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-25T07:14:19,598 If you don't want 'witch_msa.tools.magus.align' to be distributed and are 2024-01-25T07:14:19,598 already explicitly excluding 'witch_msa.tools.magus.align' via 2024-01-25T07:14:19,599 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-25T07:14:19,601 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-25T07:14:19,606 combination with a more fine grained `package-data` configuration. 2024-01-25T07:14:19,608 You can read more about "package data files" on setuptools documentation page: 2024-01-25T07:14:19,609 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-25T07:14:19,610 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-25T07:14:19,611 even if it does not contain any `.py` files. 2024-01-25T07:14:19,611 On the other hand, currently there is no concept of package data 2024-01-25T07:14:19,612 directory, all directories are treated like packages. 2024-01-25T07:14:19,612 ******************************************************************************** 2024-01-25T07:14:19,618 !! 2024-01-25T07:14:19,621 check.warn(importable) 2024-01-25T07:14:19,622 /tmp/pip-build-env-gtem25y8/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'witch_msa.tools.magus.align.decompose' is absent from the `packages` configuration. 2024-01-25T07:14:19,623 !! 2024-01-25T07:14:19,624 ******************************************************************************** 2024-01-25T07:14:19,624 ############################ 2024-01-25T07:14:19,629 # Package would be ignored # 2024-01-25T07:14:19,633 ############################ 2024-01-25T07:14:19,638 Python recognizes 'witch_msa.tools.magus.align.decompose' as an importable package[^1], 2024-01-25T07:14:19,639 but it is absent from setuptools' `packages` configuration. 2024-01-25T07:14:19,640 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-25T07:14:19,641 package, please make sure that 'witch_msa.tools.magus.align.decompose' is explicitly added 2024-01-25T07:14:19,641 to the `packages` configuration field. 2024-01-25T07:14:19,643 Alternatively, you can also rely on setuptools' discovery methods 2024-01-25T07:14:19,644 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-25T07:14:19,644 instead of `find_packages(...)`/`find:`). 2024-01-25T07:14:19,645 You can read more about "package discovery" on setuptools documentation page: 2024-01-25T07:14:19,646 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-25T07:14:19,648 If you don't want 'witch_msa.tools.magus.align.decompose' to be distributed and are 2024-01-25T07:14:19,651 already explicitly excluding 'witch_msa.tools.magus.align.decompose' via 2024-01-25T07:14:19,652 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-25T07:14:19,653 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-25T07:14:19,653 combination with a more fine grained `package-data` configuration. 2024-01-25T07:14:19,654 You can read more about "package data files" on setuptools documentation page: 2024-01-25T07:14:19,656 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-25T07:14:19,657 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-25T07:14:19,657 even if it does not contain any `.py` files. 2024-01-25T07:14:19,658 On the other hand, currently there is no concept of package data 2024-01-25T07:14:19,658 directory, all directories are treated like packages. 2024-01-25T07:14:19,659 ******************************************************************************** 2024-01-25T07:14:19,659 !! 2024-01-25T07:14:19,660 check.warn(importable) 2024-01-25T07:14:19,660 /tmp/pip-build-env-gtem25y8/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'witch_msa.tools.magus.align.merge' is absent from the `packages` configuration. 2024-01-25T07:14:19,661 !! 2024-01-25T07:14:19,662 ******************************************************************************** 2024-01-25T07:14:19,662 ############################ 2024-01-25T07:14:19,662 # Package would be ignored # 2024-01-25T07:14:19,663 ############################ 2024-01-25T07:14:19,663 Python recognizes 'witch_msa.tools.magus.align.merge' as an importable package[^1], 2024-01-25T07:14:19,664 but it is absent from setuptools' `packages` configuration. 2024-01-25T07:14:19,664 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-25T07:14:19,665 package, please make sure that 'witch_msa.tools.magus.align.merge' is explicitly added 2024-01-25T07:14:19,665 to the `packages` configuration field. 2024-01-25T07:14:19,666 Alternatively, you can also rely on setuptools' discovery methods 2024-01-25T07:14:19,666 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-25T07:14:19,667 instead of `find_packages(...)`/`find:`). 2024-01-25T07:14:19,668 You can read more about "package discovery" on setuptools documentation page: 2024-01-25T07:14:19,669 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-25T07:14:19,670 If you don't want 'witch_msa.tools.magus.align.merge' to be distributed and are 2024-01-25T07:14:19,670 already explicitly excluding 'witch_msa.tools.magus.align.merge' via 2024-01-25T07:14:19,671 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-25T07:14:19,671 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-25T07:14:19,672 combination with a more fine grained `package-data` configuration. 2024-01-25T07:14:19,673 You can read more about "package data files" on setuptools documentation page: 2024-01-25T07:14:19,674 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-25T07:14:19,675 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-25T07:14:19,676 even if it does not contain any `.py` files. 2024-01-25T07:14:19,676 On the other hand, currently there is no concept of package data 2024-01-25T07:14:19,677 directory, all directories are treated like packages. 2024-01-25T07:14:19,677 ******************************************************************************** 2024-01-25T07:14:19,678 !! 2024-01-25T07:14:19,679 check.warn(importable) 2024-01-25T07:14:19,679 /tmp/pip-build-env-gtem25y8/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'witch_msa.tools.magus.align.merge.graph_build' is absent from the `packages` configuration. 2024-01-25T07:14:19,680 !! 2024-01-25T07:14:19,681 ******************************************************************************** 2024-01-25T07:14:19,681 ############################ 2024-01-25T07:14:19,682 # Package would be ignored # 2024-01-25T07:14:19,682 ############################ 2024-01-25T07:14:19,683 Python recognizes 'witch_msa.tools.magus.align.merge.graph_build' as an importable package[^1], 2024-01-25T07:14:19,683 but it is absent from setuptools' `packages` configuration. 2024-01-25T07:14:19,684 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-25T07:14:19,684 package, please make sure that 'witch_msa.tools.magus.align.merge.graph_build' is explicitly added 2024-01-25T07:14:19,685 to the `packages` configuration field. 2024-01-25T07:14:19,685 Alternatively, you can also rely on setuptools' discovery methods 2024-01-25T07:14:19,686 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-25T07:14:19,686 instead of `find_packages(...)`/`find:`). 2024-01-25T07:14:19,687 You can read more about "package discovery" on setuptools documentation page: 2024-01-25T07:14:19,688 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-25T07:14:19,689 If you don't want 'witch_msa.tools.magus.align.merge.graph_build' to be distributed and are 2024-01-25T07:14:19,689 already explicitly excluding 'witch_msa.tools.magus.align.merge.graph_build' via 2024-01-25T07:14:19,690 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-25T07:14:19,690 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-25T07:14:19,691 combination with a more fine grained `package-data` configuration. 2024-01-25T07:14:19,691 You can read more about "package data files" on setuptools documentation page: 2024-01-25T07:14:19,692 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-25T07:14:19,694 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-25T07:14:19,694 even if it does not contain any `.py` files. 2024-01-25T07:14:19,695 On the other hand, currently there is no concept of package data 2024-01-25T07:14:19,695 directory, all directories are treated like packages. 2024-01-25T07:14:19,695 ******************************************************************************** 2024-01-25T07:14:19,696 !! 2024-01-25T07:14:19,697 check.warn(importable) 2024-01-25T07:14:19,697 /tmp/pip-build-env-gtem25y8/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'witch_msa.tools.magus.align.merge.graph_cluster' is absent from the `packages` configuration. 2024-01-25T07:14:19,698 !! 2024-01-25T07:14:19,699 ******************************************************************************** 2024-01-25T07:14:19,699 ############################ 2024-01-25T07:14:19,700 # Package would be ignored # 2024-01-25T07:14:19,700 ############################ 2024-01-25T07:14:19,701 Python recognizes 'witch_msa.tools.magus.align.merge.graph_cluster' as an importable package[^1], 2024-01-25T07:14:19,701 but it is absent from setuptools' `packages` configuration. 2024-01-25T07:14:19,702 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-25T07:14:19,703 package, please make sure that 'witch_msa.tools.magus.align.merge.graph_cluster' is explicitly added 2024-01-25T07:14:19,703 to the `packages` configuration field. 2024-01-25T07:14:19,704 Alternatively, you can also rely on setuptools' discovery methods 2024-01-25T07:14:19,705 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-25T07:14:19,705 instead of `find_packages(...)`/`find:`). 2024-01-25T07:14:19,706 You can read more about "package discovery" on setuptools documentation page: 2024-01-25T07:14:19,707 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-25T07:14:19,708 If you don't want 'witch_msa.tools.magus.align.merge.graph_cluster' to be distributed and are 2024-01-25T07:14:19,709 already explicitly excluding 'witch_msa.tools.magus.align.merge.graph_cluster' via 2024-01-25T07:14:19,709 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-25T07:14:19,709 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-25T07:14:19,710 combination with a more fine grained `package-data` configuration. 2024-01-25T07:14:19,711 You can read more about "package data files" on setuptools documentation page: 2024-01-25T07:14:19,711 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-25T07:14:19,712 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-25T07:14:19,713 even if it does not contain any `.py` files. 2024-01-25T07:14:19,713 On the other hand, currently there is no concept of package data 2024-01-25T07:14:19,714 directory, all directories are treated like packages. 2024-01-25T07:14:19,714 ******************************************************************************** 2024-01-25T07:14:19,715 !! 2024-01-25T07:14:19,715 check.warn(importable) 2024-01-25T07:14:19,716 /tmp/pip-build-env-gtem25y8/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'witch_msa.tools.magus.align.merge.graph_trace' is absent from the `packages` configuration. 2024-01-25T07:14:19,716 !! 2024-01-25T07:14:19,717 ******************************************************************************** 2024-01-25T07:14:19,717 ############################ 2024-01-25T07:14:19,718 # Package would be ignored # 2024-01-25T07:14:19,718 ############################ 2024-01-25T07:14:19,719 Python recognizes 'witch_msa.tools.magus.align.merge.graph_trace' as an importable package[^1], 2024-01-25T07:14:19,719 but it is absent from setuptools' `packages` configuration. 2024-01-25T07:14:19,720 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-25T07:14:19,721 package, please make sure that 'witch_msa.tools.magus.align.merge.graph_trace' is explicitly added 2024-01-25T07:14:19,721 to the `packages` configuration field. 