2024-01-25T19:03:35,292 Created temporary directory: /tmp/pip-build-tracker-ot4in0v7 2024-01-25T19:03:35,293 Initialized build tracking at /tmp/pip-build-tracker-ot4in0v7 2024-01-25T19:03:35,294 Created build tracker: /tmp/pip-build-tracker-ot4in0v7 2024-01-25T19:03:35,294 Entered build tracker: /tmp/pip-build-tracker-ot4in0v7 2024-01-25T19:03:35,295 Created temporary directory: /tmp/pip-wheel-i7pkd5wc 2024-01-25T19:03:35,298 Created temporary directory: /tmp/pip-ephem-wheel-cache-4mrj70f8 2024-01-25T19:03:35,320 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-25T19:03:35,324 2 location(s) to search for versions of sigprofilerassignment: 2024-01-25T19:03:35,324 * https://pypi.org/simple/sigprofilerassignment/ 2024-01-25T19:03:35,324 * https://www.piwheels.org/simple/sigprofilerassignment/ 2024-01-25T19:03:35,325 Fetching project page and analyzing links: https://pypi.org/simple/sigprofilerassignment/ 2024-01-25T19:03:35,325 Getting page https://pypi.org/simple/sigprofilerassignment/ 2024-01-25T19:03:35,327 Found index url https://pypi.org/simple/ 2024-01-25T19:03:35,543 Fetched page https://pypi.org/simple/sigprofilerassignment/ as application/vnd.pypi.simple.v1+json 2024-01-25T19:03:35,555 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/eb/80/f1205274c434ee073d26adb94743b425d82a6fbbb3d5445454139f8e095e/SigProfilerAssignment-0.0.2-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2024-01-25T19:03:35,556 Found link https://files.pythonhosted.org/packages/cd/7f/d5949b0e1a6099a309d6c3cf5e7da3eecc22fdab13d7fbccf91fc5455bbc/SigProfilerAssignment-0.0.2.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.2 2024-01-25T19:03:35,557 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/d4/0a/3ec44d6d52bb12aeed9b8190f3c556bf85bacdf54f26d8458eb80b184219/SigProfilerAssignment-0.0.3-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2024-01-25T19:03:35,557 Found link https://files.pythonhosted.org/packages/bc/57/ce6cc7421edcd9dbc25fd065ada3876b40244852290c9cf852e6dd3e2180/SigProfilerAssignment-0.0.3.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.3 2024-01-25T19:03:35,558 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/76/13/620a464927e43c92d18e9949938f6b41b14d7111cded624096a02d9b81cc/SigProfilerAssignment-0.0.4-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2024-01-25T19:03:35,559 Found link https://files.pythonhosted.org/packages/8f/9e/8b7673ac9751acd9f82716b4299c155c2152bc26e32925bd5463d9c70800/SigProfilerAssignment-0.0.4.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.4 2024-01-25T19:03:35,560 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/9d/56/1968aaf35ec8597df716ebb6c5cbca6a61892f8a293150f312985a500231/SigProfilerAssignment-0.0.5-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2024-01-25T19:03:35,561 Found link https://files.pythonhosted.org/packages/79/c4/ed14da5d80f43e136c7638db1341dda950f510b9e283f3233a8aa7aabf32/SigProfilerAssignment-0.0.5.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.5 2024-01-25T19:03:35,561 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/66/ab/85f6ffb88701a726aa49666e007b52dbd3de21f036a6b8c2ebdeb9f1e462/SigProfilerAssignment-0.0.6-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2024-01-25T19:03:35,562 Found link 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2024-01-25T19:03:35,569 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/5d/97/1b9875b256bc8e72bf1d7ba5025d6fcef5ba852f8332249d7f1c2ca4cdbb/SigProfilerAssignment-0.0.12-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2024-01-25T19:03:35,570 Found link https://files.pythonhosted.org/packages/28/37/2ec84d1c1ad80c2a61214e735ae775d41a35ef5af4c79fbfc1a304003819/SigProfilerAssignment-0.0.12.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.12 2024-01-25T19:03:35,571 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/7a/8e/e93001206882013104acbe9fbc9ee58b4422d73e080574da3e317e6c48d4/SigProfilerAssignment-0.0.13-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2024-01-25T19:03:35,571 Found link 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2024-01-25T19:03:35,578 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/57/a1/2d3eb976254038c00cb1c0648a1c56f9e6ad8ad9c9cc93181fc2cc664856/SigProfilerAssignment-0.0.19-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2024-01-25T19:03:35,579 Found link https://files.pythonhosted.org/packages/28/3d/2a9f0503683f6d76d3e27050419679b185d3ad767a4faef2c9281dd91aff/SigProfilerAssignment-0.0.19.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.19 2024-01-25T19:03:35,579 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/26/6d/e259131d359a7eafc0a850674198cdc19e78dc27d014678965d9b2435675/SigProfilerAssignment-0.0.20-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2024-01-25T19:03:35,580 Found link 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https://files.pythonhosted.org/packages/d5/88/7e17aa3c8232099c379d07f51c4ac7ad1694125403a23fb77c2501e25c49/SigProfilerAssignment-0.0.31-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2024-01-25T19:03:35,594 Found link https://files.pythonhosted.org/packages/e3/53/7a29cc2cbeb53edd8e3f5f97d32779882b48c1f59b21d2fcc792a0ddaf55/SigProfilerAssignment-0.0.31.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.31 2024-01-25T19:03:35,595 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/32/db/088602b559a61dbc9b370c4e90dfcbab426e403ce631fb4ebd0766a40f4e/SigProfilerAssignment-0.0.32-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2024-01-25T19:03:35,596 Found link https://files.pythonhosted.org/packages/47/25/a5b3f4c8d68565857e55a22d2d5533497b8d5368e8de583ac856ae738d8a/SigProfilerAssignment-0.0.32.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.32 2024-01-25T19:03:35,596 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/01/94/b600290dea721be9964bbd5123990f9fdac109538351321aeae2220d2f32/SigProfilerAssignment-0.0.33-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2024-01-25T19:03:35,597 Found link https://files.pythonhosted.org/packages/bd/c0/6258266e1cfa68cabaa2ea606b6ee74290d8dc70b1bb17ff7fac6ec85103/SigProfilerAssignment-0.0.33.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.33 2024-01-25T19:03:35,597 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/54/3b/804d975db2e6eeb743bb23091ca0febb22328b255ff0a4917252efb9628e/SigProfilerAssignment-0.1.0-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2024-01-25T19:03:35,598 Found link https://files.pythonhosted.org/packages/af/fb/e1dc6d89cf5753a64ba91adb630b2b299ee5849056318d44e1e357de8780/SigProfilerAssignment-0.1.0.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.1.0 2024-01-25T19:03:35,599 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/9f/08/fe4383ee580e18a34271be597b35959152502d4d4faf4df58a7a80ede5a8/SigProfilerAssignment-0.1.1-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2024-01-25T19:03:35,600 Found link https://files.pythonhosted.org/packages/7f/7f/6ec76f934311e97bb2fc3f3c578cc3ec6fd15383a5c0ae3bb6f92f4bccfa/SigProfilerAssignment-0.1.1.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.1.1 2024-01-25T19:03:35,600 Fetching project page and analyzing links: https://www.piwheels.org/simple/sigprofilerassignment/ 2024-01-25T19:03:35,601 Getting page https://www.piwheels.org/simple/sigprofilerassignment/ 2024-01-25T19:03:35,602 Found index url https://www.piwheels.org/simple/ 2024-01-25T19:03:35,753 Fetched page https://www.piwheels.org/simple/sigprofilerassignment/ as text/html 2024-01-25T19:03:35,762 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.1.0-py3-none-any.whl#sha256=1505d9679fa93bf5dd68deeaa1792f0c0437991a5d4fd1ffdce7701b554452e9 (from https://www.piwheels.org/simple/sigprofilerassignment/) 2024-01-25T19:03:35,763 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.33-py3-none-any.whl#sha256=9280531891ca6ed44a811f231aec0cd1c044f58a7b22e7d66f6e8ff3dce066bc (from https://www.piwheels.org/simple/sigprofilerassignment/) 2024-01-25T19:03:35,764 Skipping link: No binaries permitted for sigprofilerassignment: 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https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.2-py3-none-any.whl#sha256=6b7c937475ced548e412ca91f1beb750ce7d02abc32ad0a1e1d985353c562bae (from https://www.piwheels.org/simple/sigprofilerassignment/) 2024-01-25T19:03:35,783 Skipping link: not a file: https://www.piwheels.org/simple/sigprofilerassignment/ 2024-01-25T19:03:35,784 Skipping link: not a file: https://pypi.org/simple/sigprofilerassignment/ 2024-01-25T19:03:35,806 Given no hashes to check 1 links for project 'sigprofilerassignment': discarding no candidates 2024-01-25T19:03:35,824 Collecting sigprofilerassignment==0.1.1 2024-01-25T19:03:35,826 Created temporary directory: /tmp/pip-unpack-tst4hajq 2024-01-25T19:03:35,964 Downloading SigProfilerAssignment-0.1.1.tar.gz (5.4 MB) 2024-01-25T19:03:37,305 Added sigprofilerassignment==0.1.1 from https://files.pythonhosted.org/packages/7f/7f/6ec76f934311e97bb2fc3f3c578cc3ec6fd15383a5c0ae3bb6f92f4bccfa/SigProfilerAssignment-0.1.1.tar.gz to build tracker '/tmp/pip-build-tracker-ot4in0v7' 2024-01-25T19:03:37,307 Running setup.py (path:/tmp/pip-wheel-i7pkd5wc/sigprofilerassignment_00f55b922a0e4c328c1e0b31303a34bb/setup.py) egg_info for package sigprofilerassignment 2024-01-25T19:03:37,308 Created temporary directory: /tmp/pip-pip-egg-info-_e5j3ug4 2024-01-25T19:03:37,309 Preparing metadata (setup.py): started 2024-01-25T19:03:37,310 Running command python setup.py egg_info 2024-01-25T19:03:38,302 running egg_info 2024-01-25T19:03:38,303 creating /tmp/pip-pip-egg-info-_e5j3ug4/SigProfilerAssignment.egg-info 2024-01-25T19:03:38,327 writing /tmp/pip-pip-egg-info-_e5j3ug4/SigProfilerAssignment.egg-info/PKG-INFO 2024-01-25T19:03:38,331 writing dependency_links to /tmp/pip-pip-egg-info-_e5j3ug4/SigProfilerAssignment.egg-info/dependency_links.txt 2024-01-25T19:03:38,333 writing requirements to /tmp/pip-pip-egg-info-_e5j3ug4/SigProfilerAssignment.egg-info/requires.txt 2024-01-25T19:03:38,334 writing top-level names to /tmp/pip-pip-egg-info-_e5j3ug4/SigProfilerAssignment.egg-info/top_level.txt 2024-01-25T19:03:38,336 writing manifest file '/tmp/pip-pip-egg-info-_e5j3ug4/SigProfilerAssignment.egg-info/SOURCES.txt' 2024-01-25T19:03:38,412 reading manifest file '/tmp/pip-pip-egg-info-_e5j3ug4/SigProfilerAssignment.egg-info/SOURCES.txt' 2024-01-25T19:03:38,413 reading manifest template 'MANIFEST.in' 2024-01-25T19:03:38,428 adding license file 'LICENSE.txt' 2024-01-25T19:03:38,435 writing manifest file '/tmp/pip-pip-egg-info-_e5j3ug4/SigProfilerAssignment.egg-info/SOURCES.txt' 2024-01-25T19:03:38,544 Preparing metadata (setup.py): finished with status 'done' 2024-01-25T19:03:38,548 Source in /tmp/pip-wheel-i7pkd5wc/sigprofilerassignment_00f55b922a0e4c328c1e0b31303a34bb has version 0.1.1, which satisfies requirement sigprofilerassignment==0.1.1 from https://files.pythonhosted.org/packages/7f/7f/6ec76f934311e97bb2fc3f3c578cc3ec6fd15383a5c0ae3bb6f92f4bccfa/SigProfilerAssignment-0.1.1.tar.gz 2024-01-25T19:03:38,549 Removed sigprofilerassignment==0.1.1 from