2024-01-28T12:02:25,456 Created temporary directory: /tmp/pip-build-tracker-6fldnoo6 2024-01-28T12:02:25,458 Initialized build tracking at /tmp/pip-build-tracker-6fldnoo6 2024-01-28T12:02:25,458 Created build tracker: /tmp/pip-build-tracker-6fldnoo6 2024-01-28T12:02:25,458 Entered build tracker: /tmp/pip-build-tracker-6fldnoo6 2024-01-28T12:02:25,459 Created temporary directory: /tmp/pip-wheel-a8wz9qst 2024-01-28T12:02:25,463 Created temporary directory: /tmp/pip-ephem-wheel-cache-8sca2pn1 2024-01-28T12:02:25,490 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-28T12:02:25,493 2 location(s) to search for versions of nngt: 2024-01-28T12:02:25,493 * https://pypi.org/simple/nngt/ 2024-01-28T12:02:25,493 * https://www.piwheels.org/simple/nngt/ 2024-01-28T12:02:25,494 Fetching project page and analyzing links: https://pypi.org/simple/nngt/ 2024-01-28T12:02:25,494 Getting page https://pypi.org/simple/nngt/ 2024-01-28T12:02:25,496 Found index url https://pypi.org/simple/ 2024-01-28T12:02:25,549 Fetched page https://pypi.org/simple/nngt/ as application/vnd.pypi.simple.v1+json 2024-01-28T12:02:25,578 Found link https://files.pythonhosted.org/packages/d4/c5/b906ebd42bcd83fd06aa93bee7d0ca74e68e924a64d55f0a8065080a06b6/nngt-0.9.dev1.tar.gz (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4), version: 0.9.dev1 2024-01-28T12:02:25,579 Found link https://files.pythonhosted.org/packages/3e/eb/cbaac25c605476b563f71885c04d6c62be1164c947d00436d92c566cefc9/nngt-0.9.dev2.tar.gz (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4), version: 0.9.dev2 2024-01-28T12:02:25,579 Found link https://files.pythonhosted.org/packages/0b/6b/811cdf28df1390d60d04693d58505fe6cf7a0167968bb0be799735ab2ed0/nngt-0.9.dev3.tar.gz (from https://pypi.org/simple/nngt/), version: 0.9.dev3 2024-01-28T12:02:25,580 Found link https://files.pythonhosted.org/packages/29/43/dcf9b9c68ba056ebaf2a8c5f5aac61251e6d426874bb80baa5fc4f170c97/nngt-1.0.0a1.tar.gz (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4), version: 1.0.0a1 2024-01-28T12:02:25,581 Found link https://files.pythonhosted.org/packages/c9/7d/e052c3a5265e2a9670e8fa8a872e00aa0d40860994be50526bee34d73524/nngt-1.0.0a2.tar.gz (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4), version: 1.0.0a2 2024-01-28T12:02:25,581 Found link https://files.pythonhosted.org/packages/68/10/5b61ebf9140f33935ee2ec0044c54bac1e7b541f0e8a503afb3749a44d3d/nngt-1.0.1.tar.gz (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4), version: 1.0.1 2024-01-28T12:02:25,582 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/5b/33/c0d1d7516f9ec978a63942331d56c206d8526e2f9ccdffba0935847d63e1/nngt-1.0.2-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-01-28T12:02:25,582 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/ea/22/38fa33baea04550e08f53dfb402bcfda2236ab44a7314640a5a101233b18/nngt-1.0.2-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-01-28T12:02:25,582 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/a1/1e/4bbca4cbbe313504133080382b0be7b7e0a989d4097e9cc6b548fe01fbf8/nngt-1.1.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-01-28T12:02:25,582 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/b2/78/d35beaaaa3d2fc091a0ab596f766153ed8c4dfed73ac8374fd33a3d9213f/nngt-1.1.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-01-28T12:02:25,582 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/f2/17/bb2c448f30a99b8a87a039a4299c9358013f8324955a9f0c259e2fd02a7b/nngt-1.1.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-01-28T12:02:25,583 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/15/3e/2d59287009fa1b7ad9ba8aceebc7ed6f64877e8af50fa30eec73f63b8d91/nngt-1.1.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-01-28T12:02:25,583 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/d7/cc/65f356f5997051ad1448f339e77c6f1fda5527a5506147414774ab7fff26/nngt-1.1.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-01-28T12:02:25,584 Found link https://files.pythonhosted.org/packages/dd/57/c080b633f928e59009df278f86a5deb857ec855ced0e92bf5a66e6622587/nngt-1.1.0.tar.gz (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4), version: 1.1.0 2024-01-28T12:02:25,584 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/e3/e6/fc145bf6967aebd5d58431d0bd45681dc4c686cd3b401adca59e2a1c34bc/nngt-1.1.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-01-28T12:02:25,584 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/24/15/ee7a6d70087cd846165dc3839ffd0260dda96402b9fc73156caef56d6029/nngt-1.1.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-01-28T12:02:25,584 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/86/1e/4874d92118ab96083ceb646ab9b30a45bde02c8e6b3d769d3b93141a4dc8/nngt-1.1.1-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-01-28T12:02:25,584 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/c7/36/ce4ab69869e68453358afddc06324659a9e466ea169c1dc95860057aac09/nngt-1.1.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-01-28T12:02:25,585 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/8a/9e/5a72e54751c8bfa4948b29600b1f87de74783192579d4982b4e586b982d3/nngt-1.1.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-01-28T12:02:25,585 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/29/93/73ee8314cd35a11a2436365c25b0e0c374e2f20e173e0d0e031932eee984/nngt-1.1.1-py2.py3-none-any.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-01-28T12:02:25,585 Found link https://files.pythonhosted.org/packages/ac/aa/b4ab15d3b63545f5dbfa9e6227f539d92945a6f7eff265439b52b13f6ffd/nngt-1.1.1.tar.gz (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, 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https://files.pythonhosted.org/packages/36/9a/16076817d9d648a6e31e692e1918c3db7d0a49070677761e850802f41d71/nngt-1.2.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-01-28T12:02:25,587 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/35/2d/a30bd5c371864d925fb186e15a976db1372f76a3c9c4da6aa7be280ac57f/nngt-1.2.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-01-28T12:02:25,587 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/f9/d3/52b491207f8f67736bb9cffd5c5b8922b9250724dced3807aaeed3a5904f/nngt-1.2.0-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-01-28T12:02:25,587 Found link https://files.pythonhosted.org/packages/4e/9e/ef294c748a3533c056cf01400babef12331739103b0ca6651fac41256a15/nngt-1.2.0.tar.gz (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4), version: 1.2.0 2024-01-28T12:02:25,588 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/57/5c/b1dcf3f243ae56d646f3bbf467279f8f45784815448c2e1662f1d67dac10/nngt-1.2.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-01-28T12:02:25,588 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/15/e7/6eeb8d6f281cbd4bd85c596cb265096f0bab09eb691641f2adb7dfaaf080/nngt-1.2.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-01-28T12:02:25,588 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/b7/51/95a49f4cb97067007fa4a40bb0d87200b9985171e09687baca2eaa102165/nngt-1.2.1-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-01-28T12:02:25,588 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/ce/dc/242e1d443f873e6d2a662bf0940ab08bf94311c314db6bd4de4dd4e8ceb0/nngt-1.2.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-01-28T12:02:25,588 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/1b/d9/8cc9c572e0b95b6ca7664729efd07e6e22b87a1b2c13773ccc0c2aef2697/nngt-1.2.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-01-28T12:02:25,589 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/f2/13/b7edb43c0031ea713f01e955d5985b8ff5dc72d4dd76e848ac3455f1604f/nngt-1.2.1-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-01-28T12:02:25,589 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/50/4b/fb9f77c77cf52605c95cf0241e994901171085ebfcd488168db7b9ef3804/nngt-1.2.1-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-01-28T12:02:25,589 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/f2/0e/7a9fad8bf9c9ba34369702f6331cebabe94df89cb778fd73ee3b4987a4e6/nngt-1.2.1-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-01-28T12:02:25,590 Found link https://files.pythonhosted.org/packages/f4/b0/36ffbf5d499dca0f7a27bede696f864054c63d42dbb100b012375c220064/nngt-1.2.1.tar.gz (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4), version: 1.2.1 2024-01-28T12:02:25,590 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/f8/4d/4056306e7110fa9a27536aefbe2ce9075591c715ea4a80ba6e13336f79dc/nngt-1.3.