2024-01-25T07:14:19,722 Alternatively, you can also rely on setuptools' discovery methods 2024-01-25T07:14:19,722 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-25T07:14:19,723 instead of `find_packages(...)`/`find:`). 2024-01-25T07:14:19,724 You can read more about "package discovery" on setuptools documentation page: 2024-01-25T07:14:19,725 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-25T07:14:19,726 If you don't want 'witch_msa.tools.magus.align.merge.graph_trace' to be distributed and are 2024-01-25T07:14:19,727 already explicitly excluding 'witch_msa.tools.magus.align.merge.graph_trace' via 2024-01-25T07:14:19,727 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-25T07:14:19,728 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-25T07:14:19,728 combination with a more fine grained `package-data` configuration. 2024-01-25T07:14:19,729 You can read more about "package data files" on setuptools documentation page: 2024-01-25T07:14:19,730 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-25T07:14:19,732 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-25T07:14:19,732 even if it does not contain any `.py` files. 2024-01-25T07:14:19,733 On the other hand, currently there is no concept of package data 2024-01-25T07:14:19,734 directory, all directories are treated like packages. 2024-01-25T07:14:19,734 ******************************************************************************** 2024-01-25T07:14:19,735 !! 2024-01-25T07:14:19,736 check.warn(importable) 2024-01-25T07:14:19,736 /tmp/pip-build-env-gtem25y8/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'witch_msa.tools.magus.helpers' is absent from the `packages` configuration. 2024-01-25T07:14:19,737 !! 2024-01-25T07:14:19,738 ******************************************************************************** 2024-01-25T07:14:19,738 ############################ 2024-01-25T07:14:19,739 # Package would be ignored # 2024-01-25T07:14:19,740 ############################ 2024-01-25T07:14:19,740 Python recognizes 'witch_msa.tools.magus.helpers' as an importable package[^1], 2024-01-25T07:14:19,741 but it is absent from setuptools' `packages` configuration. 2024-01-25T07:14:19,742 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-25T07:14:19,742 package, please make sure that 'witch_msa.tools.magus.helpers' is explicitly added 2024-01-25T07:14:19,742 to the `packages` configuration field. 2024-01-25T07:14:19,743 Alternatively, you can also rely on setuptools' discovery methods 2024-01-25T07:14:19,744 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-25T07:14:19,744 instead of `find_packages(...)`/`find:`). 2024-01-25T07:14:19,745 You can read more about "package discovery" on setuptools documentation page: 2024-01-25T07:14:19,746 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-25T07:14:19,747 If you don't want 'witch_msa.tools.magus.helpers' to be distributed and are 2024-01-25T07:14:19,748 already explicitly excluding 'witch_msa.tools.magus.helpers' via 2024-01-25T07:14:19,748 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-25T07:14:19,749 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-25T07:14:19,749 combination with a more fine grained `package-data` configuration. 2024-01-25T07:14:19,750 You can read more about "package data files" on setuptools documentation page: 2024-01-25T07:14:19,751 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-25T07:14:19,752 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-25T07:14:19,753 even if it does not contain any `.py` files. 2024-01-25T07:14:19,753 On the other hand, currently there is no concept of package data 2024-01-25T07:14:19,754 directory, all directories are treated like packages. 2024-01-25T07:14:19,754 ******************************************************************************** 2024-01-25T07:14:19,755 !! 2024-01-25T07:14:19,756 check.warn(importable) 2024-01-25T07:14:19,756 /tmp/pip-build-env-gtem25y8/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'witch_msa.tools.magus.tasks' is absent from the `packages` configuration. 2024-01-25T07:14:19,757 !! 2024-01-25T07:14:19,758 ******************************************************************************** 2024-01-25T07:14:19,758 ############################ 2024-01-25T07:14:19,759 # Package would be ignored # 2024-01-25T07:14:19,759 ############################ 2024-01-25T07:14:19,760 Python recognizes 'witch_msa.tools.magus.tasks' as an importable package[^1], 2024-01-25T07:14:19,760 but it is absent from setuptools' `packages` configuration. 2024-01-25T07:14:19,761 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-25T07:14:19,762 package, please make sure that 'witch_msa.tools.magus.tasks' is explicitly added 2024-01-25T07:14:19,762 to the `packages` configuration field. 2024-01-25T07:14:19,763 Alternatively, you can also rely on setuptools' discovery methods 2024-01-25T07:14:19,764 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-25T07:14:19,764 instead of `find_packages(...)`/`find:`). 2024-01-25T07:14:19,765 You can read more about "package discovery" on setuptools documentation page: 2024-01-25T07:14:19,765 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-25T07:14:19,766 If you don't want 'witch_msa.tools.magus.tasks' to be distributed and are 2024-01-25T07:14:19,767 already explicitly excluding 'witch_msa.tools.magus.tasks' via 2024-01-25T07:14:19,767 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-25T07:14:19,768 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-25T07:14:19,768 combination with a more fine grained `package-data` configuration. 2024-01-25T07:14:19,769 You can read more about "package data files" on setuptools documentation page: 2024-01-25T07:14:19,770 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-25T07:14:19,771 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-25T07:14:19,771 even if it does not contain any `.py` files. 2024-01-25T07:14:19,772 On the other hand, currently there is no concept of package data 2024-01-25T07:14:19,772 directory, all directories are treated like packages. 2024-01-25T07:14:19,773 ******************************************************************************** 2024-01-25T07:14:19,774 !! 2024-01-25T07:14:19,774 check.warn(importable) 2024-01-25T07:14:19,775 /tmp/pip-build-env-gtem25y8/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'witch_msa.tools.magus.tools' is absent from the `packages` configuration. 2024-01-25T07:14:19,775 !! 2024-01-25T07:14:19,776 ******************************************************************************** 2024-01-25T07:14:19,777 ############################ 2024-01-25T07:14:19,777 # Package would be ignored # 2024-01-25T07:14:19,777 ############################ 2024-01-25T07:14:19,778 Python recognizes 'witch_msa.tools.magus.tools' as an importable package[^1], 2024-01-25T07:14:19,779 but it is absent from setuptools' `packages` configuration. 2024-01-25T07:14:19,780 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-25T07:14:19,780 package, please make sure that 'witch_msa.tools.magus.tools' is explicitly added 2024-01-25T07:14:19,781 to the `packages` configuration field. 2024-01-25T07:14:19,782 Alternatively, you can also rely on setuptools' discovery methods 2024-01-25T07:14:19,783 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-25T07:14:19,783 instead of `find_packages(...)`/`find:`). 2024-01-25T07:14:19,784 You can read more about "package discovery" on setuptools documentation page: 2024-01-25T07:14:19,786 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-25T07:14:19,787 If you don't want 'witch_msa.tools.magus.tools' to be distributed and are 2024-01-25T07:14:19,787 already explicitly excluding 'witch_msa.tools.magus.tools' via 2024-01-25T07:14:19,788 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-25T07:14:19,789 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-25T07:14:19,789 combination with a more fine grained `package-data` configuration. 2024-01-25T07:14:19,791 You can read more about "package data files" on setuptools documentation page: 2024-01-25T07:14:19,792 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-25T07:14:19,793 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-25T07:14:19,794 even if it does not contain any `.py` files. 2024-01-25T07:14:19,794 On the other hand, currently there is no concept of package data 2024-01-25T07:14:19,794 directory, all directories are treated like packages. 2024-01-25T07:14:19,795 ******************************************************************************** 2024-01-25T07:14:19,796 !! 2024-01-25T07:14:19,796 check.warn(importable) 2024-01-25T07:14:19,797 /tmp/pip-build-env-gtem25y8/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'witch_msa.tools.magus.tools.clustal' is absent from the `packages` configuration. 2024-01-25T07:14:19,797 !! 2024-01-25T07:14:19,798 ******************************************************************************** 2024-01-25T07:14:19,798 ############################ 2024-01-25T07:14:19,799 # Package would be ignored # 2024-01-25T07:14:19,799 ############################ 2024-01-25T07:14:19,800 Python recognizes 'witch_msa.tools.magus.tools.clustal' as an importable package[^1], 2024-01-25T07:14:19,800 but it is absent from setuptools' `packages` configuration. 2024-01-25T07:14:19,801 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-25T07:14:19,802 package, please make sure that 'witch_msa.tools.magus.tools.clustal' is explicitly added 2024-01-25T07:14:19,803 to the `packages` configuration field. 2024-01-25T07:14:19,804 Alternatively, you can also rely on setuptools' discovery methods 2024-01-25T07:14:19,805 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-25T07:14:19,806 instead of `find_packages(...)`/`find:`). 2024-01-25T07:14:19,807 You can read more about "package discovery" on setuptools documentation page: 2024-01-25T07:14:19,808 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-25T07:14:19,810 If you don't want 'witch_msa.tools.magus.tools.clustal' to be distributed and are 2024-01-25T07:14:19,810 already explicitly excluding 'witch_msa.tools.magus.tools.clustal' via 2024-01-25T07:14:19,811 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-25T07:14:19,811 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-25T07:14:19,812 combination with a more fine grained `package-data` configuration. 2024-01-25T07:14:19,813 You can read more about "package data files" on setuptools documentation page: 2024-01-25T07:14:19,814 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-25T07:14:19,816 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-25T07:14:19,816 even if it does not contain any `.py` files. 2024-01-25T07:14:19,817 On the other hand, currently there is no concept of package data 2024-01-25T07:14:19,817 directory, all directories are treated like packages. 2024-01-25T07:14:19,818 ******************************************************************************** 2024-01-25T07:14:19,819 !! 2024-01-25T07:14:19,820 check.warn(importable) 2024-01-25T07:14:19,820 /tmp/pip-build-env-gtem25y8/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'witch_msa.tools.magus.tools.fasttree' is absent from the `packages` configuration. 2024-01-25T07:14:19,821 !! 2024-01-25T07:14:19,822 ******************************************************************************** 2024-01-25T07:14:19,823 ############################ 2024-01-25T07:14:19,824 # Package would be ignored # 2024-01-25T07:14:19,824 ############################ 2024-01-25T07:14:19,825 Python recognizes 'witch_msa.tools.magus.tools.fasttree' as an importable package[^1], 2024-01-25T07:14:19,825 but it is absent from setuptools' `packages` configuration. 2024-01-25T07:14:19,826 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-25T07:14:19,827 package, please make sure that 'witch_msa.tools.magus.tools.fasttree' is explicitly added 2024-01-25T07:14:19,831 to the `packages` configuration field. 