https://files.pythonhosted.org/packages/7f/7f/6ec76f934311e97bb2fc3f3c578cc3ec6fd15383a5c0ae3bb6f92f4bccfa/SigProfilerAssignment-0.1.1.tar.gz from build tracker '/tmp/pip-build-tracker-ot4in0v7' 2024-01-25T19:03:38,555 Created temporary directory: /tmp/pip-unpack-srvgczzk 2024-01-25T19:03:38,556 Created temporary directory: /tmp/pip-unpack-i6dx_uo5 2024-01-25T19:03:38,576 Building wheels for collected packages: sigprofilerassignment 2024-01-25T19:03:38,581 Created temporary directory: /tmp/pip-wheel-jmk_guv2 2024-01-25T19:03:38,581 Building wheel for sigprofilerassignment (setup.py): started 2024-01-25T19:03:38,582 Destination directory: /tmp/pip-wheel-jmk_guv2 2024-01-25T19:03:38,583 Running command python setup.py bdist_wheel 2024-01-25T19:03:39,582 running bdist_wheel 2024-01-25T19:03:39,679 running build 2024-01-25T19:03:39,679 running build_py 2024-01-25T19:03:39,706 creating build 2024-01-25T19:03:39,707 creating build/lib 2024-01-25T19:03:39,708 creating build/lib/SigProfilerAssignment 2024-01-25T19:03:39,709 copying SigProfilerAssignment/version.py -> build/lib/SigProfilerAssignment 2024-01-25T19:03:39,712 copying SigProfilerAssignment/Analyzer.py -> build/lib/SigProfilerAssignment 2024-01-25T19:03:39,714 copying SigProfilerAssignment/single_sample.py -> build/lib/SigProfilerAssignment 2024-01-25T19:03:39,717 copying SigProfilerAssignment/decompose_subroutines.py -> build/lib/SigProfilerAssignment 2024-01-25T19:03:39,720 copying SigProfilerAssignment/decomposition.py -> build/lib/SigProfilerAssignment 2024-01-25T19:03:39,723 copying SigProfilerAssignment/__init__.py -> build/lib/SigProfilerAssignment 2024-01-25T19:03:39,724 running egg_info 2024-01-25T19:03:39,779 writing SigProfilerAssignment.egg-info/PKG-INFO 2024-01-25T19:03:39,783 writing dependency_links to SigProfilerAssignment.egg-info/dependency_links.txt 2024-01-25T19:03:39,785 writing requirements to SigProfilerAssignment.egg-info/requires.txt 2024-01-25T19:03:39,786 writing top-level names to SigProfilerAssignment.egg-info/top_level.txt 2024-01-25T19:03:39,813 reading manifest file 'SigProfilerAssignment.egg-info/SOURCES.txt' 2024-01-25T19:03:39,819 reading manifest template 'MANIFEST.in' 2024-01-25T19:03:39,828 adding license file 'LICENSE.txt' 2024-01-25T19:03:39,838 writing manifest file 'SigProfilerAssignment.egg-info/SOURCES.txt' 2024-01-25T19:03:39,841 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'SigProfilerAssignment.DecompositionPlots' is absent from the `packages` configuration. 2024-01-25T19:03:39,842 !! 2024-01-25T19:03:39,843 ******************************************************************************** 2024-01-25T19:03:39,844 ############################ 2024-01-25T19:03:39,844 # Package would be ignored # 2024-01-25T19:03:39,845 ############################ 2024-01-25T19:03:39,846 Python recognizes 'SigProfilerAssignment.DecompositionPlots' as an importable package[^1], 2024-01-25T19:03:39,846 but it is absent from setuptools' `packages` configuration. 2024-01-25T19:03:39,848 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-25T19:03:39,848 package, please make sure that 'SigProfilerAssignment.DecompositionPlots' is explicitly added 2024-01-25T19:03:39,849 to the `packages` configuration field. 2024-01-25T19:03:39,850 Alternatively, you can also rely on setuptools' discovery methods 2024-01-25T19:03:39,850 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-25T19:03:39,851 instead of `find_packages(...)`/`find:`). 2024-01-25T19:03:39,851 You can read more about "package discovery" on setuptools documentation page: 2024-01-25T19:03:39,852 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-25T19:03:39,853 If you don't want 'SigProfilerAssignment.DecompositionPlots' to be distributed and are 2024-01-25T19:03:39,854 already explicitly excluding 'SigProfilerAssignment.DecompositionPlots' via 2024-01-25T19:03:39,854 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-25T19:03:39,855 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-25T19:03:39,855 combination with a more fine grained `package-data` configuration. 2024-01-25T19:03:39,856 You can read more about "package data files" on setuptools documentation page: 2024-01-25T19:03:39,857 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-25T19:03:39,858 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-25T19:03:39,859 even if it does not contain any `.py` files. 2024-01-25T19:03:39,859 On the other hand, currently there is no concept of package data 2024-01-25T19:03:39,860 directory, all directories are treated like packages. 2024-01-25T19:03:39,860 ******************************************************************************** 2024-01-25T19:03:39,862 !! 2024-01-25T19:03:39,862 check.warn(importable) 2024-01-25T19:03:39,863 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' is absent from the `packages` configuration. 2024-01-25T19:03:39,864 !! 2024-01-25T19:03:39,865 ******************************************************************************** 2024-01-25T19:03:39,866 ############################ 2024-01-25T19:03:39,866 # Package would be ignored # 2024-01-25T19:03:39,867 ############################ 2024-01-25T19:03:39,868 Python recognizes 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' as an importable package[^1], 2024-01-25T19:03:39,869 but it is absent from setuptools' `packages` configuration. 2024-01-25T19:03:39,870 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-25T19:03:39,870 package, please make sure that 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' is explicitly added 2024-01-25T19:03:39,871 to the `packages` configuration field. 2024-01-25T19:03:39,872 Alternatively, you can also rely on setuptools' discovery methods 2024-01-25T19:03:39,873 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-25T19:03:39,873 instead of `find_packages(...)`/`find:`). 2024-01-25T19:03:39,874 You can read more about "package discovery" on setuptools documentation page: 2024-01-25T19:03:39,876 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-25T19:03:39,877 If you don't want 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' to be distributed and are 2024-01-25T19:03:39,877 already explicitly excluding 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' via 2024-01-25T19:03:39,878 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-25T19:03:39,879 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-25T19:03:39,880 combination with a more fine grained `package-data` configuration. 2024-01-25T19:03:39,881 You can read more about "package data files" on setuptools documentation page: 2024-01-25T19:03:39,882 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-25T19:03:39,883 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-25T19:03:39,883 even if it does not contain any `.py` files. 2024-01-25T19:03:39,884 On the other hand, currently there is no concept of package data 2024-01-25T19:03:39,885 directory, all directories are treated like packages. 2024-01-25T19:03:39,885 ******************************************************************************** 2024-01-25T19:03:39,886 !! 2024-01-25T19:03:39,887 check.warn(importable) 2024-01-25T19:03:39,887 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' is absent from the `packages` configuration. 2024-01-25T19:03:39,888 !! 2024-01-25T19:03:39,889 ******************************************************************************** 2024-01-25T19:03:39,889 ############################ 2024-01-25T19:03:39,890 # Package would be ignored # 2024-01-25T19:03:39,890 ############################ 2024-01-25T19:03:39,892 Python recognizes 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' as an importable package[^1], 2024-01-25T19:03:39,893 but it is absent from setuptools' `packages` configuration. 2024-01-25T19:03:39,894 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-25T19:03:39,895 package, please make sure that 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' is explicitly added 2024-01-25T19:03:39,895 to the `packages` configuration field. 2024-01-25T19:03:39,897 Alternatively, you can also rely on setuptools' discovery methods 2024-01-25T19:03:39,897 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-25T19:03:39,898 instead of `find_packages(...)`/`find:`). 2024-01-25T19:03:39,899 You can read more about "package discovery" on setuptools documentation page: 2024-01-25T19:03:39,900 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-25T19:03:39,901 If you don't want 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' to be distributed and are 2024-01-25T19:03:39,902 already explicitly excluding 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' via 2024-01-25T19:03:39,902 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-25T19:03:39,903 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-25T19:03:39,903 combination with a more fine grained `package-data` configuration. 2024-01-25T19:03:39,904 You can read more about "package data files" on setuptools documentation page: 2024-01-25T19:03:39,906 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-25T19:03:39,907 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-25T19:03:39,908 even if it does not contain any `.py` files. 2024-01-25T19:03:39,909 On the other hand, currently there is no concept of package data 2024-01-25T19:03:39,910 directory, all directories are treated like packages. 2024-01-25T19:03:39,911 ******************************************************************************** 2024-01-25T19:03:39,912 !! 2024-01-25T19:03:39,913 check.warn(importable) 2024-01-25T19:03:39,914 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'SigProfilerAssignment.data' is absent from the `packages` configuration. 2024-01-25T19:03:39,915 !! 2024-01-25T19:03:39,916 ******************************************************************************** 2024-01-25T19:03:39,917 ############################ 2024-01-25T19:03:39,918 # Package would be ignored # 2024-01-25T19:03:39,919 ############################ 2024-01-25T19:03:39,919 Python recognizes 'SigProfilerAssignment.data' as an importable package[^1], 2024-01-25T19:03:39,920 but it is absent from setuptools' `packages` configuration. 2024-01-25T19:03:39,922 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-25T19:03:39,923 package, please make sure that 'SigProfilerAssignment.data' is explicitly added 2024-01-25T19:03:39,923 to the `packages` configuration field. 2024-01-25T19:03:39,925 Alternatively, you can also rely on setuptools' discovery methods 2024-01-25T19:03:39,925 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-25T19:03:39,926 instead of `find_packages(...)`/`find:`). 2024-01-25T19:03:39,927 You can read more about "package discovery" on setuptools documentation page: 2024-01-25T19:03:39,928 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-25T19:03:39,929 If you don't want 'SigProfilerAssignment.data' to be distributed and are 2024-01-25T19:03:39,929 already explicitly excluding 'SigProfilerAssignment.data' via 2024-01-25T19:03:39,930 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-25T19:03:39,930 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-25T19:03:39,931 combination with a more fine grained `package-data` configuration. 