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-01-28T12:02:25,590 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/75/0d/d3187d5a98d2af7c076ba2ef8d3962af1118390d69a9541b58bb2fa7a0d1/nngt-1.3.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-01-28T12:02:25,590 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/f5/4a/336052f8c881c892297ee49f2dc71cba8cf64450c19007729aa0f79fc085/nngt-1.3.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-01-28T12:02:25,591 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/d5/be/bd33a63f3d5065275dd65db6796bde95480df792e726ed99430f29ec7b6e/nngt-1.3.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-01-28T12:02:25,591 Skipping link: No binaries permitted for nngt: 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(from https://www.piwheels.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-01-28T12:02:25,699 Skipping link: not a file: https://www.piwheels.org/simple/nngt/ 2024-01-28T12:02:25,699 Skipping link: not a file: https://pypi.org/simple/nngt/ 2024-01-28T12:02:25,720 Given no hashes to check 1 links for project 'nngt': discarding no candidates 2024-01-28T12:02:25,737 Collecting nngt==2.7.1 2024-01-28T12:02:25,740 Created temporary directory: /tmp/pip-unpack-fuz08tz0 2024-01-28T12:02:25,784 Downloading NNGT-2.7.1.tar.gz (339 kB) 2024-01-28T12:02:26,125 Added nngt==2.7.1 from https://files.pythonhosted.org/packages/27/50/2a1caa1c6a04b401fa490586a7488aaaecf28b3f2d69d45bde83111ade3f/NNGT-2.7.1.tar.gz to build tracker '/tmp/pip-build-tracker-6fldnoo6' 2024-01-28T12:02:26,134 Created temporary directory: /tmp/pip-build-env-z5zg2jmt 2024-01-28T12:02:26,144 Installing build dependencies: started 2024-01-28T12:02:26,145 Running command pip subprocess to install build dependencies 2024-01-28T12:02:27,318 Using pip 23.3.1 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9) 2024-01-28T12:02:27,857 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-28T12:02:29,246 Collecting setuptools>=61.0 2024-01-28T12:02:29,262 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.0.3-py3-none-any.whl (819 kB) 2024-01-28T12:02:30,263 Collecting numpy>=1.17 2024-01-28T12:02:30,286 Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.3-cp39-cp39-linux_armv7l.whl (19.4 MB) 2024-01-28T12:02:32,126 Collecting cython>=0.18 2024-01-28T12:02:32,127 Obtaining dependency information for cython>=0.18 from https://files.pythonhosted.org/packages/e3/7f/f584f5d15323feb897d42ef0e9d910649e2150d7a30cf7e7a8cc1d236e6f/Cython-3.0.8-py2.py3-none-any.whl.metadata 2024-01-28T12:02:32,146 Using cached Cython-3.0.8-py2.py3-none-any.whl.metadata (3.2 kB) 2024-01-28T12:02:32,401 Using cached Cython-3.0.8-py2.py3-none-any.whl (1.2 MB) 2024-01-28T12:02:33,980 Installing collected packages: setuptools, numpy, cython 2024-01-28T12:02:43,733 Creating /tmp/pip-build-env-z5zg2jmt/overlay/bin 2024-01-28T12:02:43,735 changing mode of /tmp/pip-build-env-z5zg2jmt/overlay/bin/f2py to 755 2024-01-28T12:02:46,402 changing mode of /tmp/pip-build-env-z5zg2jmt/overlay/bin/cygdb to 755 2024-01-28T12:02:46,404 changing mode of /tmp/pip-build-env-z5zg2jmt/overlay/bin/cython to 755 2024-01-28T12:02:46,407 changing mode of /tmp/pip-build-env-z5zg2jmt/overlay/bin/cythonize to 755 2024-01-28T12:02:46,430 ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. 2024-01-28T12:02:46,430 scipy 1.8.1 requires numpy<1.25.0,>=1.17.3, but you have numpy 1.26.3 which is incompatible. 2024-01-28T12:02:46,431 Successfully installed cython-3.0.8 numpy-1.26.3 setuptools-69.0.3 2024-01-28T12:02:46,620 [notice] A new release of pip is available: 23.3.1 -> 23.3.2 2024-01-28T12:02:46,620 [notice] To update, run: python3 -m pip install --upgrade pip 2024-01-28T12:02:47,040 Installing build dependencies: finished with status 'done' 2024-01-28T12:02:47,045 Getting requirements to build wheel: started 2024-01-28T12:02:47,046 Running command Getting requirements to build wheel 2024-01-28T12:02:58,254 Compiling ./nngt/generation/cconnect.pyx because it changed. 2024-01-28T12:02:58,255 [1/1] Cythonizing ./nngt/generation/cconnect.pyx 2024-01-28T12:02:58,536 running egg_info 2024-01-28T12:02:58,541 writing NNGT.egg-info/PKG-INFO 2024-01-28T12:02:58,544 /tmp/pip-build-env-z5zg2jmt/overlay/lib/python3.9/site-packages/setuptools/_core_metadata.py:157: SetuptoolsDeprecationWarning: Invalid config. 2024-01-28T12:02:58,544 !! 2024-01-28T12:02:58,544 ******************************************************************************** 2024-01-28T12:02:58,544 newlines are not allowed in `summary` and will break in the future 2024-01-28T12:02:58,544 ******************************************************************************** 2024-01-28T12:02:58,545 !! 2024-01-28T12:02:58,545 write_field('Summary', single_line(summary)) 2024-01-28T12:02:58,558 writing dependency_links to NNGT.egg-info/dependency_links.txt 2024-01-28T12:02:58,565 writing requirements to NNGT.egg-info/requires.txt 2024-01-28T12:02:58,567 writing top-level names to NNGT.egg-info/top_level.txt 2024-01-28T12:02:58,607 dependency /tmp/pip-build-env-z5zg2jmt/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-28T12:02:58,608 dependency /tmp/pip-build-env-z5zg2jmt/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-01-28T12:02:58,608 dependency /tmp/pip-build-env-z5zg2jmt/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-28T12:02:58,608 dependency /tmp/pip-build-env-z5zg2jmt/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-01-28T12:02:58,609 dependency /tmp/pip-build-env-z5zg2jmt/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-01-28T12:02:58,614 reading manifest file 'NNGT.egg-info/SOURCES.txt' 2024-01-28T12:02:58,618 reading manifest template 'MANIFEST.in' 2024-01-28T12:02:58,724 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2024-01-28T12:02:58,727 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2024-01-28T12:02:58,727 adding license file 'LICENSES/BSD-2-Clause.txt' 2024-01-28T12:02:58,728 adding license file 'LICENSES/CC-BY-SA-4.0.txt' 2024-01-28T12:02:58,728 adding license file 'LICENSES/CC0-1.0.txt' 2024-01-28T12:02:58,728 adding license file 'LICENSES/GPL-3.0-or-later.txt' 2024-01-28T12:02:58,729 adding license file 'LICENSES/Python-2.0.txt' 2024-01-28T12:02:58,736 writing manifest file 'NNGT.egg-info/SOURCES.txt' 2024-01-28T12:02:59,381 Getting requirements to build wheel: finished with status 'done' 2024-01-28T12:02:59,393 Installing backend dependencies: started 2024-01-28T12:02:59,397 Running command pip subprocess to install backend dependencies 2024-01-28T12:03:00,556 Using pip 23.3.1 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9) 2024-01-28T12:03:01,089 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-28T12:03:01,439 Collecting wheel 2024-01-28T12:03:01,456 Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB) 2024-01-28T12:03:02,837 Installing collected packages: wheel 2024-01-28T12:03:03,057 Creating /tmp/pip-build-env-z5zg2jmt/normal/bin 2024-01-28T12:03:03,060 changing mode of /tmp/pip-build-env-z5zg2jmt/normal/bin/wheel to 755 2024-01-28T12:03:03,072 Successfully installed wheel-0.42.0 2024-01-28T12:03:03,257 [notice] A new release of pip is available: 23.3.1 -> 23.3.2 2024-01-28T12:03:03,257 [notice] To update, run: python3 -m pip install --upgrade pip 2024-01-28T12:03:03,475 Installing backend dependencies: finished with status 'done' 2024-01-28T12:03:03,478 Created temporary directory: /tmp/pip-modern-metadata-q7_ny7my 2024-01-28T12:03:03,480 Preparing metadata (pyproject.toml): started 2024-01-28T12:03:03,481 Running command Preparing metadata (pyproject.toml) 2024-01-28T12:03:05,453 running dist_info 2024-01-28T12:03:05,460 creating /tmp/pip-modern-metadata-q7_ny7my/NNGT.egg-info 2024-01-28T12:03:05,465 writing /tmp/pip-modern-metadata-q7_ny7my/NNGT.egg-info/PKG-INFO 2024-01-28T12:03:05,467 /tmp/pip-build-env-z5zg2jmt/overlay/lib/python3.9/site-packages/setuptools/_core_metadata.py:157: SetuptoolsDeprecationWarning: Invalid config. 