2024-01-25T07:14:19,862 Alternatively, you can also rely on setuptools' discovery methods 2024-01-25T07:14:19,871 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-25T07:14:19,874 instead of `find_packages(...)`/`find:`). 2024-01-25T07:14:19,874 You can read more about "package discovery" on setuptools documentation page: 2024-01-25T07:14:19,875 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-25T07:14:19,876 If you don't want 'witch_msa.tools.magus.tools.fasttree' to be distributed and are 2024-01-25T07:14:19,876 already explicitly excluding 'witch_msa.tools.magus.tools.fasttree' via 2024-01-25T07:14:19,877 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-25T07:14:19,877 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-25T07:14:19,878 combination with a more fine grained `package-data` configuration. 2024-01-25T07:14:19,879 You can read more about "package data files" on setuptools documentation page: 2024-01-25T07:14:19,882 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-25T07:14:19,885 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-25T07:14:19,885 even if it does not contain any `.py` files. 2024-01-25T07:14:19,886 On the other hand, currently there is no concept of package data 2024-01-25T07:14:19,889 directory, all directories are treated like packages. 2024-01-25T07:14:19,890 ******************************************************************************** 2024-01-25T07:14:19,893 !! 2024-01-25T07:14:19,893 check.warn(importable) 2024-01-25T07:14:19,894 /tmp/pip-build-env-gtem25y8/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'witch_msa.tools.magus.tools.hmmer' is absent from the `packages` configuration. 2024-01-25T07:14:19,894 !! 2024-01-25T07:14:19,895 ******************************************************************************** 2024-01-25T07:14:19,896 ############################ 2024-01-25T07:14:19,896 # Package would be ignored # 2024-01-25T07:14:19,897 ############################ 2024-01-25T07:14:19,897 Python recognizes 'witch_msa.tools.magus.tools.hmmer' as an importable package[^1], 2024-01-25T07:14:19,898 but it is absent from setuptools' `packages` configuration. 2024-01-25T07:14:19,899 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-25T07:14:19,900 package, please make sure that 'witch_msa.tools.magus.tools.hmmer' is explicitly added 2024-01-25T07:14:19,900 to the `packages` configuration field. 2024-01-25T07:14:19,902 Alternatively, you can also rely on setuptools' discovery methods 2024-01-25T07:14:19,902 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-25T07:14:19,903 instead of `find_packages(...)`/`find:`). 2024-01-25T07:14:19,912 You can read more about "package discovery" on setuptools documentation page: 2024-01-25T07:14:19,917 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-25T07:14:19,918 If you don't want 'witch_msa.tools.magus.tools.hmmer' to be distributed and are 2024-01-25T07:14:19,918 already explicitly excluding 'witch_msa.tools.magus.tools.hmmer' via 2024-01-25T07:14:19,919 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-25T07:14:19,927 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-25T07:14:19,933 combination with a more fine grained `package-data` configuration. 2024-01-25T07:14:19,938 You can read more about "package data files" on setuptools documentation page: 2024-01-25T07:14:19,939 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-25T07:14:19,941 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-25T07:14:19,941 even if it does not contain any `.py` files. 2024-01-25T07:14:19,941 On the other hand, currently there is no concept of package data 2024-01-25T07:14:19,942 directory, all directories are treated like packages. 2024-01-25T07:14:19,942 ******************************************************************************** 2024-01-25T07:14:19,943 !! 2024-01-25T07:14:19,944 check.warn(importable) 2024-01-25T07:14:19,944 /tmp/pip-build-env-gtem25y8/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'witch_msa.tools.magus.tools.mafft' is absent from the `packages` configuration. 2024-01-25T07:14:19,945 !! 2024-01-25T07:14:19,946 ******************************************************************************** 2024-01-25T07:14:19,946 ############################ 2024-01-25T07:14:19,947 # Package would be ignored # 2024-01-25T07:14:19,948 ############################ 2024-01-25T07:14:19,950 Python recognizes 'witch_msa.tools.magus.tools.mafft' as an importable package[^1], 2024-01-25T07:14:19,951 but it is absent from setuptools' `packages` configuration. 2024-01-25T07:14:19,958 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-25T07:14:19,959 package, please make sure that 'witch_msa.tools.magus.tools.mafft' is explicitly added 2024-01-25T07:14:19,960 to the `packages` configuration field. 2024-01-25T07:14:19,964 Alternatively, you can also rely on setuptools' discovery methods 2024-01-25T07:14:19,964 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-25T07:14:19,965 instead of `find_packages(...)`/`find:`). 2024-01-25T07:14:19,966 You can read more about "package discovery" on setuptools documentation page: 2024-01-25T07:14:19,967 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-25T07:14:19,968 If you don't want 'witch_msa.tools.magus.tools.mafft' to be distributed and are 2024-01-25T07:14:19,968 already explicitly excluding 'witch_msa.tools.magus.tools.mafft' via 2024-01-25T07:14:19,969 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-25T07:14:19,969 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-25T07:14:19,970 combination with a more fine grained `package-data` configuration. 2024-01-25T07:14:19,971 You can read more about "package data files" on setuptools documentation page: 2024-01-25T07:14:19,972 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-25T07:14:19,975 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-25T07:14:19,975 even if it does not contain any `.py` files. 2024-01-25T07:14:19,976 On the other hand, currently there is no concept of package data 2024-01-25T07:14:19,977 directory, all directories are treated like packages. 2024-01-25T07:14:19,977 ******************************************************************************** 2024-01-25T07:14:19,978 !! 2024-01-25T07:14:19,979 check.warn(importable) 2024-01-25T07:14:19,979 /tmp/pip-build-env-gtem25y8/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'witch_msa.tools.magus.tools.mafft.mafftdir.bin' is absent from the `packages` configuration. 2024-01-25T07:14:19,980 !! 2024-01-25T07:14:19,981 ******************************************************************************** 2024-01-25T07:14:19,981 ############################ 2024-01-25T07:14:19,982 # Package would be ignored # 2024-01-25T07:14:19,982 ############################ 2024-01-25T07:14:19,983 Python recognizes 'witch_msa.tools.magus.tools.mafft.mafftdir.bin' as an importable package[^1], 2024-01-25T07:14:19,983 but it is absent from setuptools' `packages` configuration. 2024-01-25T07:14:19,984 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-25T07:14:19,987 package, please make sure that 'witch_msa.tools.magus.tools.mafft.mafftdir.bin' is explicitly added 2024-01-25T07:14:19,997 to the `packages` configuration field. 2024-01-25T07:14:20,003 Alternatively, you can also rely on setuptools' discovery methods 2024-01-25T07:14:20,003 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-25T07:14:20,004 instead of `find_packages(...)`/`find:`). 2024-01-25T07:14:20,005 You can read more about "package discovery" on setuptools documentation page: 2024-01-25T07:14:20,006 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-25T07:14:20,007 If you don't want 'witch_msa.tools.magus.tools.mafft.mafftdir.bin' to be distributed and are 2024-01-25T07:14:20,008 already explicitly excluding 'witch_msa.tools.magus.tools.mafft.mafftdir.bin' via 2024-01-25T07:14:20,008 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-25T07:14:20,009 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-25T07:14:20,010 combination with a more fine grained `package-data` configuration. 2024-01-25T07:14:20,011 You can read more about "package data files" on setuptools documentation page: 2024-01-25T07:14:20,017 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-25T07:14:20,020 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-25T07:14:20,021 even if it does not contain any `.py` files. 2024-01-25T07:14:20,021 On the other hand, currently there is no concept of package data 2024-01-25T07:14:20,022 directory, all directories are treated like packages. 2024-01-25T07:14:20,026 ******************************************************************************** 2024-01-25T07:14:20,029 !! 2024-01-25T07:14:20,032 check.warn(importable) 2024-01-25T07:14:20,033 /tmp/pip-build-env-gtem25y8/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'witch_msa.tools.magus.tools.mafft.mafftdir.libexec' is absent from the `packages` configuration. 2024-01-25T07:14:20,033 !! 2024-01-25T07:14:20,034 ******************************************************************************** 2024-01-25T07:14:20,035 ############################ 2024-01-25T07:14:20,036 # Package would be ignored # 2024-01-25T07:14:20,039 ############################ 2024-01-25T07:14:20,039 Python recognizes 'witch_msa.tools.magus.tools.mafft.mafftdir.libexec' as an importable package[^1], 2024-01-25T07:14:20,040 but it is absent from setuptools' `packages` configuration. 2024-01-25T07:14:20,041 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-25T07:14:20,042 package, please make sure that 'witch_msa.tools.magus.tools.mafft.mafftdir.libexec' is explicitly added 2024-01-25T07:14:20,043 to the `packages` configuration field. 2024-01-25T07:14:20,043 Alternatively, you can also rely on setuptools' discovery methods 2024-01-25T07:14:20,044 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-25T07:14:20,044 instead of `find_packages(...)`/`find:`). 2024-01-25T07:14:20,045 You can read more about "package discovery" on setuptools documentation page: 2024-01-25T07:14:20,046 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-25T07:14:20,050 If you don't want 'witch_msa.tools.magus.tools.mafft.mafftdir.libexec' to be distributed and are 2024-01-25T07:14:20,051 already explicitly excluding 'witch_msa.tools.magus.tools.mafft.mafftdir.libexec' via 2024-01-25T07:14:20,051 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-25T07:14:20,052 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-25T07:14:20,052 combination with a more fine grained `package-data` configuration. 2024-01-25T07:14:20,053 You can read more about "package data files" on setuptools documentation page: 2024-01-25T07:14:20,054 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-25T07:14:20,098 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-25T07:14:20,100 even if it does not contain any `.py` files. 2024-01-25T07:14:20,101 On the other hand, currently there is no concept of package data 2024-01-25T07:14:20,101 directory, all directories are treated like packages. 2024-01-25T07:14:20,102 ******************************************************************************** 2024-01-25T07:14:20,103 !! 2024-01-25T07:14:20,103 check.warn(importable) 2024-01-25T07:14:20,104 /tmp/pip-build-env-gtem25y8/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'witch_msa.tools.magus.tools.mcl.bin' is absent from the `packages` configuration. 2024-01-25T07:14:20,105 !! 2024-01-25T07:14:20,106 ******************************************************************************** 2024-01-25T07:14:20,107 ############################ 2024-01-25T07:14:20,107 # Package would be ignored # 2024-01-25T07:14:20,108 ############################ 2024-01-25T07:14:20,110 Python recognizes 'witch_msa.tools.magus.tools.mcl.bin' as an importable package[^1], 2024-01-25T07:14:20,114 but it is absent from setuptools' `packages` configuration. 