2024-01-25T19:03:39,932 You can read more about "package data files" on setuptools documentation page: 2024-01-25T19:03:39,933 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-25T19:03:39,935 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-25T19:03:39,935 even if it does not contain any `.py` files. 2024-01-25T19:03:39,936 On the other hand, currently there is no concept of package data 2024-01-25T19:03:39,936 directory, all directories are treated like packages. 2024-01-25T19:03:39,937 ******************************************************************************** 2024-01-25T19:03:39,938 !! 2024-01-25T19:03:39,938 check.warn(importable) 2024-01-25T19:03:39,939 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' is absent from the `packages` configuration. 2024-01-25T19:03:39,939 !! 2024-01-25T19:03:39,940 ******************************************************************************** 2024-01-25T19:03:39,941 ############################ 2024-01-25T19:03:39,942 # Package would be ignored # 2024-01-25T19:03:39,943 ############################ 2024-01-25T19:03:39,943 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' as an importable package[^1], 2024-01-25T19:03:39,944 but it is absent from setuptools' `packages` configuration. 2024-01-25T19:03:39,945 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-25T19:03:39,946 package, please make sure that 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' is explicitly added 2024-01-25T19:03:39,946 to the `packages` configuration field. 2024-01-25T19:03:39,948 Alternatively, you can also rely on setuptools' discovery methods 2024-01-25T19:03:39,948 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-25T19:03:39,949 instead of `find_packages(...)`/`find:`). 2024-01-25T19:03:39,951 You can read more about "package discovery" on setuptools documentation page: 2024-01-25T19:03:39,952 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-25T19:03:39,954 If you don't want 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' to be distributed and are 2024-01-25T19:03:39,955 already explicitly excluding 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' via 2024-01-25T19:03:39,956 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-25T19:03:39,956 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-25T19:03:39,957 combination with a more fine grained `package-data` configuration. 2024-01-25T19:03:39,958 You can read more about "package data files" on setuptools documentation page: 2024-01-25T19:03:39,959 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-25T19:03:39,961 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-25T19:03:39,961 even if it does not contain any `.py` files. 2024-01-25T19:03:39,962 On the other hand, currently there is no concept of package data 2024-01-25T19:03:39,962 directory, all directories are treated like packages. 2024-01-25T19:03:39,963 ******************************************************************************** 2024-01-25T19:03:39,964 !! 2024-01-25T19:03:39,964 check.warn(importable) 2024-01-25T19:03:39,965 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' is absent from the `packages` configuration. 2024-01-25T19:03:39,965 !! 2024-01-25T19:03:39,966 ******************************************************************************** 2024-01-25T19:03:39,967 ############################ 2024-01-25T19:03:39,967 # Package would be ignored # 2024-01-25T19:03:39,968 ############################ 2024-01-25T19:03:39,968 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' as an importable package[^1], 2024-01-25T19:03:39,969 but it is absent from setuptools' `packages` configuration. 2024-01-25T19:03:39,970 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-25T19:03:39,971 package, please make sure that 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' is explicitly added 2024-01-25T19:03:39,971 to the `packages` configuration field. 2024-01-25T19:03:39,973 Alternatively, you can also rely on setuptools' discovery methods 2024-01-25T19:03:39,973 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-25T19:03:39,974 instead of `find_packages(...)`/`find:`). 2024-01-25T19:03:39,975 You can read more about "package discovery" on setuptools documentation page: 2024-01-25T19:03:39,976 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-25T19:03:39,977 If you don't want 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' to be distributed and are 2024-01-25T19:03:39,978 already explicitly excluding 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' via 2024-01-25T19:03:39,978 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-25T19:03:39,979 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-25T19:03:39,980 combination with a more fine grained `package-data` configuration. 2024-01-25T19:03:39,981 You can read more about "package data files" on setuptools documentation page: 2024-01-25T19:03:39,982 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-25T19:03:39,984 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-25T19:03:39,984 even if it does not contain any `.py` files. 2024-01-25T19:03:39,985 On the other hand, currently there is no concept of package data 2024-01-25T19:03:39,985 directory, all directories are treated like packages. 2024-01-25T19:03:39,986 ******************************************************************************** 2024-01-25T19:03:39,987 !! 2024-01-25T19:03:39,987 check.warn(importable) 2024-01-25T19:03:39,988 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'SigProfilerAssignment.data.Reference_Signatures.mm10' is absent from the `packages` configuration. 2024-01-25T19:03:39,988 !! 2024-01-25T19:03:39,989 ******************************************************************************** 2024-01-25T19:03:39,990 ############################ 2024-01-25T19:03:39,991 # Package would be ignored # 2024-01-25T19:03:39,991 ############################ 2024-01-25T19:03:39,992 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.mm10' as an importable package[^1], 2024-01-25T19:03:39,992 but it is absent from setuptools' `packages` configuration. 2024-01-25T19:03:39,993 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-25T19:03:39,994 package, please make sure that 'SigProfilerAssignment.data.Reference_Signatures.mm10' is explicitly added 2024-01-25T19:03:39,995 to the `packages` configuration field. 2024-01-25T19:03:39,996 Alternatively, you can also rely on setuptools' discovery methods 2024-01-25T19:03:39,996 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-25T19:03:39,997 instead of `find_packages(...)`/`find:`). 2024-01-25T19:03:39,998 You can read more about "package discovery" on setuptools documentation page: 2024-01-25T19:03:39,999 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-25T19:03:40,000 If you don't want 'SigProfilerAssignment.data.Reference_Signatures.mm10' to be distributed and are 2024-01-25T19:03:40,000 already explicitly excluding 'SigProfilerAssignment.data.Reference_Signatures.mm10' via 2024-01-25T19:03:40,001 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-25T19:03:40,002 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-25T19:03:40,002 combination with a more fine grained `package-data` configuration. 2024-01-25T19:03:40,003 You can read more about "package data files" on setuptools documentation page: 2024-01-25T19:03:40,005 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-25T19:03:40,007 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-25T19:03:40,007 even if it does not contain any `.py` files. 2024-01-25T19:03:40,008 On the other hand, currently there is no concept of package data 2024-01-25T19:03:40,009 directory, all directories are treated like packages. 2024-01-25T19:03:40,009 ******************************************************************************** 2024-01-25T19:03:40,010 !! 2024-01-25T19:03:40,011 check.warn(importable) 2024-01-25T19:03:40,011 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'SigProfilerAssignment.data.Reference_Signatures.mm9' is absent from the `packages` configuration. 2024-01-25T19:03:40,012 !! 2024-01-25T19:03:40,014 ******************************************************************************** 2024-01-25T19:03:40,014 ############################ 2024-01-25T19:03:40,015 # Package would be ignored # 2024-01-25T19:03:40,016 ############################ 2024-01-25T19:03:40,016 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.mm9' as an importable package[^1], 2024-01-25T19:03:40,017 but it is absent from setuptools' `packages` configuration. 2024-01-25T19:03:40,018 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-25T19:03:40,018 package, please make sure that 'SigProfilerAssignment.data.Reference_Signatures.mm9' is explicitly added 2024-01-25T19:03:40,019 to the `packages` configuration field. 2024-01-25T19:03:40,020 Alternatively, you can also rely on setuptools' discovery methods 2024-01-25T19:03:40,020 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-25T19:03:40,021 instead of `find_packages(...)`/`find:`). 2024-01-25T19:03:40,022 You can read more about "package discovery" on setuptools documentation page: 2024-01-25T19:03:40,023 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-25T19:03:40,025 If you don't want 'SigProfilerAssignment.data.Reference_Signatures.mm9' to be distributed and are 2024-01-25T19:03:40,026 already explicitly excluding 'SigProfilerAssignment.data.Reference_Signatures.mm9' via 2024-01-25T19:03:40,027 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-25T19:03:40,028 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-25T19:03:40,029 combination with a more fine grained `package-data` configuration. 2024-01-25T19:03:40,030 You can read more about "package data files" on setuptools documentation page: 2024-01-25T19:03:40,031 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-25T19:03:40,072 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-25T19:03:40,073 even if it does not contain any `.py` files. 2024-01-25T19:03:40,073 On the other hand, currently there is no concept of package data 2024-01-25T19:03:40,074 directory, all directories are treated like packages. 2024-01-25T19:03:40,074 ******************************************************************************** 2024-01-25T19:03:40,075 !! 2024-01-25T19:03:40,076 check.warn(importable) 2024-01-25T19:03:40,077 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'SigProfilerAssignment.data.Reference_Signatures.rn6' is absent from the `packages` configuration. 2024-01-25T19:03:40,078 !! 2024-01-25T19:03:40,079 ******************************************************************************** 2024-01-25T19:03:40,079 ############################ 2024-01-25T19:03:40,080 # Package would be ignored # 2024-01-25T19:03:40,082 ############################ 2024-01-25T19:03:40,083 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.rn6' as an importable package[^1], 2024-01-25T19:03:40,083 but it is absent from setuptools' `packages` configuration. 