2024-01-28T12:03:05,467 !! 2024-01-28T12:03:05,467 ******************************************************************************** 2024-01-28T12:03:05,468 newlines are not allowed in `summary` and will break in the future 2024-01-28T12:03:05,468 ******************************************************************************** 2024-01-28T12:03:05,468 !! 2024-01-28T12:03:05,468 write_field('Summary', single_line(summary)) 2024-01-28T12:03:05,479 writing dependency_links to /tmp/pip-modern-metadata-q7_ny7my/NNGT.egg-info/dependency_links.txt 2024-01-28T12:03:05,486 writing requirements to /tmp/pip-modern-metadata-q7_ny7my/NNGT.egg-info/requires.txt 2024-01-28T12:03:05,487 writing top-level names to /tmp/pip-modern-metadata-q7_ny7my/NNGT.egg-info/top_level.txt 2024-01-28T12:03:05,489 writing manifest file '/tmp/pip-modern-metadata-q7_ny7my/NNGT.egg-info/SOURCES.txt' 2024-01-28T12:03:05,532 dependency /tmp/pip-build-env-z5zg2jmt/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-28T12:03:05,532 dependency /tmp/pip-build-env-z5zg2jmt/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-01-28T12:03:05,532 dependency /tmp/pip-build-env-z5zg2jmt/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-28T12:03:05,532 dependency /tmp/pip-build-env-z5zg2jmt/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-01-28T12:03:05,533 dependency /tmp/pip-build-env-z5zg2jmt/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-01-28T12:03:05,537 reading manifest file '/tmp/pip-modern-metadata-q7_ny7my/NNGT.egg-info/SOURCES.txt' 2024-01-28T12:03:05,540 reading manifest template 'MANIFEST.in' 2024-01-28T12:03:05,647 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2024-01-28T12:03:05,648 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2024-01-28T12:03:05,649 adding license file 'LICENSES/BSD-2-Clause.txt' 2024-01-28T12:03:05,649 adding license file 'LICENSES/CC-BY-SA-4.0.txt' 2024-01-28T12:03:05,649 adding license file 'LICENSES/CC0-1.0.txt' 2024-01-28T12:03:05,649 adding license file 'LICENSES/GPL-3.0-or-later.txt' 2024-01-28T12:03:05,649 adding license file 'LICENSES/Python-2.0.txt' 2024-01-28T12:03:05,655 writing manifest file '/tmp/pip-modern-metadata-q7_ny7my/NNGT.egg-info/SOURCES.txt' 2024-01-28T12:03:05,656 creating '/tmp/pip-modern-metadata-q7_ny7my/NNGT-2.7.1.dist-info' 2024-01-28T12:03:05,881 Preparing metadata (pyproject.toml): finished with status 'done' 2024-01-28T12:03:05,889 Source in /tmp/pip-wheel-a8wz9qst/nngt_c79a725193704baf927b18126a487727 has version 2.7.1, which satisfies requirement nngt==2.7.1 from https://files.pythonhosted.org/packages/27/50/2a1caa1c6a04b401fa490586a7488aaaecf28b3f2d69d45bde83111ade3f/NNGT-2.7.1.tar.gz 2024-01-28T12:03:05,891 Removed nngt==2.7.1 from https://files.pythonhosted.org/packages/27/50/2a1caa1c6a04b401fa490586a7488aaaecf28b3f2d69d45bde83111ade3f/NNGT-2.7.1.tar.gz from build tracker '/tmp/pip-build-tracker-6fldnoo6' 2024-01-28T12:03:05,900 Created temporary directory: /tmp/pip-unpack-ip4znhfd 2024-01-28T12:03:05,901 Created temporary directory: /tmp/pip-unpack-ovjuks_w 2024-01-28T12:03:05,971 Building wheels for collected packages: nngt 2024-01-28T12:03:05,976 Created temporary directory: /tmp/pip-wheel-d9qorvoi 2024-01-28T12:03:05,976 Destination directory: /tmp/pip-wheel-d9qorvoi 2024-01-28T12:03:05,978 Building wheel for nngt (pyproject.toml): started 2024-01-28T12:03:05,979 Running command Building wheel for nngt (pyproject.toml) 2024-01-28T12:03:07,810 running bdist_wheel 2024-01-28T12:03:07,831 running build 2024-01-28T12:03:07,831 running build_py 2024-01-28T12:03:07,837 creating build 2024-01-28T12:03:07,838 creating build/lib.linux-armv7l-cpython-39 2024-01-28T12:03:07,839 creating build/lib.linux-armv7l-cpython-39/nngt 2024-01-28T12:03:07,840 copying ./nngt/__init__.py -> build/lib.linux-armv7l-cpython-39/nngt 2024-01-28T12:03:07,843 creating build/lib.linux-armv7l-cpython-39/nngt/core 2024-01-28T12:03:07,843 copying ./nngt/core/spatial_graph.py -> build/lib.linux-armv7l-cpython-39/nngt/core 2024-01-28T12:03:07,845 copying ./nngt/core/gt_graph.py -> build/lib.linux-armv7l-cpython-39/nngt/core 2024-01-28T12:03:07,848 copying ./nngt/core/nx_graph.py -> build/lib.linux-armv7l-cpython-39/nngt/core 2024-01-28T12:03:07,850 copying ./nngt/core/group_structure.py -> build/lib.linux-armv7l-cpython-39/nngt/core 2024-01-28T12:03:07,853 copying ./nngt/core/graph_interface.py -> build/lib.linux-armv7l-cpython-39/nngt/core 2024-01-28T12:03:07,855 copying ./nngt/core/__init__.py -> build/lib.linux-armv7l-cpython-39/nngt/core 2024-01-28T12:03:07,856 copying ./nngt/core/connections.py -> build/lib.linux-armv7l-cpython-39/nngt/core 2024-01-28T12:03:07,858 copying ./nngt/core/neural_pop_group.py -> build/lib.linux-armv7l-cpython-39/nngt/core 2024-01-28T12:03:07,861 copying ./nngt/core/graph.py -> build/lib.linux-armv7l-cpython-39/nngt/core 2024-01-28T12:03:07,865 copying ./nngt/core/nngt_graph.py -> build/lib.linux-armv7l-cpython-39/nngt/core 2024-01-28T12:03:07,868 copying ./nngt/core/ig_graph.py -> build/lib.linux-armv7l-cpython-39/nngt/core 2024-01-28T12:03:07,871 copying ./nngt/core/networks.py -> build/lib.linux-armv7l-cpython-39/nngt/core 2024-01-28T12:03:07,874 creating build/lib.linux-armv7l-cpython-39/nngt/plot 2024-01-28T12:03:07,875 copying ./nngt/plot/hive_helpers.py -> build/lib.linux-armv7l-cpython-39/nngt/plot 2024-01-28T12:03:07,877 copying ./nngt/plot/plt_networks.py -> build/lib.linux-armv7l-cpython-39/nngt/plot 2024-01-28T12:03:07,882 copying ./nngt/plot/animations.py -> build/lib.linux-armv7l-cpython-39/nngt/plot 2024-01-28T12:03:07,885 copying ./nngt/plot/__init__.py -> build/lib.linux-armv7l-cpython-39/nngt/plot 2024-01-28T12:03:07,886 copying ./nngt/plot/custom_plt.py -> build/lib.linux-armv7l-cpython-39/nngt/plot 2024-01-28T12:03:07,889 copying ./nngt/plot/plt_properties.py -> build/lib.linux-armv7l-cpython-39/nngt/plot 2024-01-28T12:03:07,892 creating build/lib.linux-armv7l-cpython-39/nngt/simulation 2024-01-28T12:03:07,893 copying ./nngt/simulation/nest_plot.py -> build/lib.linux-armv7l-cpython-39/nngt/simulation 2024-01-28T12:03:07,896 copying ./nngt/simulation/__init__.py -> build/lib.linux-armv7l-cpython-39/nngt/simulation 2024-01-28T12:03:07,898 copying ./nngt/simulation/nest_graph.py -> build/lib.linux-armv7l-cpython-39/nngt/simulation 2024-01-28T12:03:07,901 copying ./nngt/simulation/nest_activity.py -> build/lib.linux-armv7l-cpython-39/nngt/simulation 2024-01-28T12:03:07,903 copying ./nngt/simulation/nest_utils.py -> build/lib.linux-armv7l-cpython-39/nngt/simulation 2024-01-28T12:03:07,907 creating build/lib.linux-armv7l-cpython-39/nngt/geometry 2024-01-28T12:03:07,907 copying ./nngt/geometry/dxftools.py -> build/lib.linux-armv7l-cpython-39/nngt/geometry 2024-01-28T12:03:07,909 copying ./nngt/geometry/units.py -> build/lib.linux-armv7l-cpython-39/nngt/geometry 2024-01-28T12:03:07,911 copying ./nngt/geometry/shape_io.py -> build/lib.linux-armv7l-cpython-39/nngt/geometry 2024-01-28T12:03:07,913 copying ./nngt/geometry/tools.py -> build/lib.linux-armv7l-cpython-39/nngt/geometry 2024-01-28T12:03:07,915 copying ./nngt/geometry/__init__.py -> build/lib.linux-armv7l-cpython-39/nngt/geometry 2024-01-28T12:03:07,917 copying ./nngt/geometry/plot.py -> build/lib.linux-armv7l-cpython-39/nngt/geometry 2024-01-28T12:03:07,919 copying ./nngt/geometry/pync_log.py -> build/lib.linux-armv7l-cpython-39/nngt/geometry 2024-01-28T12:03:07,921 copying ./nngt/geometry/geom_utils.py -> build/lib.linux-armv7l-cpython-39/nngt/geometry 2024-01-28T12:03:07,923 copying ./nngt/geometry/svgtools.py -> build/lib.linux-armv7l-cpython-39/nngt/geometry 2024-01-28T12:03:07,925 copying ./nngt/geometry/backup_shape.py -> build/lib.linux-armv7l-cpython-39/nngt/geometry 2024-01-28T12:03:07,927 copying ./nngt/geometry/triangulate.py -> build/lib.linux-armv7l-cpython-39/nngt/geometry 2024-01-28T12:03:07,929 copying ./nngt/geometry/shape.py -> build/lib.linux-armv7l-cpython-39/nngt/geometry 2024-01-28T12:03:07,933 creating build/lib.linux-armv7l-cpython-39/nngt/geospatial 2024-01-28T12:03:07,934 copying ./nngt/geospatial/__init__.py -> build/lib.linux-armv7l-cpython-39/nngt/geospatial 2024-01-28T12:03:07,936 copying ./nngt/geospatial/plot.py -> build/lib.linux-armv7l-cpython-39/nngt/geospatial 2024-01-28T12:03:07,937 copying ./nngt/geospatial/countries.py -> build/lib.linux-armv7l-cpython-39/nngt/geospatial 2024-01-28T12:03:07,941 creating build/lib.linux-armv7l-cpython-39/nngt/lib 2024-01-28T12:03:07,942 copying ./nngt/lib/db_tools.py -> build/lib.linux-armv7l-cpython-39/nngt/lib 2024-01-28T12:03:07,943 copying ./nngt/lib/logger.py -> build/lib.linux-armv7l-cpython-39/nngt/lib 2024-01-28T12:03:07,945 copying ./nngt/lib/nngt_config.py -> build/lib.linux-armv7l-cpython-39/nngt/lib 2024-01-28T12:03:07,948 copying ./nngt/lib/sorting.py -> build/lib.linux-armv7l-cpython-39/nngt/lib 2024-01-28T12:03:07,950 copying ./nngt/lib/errors.py -> build/lib.linux-armv7l-cpython-39/nngt/lib 2024-01-28T12:03:07,951 copying ./nngt/lib/__init__.py -> build/lib.linux-armv7l-cpython-39/nngt/lib 2024-01-28T12:03:07,953 copying ./nngt/lib/graph_helpers.py -> build/lib.linux-armv7l-cpython-39/nngt/lib 2024-01-28T12:03:07,955 copying ./nngt/lib/decorator.py -> build/lib.linux-armv7l-cpython-39/nngt/lib 2024-01-28T12:03:07,957 copying ./nngt/lib/_frozendict.py -> build/lib.linux-armv7l-cpython-39/nngt/lib 2024-01-28T12:03:07,959 copying ./nngt/lib/converters.py -> build/lib.linux-armv7l-cpython-39/nngt/lib 2024-01-28T12:03:07,960 copying ./nngt/lib/rng_tools.py -> build/lib.linux-armv7l-cpython-39/nngt/lib 2024-01-28T12:03:07,963 copying ./nngt/lib/connect_tools.py -> build/lib.linux-armv7l-cpython-39/nngt/lib 2024-01-28T12:03:07,965 copying ./nngt/lib/constants.py -> build/lib.linux-armv7l-cpython-39/nngt/lib 2024-01-28T12:03:07,966 copying ./nngt/lib/graph_backends.py -> build/lib.linux-armv7l-cpython-39/nngt/lib 2024-01-28T12:03:07,968 copying ./nngt/lib/test_functions.py -> build/lib.linux-armv7l-cpython-39/nngt/lib 2024-01-28T12:03:07,971 creating build/lib.linux-armv7l-cpython-39/nngt/io 2024-01-28T12:03:07,972 copying ./nngt/io/loading_helpers.py -> build/lib.linux-armv7l-cpython-39/nngt/io 2024-01-28T12:03:07,974 copying ./nngt/io/io_helpers.py -> build/lib.linux-armv7l-cpython-39/nngt/io 2024-01-28T12:03:07,976 copying ./nngt/io/__init__.py -> build/lib.linux-armv7l-cpython-39/nngt/io 2024-01-28T12:03:07,977 copying ./nngt/io/saving_helpers.py -> build/lib.linux-armv7l-cpython-39/nngt/io 2024-01-28T12:03:07,979 copying ./nngt/io/graph_saving.py -> build/lib.linux-armv7l-cpython-39/nngt/io 2024-01-28T12:03:07,982 copying ./nngt/io/graph_loading.py -> build/lib.linux-armv7l-cpython-39/nngt/io 2024-01-28T12:03:07,985 creating build/lib.linux-armv7l-cpython-39/nngt/analysis 2024-01-28T12:03:07,986 copying ./nngt/analysis/activity_analysis.py -> build/lib.linux-armv7l-cpython-39/nngt/analysis 2024-01-28T12:03:07,988 copying ./nngt/analysis/graph_analysis.py -> build/lib.linux-armv7l-cpython-39/nngt/analysis 2024-01-28T12:03:07,991 copying ./nngt/analysis/clustering.py -> build/lib.linux-armv7l-cpython-39/nngt/analysis 2024-01-28T12:03:07,994 copying ./nngt/analysis/ig_functions.py -> build/lib.linux-armv7l-cpython-39/nngt/analysis 2024-01-28T12:03:07,996 copying ./nngt/analysis/nx_functions.py -> build/lib.linux-armv7l-cpython-39/nngt/analysis 2024-01-28T12:03:07,999 copying ./nngt/analysis/__init__.py -> build/lib.linux-armv7l-cpython-39/nngt/analysis 2024-01-28T12:03:08,000 copying ./nngt/analysis/bayesian_blocks.py -> build/lib.linux-armv7l-cpython-39/nngt/analysis 2024-01-28T12:03:08,003 copying ./nngt/analysis/gt_functions.py -> build/lib.linux-armv7l-cpython-39/nngt/analysis 2024-01-28T12:03:08,005 copying ./nngt/analysis/nngt_functions.py -> build/lib.linux-armv7l-cpython-39/nngt/analysis 2024-01-28T12:03:08,008 creating build/lib.linux-armv7l-cpython-39/nngt/generation 2024-01-28T12:03:08,009 copying ./nngt/generation/connectors.py -> build/lib.linux-armv7l-cpython-39/nngt/generation 2024-01-28T12:03:08,011 copying ./nngt/generation/__init__.py -> build/lib.linux-armv7l-cpython-39/nngt/generation 2024-01-28T12:03:08,013 copying ./nngt/generation/mpi_connect.py -> build/lib.linux-armv7l-cpython-39/nngt/generation 2024-01-28T12:03:08,015 copying ./nngt/generation/connect_algorithms.py -> build/lib.linux-armv7l-cpython-39/nngt/generation 2024-01-28T12:03:08,018 copying ./nngt/generation/graph_connectivity.py -> build/lib.linux-armv7l-cpython-39/nngt/generation 2024-01-28T12:03:08,021 copying ./nngt/generation/rewiring.py -> build/lib.linux-armv7l-cpython-39/nngt/generation 2024-01-28T12:03:08,024 creating build/lib.linux-armv7l-cpython-39/nngt/database 2024-01-28T12:03:08,025 copying ./nngt/database/db_main.py -> build/lib.linux-armv7l-cpython-39/nngt/database 2024-01-28T12:03:08,027 copying ./nngt/database/csv_utils.py -> build/lib.linux-armv7l-cpython-39/nngt/database 2024-01-28T12:03:08,029 copying ./nngt/database/__init__.py -> build/lib.linux-armv7l-cpython-39/nngt/database 2024-01-28T12:03:08,031 copying ./nngt/database/pickle_field.py -> build/lib.linux-armv7l-cpython-39/nngt/database 2024-01-28T12:03:08,032 copying ./nngt/database/db_generation.py -> build/lib.linux-armv7l-cpython-39/nngt/database 2024-01-28T12:03:08,035 creating build/lib.linux-armv7l-cpython-39/nngt/plot/chord_diag 2024-01-28T12:03:08,036 copying ./nngt/plot/chord_diag/__init__.py -> build/lib.linux-armv7l-cpython-39/nngt/plot/chord_diag 2024-01-28T12:03:08,038 copying ./nngt/plot/chord_diag/utilities.py -> build/lib.linux-armv7l-cpython-39/nngt/plot/chord_diag 2024-01-28T12:03:08,040 copying ./nngt/plot/chord_diag/gradient.py -> build/lib.linux-armv7l-cpython-39/nngt/plot/chord_diag 2024-01-28T12:03:08,041 copying ./nngt/plot/chord_diag/chord_diagram.py -> build/lib.linux-armv7l-cpython-39/nngt/plot/chord_diag 2024-01-28T12:03:08,044 copying ./nngt/plot/chord_diag/example.py -> build/lib.linux-armv7l-cpython-39/nngt/plot/chord_diag 2024-01-28T12:03:08,046 creating build/lib.linux-armv7l-cpython-39/nngt/geometry/examples 2024-01-28T12:03:08,047 copying ./nngt/geometry/examples/load_shapes.py -> build/lib.linux-armv7l-cpython-39/nngt/geometry/examples 2024-01-28T12:03:08,049 copying ./nngt/geometry/examples/load_culture.py -> build/lib.linux-armv7l-cpython-39/nngt/geometry/examples 2024-01-28T12:03:08,051 copying ./nngt/geometry/examples/backup_shape.py -> build/lib.linux-armv7l-cpython-39/nngt/geometry/examples 2024-01-28T12:03:08,052 copying ./nngt/geometry/examples/gen_obstacles.py -> build/lib.linux-armv7l-cpython-39/nngt/geometry/examples 2024-01-28T12:03:08,054 creating build/lib.linux-armv7l-cpython-39/nngt/geometry/dxf_import 2024-01-28T12:03:08,055 copying ./nngt/geometry/dxf_import/homcoord.py -> build/lib.linux-armv7l-cpython-39/nngt/geometry/dxf_import 2024-01-28T12:03:08,058 copying ./nngt/geometry/dxf_import/__init__.py -> build/lib.linux-armv7l-cpython-39/nngt/geometry/dxf_import 2024-01-28T12:03:08,060 copying ./nngt/geometry/dxf_import/read_dxf.py -> build/lib.linux-armv7l-cpython-39/nngt/geometry/dxf_import 2024-01-28T12:03:08,071 copying ./nngt/nngt.conf.default -> build/lib.linux-armv7l-cpython-39/nngt 2024-01-28T12:03:08,073 copying ./nngt/geometry/README.md -> build/lib.linux-armv7l-cpython-39/nngt/geometry 2024-01-28T12:03:08,075 copying ./nngt/generation/cconnect.pyxbld -> build/lib.linux-armv7l-cpython-39/nngt/generation 2024-01-28T12:03:08,077 copying ./nngt/generation/cconnect.pyx -> build/lib.linux-armv7l-cpython-39/nngt/generation 2024-01-28T12:03:08,080 copying ./nngt/generation/cconnect.pxd -> build/lib.linux-armv7l-cpython-39/nngt/generation 2024-01-28T12:03:08,083 copying ./nngt/generation/func_connect.cpp -> build/lib.linux-armv7l-cpython-39/nngt/generation 2024-01-28T12:03:08,086 copying ./nngt/generation/func_connect.h -> build/lib.linux-armv7l-cpython-39/nngt/generation 2024-01-28T12:03:08,088 copying ./nngt/plot/chord_diag/README.md -> build/lib.linux-armv7l-cpython-39/nngt/plot/chord_diag 2024-01-28T12:03:08,099 running build_ext 2024-01-28T12:03:08,106 building 'nngt.generation.cconnect' extension 2024-01-28T12:03:08,106 creating build/temp.linux-armv7l-cpython-39 2024-01-28T12:03:08,107 creating build/temp.linux-armv7l-cpython-39/nngt 2024-01-28T12:03:08,108 creating build/temp.linux-armv7l-cpython-39/nngt/generation 2024-01-28T12:03:08,109 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I./nngt/generation -I./nngt/generation/ -I/tmp/pip-build-env-z5zg2jmt/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c ./nngt/generation/cconnect.cpp -o build/temp.linux-armv7l-cpython-39/./nngt/generation/cconnect.o 2024-01-28T12:03:08,532 In file included from /tmp/pip-build-env-z5zg2jmt/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2024-01-28T12:03:08,533 from /tmp/pip-build-env-z5zg2jmt/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2024-01-28T12:03:08,533 from /tmp/pip-build-env-z5zg2jmt/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5, 2024-01-28T12:03:08,533 from ./nngt/generation/cconnect.cpp:1246: 2024-01-28T12:03:08,533 /tmp/pip-build-env-z5zg2jmt/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2024-01-28T12:03:08,533 17 | #warning "Using deprecated NumPy API, disable it with " \ 2024-01-28T12:03:08,533 | ^~~~~~~ 2024-01-28T12:04:10,291 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I./nngt/generation -I./nngt/generation/ -I/tmp/pip-build-env-z5zg2jmt/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c ./nngt/generation/func_connect.cpp -o build/temp.linux-armv7l-cpython-39/./nngt/generation/func_connect.o 2024-01-28T12:04:10,604 ./nngt/generation/func_connect.cpp:232: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 2024-01-28T12:04:10,605 232 | #pragma omp parallel num_threads(omp) 2024-01-28T12:04:10,605 | 2024-01-28T12:04:10,605 ./nngt/generation/func_connect.cpp:237: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 2024-01-28T12:04:10,605 237 | #pragma omp for schedule(static) 2024-01-28T12:04:10,605 | 2024-01-28T12:04:10,605 ./nngt/generation/func_connect.cpp:324: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 2024-01-28T12:04:10,606 324 | #pragma omp parallel num_threads(num_omp) 2024-01-28T12:04:10,606 | 2024-01-28T12:04:10,606 ./nngt/generation/func_connect.cpp:340: warning: ignoring ‘#pragma omp single’ [-Wunknown-pragmas] 2024-01-28T12:04:10,606 340 | #pragma omp single 2024-01-28T12:04:10,606 | 2024-01-28T12:04:10,606 ./nngt/generation/func_connect.cpp:344: warning: ignoring ‘#pragma omp barrier’ [-Wunknown-pragmas] 2024-01-28T12:04:10,607 344 | #pragma omp barrier 2024-01-28T12:04:10,607 | 2024-01-28T12:04:10,607 ./nngt/generation/func_connect.cpp:345: warning: ignoring ‘#pragma omp flush’ [-Wunknown-pragmas] 2024-01-28T12:04:10,607 345 | #pragma omp flush(current_enum) 2024-01-28T12:04:10,607 | 2024-01-28T12:04:10,607 ./nngt/generation/func_connect.cpp:349: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 2024-01-28T12:04:10,608 349 | #pragma omp for schedule(static) 2024-01-28T12:04:10,608 | 2024-01-28T12:04:10,608 ./nngt/generation/func_connect.cpp:401: warning: ignoring ‘#pragma omp atomic’ [-Wunknown-pragmas] 2024-01-28T12:04:10,608 401 | #pragma omp atomic 2024-01-28T12:04:10,608 | 2024-01-28T12:04:10,608 ./nngt/generation/func_connect.cpp:404: warning: ignoring ‘#pragma omp barrier’ [-Wunknown-pragmas] 2024-01-28T12:04:10,609 404 | #pragma omp barrier // ensure everyone is ready 2024-01-28T12:04:10,609 | 2024-01-28T12:04:10,609 ./nngt/generation/func_connect.cpp:405: warning: ignoring ‘#pragma omp flush’ [-Wunknown-pragmas] 2024-01-28T12:04:10,609 405 | #pragma omp flush(current_enum) // and gets last value 2024-01-28T12:04:10,609 | 2024-01-28T12:04:10,609 ./nngt/generation/func_connect.cpp:406: warning: ignoring ‘#pragma omp barrier’ [-Wunknown-pragmas] 2024-01-28T12:04:10,609 406 | #pragma omp barrier // for sure 2024-01-28T12:04:10,610 | 2024-01-28T12:04:10,610 ./nngt/generation/func_connect.cpp:410: warning: ignoring ‘#pragma omp single’ [-Wunknown-pragmas] 2024-01-28T12:04:10,610 410 | #pragma omp single 2024-01-28T12:04:10,610 | 2024-01-28T12:04:10,610 ./nngt/generation/func_connect.cpp:420: warning: ignoring ‘#pragma omp barrier’ [-Wunknown-pragmas] 2024-01-28T12:04:10,610 420 | #pragma omp barrier 2024-01-28T12:04:10,611 | 2024-01-28T12:04:10,611 ./nngt/generation/func_connect.cpp:422: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 2024-01-28T12:04:10,611 422 | #pragma omp critical 2024-01-28T12:04:10,611 | 2024-01-28T12:04:10,611 ./nngt/generation/func_connect.cpp:444: warning: ignoring ‘#pragma omp flush’ [-Wunknown-pragmas] 2024-01-28T12:04:10,611 444 | #pragma omp flush(ecount_fill) 2024-01-28T12:04:10,611 | 2024-01-28T12:04:11,752 ./nngt/generation/func_connect.cpp: In function ‘void generation::_gen_edges(int64_t*, const std::vector&, const std::vector&, const std::vector&, const std::vector >&, unsigned int, bool, bool, std::vector&)’: 2024-01-28T12:04:11,752 ./nngt/generation/func_connect.cpp:229:9: warning: unused variable ‘omp’ [-Wunused-variable] 2024-01-28T12:04:11,752 229 | int omp = seeds.size(); 2024-01-28T12:04:11,752 | ^~~ 2024-01-28T12:04:11,773 ./nngt/generation/func_connect.cpp: In function ‘void generation::_cdistance_rule(int64_t*, const std::vector&, const std::vector >&, const string&, float, float, const std::vector&, const std::vector&, size_t, size_t, const std::vector >&, std::vector&, bool, bool, std::vector&)’: 2024-01-28T12:04:11,774 ./nngt/generation/func_connect.cpp:271:9: warning: unused variable ‘num_omp’ [-Wunused-variable] 2024-01-28T12:04:11,774 271 | int num_omp = seeds.size(); 2024-01-28T12:04:11,774 | ^~~~~~~ 2024-01-28T12:04:15,441 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/./nngt/generation/cconnect.o build/temp.linux-armv7l-cpython-39/./nngt/generation/func_connect.o -L./nngt/generation/ -L/usr/lib -L/usr/lib -lgomp -o build/lib.linux-armv7l-cpython-39/nngt/generation/cconnect.cpython-39-arm-linux-gnueabihf.so 2024-01-28T12:04:15,895 installing to build/bdist.linux-armv7l/wheel 2024-01-28T12:04:15,896 running install 2024-01-28T12:04:15,921 running install_lib 2024-01-28T12:04:15,927 creating build/bdist.linux-armv7l 2024-01-28T12:04:15,927 creating build/bdist.linux-armv7l/wheel 2024-01-28T12:04:15,929 creating build/bdist.linux-armv7l/wheel/nngt 2024-01-28T12:04:15,931 creating build/bdist.linux-armv7l/wheel/nngt/core 2024-01-28T12:04:15,932 copying build/lib.linux-armv7l-cpython-39/nngt/core/spatial_graph.py -> build/bdist.linux-armv7l/wheel/nngt/core 2024-01-28T12:04:15,934 copying build/lib.linux-armv7l-cpython-39/nngt/core/gt_graph.py -> build/bdist.linux-armv7l/wheel/nngt/core 2024-01-28T12:04:15,936 copying build/lib.linux-armv7l-cpython-39/nngt/core/nx_graph.py -> build/bdist.linux-armv7l/wheel/nngt/core 2024-01-28T12:04:15,939 copying build/lib.linux-armv7l-cpython-39/nngt/core/group_structure.py -> build/bdist.linux-armv7l/wheel/nngt/core 2024-01-28T12:04:15,942 copying build/lib.linux-armv7l-cpython-39/nngt/core/graph_interface.py -> build/bdist.linux-armv7l/wheel/nngt/core 2024-01-28T12:04:15,944 copying build/lib.linux-armv7l-cpython-39/nngt/core/__init__.py -> build/bdist.linux-armv7l/wheel/nngt/core 2024-01-28T12:04:15,945 copying build/lib.linux-armv7l-cpython-39/nngt/core/connections.py -> build/bdist.linux-armv7l/wheel/nngt/core 2024-01-28T12:04:15,947 copying build/lib.linux-armv7l-cpython-39/nngt/core/neural_pop_group.py -> build/bdist.linux-armv7l/wheel/nngt/core 2024-01-28T12:04:15,951 copying build/lib.linux-armv7l-cpython-39/nngt/core/graph.py -> build/bdist.linux-armv7l/wheel/nngt/core 2024-01-28T12:04:15,955 copying build/lib.linux-armv7l-cpython-39/nngt/core/nngt_graph.py -> build/bdist.linux-armv7l/wheel/nngt/core 2024-01-28T12:04:15,958 copying build/lib.linux-armv7l-cpython-39/nngt/core/ig_graph.py -> build/bdist.linux-armv7l/wheel/nngt/core 2024-01-28T12:04:15,961 copying build/lib.linux-armv7l-cpython-39/nngt/core/networks.py -> build/bdist.linux-armv7l/wheel/nngt/core 2024-01-28T12:04:15,964 creating build/bdist.linux-armv7l/wheel/nngt/plot 2024-01-28T12:04:15,964 copying build/lib.linux-armv7l-cpython-39/nngt/plot/hive_helpers.py -> build/bdist.linux-armv7l/wheel/nngt/plot 2024-01-28T12:04:15,967 copying build/lib.linux-armv7l-cpython-39/nngt/plot/plt_networks.py -> build/bdist.linux-armv7l/wheel/nngt/plot 2024-01-28T12:04:15,971 copying build/lib.linux-armv7l-cpython-39/nngt/plot/animations.py -> build/bdist.linux-armv7l/wheel/nngt/plot 2024-01-28T12:04:15,974 copying build/lib.linux-armv7l-cpython-39/nngt/plot/__init__.py -> build/bdist.linux-armv7l/wheel/nngt/plot 2024-01-28T12:04:15,976 copying build/lib.linux-armv7l-cpython-39/nngt/plot/custom_plt.py -> build/bdist.linux-armv7l/wheel/nngt/plot 2024-01-28T12:04:15,978 copying build/lib.linux-armv7l-cpython-39/nngt/plot/plt_properties.py -> build/bdist.linux-armv7l/wheel/nngt/plot 2024-01-28T12:04:15,982 creating build/bdist.linux-armv7l/wheel/nngt/plot/chord_diag 2024-01-28T12:04:15,982 copying build/lib.linux-armv7l-cpython-39/nngt/plot/chord_diag/__init__.py -> build/bdist.linux-armv7l/wheel/nngt/plot/chord_diag 2024-01-28T12:04:15,984 copying build/lib.linux-armv7l-cpython-39/nngt/plot/chord_diag/utilities.py -> build/bdist.linux-armv7l/wheel/nngt/plot/chord_diag 2024-01-28T12:04:15,986 copying build/lib.linux-armv7l-cpython-39/nngt/plot/chord_diag/gradient.py -> build/bdist.linux-armv7l/wheel/nngt/plot/chord_diag 2024-01-28T12:04:15,988 copying build/lib.linux-armv7l-cpython-39/nngt/plot/chord_diag/chord_diagram.py -> build/bdist.linux-armv7l/wheel/nngt/plot/chord_diag 2024-01-28T12:04:15,991 copying build/lib.linux-armv7l-cpython-39/nngt/plot/chord_diag/README.md -> build/bdist.linux-armv7l/wheel/nngt/plot/chord_diag 2024-01-28T12:04:15,993 copying build/lib.linux-armv7l-cpython-39/nngt/plot/chord_diag/example.py -> build/bdist.linux-armv7l/wheel/nngt/plot/chord_diag 2024-01-28T12:04:15,996 creating build/bdist.linux-armv7l/wheel/nngt/simulation 2024-01-28T12:04:15,997 copying build/lib.linux-armv7l-cpython-39/nngt/simulation/nest_plot.py -> build/bdist.linux-armv7l/wheel/nngt/simulation 2024-01-28T12:04:16,000 copying build/lib.linux-armv7l-cpython-39/nngt/simulation/__init__.py -> build/bdist.linux-armv7l/wheel/nngt/simulation 2024-01-28T12:04:16,001 copying build/lib.linux-armv7l-cpython-39/nngt/simulation/nest_graph.py -> build/bdist.linux-armv7l/wheel/nngt/simulation 2024-01-28T12:04:16,004 copying build/lib.linux-armv7l-cpython-39/nngt/simulation/nest_activity.py -> build/bdist.linux-armv7l/wheel/nngt/simulation 2024-01-28T12:04:16,006 copying build/lib.linux-armv7l-cpython-39/nngt/simulation/nest_utils.py -> build/bdist.linux-armv7l/wheel/nngt/simulation 2024-01-28T12:04:16,009 copying build/lib.linux-armv7l-cpython-39/nngt/__init__.py -> build/bdist.linux-armv7l/wheel/nngt 2024-01-28T12:04:16,011 copying build/lib.linux-armv7l-cpython-39/nngt/nngt.conf.default -> build/bdist.linux-armv7l/wheel/nngt 2024-01-28T12:04:16,013 creating build/bdist.linux-armv7l/wheel/nngt/geometry 2024-01-28T12:04:16,014 copying build/lib.linux-armv7l-cpython-39/nngt/geometry/dxftools.py -> build/bdist.linux-armv7l/wheel/nngt/geometry 2024-01-28T12:04:16,016 copying build/lib.linux-armv7l-cpython-39/nngt/geometry/units.py -> build/bdist.linux-armv7l/wheel/nngt/geometry 2024-01-28T12:04:16,018 copying build/lib.linux-armv7l-cpython-39/nngt/geometry/shape_io.py -> build/bdist.linux-armv7l/wheel/nngt/geometry 2024-01-28T12:04:16,020 copying build/lib.linux-armv7l-cpython-39/nngt/geometry/tools.py -> build/bdist.linux-armv7l/wheel/nngt/geometry 2024-01-28T12:04:16,023 copying build/lib.linux-armv7l-cpython-39/nngt/geometry/__init__.py -> build/bdist.linux-armv7l/wheel/nngt/geometry 2024-01-28T12:04:16,024 copying build/lib.linux-armv7l-cpython-39/nngt/geometry/plot.py -> build/bdist.linux-armv7l/wheel/nngt/geometry 2024-01-28T12:04:16,026 copying build/lib.linux-armv7l-cpython-39/nngt/geometry/pync_log.py -> build/bdist.linux-armv7l/wheel/nngt/geometry 2024-01-28T12:04:16,029 creating build/bdist.linux-armv7l/wheel/nngt/geometry/examples 2024-01-28T12:04:16,029 copying build/lib.linux-armv7l-cpython-39/nngt/geometry/examples/load_shapes.py -> build/bdist.linux-armv7l/wheel/nngt/geometry/examples 2024-01-28T12:04:16,031 copying build/lib.linux-armv7l-cpython-39/nngt/geometry/examples/load_culture.py -> build/bdist.linux-armv7l/wheel/nngt/geometry/examples 2024-01-28T12:04:16,033 copying build/lib.linux-armv7l-cpython-39/nngt/geometry/examples/backup_shape.py -> build/bdist.linux-armv7l/wheel/nngt/geometry/examples 2024-01-28T12:04:16,035 copying build/lib.linux-armv7l-cpython-39/nngt/geometry/examples/gen_obstacles.py -> build/bdist.linux-armv7l/wheel/nngt/geometry/examples 2024-01-28T12:04:16,036 copying build/lib.linux-armv7l-cpython-39/nngt/geometry/geom_utils.py -> build/bdist.linux-armv7l/wheel/nngt/geometry 2024-01-28T12:04:16,038 copying build/lib.linux-armv7l-cpython-39/nngt/geometry/svgtools.py -> build/bdist.linux-armv7l/wheel/nngt/geometry 2024-01-28T12:04:16,040 copying build/lib.linux-armv7l-cpython-39/nngt/geometry/backup_shape.py -> build/bdist.linux-armv7l/wheel/nngt/geometry 2024-01-28T12:04:16,043 copying build/lib.linux-armv7l-cpython-39/nngt/geometry/triangulate.py -> build/bdist.linux-armv7l/wheel/nngt/geometry 2024-01-28T12:04:16,045 creating build/bdist.linux-armv7l/wheel/nngt/geometry/dxf_import 2024-01-28T12:04:16,046 copying build/lib.linux-armv7l-cpython-39/nngt/geometry/dxf_import/homcoord.py -> build/bdist.linux-armv7l/wheel/nngt/geometry/dxf_import 2024-01-28T12:04:16,048 copying build/lib.linux-armv7l-cpython-39/nngt/geometry/dxf_import/__init__.py -> build/bdist.linux-armv7l/wheel/nngt/geometry/dxf_import 2024-01-28T12:04:16,050 copying build/lib.linux-armv7l-cpython-39/nngt/geometry/dxf_import/read_dxf.py -> build/bdist.linux-armv7l/wheel/nngt/geometry/dxf_import 2024-01-28T12:04:16,052 copying build/lib.linux-armv7l-cpython-39/nngt/geometry/shape.py -> build/bdist.linux-armv7l/wheel/nngt/geometry 2024-01-28T12:04:16,055 copying build/lib.linux-armv7l-cpython-39/nngt/geometry/README.md -> build/bdist.linux-armv7l/wheel/nngt/geometry 2024-01-28T12:04:16,058 creating build/bdist.linux-armv7l/wheel/nngt/geospatial 2024-01-28T12:04:16,058 copying build/lib.linux-armv7l-cpython-39/nngt/geospatial/__init__.py -> build/bdist.linux-armv7l/wheel/nngt/geospatial 2024-01-28T12:04:16,060 copying build/lib.linux-armv7l-cpython-39/nngt/geospatial/plot.py -> build/bdist.linux-armv7l/wheel/nngt/geospatial 2024-01-28T12:04:16,062 copying build/lib.linux-armv7l-cpython-39/nngt/geospatial/countries.py -> build/bdist.linux-armv7l/wheel/nngt/geospatial 2024-01-28T12:04:16,065 creating build/bdist.linux-armv7l/wheel/nngt/lib 2024-01-28T12:04:16,066 copying build/lib.linux-armv7l-cpython-39/nngt/lib/db_tools.py -> build/bdist.linux-armv7l/wheel/nngt/lib 2024-01-28T12:04:16,068 copying build/lib.linux-armv7l-cpython-39/nngt/lib/logger.py -> build/bdist.linux-armv7l/wheel/nngt/lib 2024-01-28T12:04:16,069 copying build/lib.linux-armv7l-cpython-39/nngt/lib/nngt_config.py -> build/bdist.linux-armv7l/wheel/nngt/lib 2024-01-28T12:04:16,072 copying build/lib.linux-armv7l-cpython-39/nngt/lib/sorting.py -> build/bdist.linux-armv7l/wheel/nngt/lib 2024-01-28T12:04:16,074 copying build/lib.linux-armv7l-cpython-39/nngt/lib/errors.py -> build/bdist.linux-armv7l/wheel/nngt/lib 2024-01-28T12:04:16,076 copying build/lib.linux-armv7l-cpython-39/nngt/lib/__init__.py -> build/bdist.linux-armv7l/wheel/nngt/lib 2024-01-28T12:04:16,077 copying build/lib.linux-armv7l-cpython-39/nngt/lib/graph_helpers.py -> build/bdist.linux-armv7l/wheel/nngt/lib 2024-01-28T12:04:16,080 copying build/lib.linux-armv7l-cpython-39/nngt/lib/decorator.py -> build/bdist.linux-armv7l/wheel/nngt/lib 2024-01-28T12:04:16,082 copying build/lib.linux-armv7l-cpython-39/nngt/lib/_frozendict.py -> build/bdist.linux-armv7l/wheel/nngt/lib 2024-01-28T12:04:16,084 copying build/lib.linux-armv7l-cpython-39/nngt/lib/converters.py -> build/bdist.linux-armv7l/wheel/nngt/lib 2024-01-28T12:04:16,085 copying build/lib.linux-armv7l-cpython-39/nngt/lib/rng_tools.py -> build/bdist.linux-armv7l/wheel/nngt/lib 2024-01-28T12:04:16,088 copying build/lib.linux-armv7l-cpython-39/nngt/lib/connect_tools.py -> build/bdist.linux-armv7l/wheel/nngt/lib 2024-01-28T12:04:16,091 copying build/lib.linux-armv7l-cpython-39/nngt/lib/constants.py -> build/bdist.linux-armv7l/wheel/nngt/lib 2024-01-28T12:04:16,092 copying build/lib.linux-armv7l-cpython-39/nngt/lib/graph_backends.py -> build/bdist.linux-armv7l/wheel/nngt/lib 2024-01-28T12:04:16,094 copying build/lib.linux-armv7l-cpython-39/nngt/lib/test_functions.py -> build/bdist.linux-armv7l/wheel/nngt/lib 2024-01-28T12:04:16,097 creating build/bdist.linux-armv7l/wheel/nngt/io 2024-01-28T12:04:16,098 copying build/lib.linux-armv7l-cpython-39/nngt/io/loading_helpers.py -> build/bdist.linux-armv7l/wheel/nngt/io 2024-01-28T12:04:16,100 copying build/lib.linux-armv7l-cpython-39/nngt/io/io_helpers.py -> build/bdist.linux-armv7l/wheel/nngt/io 2024-01-28T12:04:16,102 copying build/lib.linux-armv7l-cpython-39/nngt/io/__init__.py -> build/bdist.linux-armv7l/wheel/nngt/io 2024-01-28T12:04:16,103 copying build/lib.linux-armv7l-cpython-39/nngt/io/saving_helpers.py -> build/bdist.linux-armv7l/wheel/nngt/io 2024-01-28T12:04:16,105 copying build/lib.linux-armv7l-cpython-39/nngt/io/graph_saving.py -> build/bdist.linux-armv7l/wheel/nngt/io 2024-01-28T12:04:16,107 copying build/lib.linux-armv7l-cpython-39/nngt/io/graph_loading.py -> build/bdist.linux-armv7l/wheel/nngt/io 2024-01-28T12:04:16,110 creating build/bdist.linux-armv7l/wheel/nngt/analysis 2024-01-28T12:04:16,111 copying build/lib.linux-armv7l-cpython-39/nngt/analysis/activity_analysis.py -> build/bdist.linux-armv7l/wheel/nngt/analysis 2024-01-28T12:04:16,113 copying build/lib.linux-armv7l-cpython-39/nngt/analysis/graph_analysis.py -> build/bdist.linux-armv7l/wheel/nngt/analysis 2024-01-28T12:04:16,116 copying build/lib.linux-armv7l-cpython-39/nngt/analysis/clustering.py -> build/bdist.linux-armv7l/wheel/nngt/analysis 2024-01-28T12:04:16,118 copying build/lib.linux-armv7l-cpython-39/nngt/analysis/ig_functions.py -> build/bdist.linux-armv7l/wheel/nngt/analysis 2024-01-28T12:04:16,121 copying build/lib.linux-armv7l-cpython-39/nngt/analysis/nx_functions.py -> build/bdist.linux-armv7l/wheel/nngt/analysis 2024-01-28T12:04:16,123 copying build/lib.linux-armv7l-cpython-39/nngt/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/nngt/analysis 2024-01-28T12:04:16,125 copying build/lib.linux-armv7l-cpython-39/nngt/analysis/bayesian_blocks.py -> build/bdist.linux-armv7l/wheel/nngt/analysis 2024-01-28T12:04:16,127 copying build/lib.linux-armv7l-cpython-39/nngt/analysis/gt_functions.py -> build/bdist.linux-armv7l/wheel/nngt/analysis 2024-01-28T12:04:16,130 copying build/lib.linux-armv7l-cpython-39/nngt/analysis/nngt_functions.py -> build/bdist.linux-armv7l/wheel/nngt/analysis 2024-01-28T12:04:16,133 creating build/bdist.linux-armv7l/wheel/nngt/generation 2024-01-28T12:04:16,133 copying build/lib.linux-armv7l-cpython-39/nngt/generation/connectors.py -> build/bdist.linux-armv7l/wheel/nngt/generation 2024-01-28T12:04:16,136 copying build/lib.linux-armv7l-cpython-39/nngt/generation/cconnect.pyxbld -> build/bdist.linux-armv7l/wheel/nngt/generation 2024-01-28T12:04:16,137 copying build/lib.linux-armv7l-cpython-39/nngt/generation/func_connect.cpp -> build/bdist.linux-armv7l/wheel/nngt/generation 2024-01-28T12:04:16,140 copying build/lib.linux-armv7l-cpython-39/nngt/generation/cconnect.pyx -> build/bdist.linux-armv7l/wheel/nngt/generation 2024-01-28T12:04:16,142 copying build/lib.linux-armv7l-cpython-39/nngt/generation/func_connect.h -> build/bdist.linux-armv7l/wheel/nngt/generation 2024-01-28T12:04:16,144 copying build/lib.linux-armv7l-cpython-39/nngt/generation/__init__.py -> build/bdist.linux-armv7l/wheel/nngt/generation 2024-01-28T12:04:16,146 copying build/lib.linux-armv7l-cpython-39/nngt/generation/mpi_connect.py -> build/bdist.linux-armv7l/wheel/nngt/generation 2024-01-28T12:04:16,148 copying build/lib.linux-armv7l-cpython-39/nngt/generation/cconnect.pxd -> build/bdist.linux-armv7l/wheel/nngt/generation 2024-01-28T12:04:16,149 copying build/lib.linux-armv7l-cpython-39/nngt/generation/connect_algorithms.py -> build/bdist.linux-armv7l/wheel/nngt/generation 2024-01-28T12:04:16,152 copying build/lib.linux-armv7l-cpython-39/nngt/generation/graph_connectivity.py -> build/bdist.linux-armv7l/wheel/nngt/generation 2024-01-28T12:04:16,155 copying build/lib.linux-armv7l-cpython-39/nngt/generation/rewiring.py -> build/bdist.linux-armv7l/wheel/nngt/generation 2024-01-28T12:04:16,158 copying build/lib.linux-armv7l-cpython-39/nngt/generation/cconnect.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/nngt/generation 2024-01-28T12:04:16,218 creating build/bdist.linux-armv7l/wheel/nngt/database 2024-01-28T12:04:16,219 copying build/lib.linux-armv7l-cpython-39/nngt/database/db_main.py -> build/bdist.linux-armv7l/wheel/nngt/database 2024-01-28T12:04:16,222 copying build/lib.linux-armv7l-cpython-39/nngt/database/csv_utils.py -> build/bdist.linux-armv7l/wheel/nngt/database 2024-01-28T12:04:16,224 copying build/lib.linux-armv7l-cpython-39/nngt/database/__init__.py -> build/bdist.linux-armv7l/wheel/nngt/database 2024-01-28T12:04:16,225 copying build/lib.linux-armv7l-cpython-39/nngt/database/pickle_field.py -> build/bdist.linux-armv7l/wheel/nngt/database 2024-01-28T12:04:16,227 copying build/lib.linux-armv7l-cpython-39/nngt/database/db_generation.py -> build/bdist.linux-armv7l/wheel/nngt/database 2024-01-28T12:04:16,229 running install_egg_info 2024-01-28T12:04:16,233 running egg_info 2024-01-28T12:04:16,238 writing NNGT.egg-info/PKG-INFO 2024-01-28T12:04:16,240 /tmp/pip-build-env-z5zg2jmt/overlay/lib/python3.9/site-packages/setuptools/_core_metadata.py:157: SetuptoolsDeprecationWarning: Invalid config. 2024-01-28T12:04:16,240 !! 2024-01-28T12:04:16,241 ******************************************************************************** 2024-01-28T12:04:16,241 newlines are not allowed in `summary` and will break in the future 2024-01-28T12:04:16,241 ******************************************************************************** 2024-01-28T12:04:16,242 !! 2024-01-28T12:04:16,242 write_field('Summary', single_line(summary)) 2024-01-28T12:04:16,253 writing dependency_links to NNGT.egg-info/dependency_links.txt 2024-01-28T12:04:16,260 writing requirements to NNGT.egg-info/requires.txt 2024-01-28T12:04:16,261 writing top-level names to NNGT.egg-info/top_level.txt 2024-01-28T12:04:16,293 dependency /tmp/pip-build-env-z5zg2jmt/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-28T12:04:16,293 dependency /tmp/pip-build-env-z5zg2jmt/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-01-28T12:04:16,294 dependency /tmp/pip-build-env-z5zg2jmt/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-28T12:04:16,294 dependency /tmp/pip-build-env-z5zg2jmt/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-01-28T12:04:16,294 dependency /tmp/pip-build-env-z5zg2jmt/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-01-28T12:04:16,299 reading manifest file 'NNGT.egg-info/SOURCES.txt' 2024-01-28T12:04:16,304 reading manifest template 'MANIFEST.in' 2024-01-28T12:04:16,412 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2024-01-28T12:04:16,414 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2024-01-28T12:04:16,414 adding license file 'LICENSES/BSD-2-Clause.txt' 2024-01-28T12:04:16,414 adding license file 'LICENSES/CC-BY-SA-4.0.txt' 2024-01-28T12:04:16,414 