2024-01-25T07:14:20,121 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-25T07:14:20,122 package, please make sure that 'witch_msa.tools.magus.tools.mcl.bin' is explicitly added 2024-01-25T07:14:20,122 to the `packages` configuration field. 2024-01-25T07:14:20,124 Alternatively, you can also rely on setuptools' discovery methods 2024-01-25T07:14:20,130 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-25T07:14:20,131 instead of `find_packages(...)`/`find:`). 2024-01-25T07:14:20,135 You can read more about "package discovery" on setuptools documentation page: 2024-01-25T07:14:20,138 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-25T07:14:20,139 If you don't want 'witch_msa.tools.magus.tools.mcl.bin' to be distributed and are 2024-01-25T07:14:20,140 already explicitly excluding 'witch_msa.tools.magus.tools.mcl.bin' via 2024-01-25T07:14:20,141 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-25T07:14:20,141 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-25T07:14:20,142 combination with a more fine grained `package-data` configuration. 2024-01-25T07:14:20,143 You can read more about "package data files" on setuptools documentation page: 2024-01-25T07:14:20,144 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-25T07:14:20,153 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-25T07:14:20,154 even if it does not contain any `.py` files. 2024-01-25T07:14:20,155 On the other hand, currently there is no concept of package data 2024-01-25T07:14:20,155 directory, all directories are treated like packages. 2024-01-25T07:14:20,156 ******************************************************************************** 2024-01-25T07:14:20,157 !! 2024-01-25T07:14:20,157 check.warn(importable) 2024-01-25T07:14:20,157 /tmp/pip-build-env-gtem25y8/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'witch_msa.tools.magus.tools.mlrmcl' is absent from the `packages` configuration. 2024-01-25T07:14:20,158 !! 2024-01-25T07:14:20,159 ******************************************************************************** 2024-01-25T07:14:20,159 ############################ 2024-01-25T07:14:20,160 # Package would be ignored # 2024-01-25T07:14:20,160 ############################ 2024-01-25T07:14:20,161 Python recognizes 'witch_msa.tools.magus.tools.mlrmcl' as an importable package[^1], 2024-01-25T07:14:20,161 but it is absent from setuptools' `packages` configuration. 2024-01-25T07:14:20,163 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-25T07:14:20,165 package, please make sure that 'witch_msa.tools.magus.tools.mlrmcl' is explicitly added 2024-01-25T07:14:20,167 to the `packages` configuration field. 2024-01-25T07:14:20,173 Alternatively, you can also rely on setuptools' discovery methods 2024-01-25T07:14:20,173 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-25T07:14:20,174 instead of `find_packages(...)`/`find:`). 2024-01-25T07:14:20,175 You can read more about "package discovery" on setuptools documentation page: 2024-01-25T07:14:20,177 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-25T07:14:20,179 If you don't want 'witch_msa.tools.magus.tools.mlrmcl' to be distributed and are 2024-01-25T07:14:20,180 already explicitly excluding 'witch_msa.tools.magus.tools.mlrmcl' via 2024-01-25T07:14:20,181 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-25T07:14:20,181 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-25T07:14:20,182 combination with a more fine grained `package-data` configuration. 2024-01-25T07:14:20,185 You can read more about "package data files" on setuptools documentation page: 2024-01-25T07:14:20,193 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-25T07:14:20,197 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-25T07:14:20,197 even if it does not contain any `.py` files. 2024-01-25T07:14:20,198 On the other hand, currently there is no concept of package data 2024-01-25T07:14:20,199 directory, all directories are treated like packages. 2024-01-25T07:14:20,199 ******************************************************************************** 2024-01-25T07:14:20,201 !! 2024-01-25T07:14:20,201 check.warn(importable) 2024-01-25T07:14:20,203 /tmp/pip-build-env-gtem25y8/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'witch_msa.tools.magus.tools.raxmlng' is absent from the `packages` configuration. 2024-01-25T07:14:20,210 !! 2024-01-25T07:14:20,214 ******************************************************************************** 2024-01-25T07:14:20,215 ############################ 2024-01-25T07:14:20,219 # Package would be ignored # 2024-01-25T07:14:20,219 ############################ 2024-01-25T07:14:20,220 Python recognizes 'witch_msa.tools.magus.tools.raxmlng' as an importable package[^1], 2024-01-25T07:14:20,220 but it is absent from setuptools' `packages` configuration. 2024-01-25T07:14:20,224 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-25T07:14:20,229 package, please make sure that 'witch_msa.tools.magus.tools.raxmlng' is explicitly added 2024-01-25T07:14:20,234 to the `packages` configuration field. 2024-01-25T07:14:20,235 Alternatively, you can also rely on setuptools' discovery methods 2024-01-25T07:14:20,235 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-25T07:14:20,235 instead of `find_packages(...)`/`find:`). 2024-01-25T07:14:20,236 You can read more about "package discovery" on setuptools documentation page: 2024-01-25T07:14:20,237 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-25T07:14:20,238 If you don't want 'witch_msa.tools.magus.tools.raxmlng' to be distributed and are 2024-01-25T07:14:20,239 already explicitly excluding 'witch_msa.tools.magus.tools.raxmlng' via 2024-01-25T07:14:20,239 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-25T07:14:20,241 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-25T07:14:20,243 combination with a more fine grained `package-data` configuration. 2024-01-25T07:14:20,245 You can read more about "package data files" on setuptools documentation page: 2024-01-25T07:14:20,247 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-25T07:14:20,249 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-25T07:14:20,250 even if it does not contain any `.py` files. 2024-01-25T07:14:20,250 On the other hand, currently there is no concept of package data 2024-01-25T07:14:20,251 directory, all directories are treated like packages. 2024-01-25T07:14:20,252 ******************************************************************************** 2024-01-25T07:14:20,259 !! 2024-01-25T07:14:20,262 check.warn(importable) 2024-01-25T07:14:20,262 copying witch_msa/default.config -> build/lib/witch_msa 2024-01-25T07:14:20,263 creating build/lib/witch_msa/tools 2024-01-25T07:14:20,264 creating build/lib/witch_msa/tools/macOS 2024-01-25T07:14:20,264 copying witch_msa/tools/macOS/FastTreeMP -> build/lib/witch_msa/tools/macOS 2024-01-25T07:14:20,265 copying witch_msa/tools/macOS/hmmalign -> build/lib/witch_msa/tools/macOS 2024-01-25T07:14:20,265 copying witch_msa/tools/macOS/hmmbuild -> build/lib/witch_msa/tools/macOS 2024-01-25T07:14:20,266 copying witch_msa/tools/macOS/hmmsearch -> build/lib/witch_msa/tools/macOS 2024-01-25T07:14:20,267 copying witch_msa/tools/macOS/mafft -> build/lib/witch_msa/tools/macOS 2024-01-25T07:14:20,267 copying witch_msa/tools/macOS/mcl -> build/lib/witch_msa/tools/macOS 2024-01-25T07:14:20,268 creating build/lib/witch_msa/tools/magus 2024-01-25T07:14:20,273 copying witch_msa/tools/magus/README.md -> build/lib/witch_msa/tools/magus 2024-01-25T07:14:20,274 copying witch_msa/tools/magus/configuration.py -> build/lib/witch_msa/tools/magus 2024-01-25T07:14:20,275 copying witch_msa/tools/magus/magus.py -> build/lib/witch_msa/tools/magus 2024-01-25T07:14:20,279 creating build/lib/witch_msa/tools/magus/align 2024-01-25T07:14:20,287 copying witch_msa/tools/magus/align/__init__.py -> build/lib/witch_msa/tools/magus/align 2024-01-25T07:14:20,288 copying witch_msa/tools/magus/align/aligner.py -> build/lib/witch_msa/tools/magus/align 2024-01-25T07:14:20,288 copying witch_msa/tools/magus/align/alignment_context.py -> build/lib/witch_msa/tools/magus/align 2024-01-25T07:14:20,289 creating build/lib/witch_msa/tools/magus/align/decompose 2024-01-25T07:14:20,289 copying witch_msa/tools/magus/align/decompose/__init__.py -> build/lib/witch_msa/tools/magus/align/decompose 2024-01-25T07:14:20,290 copying witch_msa/tools/magus/align/decompose/decomposer.py -> build/lib/witch_msa/tools/magus/align/decompose 2024-01-25T07:14:20,290 copying witch_msa/tools/magus/align/decompose/initial_tree.py -> build/lib/witch_msa/tools/magus/align/decompose 2024-01-25T07:14:20,290 copying witch_msa/tools/magus/align/decompose/kmh.py -> build/lib/witch_msa/tools/magus/align/decompose 2024-01-25T07:14:20,291 creating build/lib/witch_msa/tools/magus/align/merge 2024-01-25T07:14:20,291 copying witch_msa/tools/magus/align/merge/__init__.py -> build/lib/witch_msa/tools/magus/align/merge 2024-01-25T07:14:20,292 copying witch_msa/tools/magus/align/merge/alignment_graph.py -> build/lib/witch_msa/tools/magus/align/merge 2024-01-25T07:14:20,292 copying witch_msa/tools/magus/align/merge/alignment_writer.py -> build/lib/witch_msa/tools/magus/align/merge 2024-01-25T07:14:20,293 copying witch_msa/tools/magus/align/merge/merger.py -> build/lib/witch_msa/tools/magus/align/merge 2024-01-25T07:14:20,293 copying witch_msa/tools/magus/align/merge/optimizer.py -> build/lib/witch_msa/tools/magus/align/merge 2024-01-25T07:14:20,294 creating build/lib/witch_msa/tools/magus/align/merge/graph_build 2024-01-25T07:14:20,294 copying witch_msa/tools/magus/align/merge/graph_build/__init__.py -> build/lib/witch_msa/tools/magus/align/merge/graph_build 2024-01-25T07:14:20,295 copying witch_msa/tools/magus/align/merge/graph_build/graph_builder.py -> build/lib/witch_msa/tools/magus/align/merge/graph_build 2024-01-25T07:14:20,296 creating build/lib/witch_msa/tools/magus/align/merge/graph_cluster 2024-01-25T07:14:20,296 copying witch_msa/tools/magus/align/merge/graph_cluster/__init__.py -> build/lib/witch_msa/tools/magus/align/merge/graph_cluster 2024-01-25T07:14:20,297 copying witch_msa/tools/magus/align/merge/graph_cluster/clean_clusters.py -> build/lib/witch_msa/tools/magus/align/merge/graph_cluster 2024-01-25T07:14:20,298 copying witch_msa/tools/magus/align/merge/graph_cluster/clusterer.py -> build/lib/witch_msa/tools/magus/align/merge/graph_cluster 2024-01-25T07:14:20,298 copying witch_msa/tools/magus/align/merge/graph_cluster/mcl.py -> build/lib/witch_msa/tools/magus/align/merge/graph_cluster 2024-01-25T07:14:20,299 copying witch_msa/tools/magus/align/merge/graph_cluster/mlr_mcl.py -> build/lib/witch_msa/tools/magus/align/merge/graph_cluster 2024-01-25T07:14:20,302 copying witch_msa/tools/magus/align/merge/graph_cluster/rg.py -> build/lib/witch_msa/tools/magus/align/merge/graph_cluster 2024-01-25T07:14:20,305 creating build/lib/witch_msa/tools/magus/align/merge/graph_trace 2024-01-25T07:14:20,306 copying witch_msa/tools/magus/align/merge/graph_trace/__init__.py -> build/lib/witch_msa/tools/magus/align/merge/graph_trace 2024-01-25T07:14:20,306 copying witch_msa/tools/magus/align/merge/graph_trace/fm.py -> build/lib/witch_msa/tools/magus/align/merge/graph_trace 2024-01-25T07:14:20,307 copying witch_msa/tools/magus/align/merge/graph_trace/min_clusters.py -> build/lib/witch_msa/tools/magus/align/merge/graph_trace 2024-01-25T07:14:20,307 copying witch_msa/tools/magus/align/merge/graph_trace/mwt_search.py -> build/lib/witch_msa/tools/magus/align/merge/graph_trace 2024-01-25T07:14:20,308 copying witch_msa/tools/magus/align/merge/graph_trace/naive.py -> build/lib/witch_msa/tools/magus/align/merge/graph_trace 2024-01-25T07:14:20,313 