2024-01-25T19:03:40,085 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-25T19:03:40,085 package, please make sure that 'SigProfilerAssignment.data.Reference_Signatures.rn6' is explicitly added 2024-01-25T19:03:40,086 to the `packages` configuration field. 2024-01-25T19:03:40,087 Alternatively, you can also rely on setuptools' discovery methods 2024-01-25T19:03:40,088 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-25T19:03:40,088 instead of `find_packages(...)`/`find:`). 2024-01-25T19:03:40,089 You can read more about "package discovery" on setuptools documentation page: 2024-01-25T19:03:40,091 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-25T19:03:40,092 If you don't want 'SigProfilerAssignment.data.Reference_Signatures.rn6' to be distributed and are 2024-01-25T19:03:40,092 already explicitly excluding 'SigProfilerAssignment.data.Reference_Signatures.rn6' via 2024-01-25T19:03:40,093 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-25T19:03:40,093 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-25T19:03:40,094 combination with a more fine grained `package-data` configuration. 2024-01-25T19:03:40,095 You can read more about "package data files" on setuptools documentation page: 2024-01-25T19:03:40,095 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-25T19:03:40,097 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-25T19:03:40,098 even if it does not contain any `.py` files. 2024-01-25T19:03:40,098 On the other hand, currently there is no concept of package data 2024-01-25T19:03:40,098 directory, all directories are treated like packages. 2024-01-25T19:03:40,099 ******************************************************************************** 2024-01-25T19:03:40,101 !! 2024-01-25T19:03:40,101 check.warn(importable) 2024-01-25T19:03:40,102 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'SigProfilerAssignment.data.tests.cnv_input' is absent from the `packages` configuration. 2024-01-25T19:03:40,102 !! 2024-01-25T19:03:40,103 ******************************************************************************** 2024-01-25T19:03:40,104 ############################ 2024-01-25T19:03:40,104 # Package would be ignored # 2024-01-25T19:03:40,105 ############################ 2024-01-25T19:03:40,105 Python recognizes 'SigProfilerAssignment.data.tests.cnv_input' as an importable package[^1], 2024-01-25T19:03:40,106 but it is absent from setuptools' `packages` configuration. 2024-01-25T19:03:40,107 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-25T19:03:40,108 package, please make sure that 'SigProfilerAssignment.data.tests.cnv_input' is explicitly added 2024-01-25T19:03:40,108 to the `packages` configuration field. 2024-01-25T19:03:40,109 Alternatively, you can also rely on setuptools' discovery methods 2024-01-25T19:03:40,110 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-25T19:03:40,110 instead of `find_packages(...)`/`find:`). 2024-01-25T19:03:40,111 You can read more about "package discovery" on setuptools documentation page: 2024-01-25T19:03:40,112 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-25T19:03:40,113 If you don't want 'SigProfilerAssignment.data.tests.cnv_input' to be distributed and are 2024-01-25T19:03:40,114 already explicitly excluding 'SigProfilerAssignment.data.tests.cnv_input' via 2024-01-25T19:03:40,114 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-25T19:03:40,115 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-25T19:03:40,115 combination with a more fine grained `package-data` configuration. 2024-01-25T19:03:40,116 You can read more about "package data files" on setuptools documentation page: 2024-01-25T19:03:40,117 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-25T19:03:40,119 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-25T19:03:40,119 even if it does not contain any `.py` files. 2024-01-25T19:03:40,120 On the other hand, currently there is no concept of package data 2024-01-25T19:03:40,120 directory, all directories are treated like packages. 2024-01-25T19:03:40,121 ******************************************************************************** 2024-01-25T19:03:40,122 !! 2024-01-25T19:03:40,123 check.warn(importable) 2024-01-25T19:03:40,123 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'SigProfilerAssignment.data.tests.txt_input' is absent from the `packages` configuration. 2024-01-25T19:03:40,123 !! 2024-01-25T19:03:40,124 ******************************************************************************** 2024-01-25T19:03:40,125 ############################ 2024-01-25T19:03:40,125 # Package would be ignored # 2024-01-25T19:03:40,126 ############################ 2024-01-25T19:03:40,126 Python recognizes 'SigProfilerAssignment.data.tests.txt_input' as an importable package[^1], 2024-01-25T19:03:40,127 but it is absent from setuptools' `packages` configuration. 2024-01-25T19:03:40,128 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-25T19:03:40,128 package, please make sure that 'SigProfilerAssignment.data.tests.txt_input' is explicitly added 2024-01-25T19:03:40,129 to the `packages` configuration field. 2024-01-25T19:03:40,129 Alternatively, you can also rely on setuptools' discovery methods 2024-01-25T19:03:40,130 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-25T19:03:40,130 instead of `find_packages(...)`/`find:`). 2024-01-25T19:03:40,131 You can read more about "package discovery" on setuptools documentation page: 2024-01-25T19:03:40,133 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-25T19:03:40,134 If you don't want 'SigProfilerAssignment.data.tests.txt_input' to be distributed and are 2024-01-25T19:03:40,134 already explicitly excluding 'SigProfilerAssignment.data.tests.txt_input' via 2024-01-25T19:03:40,135 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-25T19:03:40,135 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-25T19:03:40,136 combination with a more fine grained `package-data` configuration. 2024-01-25T19:03:40,137 You can read more about "package data files" on setuptools documentation page: 2024-01-25T19:03:40,138 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-25T19:03:40,139 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-25T19:03:40,140 even if it does not contain any `.py` files. 2024-01-25T19:03:40,140 On the other hand, currently there is no concept of package data 2024-01-25T19:03:40,141 directory, all directories are treated like packages. 2024-01-25T19:03:40,142 ******************************************************************************** 2024-01-25T19:03:40,143 !! 2024-01-25T19:03:40,143 check.warn(importable) 2024-01-25T19:03:40,144 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'SigProfilerAssignment.data.tests.vcf_input' is absent from the `packages` configuration. 2024-01-25T19:03:40,144 !! 2024-01-25T19:03:40,145 ******************************************************************************** 2024-01-25T19:03:40,146 ############################ 2024-01-25T19:03:40,146 # Package would be ignored # 2024-01-25T19:03:40,147 ############################ 2024-01-25T19:03:40,147 Python recognizes 'SigProfilerAssignment.data.tests.vcf_input' as an importable package[^1], 2024-01-25T19:03:40,148 but it is absent from setuptools' `packages` configuration. 2024-01-25T19:03:40,149 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-25T19:03:40,150 package, please make sure that 'SigProfilerAssignment.data.tests.vcf_input' is explicitly added 2024-01-25T19:03:40,151 to the `packages` configuration field. 2024-01-25T19:03:40,152 Alternatively, you can also rely on setuptools' discovery methods 2024-01-25T19:03:40,152 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-25T19:03:40,152 instead of `find_packages(...)`/`find:`). 2024-01-25T19:03:40,153 You can read more about "package discovery" on setuptools documentation page: 2024-01-25T19:03:40,154 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-25T19:03:40,155 If you don't want 'SigProfilerAssignment.data.tests.vcf_input' to be distributed and are 2024-01-25T19:03:40,156 already explicitly excluding 'SigProfilerAssignment.data.tests.vcf_input' via 2024-01-25T19:03:40,156 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-25T19:03:40,157 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-25T19:03:40,158 combination with a more fine grained `package-data` configuration. 2024-01-25T19:03:40,158 You can read more about "package data files" on setuptools documentation page: 2024-01-25T19:03:40,159 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-25T19:03:40,161 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-25T19:03:40,161 even if it does not contain any `.py` files. 2024-01-25T19:03:40,162 On the other hand, currently there is no concept of package data 2024-01-25T19:03:40,162 directory, all directories are treated like packages. 2024-01-25T19:03:40,163 ******************************************************************************** 2024-01-25T19:03:40,164 !! 2024-01-25T19:03:40,164 check.warn(importable) 2024-01-25T19:03:40,165 creating build/lib/SigProfilerAssignment/DecompositionPlots 2024-01-25T19:03:40,165 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2024-01-25T19:03:40,166 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_CNV48.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2024-01-25T19:03:40,166 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_DBS78.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2024-01-25T19:03:40,167 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_ID83.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2024-01-25T19:03:40,168 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS1536.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2024-01-25T19:03:40,168 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS288.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2024-01-25T19:03:40,169 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS96.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2024-01-25T19:03:40,169 copying SigProfilerAssignment/DecompositionPlots/SigProfilerPlottingMatrix.