adding license file 'LICENSES/CC0-1.0.txt' 2024-01-28T12:04:16,414 adding license file 'LICENSES/GPL-3.0-or-later.txt' 2024-01-28T12:04:16,415 adding license file 'LICENSES/Python-2.0.txt' 2024-01-28T12:04:16,422 writing manifest file 'NNGT.egg-info/SOURCES.txt' 2024-01-28T12:04:16,423 Copying NNGT.egg-info to build/bdist.linux-armv7l/wheel/NNGT-2.7.1-py3.9.egg-info 2024-01-28T12:04:16,434 running install_scripts 2024-01-28T12:04:16,504 creating build/bdist.linux-armv7l/wheel/NNGT-2.7.1.dist-info/WHEEL 2024-01-28T12:04:16,508 creating '/tmp/pip-wheel-d9qorvoi/.tmp-57v086hg/NNGT-2.7.1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-01-28T12:04:16,512 adding 'nngt/__init__.py' 2024-01-28T12:04:16,513 adding 'nngt/nngt.conf.default' 2024-01-28T12:04:16,515 adding 'nngt/analysis/__init__.py' 2024-01-28T12:04:16,517 adding 'nngt/analysis/activity_analysis.py' 2024-01-28T12:04:16,519 adding 'nngt/analysis/bayesian_blocks.py' 2024-01-28T12:04:16,523 adding 'nngt/analysis/clustering.py' 2024-01-28T12:04:16,528 adding 'nngt/analysis/graph_analysis.py' 2024-01-28T12:04:16,531 adding 'nngt/analysis/gt_functions.py' 2024-01-28T12:04:16,534 adding 'nngt/analysis/ig_functions.py' 2024-01-28T12:04:16,536 adding 'nngt/analysis/nngt_functions.py' 2024-01-28T12:04:16,539 adding 'nngt/analysis/nx_functions.py' 2024-01-28T12:04:16,540 adding 'nngt/core/__init__.py' 2024-01-28T12:04:16,542 adding 'nngt/core/connections.py' 2024-01-28T12:04:16,550 adding 'nngt/core/graph.py' 2024-01-28T12:04:16,552 adding 'nngt/core/graph_interface.py' 2024-01-28T12:04:16,556 adding 'nngt/core/group_structure.py' 2024-01-28T12:04:16,560 adding 'nngt/core/gt_graph.py' 2024-01-28T12:04:16,563 adding 'nngt/core/ig_graph.py' 2024-01-28T12:04:16,566 adding 'nngt/core/networks.py' 2024-01-28T12:04:16,571 adding 'nngt/core/neural_pop_group.py' 2024-01-28T12:04:16,576 adding 'nngt/core/nngt_graph.py' 2024-01-28T12:04:16,579 adding 'nngt/core/nx_graph.py' 2024-01-28T12:04:16,581 adding 'nngt/core/spatial_graph.py' 2024-01-28T12:04:16,583 adding 'nngt/database/__init__.py' 2024-01-28T12:04:16,585 adding 'nngt/database/csv_utils.py' 2024-01-28T12:04:16,587 adding 'nngt/database/db_generation.py' 2024-01-28T12:04:16,589 adding 'nngt/database/db_main.py' 2024-01-28T12:04:16,590 adding 'nngt/database/pickle_field.py' 2024-01-28T12:04:16,592 adding 'nngt/generation/__init__.py' 2024-01-28T12:04:17,201 adding 'nngt/generation/cconnect.cpython-39-arm-linux-gnueabihf.so' 2024-01-28T12:04:17,222 adding 'nngt/generation/cconnect.pxd' 2024-01-28T12:04:17,225 adding 'nngt/generation/cconnect.pyx' 2024-01-28T12:04:17,226 adding 'nngt/generation/cconnect.pyxbld' 2024-01-28T12:04:17,231 adding 'nngt/generation/connect_algorithms.py' 2024-01-28T12:04:17,233 adding 'nngt/generation/connectors.py' 2024-01-28T12:04:17,235 adding 'nngt/generation/func_connect.cpp' 2024-01-28T12:04:17,237 adding 'nngt/generation/func_connect.h' 2024-01-28T12:04:17,243 adding 'nngt/generation/graph_connectivity.py' 2024-01-28T12:04:17,245 adding 'nngt/generation/mpi_connect.py' 2024-01-28T12:04:17,248 adding 'nngt/generation/rewiring.py' 2024-01-28T12:04:17,250 adding 'nngt/geometry/README.md' 2024-01-28T12:04:17,251 adding 'nngt/geometry/__init__.py' 2024-01-28T12:04:17,254 adding 'nngt/geometry/backup_shape.py' 2024-01-28T12:04:17,255 adding 'nngt/geometry/dxftools.py' 2024-01-28T12:04:17,256 adding 'nngt/geometry/geom_utils.py' 2024-01-28T12:04:17,258 adding 'nngt/geometry/plot.py' 2024-01-28T12:04:17,259 adding 'nngt/geometry/pync_log.py' 2024-01-28T12:04:17,265 adding 'nngt/geometry/shape.py' 2024-01-28T12:04:17,267 adding 'nngt/geometry/shape_io.py' 2024-01-28T12:04:17,269 adding 'nngt/geometry/svgtools.py' 2024-01-28T12:04:17,270 adding 'nngt/geometry/tools.py' 2024-01-28T12:04:17,272 adding 'nngt/geometry/triangulate.py' 2024-01-28T12:04:17,273 adding 'nngt/geometry/units.py' 2024-01-28T12:04:17,275 adding 'nngt/geometry/dxf_import/__init__.py' 2024-01-28T12:04:17,278 adding 'nngt/geometry/dxf_import/homcoord.py' 2024-01-28T12:04:17,279 adding 'nngt/geometry/dxf_import/read_dxf.py' 2024-01-28T12:04:17,281 adding 'nngt/geometry/examples/backup_shape.py' 2024-01-28T12:04:17,283 adding 'nngt/geometry/examples/gen_obstacles.py' 2024-01-28T12:04:17,284 adding 'nngt/geometry/examples/load_culture.py' 2024-01-28T12:04:17,285 adding 'nngt/geometry/examples/load_shapes.py' 2024-01-28T12:04:17,287 adding 'nngt/geospatial/__init__.py' 2024-01-28T12:04:17,288 adding 'nngt/geospatial/countries.py' 2024-01-28T12:04:17,290 adding 'nngt/geospatial/plot.py' 2024-01-28T12:04:17,292 adding 'nngt/io/__init__.py' 2024-01-28T12:04:17,294 adding 'nngt/io/graph_loading.py' 2024-01-28T12:04:17,296 adding 'nngt/io/graph_saving.py' 2024-01-28T12:04:17,297 adding 'nngt/io/io_helpers.py' 2024-01-28T12:04:17,300 adding 'nngt/io/loading_helpers.py' 2024-01-28T12:04:17,301 adding 'nngt/io/saving_helpers.py' 2024-01-28T12:04:17,303 adding 'nngt/lib/__init__.py' 2024-01-28T12:04:17,304 adding 'nngt/lib/_frozendict.py' 2024-01-28T12:04:17,307 adding 'nngt/lib/connect_tools.py' 2024-01-28T12:04:17,308 adding 'nngt/lib/constants.py' 2024-01-28T12:04:17,309 adding 'nngt/lib/converters.py' 2024-01-28T12:04:17,310 adding 'nngt/lib/db_tools.py' 2024-01-28T12:04:17,313 adding 'nngt/lib/decorator.py' 2024-01-28T12:04:17,314 adding 'nngt/lib/errors.py' 2024-01-28T12:04:17,316 adding 'nngt/lib/graph_backends.py' 2024-01-28T12:04:17,318 adding 'nngt/lib/graph_helpers.py' 2024-01-28T12:04:17,319 adding 'nngt/lib/logger.py' 2024-01-28T12:04:17,322 adding 'nngt/lib/nngt_config.py' 2024-01-28T12:04:17,324 adding 'nngt/lib/rng_tools.py' 2024-01-28T12:04:17,325 adding 'nngt/lib/sorting.py' 2024-01-28T12:04:17,327 adding 'nngt/lib/test_functions.py' 2024-01-28T12:04:17,329 adding 'nngt/plot/__init__.py' 2024-01-28T12:04:17,333 adding 'nngt/plot/animations.py' 2024-01-28T12:04:17,334 adding 'nngt/plot/custom_plt.py' 2024-01-28T12:04:17,337 adding 'nngt/plot/hive_helpers.py' 2024-01-28T12:04:17,348 adding 'nngt/plot/plt_networks.py' 2024-01-28T12:04:17,353 adding 'nngt/plot/plt_properties.py' 2024-01-28T12:04:17,356 adding 'nngt/plot/chord_diag/README.md' 2024-01-28T12:04:17,357 adding 'nngt/plot/chord_diag/__init__.py' 2024-01-28T12:04:17,360 adding 'nngt/plot/chord_diag/chord_diagram.py' 2024-01-28T12:04:17,361 adding 'nngt/plot/chord_diag/example.py' 2024-01-28T12:04:17,362 adding 'nngt/plot/chord_diag/gradient.py' 2024-01-28T12:04:17,364 adding 'nngt/plot/chord_diag/utilities.py' 2024-01-28T12:04:17,366 adding 'nngt/simulation/__init__.py' 2024-01-28T12:04:17,369 adding 'nngt/simulation/nest_activity.py' 2024-01-28T12:04:17,371 adding 'nngt/simulation/nest_graph.py' 2024-01-28T12:04:17,375 adding 'nngt/simulation/nest_plot.py' 2024-01-28T12:04:17,378 adding 'nngt/simulation/nest_utils.py' 2024-01-28T12:04:17,379 adding 'NNGT-2.7.1.dist-info/BSD-2-Clause.txt' 2024-01-28T12:04:17,382 adding 'NNGT-2.7.1.dist-info/CC-BY-SA-4.0.txt' 2024-01-28T12:04:17,383 adding 'NNGT-2.7.1.dist-info/CC0-1.0.txt' 2024-01-28T12:04:17,389 adding 'NNGT-2.7.1.dist-info/GPL-3.0-or-later.txt' 2024-01-28T12:04:17,396 adding 'NNGT-2.7.1.dist-info/METADATA' 2024-01-28T12:04:17,398 adding 'NNGT-2.7.1.dist-info/Python-2.0.txt' 2024-01-28T12:04:17,399 adding 'NNGT-2.7.1.dist-info/WHEEL' 2024-01-28T12:04:17,400 adding 'NNGT-2.7.1.dist-info/top_level.txt' 2024-01-28T12:04:17,402 adding 'NNGT-2.7.1.dist-info/RECORD' 2024-01-28T12:04:17,431 removing build/bdist.linux-armv7l/wheel 2024-01-28T12:04:17,639 Building wheel for nngt (pyproject.toml): finished with status 'done' 2024-01-28T12:04:17,685 Created wheel for nngt: filename=NNGT-2.7.1-cp39-cp39-linux_armv7l.whl size=1551471 sha256=721a9b1ec1bb9f224365f51617857d0206c0ecd4e4aae068f839c18ab37f0160 2024-01-28T12:04:17,686 Stored in directory: /tmp/pip-ephem-wheel-cache-8sca2pn1/wheels/3b/e4/2e/a13b628d292929bc37fe2a0997b7989b6afd652221bac7f525 2024-01-28T12:04:17,707 Successfully built nngt 2024-01-28T12:04:17,753 Removed build tracker: '/tmp/pip-build-tracker-6fldnoo6'