copying witch_msa/tools/magus/align/merge/graph_trace/rg_fast_search.py -> build/lib/witch_msa/tools/magus/align/merge/graph_trace 2024-01-25T07:14:20,320 copying witch_msa/tools/magus/align/merge/graph_trace/rg_search.py -> build/lib/witch_msa/tools/magus/align/merge/graph_trace 2024-01-25T07:14:20,323 copying witch_msa/tools/magus/align/merge/graph_trace/tracer.py -> build/lib/witch_msa/tools/magus/align/merge/graph_trace 2024-01-25T07:14:20,324 creating build/lib/witch_msa/tools/magus/helpers 2024-01-25T07:14:20,325 copying witch_msa/tools/magus/helpers/__init__.py -> build/lib/witch_msa/tools/magus/helpers 2024-01-25T07:14:20,326 copying witch_msa/tools/magus/helpers/hmmutils.py -> build/lib/witch_msa/tools/magus/helpers 2024-01-25T07:14:20,328 copying witch_msa/tools/magus/helpers/sequenceutils.py -> build/lib/witch_msa/tools/magus/helpers 2024-01-25T07:14:20,328 copying witch_msa/tools/magus/helpers/treeutils.py -> build/lib/witch_msa/tools/magus/helpers 2024-01-25T07:14:20,329 creating build/lib/witch_msa/tools/magus/tasks 2024-01-25T07:14:20,329 copying witch_msa/tools/magus/tasks/__init__.py -> build/lib/witch_msa/tools/magus/tasks 2024-01-25T07:14:20,330 copying witch_msa/tools/magus/tasks/controller.py -> build/lib/witch_msa/tools/magus/tasks 2024-01-25T07:14:20,330 copying witch_msa/tools/magus/tasks/files.py -> build/lib/witch_msa/tools/magus/tasks 2024-01-25T07:14:20,331 copying witch_msa/tools/magus/tasks/manager.py -> build/lib/witch_msa/tools/magus/tasks 2024-01-25T07:14:20,331 copying witch_msa/tools/magus/tasks/task.py -> build/lib/witch_msa/tools/magus/tasks 2024-01-25T07:14:20,331 creating build/lib/witch_msa/tools/magus/tools 2024-01-25T07:14:20,332 copying witch_msa/tools/magus/tools/__init__.py -> build/lib/witch_msa/tools/magus/tools 2024-01-25T07:14:20,332 copying witch_msa/tools/magus/tools/external_tools.py -> build/lib/witch_msa/tools/magus/tools 2024-01-25T07:14:20,333 creating build/lib/witch_msa/tools/magus/tools/clustal 2024-01-25T07:14:20,333 copying witch_msa/tools/magus/tools/clustal/clustalo -> build/lib/witch_msa/tools/magus/tools/clustal 2024-01-25T07:14:20,334 creating build/lib/witch_msa/tools/magus/tools/fasttree 2024-01-25T07:14:20,337 copying witch_msa/tools/magus/tools/fasttree/FastTree -> build/lib/witch_msa/tools/magus/tools/fasttree 2024-01-25T07:14:20,339 copying witch_msa/tools/magus/tools/fasttree/FastTreeMP -> build/lib/witch_msa/tools/magus/tools/fasttree 2024-01-25T07:14:20,342 creating build/lib/witch_msa/tools/magus/tools/hmmer 2024-01-25T07:14:20,344 copying witch_msa/tools/magus/tools/hmmer/hmmalign -> build/lib/witch_msa/tools/magus/tools/hmmer 2024-01-25T07:14:20,344 copying witch_msa/tools/magus/tools/hmmer/hmmbuild -> build/lib/witch_msa/tools/magus/tools/hmmer 2024-01-25T07:14:20,345 copying witch_msa/tools/magus/tools/hmmer/hmmsearch -> build/lib/witch_msa/tools/magus/tools/hmmer 2024-01-25T07:14:20,345 creating build/lib/witch_msa/tools/magus/tools/mafft 2024-01-25T07:14:20,346 copying witch_msa/tools/magus/tools/mafft/mafft -> build/lib/witch_msa/tools/magus/tools/mafft 2024-01-25T07:14:20,346 creating build/lib/witch_msa/tools/magus/tools/mafft/mafftdir 2024-01-25T07:14:20,347 creating build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/bin 2024-01-25T07:14:20,347 copying witch_msa/tools/magus/tools/mafft/mafftdir/bin/mafft -> build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/bin 2024-01-25T07:14:20,348 creating build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:20,348 copying witch_msa/tools/magus/tools/mafft/mafftdir/libexec/addsingle -> build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:20,349 copying witch_msa/tools/magus/tools/mafft/mafftdir/libexec/contrafoldwrap -> build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:20,349 copying witch_msa/tools/magus/tools/mafft/mafftdir/libexec/countlen -> build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:20,350 copying witch_msa/tools/magus/tools/mafft/mafftdir/libexec/dash_client -> build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:20,351 copying witch_msa/tools/magus/tools/mafft/mafftdir/libexec/disttbfast -> build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:20,363 copying witch_msa/tools/magus/tools/mafft/mafftdir/libexec/dndblast -> build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:20,364 copying witch_msa/tools/magus/tools/mafft/mafftdir/libexec/dndfast7 -> build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:20,364 copying witch_msa/tools/magus/tools/mafft/mafftdir/libexec/dndpre -> build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:20,365 copying witch_msa/tools/magus/tools/mafft/mafftdir/libexec/dvtditr -> build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:20,369 copying witch_msa/tools/magus/tools/mafft/mafftdir/libexec/f2cl -> build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:20,369 copying witch_msa/tools/magus/tools/mafft/mafftdir/libexec/getlag -> build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:20,370 copying witch_msa/tools/magus/tools/mafft/mafftdir/libexec/hex2maffttext -> build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:20,370 copying witch_msa/tools/magus/tools/mafft/mafftdir/libexec/mafft-distance -> build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:20,372 copying witch_msa/tools/magus/tools/mafft/mafftdir/libexec/mafft-homologs.1 -> build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:20,375 copying witch_msa/tools/magus/tools/mafft/mafftdir/libexec/mafft-profile -> build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:20,377 copying witch_msa/tools/magus/tools/mafft/mafftdir/libexec/mafft.1 -> build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:20,380 copying witch_msa/tools/magus/tools/mafft/mafftdir/libexec/mafftash_premafft.pl -> build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:20,382 copying witch_msa/tools/magus/tools/mafft/mafftdir/libexec/maffttext2hex -> build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:20,384 copying witch_msa/tools/magus/tools/mafft/mafftdir/libexec/makedirectionlist -> build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:20,385 copying witch_msa/tools/magus/tools/mafft/mafftdir/libexec/mccaskillwrap -> build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:20,386 copying witch_msa/tools/magus/tools/mafft/mafftdir/libexec/multi2hat3s -> build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:20,386 copying witch_msa/tools/magus/tools/mafft/mafftdir/libexec/nodepair -> build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:20,388 copying witch_msa/tools/magus/tools/mafft/mafftdir/libexec/pairash -> build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:20,411 copying witch_msa/tools/magus/tools/mafft/mafftdir/libexec/pairlocalalign -> build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:20,431 copying witch_msa/tools/magus/tools/mafft/mafftdir/libexec/regtable2seq -> build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:20,446 copying witch_msa/tools/magus/tools/mafft/mafftdir/libexec/replaceu -> build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:20,463 copying witch_msa/tools/magus/tools/mafft/mafftdir/libexec/restoreu -> build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:20,478 copying witch_msa/tools/magus/tools/mafft/mafftdir/libexec/score -> build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:20,494 copying witch_msa/tools/magus/tools/mafft/mafftdir/libexec/seekquencer_premafft.pl -> build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:20,497 copying witch_msa/tools/magus/tools/mafft/mafftdir/libexec/seq2regtable -> build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:20,508 copying witch_msa/tools/magus/tools/mafft/mafftdir/libexec/setcore -> build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:20,529 copying witch_msa/tools/magus/tools/mafft/mafftdir/libexec/setdirection -> build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:20,544 copying witch_msa/tools/magus/tools/mafft/mafftdir/libexec/sextet5 -> build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:20,563 copying witch_msa/tools/magus/tools/mafft/mafftdir/libexec/splittbfast -> build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:20,583 copying witch_msa/tools/magus/tools/mafft/mafftdir/libexec/tbfast -> build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:20,604 copying witch_msa/tools/magus/tools/mafft/mafftdir/libexec/version -> build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:20,615 creating build/lib/witch_msa/tools/magus/tools/mcl 2024-01-25T07:14:20,615 creating build/lib/witch_msa/tools/magus/tools/mcl/bin 2024-01-25T07:14:20,616 copying witch_msa/tools/magus/tools/mcl/bin/clm -> build/lib/witch_msa/tools/magus/tools/mcl/bin 2024-01-25T07:14:20,639 copying witch_msa/tools/magus/tools/mcl/bin/clmformat -> build/lib/witch_msa/tools/magus/tools/mcl/bin 2024-01-25T07:14:20,660 copying witch_msa/tools/magus/tools/mcl/bin/clxdo -> build/lib/witch_msa/tools/magus/tools/mcl/bin 2024-01-25T07:14:20,662 copying witch_msa/tools/magus/tools/mcl/bin/mcl -> build/lib/witch_msa/tools/magus/tools/mcl/bin 2024-01-25T07:14:20,682 copying witch_msa/tools/magus/tools/mcl/bin/mclblastline -> build/lib/witch_msa/tools/magus/tools/mcl/bin 2024-01-25T07:14:20,684 copying witch_msa/tools/magus/tools/mcl/bin/mclcm -> build/lib/witch_msa/tools/magus/tools/mcl/bin 2024-01-25T07:14:20,704 copying witch_msa/tools/magus/tools/mcl/bin/mclpipeline -> build/lib/witch_msa/tools/magus/tools/mcl/bin 2024-01-25T07:14:20,713 copying witch_msa/tools/magus/tools/mcl/bin/mcx -> build/lib/witch_msa/tools/magus/tools/mcl/bin 2024-01-25T07:14:20,737 copying witch_msa/tools/magus/tools/mcl/bin/mcxarray -> build/lib/witch_msa/tools/magus/tools/mcl/bin 2024-01-25T07:14:20,759 copying witch_msa/tools/magus/tools/mcl/bin/mcxassemble -> build/lib/witch_msa/tools/magus/tools/mcl/bin 2024-01-25T07:14:20,779 copying witch_msa/tools/magus/tools/mcl/bin/mcxdeblast -> build/lib/witch_msa/tools/magus/tools/mcl/bin 2024-01-25T07:14:20,782 copying witch_msa/tools/magus/tools/mcl/bin/mcxdump -> build/lib/witch_msa/tools/magus/tools/mcl/bin 2024-01-25T07:14:20,804 copying witch_msa/tools/magus/tools/mcl/bin/mcxi -> build/lib/witch_msa/tools/magus/tools/mcl/bin 2024-01-25T07:14:20,825 copying witch_msa/tools/magus/tools/mcl/bin/mcxload -> build/lib/witch_msa/tools/magus/tools/mcl/bin 2024-01-25T07:14:20,846 copying witch_msa/tools/magus/tools/mcl/bin/mcxmap -> build/lib/witch_msa/tools/magus/tools/mcl/bin 2024-01-25T07:14:20,861 copying witch_msa/tools/magus/tools/mcl/bin/mcxrand -> build/lib/witch_msa/tools/magus/tools/mcl/bin 2024-01-25T07:14:20,874 copying witch_msa/tools/magus/tools/mcl/bin/mcxsubs -> build/lib/witch_msa/tools/magus/tools/mcl/bin 2024-01-25T07:14:20,897 creating build/lib/witch_msa/tools/magus/tools/mlrmcl 2024-01-25T07:14:20,898 copying witch_msa/tools/magus/tools/mlrmcl/README -> build/lib/witch_msa/tools/magus/tools/mlrmcl 2024-01-25T07:14:20,900 copying witch_msa/tools/magus/tools/mlrmcl/mlrmcl -> build/lib/witch_msa/tools/magus/tools/mlrmcl 2024-01-25T07:14:20,905 copying witch_msa/tools/magus/tools/mlrmcl/ncut -> build/lib/witch_msa/tools/magus/tools/mlrmcl 2024-01-25T07:14:20,909 creating build/lib/witch_msa/tools/magus/tools/raxmlng 2024-01-25T07:14:20,910 copying witch_msa/tools/magus/tools/raxmlng/raxml-ng -> build/lib/witch_msa/tools/magus/tools/raxmlng 2024-01-25T07:14:21,025 running build_scripts 2024-01-25T07:14:21,026 creating build/scripts-3.11 2024-01-25T07:14:21,027 copying and adjusting bin/witch-msa -> build/scripts-3.11 2024-01-25T07:14:21,029 copying and adjusting witch.py -> build/scripts-3.11 2024-01-25T07:14:21,030 changing mode of build/scripts-3.11/witch-msa from 644 to 755 2024-01-25T07:14:21,031 changing mode of