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2024-01-25T19:03:40,170 creating build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2024-01-25T19:03:40,170 copying SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Accolade_fermante.png -> build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2024-01-25T19:03:40,171 copying SigProfilerAssignment/DecompositionPlots/ReferenceFiles/CREDIT.md -> build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2024-01-25T19:03:40,171 creating build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts 2024-01-25T19:03:40,172 copying SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts/Arial Bold.ttf -> build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts 2024-01-25T19:03:40,172 creating build/lib/SigProfilerAssignment/data 2024-01-25T19:03:40,173 copying SigProfilerAssignment/data/21_breast_WGS_substitutions.mat -> build/lib/SigProfilerAssignment/data 2024-01-25T19:03:40,174 copying SigProfilerAssignment/data/CNV_features.tsv -> build/lib/SigProfilerAssignment/data 2024-01-25T19:03:40,174 copying SigProfilerAssignment/data/CNV_signatures.txt -> build/lib/SigProfilerAssignment/data 2024-01-25T19:03:40,175 copying SigProfilerAssignment/data/CN_classes_dictionary.txt -> build/lib/SigProfilerAssignment/data 2024-01-25T19:03:40,175 copying SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx -> build/lib/SigProfilerAssignment/data 2024-01-25T19:03:40,176 copying SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx -> build/lib/SigProfilerAssignment/data 2024-01-25T19:03:40,176 copying SigProfilerAssignment/data/Samples.txt -> build/lib/SigProfilerAssignment/data 2024-01-25T19:03:40,177 copying SigProfilerAssignment/data/csvexample.csv -> build/lib/SigProfilerAssignment/data 2024-01-25T19:03:40,177 copying SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv -> build/lib/SigProfilerAssignment/data 2024-01-25T19:03:40,177 copying SigProfilerAssignment/data/sigProfiler_ID_signatures.csv -> build/lib/SigProfilerAssignment/data 2024-01-25T19:03:40,178 copying SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv -> build/lib/SigProfilerAssignment/data 2024-01-25T19:03:40,178 creating build/lib/SigProfilerAssignment/data/Reference_Signatures 2024-01-25T19:03:40,179 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,179 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,180 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,180 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,181 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,181 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,182 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,182 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,183 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,183 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,184 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,184 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,185 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,186 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,187 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,187 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,188 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,188 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,189 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,189 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,190 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,191 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,192 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_CN_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,193 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,194 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,194 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,195 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,196 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,196 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,197 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,197 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,199 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,199 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,200 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,201 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,201 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,202 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,203 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,204 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,204 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,205 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,205 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,206 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,206 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,207 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,207 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,213 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,215 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,218 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,224 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,230 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,233 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,236 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,242 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,247 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SV_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,249 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,252 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,255 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,259 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,264 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:40,264 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:40,268 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:40,271 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:40,274 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:40,278 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:40,280 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:40,283 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:40,288 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:40,292 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:40,295 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:40,298 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:40,303 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:40,308 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:40,311 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:40,314 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:40,319 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:40,324 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:40,327 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:40,330 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:40,335 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:40,340 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:40,343 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:40,346 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:40,350 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:40,355 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:40,356 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:40,359 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:40,363 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:40,366 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:40,370 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:40,373 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:40,375 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:40,381 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:40,386 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:40,389 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:40,392 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:40,398 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:40,404 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:40,407 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:40,410 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:40,416 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:40,421 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:40,424 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:40,427 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:40,434 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:40,440 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:40,443 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:40,446 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:40,450 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:40,454 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:40,455 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:40,459 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:40,463 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:40,466 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:40,469 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:40,472 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:40,475 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:40,480 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:40,484 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:40,487 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:40,490 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:40,496 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:40,502 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:40,505 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:40,507 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:40,513 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:40,519 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:40,523 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:40,526 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:40,532 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:40,537 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:40,540 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:40,543 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:40,547 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:40,551 creating build/lib/SigProfilerAssignment/data/tests 2024-01-25T19:03:40,552 creating build/lib/SigProfilerAssignment/data/tests/cnv_input 2024-01-25T19:03:40,553 copying SigProfilerAssignment/data/tests/cnv_input/all.breast.ascat.summary.sample.tsv -> build/lib/SigProfilerAssignment/data/tests/cnv_input 2024-01-25T19:03:40,561 creating build/lib/SigProfilerAssignment/data/tests/txt_input 2024-01-25T19:03:40,562 copying SigProfilerAssignment/data/tests/txt_input/CNV48_S3_Signatures.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2024-01-25T19:03:40,564 copying SigProfilerAssignment/data/tests/txt_input/DBS78_S3_Signatures.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2024-01-25T19:03:40,566 copying SigProfilerAssignment/data/tests/txt_input/ID83_S3_Signatures.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2024-01-25T19:03:40,569 copying SigProfilerAssignment/data/tests/txt_input/SBS96_S3_Signatures.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2024-01-25T19:03:40,571 copying SigProfilerAssignment/data/tests/txt_input/SV32_S3_Signatures.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2024-01-25T19:03:40,573 copying SigProfilerAssignment/data/tests/txt_input/sample_matrix_CNV48.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2024-01-25T19:03:40,576 copying SigProfilerAssignment/data/tests/txt_input/sample_matrix_DBS.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2024-01-25T19:03:40,578 copying SigProfilerAssignment/data/tests/txt_input/sample_matrix_ID.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2024-01-25T19:03:40,580 copying SigProfilerAssignment/data/tests/txt_input/sample_matrix_SBS.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2024-01-25T19:03:40,582 copying SigProfilerAssignment/data/tests/txt_input/sample_matrix_SV32.