build/scripts-3.11/witch.py from 644 to 755 2024-01-25T07:14:21,038 installing to build/bdist.linux-armv7l/wheel 2024-01-25T07:14:21,038 running install 2024-01-25T07:14:21,063 running install_lib 2024-01-25T07:14:21,067 creating build/bdist.linux-armv7l 2024-01-25T07:14:21,068 creating build/bdist.linux-armv7l/wheel 2024-01-25T07:14:21,070 creating build/bdist.linux-armv7l/wheel/witch_msa 2024-01-25T07:14:21,071 copying build/lib/witch_msa/default.config -> build/bdist.linux-armv7l/wheel/witch_msa 2024-01-25T07:14:21,075 copying build/lib/witch_msa/__init__.py -> build/bdist.linux-armv7l/wheel/witch_msa 2024-01-25T07:14:21,078 copying build/lib/witch_msa/init_configs.py -> build/bdist.linux-armv7l/wheel/witch_msa 2024-01-25T07:14:21,080 copying build/lib/witch_msa/configs.py -> build/bdist.linux-armv7l/wheel/witch_msa 2024-01-25T07:14:21,083 creating build/bdist.linux-armv7l/wheel/witch_msa/gcmm 2024-01-25T07:14:21,084 copying build/lib/witch_msa/gcmm/results_handler.py -> build/bdist.linux-armv7l/wheel/witch_msa/gcmm 2024-01-25T07:14:21,087 copying build/lib/witch_msa/gcmm/algorithm.py -> build/bdist.linux-armv7l/wheel/witch_msa/gcmm 2024-01-25T07:14:21,089 copying build/lib/witch_msa/gcmm/__init__.py -> build/bdist.linux-armv7l/wheel/witch_msa/gcmm 2024-01-25T07:14:21,092 copying build/lib/witch_msa/gcmm/callback.py -> build/bdist.linux-armv7l/wheel/witch_msa/gcmm 2024-01-25T07:14:21,093 copying build/lib/witch_msa/gcmm/backbone.py -> build/bdist.linux-armv7l/wheel/witch_msa/gcmm 2024-01-25T07:14:21,096 copying build/lib/witch_msa/gcmm/gcmm.py -> build/bdist.linux-armv7l/wheel/witch_msa/gcmm 2024-01-25T07:14:21,098 copying build/lib/witch_msa/gcmm/loader.py -> build/bdist.linux-armv7l/wheel/witch_msa/gcmm 2024-01-25T07:14:21,101 copying build/lib/witch_msa/gcmm/aligner.py -> build/bdist.linux-armv7l/wheel/witch_msa/gcmm 2024-01-25T07:14:21,104 copying build/lib/witch_msa/gcmm/tree.py -> build/bdist.linux-armv7l/wheel/witch_msa/gcmm 2024-01-25T07:14:21,107 copying build/lib/witch_msa/gcmm/decompose_tree.py -> build/bdist.linux-armv7l/wheel/witch_msa/gcmm 2024-01-25T07:14:21,109 copying build/lib/witch_msa/gcmm/merger.py -> build/bdist.linux-armv7l/wheel/witch_msa/gcmm 2024-01-25T07:14:21,111 copying build/lib/witch_msa/gcmm/task.py -> build/bdist.linux-armv7l/wheel/witch_msa/gcmm 2024-01-25T07:14:21,113 copying build/lib/witch_msa/gcmm/weighting.py -> build/bdist.linux-armv7l/wheel/witch_msa/gcmm 2024-01-25T07:14:21,116 creating build/bdist.linux-armv7l/wheel/witch_msa/tools 2024-01-25T07:14:21,118 creating build/bdist.linux-armv7l/wheel/witch_msa/tools/magus 2024-01-25T07:14:21,119 creating build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tasks 2024-01-25T07:14:21,121 copying build/lib/witch_msa/tools/magus/tasks/files.py -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tasks 2024-01-25T07:14:21,123 copying build/lib/witch_msa/tools/magus/tasks/__init__.py -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tasks 2024-01-25T07:14:21,124 copying build/lib/witch_msa/tools/magus/tasks/manager.py -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tasks 2024-01-25T07:14:21,127 copying build/lib/witch_msa/tools/magus/tasks/controller.py -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tasks 2024-01-25T07:14:21,129 copying build/lib/witch_msa/tools/magus/tasks/task.py -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tasks 2024-01-25T07:14:21,131 copying build/lib/witch_msa/tools/magus/magus.py -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus 2024-01-25T07:14:21,134 creating build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/align 2024-01-25T07:14:21,135 creating build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/align/decompose 2024-01-25T07:14:21,137 copying build/lib/witch_msa/tools/magus/align/decompose/initial_tree.py -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/align/decompose 2024-01-25T07:14:21,139 copying build/lib/witch_msa/tools/magus/align/decompose/kmh.py -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/align/decompose 2024-01-25T07:14:21,142 copying build/lib/witch_msa/tools/magus/align/decompose/__init__.py -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/align/decompose 2024-01-25T07:14:21,144 copying build/lib/witch_msa/tools/magus/align/decompose/decomposer.py -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/align/decompose 2024-01-25T07:14:21,146 copying build/lib/witch_msa/tools/magus/align/__init__.py -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/align 2024-01-25T07:14:21,148 copying build/lib/witch_msa/tools/magus/align/alignment_context.py -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/align 2024-01-25T07:14:21,150 creating build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/align/merge 2024-01-25T07:14:21,152 copying build/lib/witch_msa/tools/magus/align/merge/optimizer.py -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/align/merge 2024-01-25T07:14:21,155 creating build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/align/merge/graph_build 2024-01-25T07:14:21,156 copying build/lib/witch_msa/tools/magus/align/merge/graph_build/__init__.py -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/align/merge/graph_build 2024-01-25T07:14:21,157 copying build/lib/witch_msa/tools/magus/align/merge/graph_build/graph_builder.py -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/align/merge/graph_build 2024-01-25T07:14:21,160 copying build/lib/witch_msa/tools/magus/align/merge/__init__.py -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/align/merge 2024-01-25T07:14:21,162 copying build/lib/witch_msa/tools/magus/align/merge/alignment_graph.py -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/align/merge 2024-01-25T07:14:21,165 creating build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/align/merge/graph_cluster 2024-01-25T07:14:21,166 copying build/lib/witch_msa/tools/magus/align/merge/graph_cluster/__init__.py -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/align/merge/graph_cluster 2024-01-25T07:14:21,168 copying build/lib/witch_msa/tools/magus/align/merge/graph_cluster/clean_clusters.py -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/align/merge/graph_cluster 2024-01-25T07:14:21,170 copying build/lib/witch_msa/tools/magus/align/merge/graph_cluster/rg.py -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/align/merge/graph_cluster 2024-01-25T07:14:21,172 copying build/lib/witch_msa/tools/magus/align/merge/graph_cluster/clusterer.py -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/align/merge/graph_cluster 2024-01-25T07:14:21,174 copying build/lib/witch_msa/tools/magus/align/merge/graph_cluster/mlr_mcl.py -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/align/merge/graph_cluster 2024-01-25T07:14:21,176 copying build/lib/witch_msa/tools/magus/align/merge/graph_cluster/mcl.py -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/align/merge/graph_cluster 2024-01-25T07:14:21,177 copying build/lib/witch_msa/tools/magus/align/merge/alignment_writer.py -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/align/merge 2024-01-25T07:14:21,180 creating build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/align/merge/graph_trace 2024-01-25T07:14:21,182 copying build/lib/witch_msa/tools/magus/align/merge/graph_trace/__init__.py -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/align/merge/graph_trace 2024-01-25T07:14:21,183 copying build/lib/witch_msa/tools/magus/align/merge/graph_trace/fm.py -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/align/merge/graph_trace 2024-01-25T07:14:21,186 copying build/lib/witch_msa/tools/magus/align/merge/graph_trace/min_clusters.py -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/align/merge/graph_trace 2024-01-25T07:14:21,189 copying build/lib/witch_msa/tools/magus/align/merge/graph_trace/rg_search.py -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/align/merge/graph_trace 2024-01-25T07:14:21,192 copying build/lib/witch_msa/tools/magus/align/merge/graph_trace/tracer.py -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/align/merge/graph_trace 2024-01-25T07:14:21,194 copying build/lib/witch_msa/tools/magus/align/merge/graph_trace/naive.py -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/align/merge/graph_trace 2024-01-25T07:14:21,196 copying build/lib/witch_msa/tools/magus/align/merge/graph_trace/mwt_search.py -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/align/merge/graph_trace 2024-01-25T07:14:21,198 copying build/lib/witch_msa/tools/magus/align/merge/graph_trace/rg_fast_search.py -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/align/merge/graph_trace 2024-01-25T07:14:21,201 copying build/lib/witch_msa/tools/magus/align/merge/merger.py -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/align/merge 2024-01-25T07:14:21,203 copying build/lib/witch_msa/tools/magus/align/aligner.py -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/align 2024-01-25T07:14:21,205 copying build/lib/witch_msa/tools/magus/README.md -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus 2024-01-25T07:14:21,208 creating build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools 2024-01-25T07:14:21,209 creating build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/clustal 2024-01-25T07:14:21,211 copying build/lib/witch_msa/tools/magus/tools/clustal/clustalo -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/clustal 2024-01-25T07:14:21,282 copying build/lib/witch_msa/tools/magus/tools/__init__.py -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools 2024-01-25T07:14:21,284 creating build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/fasttree 2024-01-25T07:14:21,285 copying build/lib/witch_msa/tools/magus/tools/fasttree/FastTree -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/fasttree 2024-01-25T07:14:21,292 copying build/lib/witch_msa/tools/magus/tools/fasttree/FastTreeMP -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/fasttree 2024-01-25T07:14:21,300 copying build/lib/witch_msa/tools/magus/tools/external_tools.py -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools 2024-01-25T07:14:21,303 creating build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/raxmlng 2024-01-25T07:14:21,304 copying build/lib/witch_msa/tools/magus/tools/raxmlng/raxml-ng -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/raxmlng 2024-01-25T07:14:21,420 creating build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mcl 2024-01-25T07:14:21,421 creating build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mcl/bin 2024-01-25T07:14:21,422 copying build/lib/witch_msa/tools/magus/tools/mcl/bin/mcxdump -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mcl/bin 2024-01-25T07:14:21,444 copying build/lib/witch_msa/tools/magus/tools/mcl/bin/clm -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mcl/bin 2024-01-25T07:14:21,465 copying build/lib/witch_msa/tools/magus/tools/mcl/bin/mcxmap -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mcl/bin 2024-01-25T07:14:21,486 copying build/lib/witch_msa/tools/magus/tools/mcl/bin/mclblastline -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mcl/bin 2024-01-25T07:14:21,488 copying build/lib/witch_msa/tools/magus/tools/mcl/bin/mclcm -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mcl/bin 2024-01-25T07:14:21,508 copying build/lib/witch_msa/tools/magus/tools/mcl/bin/clmformat -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mcl/bin 2024-01-25T07:14:21,530 copying build/lib/witch_msa/tools/magus/tools/mcl/bin/mcxassemble -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mcl/bin 2024-01-25T07:14:21,549 copying build/lib/witch_msa/tools/magus/tools/mcl/bin/mcxsubs -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mcl/bin 2024-01-25T07:14:21,569 copying build/lib/witch_msa/tools/magus/tools/mcl/bin/mcxi -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mcl/bin 2024-01-25T07:14:21,591 copying build/lib/witch_msa/tools/magus/tools/mcl/bin/mclpipeline -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mcl/bin 2024-01-25T07:14:21,594 copying build/lib/witch_msa/tools/magus/tools/mcl/bin/mcl -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mcl/bin 2024-01-25T07:14:21,613 copying build/lib/witch_msa/tools/magus/tools/mcl/bin/mcx -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mcl/bin 2024-01-25T07:14:21,637 copying build/lib/witch_msa/tools/magus/tools/mcl/bin/mcxload -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mcl/bin 2024-01-25T07:14:21,655 copying build/lib/witch_msa/tools/magus/tools/mcl/bin/mcxrand -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mcl/bin 2024-01-25T07:14:21,668 copying build/lib/witch_msa/tools/magus/tools/mcl/bin/mcxdeblast -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mcl/bin 2024-01-25T07:14:21,670 copying build/lib/witch_msa/tools/magus/tools/mcl/bin/clxdo -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mcl/bin 2024-01-25T07:14:21,673 copying build/lib/witch_msa/tools/magus/tools/mcl/bin/mcxarray -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mcl/bin 2024-01-25T07:14:21,696 creating build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/hmmer 2024-01-25T07:14:21,697 copying build/lib/witch_msa/tools/magus/tools/hmmer/hmmsearch -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/hmmer 2024-01-25T07:14:21,721 copying build/lib/witch_msa/tools/magus/tools/hmmer/hmmalign -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/hmmer 2024-01-25T07:14:21,746 copying build/lib/witch_msa/tools/magus/tools/hmmer/hmmbuild -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/hmmer 2024-01-25T07:14:21,770 creating build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mafft 2024-01-25T07:14:21,771 creating build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mafft/mafftdir 2024-01-25T07:14:21,773 creating build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:21,774 copying build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec/setdirection -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:21,788 copying build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec/dndfast7 -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:21,805 copying build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec/splittbfast -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:21,826 copying build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec/version -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:21,836 copying build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec/sextet5 -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:21,852 copying build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec/dndblast -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:21,869 copying build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec/multi2hat3s -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:21,890 copying build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec/score -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:21,906 copying build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec/replaceu -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:21,922 copying build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec/restoreu -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:21,936 copying build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec/dash_client -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:22,002 copying build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec/hex2maffttext -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:22,013 copying build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec/mafft.1 -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:22,015 copying build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec/countlen -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:22,026 copying build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec/setcore -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:22,046 copying build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec/mafftash_premafft.pl -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:22,048 copying build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec/seekquencer_premafft.pl -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:22,051 copying build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec/pairlocalalign -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:22,076 copying build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec/f2cl -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:22,090 copying build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec/makedirectionlist -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:22,112 copying build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec/getlag -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:22,135 copying build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec/maffttext2hex -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:22,145 copying build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec/mccaskillwrap -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:22,161 copying build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec/regtable2seq -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:22,175 copying build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec/addsingle -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:22,197 copying build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec/tbfast -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:22,217 copying build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec/mafft-homologs.1 -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:22,220 copying build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec/mafft-distance -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:22,236 copying build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec/dvtditr -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:22,259 copying build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec/disttbfast -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:22,282 copying build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec/contrafoldwrap -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:22,301 copying build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec/dndpre -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:22,319 copying build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec/mafft-profile -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:22,339 copying build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec/seq2regtable -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:22,351 copying build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec/nodepair -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:22,371 copying build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/libexec/pairash -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mafft/mafftdir/libexec 2024-01-25T07:14:22,391 creating build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mafft/mafftdir/bin 2024-01-25T07:14:22,392 copying build/lib/witch_msa/tools/magus/tools/mafft/mafftdir/bin/mafft -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mafft/mafftdir/bin 2024-01-25T07:14:22,396 copying build/lib/witch_msa/tools/magus/tools/mafft/mafft -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mafft 2024-01-25T07:14:22,398 creating build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mlrmcl 2024-01-25T07:14:22,399 copying build/lib/witch_msa/tools/magus/tools/mlrmcl/README -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mlrmcl 2024-01-25T07:14:22,401 copying build/lib/witch_msa/tools/magus/tools/mlrmcl/ncut -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mlrmcl 2024-01-25T07:14:22,405 copying build/lib/witch_msa/tools/magus/tools/mlrmcl/mlrmcl -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/tools/mlrmcl 2024-01-25T07:14:22,409 copying build/lib/witch_msa/tools/magus/configuration.py -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus 2024-01-25T07:14:22,411 creating build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/helpers 2024-01-25T07:14:22,412 copying build/lib/witch_msa/tools/magus/helpers/__init__.py -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/helpers 2024-01-25T07:14:22,414 copying build/lib/witch_msa/tools/magus/helpers/sequenceutils.py -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/helpers 2024-01-25T07:14:22,416 copying build/lib/witch_msa/tools/magus/helpers/treeutils.py -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/helpers 2024-01-25T07:14:22,418 copying build/lib/witch_msa/tools/magus/helpers/hmmutils.py -> build/bdist.linux-armv7l/wheel/witch_msa/tools/magus/helpers 2024-01-25T07:14:22,421 creating build/bdist.linux-armv7l/wheel/witch_msa/tools/macOS 2024-01-25T07:14:22,422 copying build/lib/witch_msa/tools/macOS/FastTreeMP -> build/bdist.linux-armv7l/wheel/witch_msa/tools/macOS 2024-01-25T07:14:22,431 copying build/lib/witch_msa/tools/macOS/hmmsearch -> build/bdist.linux-armv7l/wheel/witch_msa/tools/macOS 2024-01-25T07:14:22,455 copying build/lib/witch_msa/tools/macOS/hmmalign -> build/bdist.linux-armv7l/wheel/witch_msa/tools/macOS 2024-01-25T07:14:22,474 copying build/lib/witch_msa/tools/macOS/mcl -> build/bdist.linux-armv7l/wheel/witch_msa/tools/macOS 2024-01-25T07:14:22,484 copying build/lib/witch_msa/tools/macOS/mafft -> build/bdist.linux-armv7l/wheel/witch_msa/tools/macOS 2024-01-25T07:14:22,487 copying build/lib/witch_msa/tools/macOS/hmmbuild -> build/bdist.linux-armv7l/wheel/witch_msa/tools/macOS 2024-01-25T07:14:22,504 creating build/bdist.linux-armv7l/wheel/witch_msa/helpers 2024-01-25T07:14:22,504 copying build/lib/witch_msa/helpers/pyhmmer_tools.py -> build/bdist.linux-armv7l/wheel/witch_msa/helpers 2024-01-25T07:14:22,506 copying build/lib/witch_msa/helpers/__init__.py -> build/bdist.linux-armv7l/wheel/witch_msa/helpers 2024-01-25T07:14:22,508 copying build/lib/witch_msa/helpers/math_utils.py -> build/bdist.linux-armv7l/wheel/witch_msa/helpers 2024-01-25T07:14:22,510 copying build/lib/witch_msa/helpers/alignment_tools.py -> build/bdist.linux-armv7l/wheel/witch_msa/helpers 2024-01-25T07:14:22,513 copying build/lib/witch_msa/helpers/general_tools.py -> build/bdist.linux-armv7l/wheel/witch_msa/helpers 2024-01-25T07:14:22,514 running install_egg_info 2024-01-25T07:14:22,518 Copying witch_msa.egg-info to build/bdist.linux-armv7l/wheel/witch_msa-1.0.4-py3.11.egg-info 2024-01-25T07:14:22,529 running install_scripts 2024-01-25T07:14:22,530 creating build/bdist.linux-armv7l/wheel/witch_msa-1.0.4.data 2024-01-25T07:14:22,530 creating build/bdist.linux-armv7l/wheel/witch_msa-1.0.4.data/scripts 2024-01-25T07:14:22,531 copying build/scripts-3.11/witch.py -> build/bdist.linux-armv7l/wheel/witch_msa-1.0.4.data/scripts 2024-01-25T07:14:22,533 copying build/scripts-3.11/witch-msa -> build/bdist.linux-armv7l/wheel/witch_msa-1.0.4.data/scripts 2024-01-25T07:14:22,535 changing mode of build/bdist.linux-armv7l/wheel/witch_msa-1.0.4.data/scripts/witch.py to 755 2024-01-25T07:14:22,536 changing mode of build/bdist.linux-armv7l/wheel/witch_msa-1.0.4.data/scripts/witch-msa to 755 2024-01-25T07:14:22,556 creating build/bdist.linux-armv7l/wheel/witch_msa-1.0.4.dist-info/WHEEL 2024-01-25T07:14:22,558 creating '/tmp/pip-wheel-n31rstpi/.tmp-omnka1fi/witch_msa-1.0.