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2024-01-25T19:03:40,584 creating build/lib/SigProfilerAssignment/data/tests/vcf_input 2024-01-25T19:03:40,585 copying SigProfilerAssignment/data/tests/vcf_input/PD3851a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2024-01-25T19:03:40,589 copying SigProfilerAssignment/data/tests/vcf_input/PD3890a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2024-01-25T19:03:40,593 copying SigProfilerAssignment/data/tests/vcf_input/PD3904a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2024-01-25T19:03:40,598 copying SigProfilerAssignment/data/tests/vcf_input/PD3945a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2024-01-25T19:03:40,604 copying SigProfilerAssignment/data/tests/vcf_input/PD4005a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2024-01-25T19:03:40,634 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-01-25T19:03:40,635 !! 2024-01-25T19:03:40,636 ******************************************************************************** 2024-01-25T19:03:40,637 Please avoid running ``setup.py`` directly. 2024-01-25T19:03:40,638 Instead, use pypa/build, pypa/installer or other 2024-01-25T19:03:40,638 standards-based tools. 2024-01-25T19:03:40,639 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-01-25T19:03:40,640 ******************************************************************************** 2024-01-25T19:03:40,640 !! 2024-01-25T19:03:40,641 self.initialize_options() 2024-01-25T19:03:40,663 installing to build/bdist.linux-armv7l/wheel 2024-01-25T19:03:40,664 running install 2024-01-25T19:03:40,688 running install_lib 2024-01-25T19:03:40,713 creating build/bdist.linux-armv7l 2024-01-25T19:03:40,714 creating build/bdist.linux-armv7l/wheel 2024-01-25T19:03:40,716 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2024-01-25T19:03:40,718 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2024-01-25T19:03:40,720 copying build/lib/SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2024-01-25T19:03:40,724 copying build/lib/SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2024-01-25T19:03:40,726 copying build/lib/SigProfilerAssignment/data/csvexample.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2024-01-25T19:03:40,729 copying build/lib/SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2024-01-25T19:03:40,735 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests 2024-01-25T19:03:40,737 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2024-01-25T19:03:40,738 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD4005a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2024-01-25T19:03:40,743 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3945a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2024-01-25T19:03:40,750 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3890a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2024-01-25T19:03:40,755 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3904a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2024-01-25T19:03:40,759 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3851a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2024-01-25T19:03:40,762 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2024-01-25T19:03:40,763 copying build/lib/SigProfilerAssignment/data/tests/txt_input/sample_matrix_DBS.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2024-01-25T19:03:40,765 copying build/lib/SigProfilerAssignment/data/tests/txt_input/sample_matrix_CNV48.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2024-01-25T19:03:40,768 copying build/lib/SigProfilerAssignment/data/tests/txt_input/sample_matrix_SV32.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2024-01-25T19:03:40,770 copying build/lib/SigProfilerAssignment/data/tests/txt_input/ID83_S3_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2024-01-25T19:03:40,772 copying build/lib/SigProfilerAssignment/data/tests/txt_input/sample_matrix_ID.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2024-01-25T19:03:40,774 copying build/lib/SigProfilerAssignment/data/tests/txt_input/SBS96_S3_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2024-01-25T19:03:40,777 copying build/lib/SigProfilerAssignment/data/tests/txt_input/sample_matrix_SBS.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2024-01-25T19:03:40,778 copying build/lib/SigProfilerAssignment/data/tests/txt_input/DBS78_S3_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2024-01-25T19:03:40,781 copying build/lib/SigProfilerAssignment/data/tests/txt_input/CNV48_S3_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2024-01-25T19:03:40,783 copying build/lib/SigProfilerAssignment/data/tests/txt_input/SV32_S3_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2024-01-25T19:03:40,785 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/cnv_input 2024-01-25T19:03:40,786 copying build/lib/SigProfilerAssignment/data/tests/cnv_input/all.breast.ascat.summary.sample.tsv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/cnv_input 2024-01-25T19:03:40,795 copying build/lib/SigProfilerAssignment/data/CNV_signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2024-01-25T19:03:40,799 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures 2024-01-25T19:03:40,800 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,801 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,807 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,810 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SV_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,812 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,817 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,822 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,825 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,830 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,834 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,837 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,842 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,845 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,848 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,852 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,855 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,859 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,863 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,866 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,868 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,871 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,874 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,877 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,881 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,884 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,887 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-01-25T19:03:40,890 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,892 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_CN_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,894 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,897 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,900 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,903 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,906 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,911 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,916 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,918 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,921 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,925 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,928 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,930 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,936 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,942 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,944 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,950 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,953 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,957 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,960 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,963 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,966 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,969 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,975 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,977 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,980 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,983 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,986 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,990 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,992 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:40,996 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:41,000 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-01-25T19:03:41,003 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:41,004 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:41,007 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:41,009 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:41,015 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:41,018 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:41,023 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:41,029 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:41,032 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:41,034 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:41,038 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:41,041 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:41,046 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:41,050 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:41,052 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:41,055 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:41,059 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:41,064 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:41,067 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:41,072 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:41,078 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:41,081 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:41,083 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:41,089 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:41,095 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-01-25T19:03:41,098 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:41,099 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:41,101 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:41,104 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:41,110 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:41,116 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:41,119 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:41,131 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:41,137 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:41,145 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:41,151 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:41,154 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:41,160 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:41,164 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:41,167 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:41,170 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:41,173 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:41,176 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:41,183 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:41,186 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:41,189 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:41,193 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:41,196 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:41,199 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:41,205 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-01-25T19:03:41,211 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:41,212 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:41,217 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:41,223 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:41,226 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:41,230 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:41,234 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:41,236 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:41,240 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:41,243 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:41,248 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:41,251 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:41,254 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:41,256 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:41,259 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:41,263 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:41,266 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:41,268 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:41,271 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:41,274 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:41,280 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:41,286 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:41,291 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:41,294 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:41,297 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-01-25T19:03:41,302 copying build/lib/SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2024-01-25T19:03:41,313 copying build/lib/SigProfilerAssignment/data/sigProfiler_ID_signatures.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2024-01-25T19:03:41,316 copying build/lib/SigProfilerAssignment/data/21_breast_WGS_substitutions.mat -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2024-01-25T19:03:41,317 copying build/lib/SigProfilerAssignment/data/CNV_features.tsv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2024-01-25T19:03:41,319 copying build/lib/SigProfilerAssignment/data/CN_classes_dictionary.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2024-01-25T19:03:41,321 copying build/lib/SigProfilerAssignment/data/Samples.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2024-01-25T19:03:41,324 copying build/lib/SigProfilerAssignment/version.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2024-01-25T19:03:41,325 copying build/lib/SigProfilerAssignment/Analyzer.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2024-01-25T19:03:41,328 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2024-01-25T19:03:41,329 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2024-01-25T19:03:41,331 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts 2024-01-25T19:03:41,332 copying build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts/Arial Bold.ttf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts 2024-01-25T19:03:41,346 copying build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/CREDIT.md -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2024-01-25T19:03:41,348 copying build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Accolade_fermante.png -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2024-01-25T19:03:41,351 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_CNV48.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2024-01-25T19:03:41,353 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS288.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2024-01-25T19:03:41,355 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_DBS78.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2024-01-25T19:03:41,358 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2024-01-25T19:03:41,361 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS96.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2024-01-25T19:03:41,363 copying build/lib/SigProfilerAssignment/DecompositionPlots/SigProfilerPlottingMatrix.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2024-01-25T19:03:41,370 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_ID83.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2024-01-25T19:03:41,372 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS1536.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2024-01-25T19:03:41,375 copying build/lib/SigProfilerAssignment/single_sample.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2024-01-25T19:03:41,378 copying build/lib/SigProfilerAssignment/decompose_subroutines.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2024-01-25T19:03:41,381 copying build/lib/SigProfilerAssignment/decomposition.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2024-01-25T19:03:41,384 copying build/lib/SigProfilerAssignment/__init__.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2024-01-25T19:03:41,386 running install_egg_info 2024-01-25T19:03:41,416 Copying SigProfilerAssignment.egg-info to build/bdist.linux-armv7l/wheel/SigProfilerAssignment-0.1.1-py3.11.egg-info 2024-01-25T19:03:41,428 running install_scripts 2024-01-25T19:03:41,446 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment-0.1.1.dist-info/WHEEL 2024-01-25T19:03:41,449 creating '/tmp/pip-wheel-jmk_guv2/SigProfilerAssignment-0.1.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-01-25T19:03:41,451 adding 'SigProfilerAssignment/Analyzer.py' 2024-01-25T19:03:41,453 adding 'SigProfilerAssignment/__init__.py' 2024-01-25T19:03:41,459 adding 'SigProfilerAssignment/decompose_subroutines.py' 2024-01-25T19:03:41,463 adding 'SigProfilerAssignment/decomposition.py' 2024-01-25T19:03:41,467 adding 'SigProfilerAssignment/single_sample.py' 2024-01-25T19:03:41,468 adding 'SigProfilerAssignment/version.py' 2024-01-25T19:03:41,472 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition.py' 2024-01-25T19:03:41,475 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_CNV48.py' 2024-01-25T19:03:41,477 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_DBS78.py' 2024-01-25T19:03:41,479 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_ID83.py' 2024-01-25T19:03:41,481 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS1536.py' 2024-01-25T19:03:41,484 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS288.py' 2024-01-25T19:03:41,486 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS96.py' 2024-01-25T19:03:41,501 adding 'SigProfilerAssignment/DecompositionPlots/SigProfilerPlottingMatrix.py' 2024-01-25T19:03:41,506 adding 'SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Accolade_fermante.png' 2024-01-25T19:03:41,507 adding 'SigProfilerAssignment/DecompositionPlots/ReferenceFiles/CREDIT.md' 2024-01-25T19:03:41,615 adding 'SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts/Arial Bold.ttf' 2024-01-25T19:03:41,623 adding 'SigProfilerAssignment/data/21_breast_WGS_substitutions.mat' 2024-01-25T19:03:41,624 adding 'SigProfilerAssignment/data/CNV_features.tsv' 2024-01-25T19:03:41,627 adding 'SigProfilerAssignment/data/CNV_signatures.txt' 2024-01-25T19:03:41,629 adding 'SigProfilerAssignment/data/CN_classes_dictionary.txt' 2024-01-25T19:03:41,643 adding 'SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx' 2024-01-25T19:03:41,686 adding 'SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx' 2024-01-25T19:03:41,690 adding 'SigProfilerAssignment/data/Samples.txt' 2024-01-25T19:03:41,692 adding 'SigProfilerAssignment/data/csvexample.csv' 2024-01-25T19:03:41,694 adding 'SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv' 2024-01-25T19:03:41,698 adding 'SigProfilerAssignment/data/sigProfiler_ID_signatures.csv' 2024-01-25T19:03:41,711 adding 'SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv' 2024-01-25T19:03:41,717 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt' 2024-01-25T19:03:41,726 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37_exome.txt' 2024-01-25T19:03:41,734 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt' 2024-01-25T19:03:41,747 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37_exome.txt' 2024-01-25T19:03:41,750 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt' 2024-01-25T19:03:41,754 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37_exome.txt' 2024-01-25T19:03:41,759 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt' 2024-01-25T19:03:41,792 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt' 2024-01-25T19:03:41,827 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37_exome.txt' 2024-01-25T19:03:41,830 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt' 2024-01-25T19:03:41,834 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37_exome.txt' 2024-01-25T19:03:41,839 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt' 2024-01-25T19:03:41,861 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt' 2024-01-25T19:03:41,897 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt' 2024-01-25T19:03:41,935 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37_exome.txt' 2024-01-25T19:03:41,939 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt' 2024-01-25T19:03:41,943 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt' 2024-01-25T19:03:41,946 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37_exome.txt' 2024-01-25T19:03:41,952 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt' 2024-01-25T19:03:41,988 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt' 2024-01-25T19:03:42,027 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37_exome.txt' 2024-01-25T19:03:42,030 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_CN_GRCh37.txt' 2024-01-25T19:03:42,034 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_DBS_GRCh37.txt' 2024-01-25T19:03:42,040 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_DBS_GRCh37_exome.txt' 2024-01-25T19:03:42,045 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_ID_GRCh37.txt' 2024-01-25T19:03:42,065 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_SBS_GRCh37.txt' 2024-01-25T19:03:42,106 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_SBS_GRCh37_exome.txt' 2024-01-25T19:03:42,111 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt' 2024-01-25T19:03:42,114 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37_exome.txt' 2024-01-25T19:03:42,120 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt' 2024-01-25T19:03:42,151 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt' 2024-01-25T19:03:42,183 