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-01-25T07:14:22,561 adding 'witch_msa/__init__.py' 2024-01-25T07:14:22,563 adding 'witch_msa/configs.py' 2024-01-25T07:14:22,565 adding 'witch_msa/default.config' 2024-01-25T07:14:22,566 adding 'witch_msa/init_configs.py' 2024-01-25T07:14:22,568 adding 'witch_msa/gcmm/__init__.py' 2024-01-25T07:14:22,572 adding 'witch_msa/gcmm/algorithm.py' 2024-01-25T07:14:22,575 adding 'witch_msa/gcmm/aligner.py' 2024-01-25T07:14:22,577 adding 'witch_msa/gcmm/backbone.py' 2024-01-25T07:14:22,578 adding 'witch_msa/gcmm/callback.py' 2024-01-25T07:14:22,580 adding 'witch_msa/gcmm/decompose_tree.py' 2024-01-25T07:14:22,582 adding 'witch_msa/gcmm/gcmm.py' 2024-01-25T07:14:22,584 adding 'witch_msa/gcmm/loader.py' 2024-01-25T07:14:22,585 adding 'witch_msa/gcmm/merger.py' 2024-01-25T07:14:22,587 adding 'witch_msa/gcmm/results_handler.py' 2024-01-25T07:14:22,588 adding 'witch_msa/gcmm/task.py' 2024-01-25T07:14:22,591 adding 'witch_msa/gcmm/tree.py' 2024-01-25T07:14:22,593 adding 'witch_msa/gcmm/weighting.py' 2024-01-25T07:14:22,594 adding 'witch_msa/helpers/__init__.py' 2024-01-25T07:14:22,601 adding 'witch_msa/helpers/alignment_tools.py' 2024-01-25T07:14:22,602 adding 'witch_msa/helpers/general_tools.py' 2024-01-25T07:14:22,603 adding 'witch_msa/helpers/math_utils.py' 2024-01-25T07:14:22,605 adding 'witch_msa/helpers/pyhmmer_tools.py' 2024-01-25T07:14:22,662 adding 'witch_msa/tools/macOS/FastTreeMP' 2024-01-25T07:14:22,806 adding 'witch_msa/tools/macOS/hmmalign' 2024-01-25T07:14:22,973 adding 'witch_msa/tools/macOS/hmmbuild' 2024-01-25T07:14:23,149 adding 'witch_msa/tools/macOS/hmmsearch' 2024-01-25T07:14:23,165 adding 'witch_msa/tools/macOS/mafft' 2024-01-25T07:14:23,233 adding 'witch_msa/tools/macOS/mcl' 2024-01-25T07:14:23,238 adding 'witch_msa/tools/magus/README.md' 2024-01-25T07:14:23,239 adding 'witch_msa/tools/magus/configuration.py' 2024-01-25T07:14:23,241 adding 'witch_msa/tools/magus/magus.py' 2024-01-25T07:14:23,243 adding 'witch_msa/tools/magus/align/__init__.py' 2024-01-25T07:14:23,244 adding 'witch_msa/tools/magus/align/aligner.py' 2024-01-25T07:14:23,246 adding 'witch_msa/tools/magus/align/alignment_context.py' 2024-01-25T07:14:23,247 adding 'witch_msa/tools/magus/align/decompose/__init__.py' 2024-01-25T07:14:23,249 adding 'witch_msa/tools/magus/align/decompose/decomposer.py' 2024-01-25T07:14:23,250 adding 'witch_msa/tools/magus/align/decompose/initial_tree.py' 2024-01-25T07:14:23,252 adding 'witch_msa/tools/magus/align/decompose/kmh.py' 2024-01-25T07:14:23,254 adding 'witch_msa/tools/magus/align/merge/__init__.py' 2024-01-25T07:14:23,255 adding 'witch_msa/tools/magus/align/merge/alignment_graph.py' 2024-01-25T07:14:23,257 adding 'witch_msa/tools/magus/align/merge/alignment_writer.py' 2024-01-25T07:14:23,258 adding 'witch_msa/tools/magus/align/merge/merger.py' 2024-01-25T07:14:23,261 adding 'witch_msa/tools/magus/align/merge/optimizer.py' 2024-01-25T07:14:23,263 adding 'witch_msa/tools/magus/align/merge/graph_build/__init__.py' 2024-01-25T07:14:23,265 adding 'witch_msa/tools/magus/align/merge/graph_build/graph_builder.py' 2024-01-25T07:14:23,266 adding 'witch_msa/tools/magus/align/merge/graph_cluster/__init__.py' 2024-01-25T07:14:23,267 adding 'witch_msa/tools/magus/align/merge/graph_cluster/clean_clusters.py' 2024-01-25T07:14:23,269 adding 'witch_msa/tools/magus/align/merge/graph_cluster/clusterer.py' 2024-01-25T07:14:23,270 adding 'witch_msa/tools/magus/align/merge/graph_cluster/mcl.py' 2024-01-25T07:14:23,271 adding 'witch_msa/tools/magus/align/merge/graph_cluster/mlr_mcl.py' 2024-01-25T07:14:23,272 adding 'witch_msa/tools/magus/align/merge/graph_cluster/rg.py' 2024-01-25T07:14:23,274 adding 'witch_msa/tools/magus/align/merge/graph_trace/__init__.py' 2024-01-25T07:14:23,276 adding 'witch_msa/tools/magus/align/merge/graph_trace/fm.py' 2024-01-25T07:14:23,277 adding 'witch_msa/tools/magus/align/merge/graph_trace/min_clusters.py' 2024-01-25T07:14:23,280 adding 'witch_msa/tools/magus/align/merge/graph_trace/mwt_search.py' 2024-01-25T07:14:23,281 adding 'witch_msa/tools/magus/align/merge/graph_trace/naive.py' 2024-01-25T07:14:23,282 adding 'witch_msa/tools/magus/align/merge/graph_trace/rg_fast_search.py' 2024-01-25T07:14:23,284 adding 'witch_msa/tools/magus/align/merge/graph_trace/rg_search.py' 2024-01-25T07:14:23,285 adding 'witch_msa/tools/magus/align/merge/graph_trace/tracer.py' 2024-01-25T07:14:23,287 adding 'witch_msa/tools/magus/helpers/__init__.py' 2024-01-25T07:14:23,288 adding 'witch_msa/tools/magus/helpers/hmmutils.py' 2024-01-25T07:14:23,290 adding 'witch_msa/tools/magus/helpers/sequenceutils.py' 2024-01-25T07:14:23,292 adding 'witch_msa/tools/magus/helpers/treeutils.py' 2024-01-25T07:14:23,293 adding 'witch_msa/tools/magus/tasks/__init__.py' 2024-01-25T07:14:23,295 adding 'witch_msa/tools/magus/tasks/controller.py' 2024-01-25T07:14:23,296 adding 'witch_msa/tools/magus/tasks/files.py' 2024-01-25T07:14:23,298 adding 'witch_msa/tools/magus/tasks/manager.py' 2024-01-25T07:14:23,299 adding 'witch_msa/tools/magus/tasks/task.py' 2024-01-25T07:14:23,301 adding 'witch_msa/tools/magus/tools/__init__.py' 2024-01-25T07:14:23,302 adding 'witch_msa/tools/magus/tools/external_tools.py' 2024-01-25T07:14:24,112 adding 'witch_msa/tools/magus/tools/clustal/clustalo' 2024-01-25T07:14:24,210 adding 'witch_msa/tools/magus/tools/fasttree/FastTree' 2024-01-25T07:14:24,282 adding 'witch_msa/tools/magus/tools/fasttree/FastTreeMP' 2024-01-25T07:14:24,490 adding 'witch_msa/tools/magus/tools/hmmer/hmmalign' 2024-01-25T07:14:24,713 adding 'witch_msa/tools/magus/tools/hmmer/hmmbuild' 2024-01-25T07:14:24,956 adding 'witch_msa/tools/magus/tools/hmmer/hmmsearch' 2024-01-25T07:14:24,967 adding 'witch_msa/tools/magus/tools/mafft/mafft' 2024-01-25T07:14:24,978 adding 'witch_msa/tools/magus/tools/mafft/mafftdir/bin/mafft' 2024-01-25T07:14:25,230 adding 'witch_msa/tools/magus/tools/mafft/mafftdir/libexec/addsingle' 2024-01-25T07:14:25,409 adding 'witch_msa/tools/magus/tools/mafft/mafftdir/libexec/contrafoldwrap' 2024-01-25T07:14:25,533 adding 'witch_msa/tools/magus/tools/mafft/mafftdir/libexec/countlen' 2024-01-25T07:14:26,345 adding 'witch_msa/tools/magus/tools/mafft/mafftdir/libexec/dash_client' 2024-01-25T07:14:26,626 adding 'witch_msa/tools/magus/tools/mafft/mafftdir/libexec/disttbfast' 2024-01-25T07:14:26,806 adding 'witch_msa/tools/magus/tools/mafft/mafftdir/libexec/dndblast' 2024-01-25T07:14:26,985 adding 'witch_msa/tools/magus/tools/mafft/mafftdir/libexec/dndfast7' 2024-01-25T07:14:27,162 adding 'witch_msa/tools/magus/tools/mafft/mafftdir/libexec/dndpre' 2024-01-25T07:14:27,412 adding 'witch_msa/tools/magus/tools/mafft/mafftdir/libexec/dvtditr' 2024-01-25T07:14:27,553 adding 'witch_msa/tools/magus/tools/mafft/mafftdir/libexec/f2cl' 2024-01-25T07:14:27,787 adding 'witch_msa/tools/magus/tools/mafft/mafftdir/libexec/getlag' 2024-01-25T07:14:27,898 adding 'witch_msa/tools/magus/tools/mafft/mafftdir/libexec/hex2maffttext' 2024-01-25T07:14:28,075 adding 'witch_msa/tools/magus/tools/mafft/mafftdir/libexec/mafft-distance' 2024-01-25T07:14:28,082 adding 'witch_msa/tools/magus/tools/mafft/mafftdir/libexec/mafft-homologs.1' 2024-01-25T07:14:28,312 adding 'witch_msa/tools/magus/tools/mafft/mafftdir/libexec/mafft-profile' 2024-01-25T07:14:28,322 adding 'witch_msa/tools/magus/tools/mafft/mafftdir/libexec/mafft.1' 2024-01-25T07:14:28,324 adding 'witch_msa/tools/magus/tools/mafft/mafftdir/libexec/mafftash_premafft.pl' 2024-01-25T07:14:28,428 adding 'witch_msa/tools/magus/tools/mafft/mafftdir/libexec/maffttext2hex' 2024-01-25T07:14:28,665 adding 'witch_msa/tools/magus/tools/mafft/mafftdir/libexec/makedirectionlist' 2024-01-25T07:14:28,843 adding 'witch_msa/tools/magus/tools/mafft/mafftdir/libexec/mccaskillwrap' 2024-01-25T07:14:29,032 adding 'witch_msa/tools/magus/tools/mafft/mafftdir/libexec/multi2hat3s' 2024-01-25T07:14:29,279 adding 'witch_msa/tools/magus/tools/mafft/mafftdir/libexec/nodepair' 2024-01-25T07:14:29,518 adding 'witch_msa/tools/magus/tools/mafft/mafftdir/libexec/pairash' 2024-01-25T07:14:29,762 adding 'witch_msa/tools/magus/tools/mafft/mafftdir/libexec/pairlocalalign' 2024-01-25T07:14:29,931 adding 'witch_msa/tools/magus/tools/mafft/mafftdir/libexec/regtable2seq' 2024-01-25T07:14:30,097 adding 'witch_msa/tools/magus/tools/mafft/mafftdir/libexec/replaceu' 2024-01-25T07:14:30,265 adding 'witch_msa/tools/magus/tools/mafft/mafftdir/libexec/restoreu' 2024-01-25T07:14:30,440 adding 'witch_msa/tools/magus/tools/mafft/mafftdir/libexec/score' 2024-01-25T07:14:30,448 adding 'witch_msa/tools/magus/tools/mafft/mafftdir/libexec/seekquencer_premafft.pl' 2024-01-25T07:14:30,567 adding 'witch_msa/tools/magus/tools/mafft/mafftdir/libexec/seq2regtable' 2024-01-25T07:14:30,801 adding 'witch_msa/tools/magus/tools/mafft/mafftdir/libexec/setcore' 2024-01-25T07:14:30,970 adding 'witch_msa/tools/magus/tools/mafft/mafftdir/libexec/setdirection' 2024-01-25T07:14:31,148 adding 'witch_msa/tools/magus/tools/mafft/mafftdir/libexec/sextet5' 2024-01-25T07:14:31,389 adding 'witch_msa/tools/magus/tools/mafft/mafftdir/libexec/splittbfast' 2024-01-25T07:14:31,647 adding 'witch_msa/tools/magus/tools/mafft/mafftdir/libexec/tbfast' 2024-01-25T07:14:31,759 adding 'witch_msa/tools/magus/tools/mafft/mafftdir/libexec/version' 2024-01-25T07:14:32,017 adding 'witch_msa/tools/magus/tools/mcl/bin/clm' 2024-01-25T07:14:32,247 adding 'witch_msa/tools/magus/tools/mcl/bin/clmformat' 2024-01-25T07:14:32,256 adding 'witch_msa/tools/magus/tools/mcl/bin/clxdo' 2024-01-25T07:14:32,460 adding 'witch_msa/tools/magus/tools/mcl/bin/mcl' 2024-01-25T07:14:32,469 adding 'witch_msa/tools/magus/tools/mcl/bin/mclblastline' 2024-01-25T07:14:32,681 adding 'witch_msa/tools/magus/tools/mcl/bin/mclcm' 2024-01-25T07:14:32,691 adding 'witch_msa/tools/magus/tools/mcl/bin/mclpipeline' 2024-01-25T07:14:32,946 adding 'witch_msa/tools/magus/tools/mcl/bin/mcx' 2024-01-25T07:14:33,172 adding 'witch_msa/tools/magus/tools/mcl/bin/mcxarray' 2024-01-25T07:14:33,384 adding 'witch_msa/tools/magus/tools/mcl/bin/mcxassemble' 2024-01-25T07:14:33,394 adding 'witch_msa/tools/magus/tools/mcl/bin/mcxdeblast' 2024-01-25T07:14:33,600 adding 'witch_msa/tools/magus/tools/mcl/bin/mcxdump' 2024-01-25T07:14:33,833 adding 'witch_msa/tools/magus/tools/mcl/bin/mcxi' 2024-01-25T07:14:34,048 adding 'witch_msa/tools/magus/tools/mcl/bin/mcxload' 2024-01-25T07:14:34,178 adding 'witch_msa/tools/magus/tools/mcl/bin/mcxmap' 2024-01-25T07:14:34,310 adding 'witch_msa/tools/magus/tools/mcl/bin/mcxrand' 2024-01-25T07:14:34,536 adding 'witch_msa/tools/magus/tools/mcl/bin/mcxsubs' 2024-01-25T07:14:34,546 adding 'witch_msa/tools/magus/tools/mlrmcl/README' 2024-01-25T07:14:34,567 adding 'witch_msa/tools/magus/tools/mlrmcl/mlrmcl' 2024-01-25T07:14:34,587 adding 'witch_msa/tools/magus/tools/mlrmcl/ncut' 2024-01-25T07:14:35,778 adding 'witch_msa/tools/magus/tools/raxmlng/raxml-ng' 2024-01-25T07:14:35,821 adding 'witch_msa-1.0.4.data/scripts/witch-msa' 2024-01-25T07:14:35,822 adding 'witch_msa-1.0.4.data/scripts/witch.py' 2024-01-25T07:14:35,829 adding 'witch_msa-1.0.4.dist-info/LICENSE' 2024-01-25T07:14:35,837 adding 'witch_msa-1.0.4.dist-info/METADATA' 2024-01-25T07:14:35,838 adding 'witch_msa-1.0.4.dist-info/WHEEL' 2024-01-25T07:14:35,839 adding 'witch_msa-1.0.4.dist-info/top_level.txt' 2024-01-25T07:14:35,842 adding 'witch_msa-1.0.4.dist-info/RECORD' 2024-01-25T07:14:36,178 removing build/bdist.linux-armv7l/wheel 2024-01-25T07:14:36,358 Building wheel for witch-msa (pyproject.toml): finished with status 'done' 2024-01-25T07:14:36,957 Created wheel for witch-msa: filename=witch_msa-1.0.4-py3-none-any.whl size=29118286 sha256=edb4cca89b7eb7c495adaaf1863e0d0e848aa68a9edfc5bd8716b09fed076851 2024-01-25T07:14:36,958 Stored in directory: /tmp/pip-ephem-wheel-cache-t5asnezs/wheels/34/1c/44/58999d75ab99c44b66958150bb9514a8d292d52d1e191f32dc 2024-01-25T07:14:37,006 Successfully built witch-msa 2024-01-25T07:14:37,704 Removed build tracker: '/tmp/pip-build-tracker-i235kr6a'