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37_exome.txt' 2024-01-25T19:03:42,194 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt' 2024-01-25T19:03:42,202 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38_exome.txt' 2024-01-25T19:03:42,215 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt' 2024-01-25T19:03:42,227 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38_exome.txt' 2024-01-25T19:03:42,231 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt' 2024-01-25T19:03:42,234 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38_exome.txt' 2024-01-25T19:03:42,268 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt' 2024-01-25T19:03:42,302 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38_exome.txt' 2024-01-25T19:03:42,306 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt' 2024-01-25T19:03:42,310 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38_exome.txt' 2024-01-25T19:03:42,346 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt' 2024-01-25T19:03:42,384 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38_exome.txt' 2024-01-25T19:03:42,388 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt' 2024-01-25T19:03:42,391 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38_exome.txt' 2024-01-25T19:03:42,428 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt' 2024-01-25T19:03:42,466 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38_exome.txt' 2024-01-25T19:03:42,474 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_DBS_GRCh38.txt' 2024-01-25T19:03:42,481 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_DBS_GRCh38_exome.txt' 2024-01-25T19:03:42,525 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SBS_GRCh38.txt' 2024-01-25T19:03:42,567 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SBS_GRCh38_exome.txt' 2024-01-25T19:03:42,569 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SV_GRCh38.txt' 2024-01-25T19:03:42,572 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt' 2024-01-25T19:03:42,575 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38_exome.txt' 2024-01-25T19:03:42,606 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt' 2024-01-25T19:03:42,638 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38_exome.txt' 2024-01-25T19:03:42,648 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt' 2024-01-25T19:03:42,659 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10_exome.txt' 2024-01-25T19:03:42,671 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt' 2024-01-25T19:03:42,683 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10_exome.txt' 2024-01-25T19:03:42,686 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt' 2024-01-25T19:03:42,690 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10_exome.txt' 2024-01-25T19:03:42,723 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt' 2024-01-25T19:03:42,758 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10_exome.txt' 2024-01-25T19:03:42,762 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt' 2024-01-25T19:03:42,765 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10_exome.txt' 2024-01-25T19:03:42,802 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt' 2024-01-25T19:03:42,839 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10_exome.txt' 2024-01-25T19:03:42,843 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt' 2024-01-25T19:03:42,847 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10_exome.txt' 2024-01-25T19:03:42,884 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt' 2024-01-25T19:03:42,923 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10_exome.txt' 2024-01-25T19:03:42,931 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_DBS_mm10.txt' 2024-01-25T19:03:42,937 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_DBS_mm10_exome.txt' 2024-01-25T19:03:42,982 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_SBS_mm10.txt' 2024-01-25T19:03:43,024 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_SBS_mm10_exome.txt' 2024-01-25T19:03:43,028 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt' 2024-01-25T19:03:43,031 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10_exome.txt' 2024-01-25T19:03:43,062 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt' 2024-01-25T19:03:43,094 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10_exome.txt' 2024-01-25T19:03:43,104 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt' 2024-01-25T19:03:43,113 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9_exome.txt' 2024-01-25T19:03:43,125 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt' 2024-01-25T19:03:43,137 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9_exome.txt' 2024-01-25T19:03:43,141 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt' 2024-01-25T19:03:43,144 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9_exome.txt' 2024-01-25T19:03:43,178 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt' 2024-01-25T19:03:43,212 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9_exome.txt' 2024-01-25T19:03:43,216 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt' 2024-01-25T19:03:43,219 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9_exome.txt' 2024-01-25T19:03:43,256 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9.txt' 2024-01-25T19:03:43,293 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9_exome.txt' 2024-01-25T19:03:43,297 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9.txt' 2024-01-25T19:03:43,300 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9_exome.txt' 2024-01-25T19:03:43,338 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9.txt' 2024-01-25T19:03:43,376 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9_exome.txt' 2024-01-25T19:03:43,384 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_DBS_mm9.txt' 2024-01-25T19:03:43,391 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_DBS_mm9_exome.txt' 2024-01-25T19:03:43,435 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_SBS_mm9.txt' 2024-01-25T19:03:43,477 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_SBS_mm9_exome.txt' 2024-01-25T19:03:43,481 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9.txt' 2024-01-25T19:03:43,485 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9_exome.txt' 2024-01-25T19:03:43,516 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9.txt' 2024-01-25T19:03:43,547 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9_exome.txt' 2024-01-25T19:03:43,558 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6.txt' 2024-01-25T19:03:43,566 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6_exome.txt' 2024-01-25T19:03:43,579 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6.txt' 2024-01-25T19:03:43,591 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6_exome.txt' 2024-01-25T19:03:43,594 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6.txt' 2024-01-25T19:03:43,598 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6_exome.txt' 2024-01-25T19:03:43,631 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6.txt' 2024-01-25T19:03:43,666 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6_exome.txt' 2024-01-25T19:03:43,670 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6.txt' 2024-01-25T19:03:43,673 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6_exome.txt' 2024-01-25T19:03:43,710 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6.txt' 2024-01-25T19:03:43,747 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6_exome.txt' 2024-01-25T19:03:43,752 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6.txt' 2024-01-25T19:03:43,755 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6_exome.txt' 2024-01-25T19:03:43,793 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6.txt' 2024-01-25T19:03:43,831 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6_exome.txt' 2024-01-25T19:03:43,839 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_DBS_rn6.txt' 2024-01-25T19:03:43,846 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_DBS_rn6_exome.txt' 2024-01-25T19:03:43,890 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_SBS_rn6.txt' 2024-01-25T19:03:43,932 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_SBS_rn6_exome.txt' 2024-01-25T19:03:43,936 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6.txt' 2024-01-25T19:03:43,940 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6_exome.txt' 2024-01-25T19:03:43,971 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6.txt' 2024-01-25T19:03:44,003 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6_exome.txt' 2024-01-25T19:03:44,069 adding 'SigProfilerAssignment/data/tests/cnv_input/all.breast.ascat.summary.sample.tsv' 2024-01-25T19:03:44,074 adding 'SigProfilerAssignment/data/tests/txt_input/CNV48_S3_Signatures.txt' 2024-01-25T19:03:44,075 adding 'SigProfilerAssignment/data/tests/txt_input/DBS78_S3_Signatures.txt' 2024-01-25T19:03:44,077 adding 'SigProfilerAssignment/data/tests/txt_input/ID83_S3_Signatures.txt' 2024-01-25T19:03:44,079 adding 'SigProfilerAssignment/data/tests/txt_input/SBS96_S3_Signatures.txt' 2024-01-25T19:03:44,081 adding 'SigProfilerAssignment/data/tests/txt_input/SV32_S3_Signatures.txt' 2024-01-25T19:03:44,083 adding 'SigProfilerAssignment/data/tests/txt_input/sample_matrix_CNV48.txt' 2024-01-25T19:03:44,085 adding 'SigProfilerAssignment/data/tests/txt_input/sample_matrix_DBS.txt' 2024-01-25T19:03:44,086 adding 'SigProfilerAssignment/data/tests/txt_input/sample_matrix_ID.txt' 2024-01-25T19:03:44,088 adding 'SigProfilerAssignment/data/tests/txt_input/sample_matrix_SBS.txt' 2024-01-25T19:03:44,089 adding 'SigProfilerAssignment/data/tests/txt_input/sample_matrix_SV32.txt' 2024-01-25T19:03:44,096 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3851a.vcf' 2024-01-25T19:03:44,116 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3890a.vcf' 2024-01-25T19:03:44,135 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3904a.vcf' 2024-01-25T19:03:44,168 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3945a.vcf' 2024-01-25T19:03:44,190 adding 'SigProfilerAssignment/data/tests/vcf_input/PD4005a.vcf' 2024-01-25T19:03:44,193 adding 'SigProfilerAssignment-0.1.1.dist-info/LICENSE.txt' 2024-01-25T19:03:44,194 adding 'SigProfilerAssignment-0.1.1.dist-info/METADATA' 2024-01-25T19:03:44,196 adding 'SigProfilerAssignment-0.1.1.dist-info/WHEEL' 2024-01-25T19:03:44,196 adding 'SigProfilerAssignment-0.1.1.dist-info/top_level.txt' 2024-01-25T19:03:44,200 adding 'SigProfilerAssignment-0.1.1.dist-info/RECORD' 2024-01-25T19:03:44,271 removing build/bdist.linux-armv7l/wheel 2024-01-25T19:03:44,429 Building wheel for sigprofilerassignment (setup.py): finished with status 'done' 2024-01-25T19:03:44,489 Created wheel for sigprofilerassignment: filename=SigProfilerAssignment-0.1.1-py3-none-any.whl size=5572398 sha256=02933ab9110f57a87632d83b266fd241aebd313479ce491feb162bb48d0a48d4 2024-01-25T19:03:44,490 Stored in directory: /tmp/pip-ephem-wheel-cache-4mrj70f8/wheels/93/29/41/c529a09ad29c3ad79003a51ec40fb28c2df41b931da7ffb9a0 2024-01-25T19:03:44,510 Successfully built sigprofilerassignment 2024-01-25T19:03:44,647 Removed build tracker: '/tmp/pip-build-tracker-ot4in0v7'