2024-01-29T14:58:30,793 Created temporary directory: /tmp/pip-build-tracker-o7ybrdim 2024-01-29T14:58:30,794 Initialized build tracking at /tmp/pip-build-tracker-o7ybrdim 2024-01-29T14:58:30,795 Created build tracker: /tmp/pip-build-tracker-o7ybrdim 2024-01-29T14:58:30,795 Entered build tracker: /tmp/pip-build-tracker-o7ybrdim 2024-01-29T14:58:30,796 Created temporary directory: /tmp/pip-wheel-k4eyxaay 2024-01-29T14:58:30,799 Created temporary directory: /tmp/pip-ephem-wheel-cache-vfndnz8z 2024-01-29T14:58:30,824 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-29T14:58:30,827 2 location(s) to search for versions of bcbio-gff: 2024-01-29T14:58:30,827 * https://pypi.org/simple/bcbio-gff/ 2024-01-29T14:58:30,827 * https://www.piwheels.org/simple/bcbio-gff/ 2024-01-29T14:58:30,828 Fetching project page and analyzing links: https://pypi.org/simple/bcbio-gff/ 2024-01-29T14:58:30,829 Getting page https://pypi.org/simple/bcbio-gff/ 2024-01-29T14:58:30,830 Found index url https://pypi.org/simple/ 2024-01-29T14:58:31,048 Fetched page https://pypi.org/simple/bcbio-gff/ as application/vnd.pypi.simple.v1+json 2024-01-29T14:58:31,052 Found link https://files.pythonhosted.org/packages/0f/7b/508eb12b3d2ee89aed1da5daccfc6af4cc68774492ae744f3bf79fa1d394/bcbio-gff-0.2.tar.gz (from https://pypi.org/simple/bcbio-gff/), version: 0.2 2024-01-29T14:58:31,053 Found link https://files.pythonhosted.org/packages/b3/55/c5f2382bc610e4d5356a70e607db9c181e7c8d0d74b8bde4dd4ff7aaac0b/bcbio-gff-0.3.tar.gz (from https://pypi.org/simple/bcbio-gff/), version: 0.3 2024-01-29T14:58:31,054 Found link https://files.pythonhosted.org/packages/0f/25/58df1c623fbb9082e7cc76120cee5f34c679c93703d6e098b0587de5a983/bcbio-gff-0.4.tar.gz (from https://pypi.org/simple/bcbio-gff/), version: 0.4 2024-01-29T14:58:31,054 Found link https://files.pythonhosted.org/packages/05/a2/4d1bc8a54a930de08a9c80c5748f9cc2dde7a9c9608deb2c0e965794e5c9/bcbio-gff-0.5.tar.gz (from https://pypi.org/simple/bcbio-gff/), version: 0.5 2024-01-29T14:58:31,055 Found link https://files.pythonhosted.org/packages/e8/0d/b500bb14bb8c89cd38eebf2c6b63664f69b2e5decc5a66443b6b2d01110f/bcbio-gff-0.6.tar.gz (from https://pypi.org/simple/bcbio-gff/), version: 0.6 2024-01-29T14:58:31,056 Found link https://files.pythonhosted.org/packages/26/ff/e3f26bad87926bd397173ddafed4b0a6e30394ed7d1717879bdc19142ceb/bcbio-gff-0.6.1.tar.gz (from https://pypi.org/simple/bcbio-gff/), version: 0.6.1 2024-01-29T14:58:31,057 Found link https://files.pythonhosted.org/packages/d2/02/722db105394093e107c6d4aeb7b8526909a2580b984e9b4f90202e9db1ab/bcbio-gff-0.6.2.tar.gz (from https://pypi.org/simple/bcbio-gff/), version: 0.6.2 2024-01-29T14:58:31,058 Found link https://files.pythonhosted.org/packages/94/df/e2d75cc688ac6eb53f5fb4e2cffd240596bbcd5be28bab8d4f6404a6f86c/bcbio-gff-0.6.4.tar.gz (from https://pypi.org/simple/bcbio-gff/), version: 0.6.4 2024-01-29T14:58:31,058 Found link https://files.pythonhosted.org/packages/58/b3/4d2a1c146a9cdb2e5a0c80ae8a39cd1fc2daf4b990084f4cc1fe084d518d/bcbio-gff-0.6.5.tar.gz (from https://pypi.org/simple/bcbio-gff/), version: 0.6.5 2024-01-29T14:58:31,059 Found link https://files.pythonhosted.org/packages/ba/93/34156e0ed3eff9dbd52035f53a48b2ff7ae6bd877cda23ea9fce26cac9fc/bcbio-gff-0.6.6.tar.gz (from https://pypi.org/simple/bcbio-gff/), version: 0.6.6 2024-01-29T14:58:31,060 Found link https://files.pythonhosted.org/packages/36/ea/43b0b78123aa89b352c401339be0a560c46f3d11b42ad3156a927761037d/bcbio-gff-0.6.7.tar.gz (from https://pypi.org/simple/bcbio-gff/), version: 0.6.7 2024-01-29T14:58:31,061 Found link https://files.pythonhosted.org/packages/ff/84/7b5fd81fab0ce826c048bea363d2e27179031bbfb8c289e9924ecb639f96/bcbio-gff-0.6.8.tar.gz (from https://pypi.org/simple/bcbio-gff/), version: 0.6.8 2024-01-29T14:58:31,062 Found link https://files.pythonhosted.org/packages/cd/de/13a70a7a158fc9d61ea18b9dadd2ef07584c44a912708b6d29de0185fc1d/bcbio-gff-0.6.9.tar.gz (from https://pypi.org/simple/bcbio-gff/), version: 0.6.9 2024-01-29T14:58:31,062 Found link https://files.pythonhosted.org/packages/41/b0/e6a00273dd38694c585237d7644dc92bee69e8a023abde8658f9faf0b5b0/bcbio-gff-0.7.0.tar.gz (from https://pypi.org/simple/bcbio-gff/), version: 0.7.0 2024-01-29T14:58:31,063 Skipping link: No binaries permitted for bcbio-gff: https://files.pythonhosted.org/packages/65/ca/a662629e1b030af679d228aed5c813f0a8ceedec69f30885f1ec5571ea8a/bcbio_gff-0.7.0-py3-none-any.whl (from https://pypi.org/simple/bcbio-gff/) 2024-01-29T14:58:31,064 Found link https://files.pythonhosted.org/packages/20/03/769e86d61923c2febd229a9946bbfd0f5bc5ab09237481fb4c71e39d6966/bcbio-gff-0.7.1.tar.gz (from https://pypi.org/simple/bcbio-gff/), version: 0.7.1 2024-01-29T14:58:31,064 Skipping link: No binaries permitted for bcbio-gff: https://files.pythonhosted.org/packages/4d/fc/fb0ad7988b7db0bd88c2764fd6b82657786e61cd5ab7f051e823c1aa1d4a/bcbio_gff-0.7.1-py3-none-any.whl (from https://pypi.org/simple/bcbio-gff/) 2024-01-29T14:58:31,065 Fetching project page and analyzing links: https://www.piwheels.org/simple/bcbio-gff/ 2024-01-29T14:58:31,066 Getting page https://www.piwheels.org/simple/bcbio-gff/ 2024-01-29T14:58:31,067 Found index url https://www.piwheels.org/simple/ 2024-01-29T14:58:31,231 Fetched page https://www.piwheels.org/simple/bcbio-gff/ as text/html 2024-01-29T14:58:31,236 Skipping link: No binaries permitted for bcbio-gff: https://www.piwheels.org/simple/bcbio-gff/bcbio_gff-0.7.0-py3-none-any.whl#sha256=cd4b2591d4c2aa1eabff8d2c9285bf51a104beb162e60cbfad991f4d79caf5f4 (from https://www.piwheels.org/simple/bcbio-gff/) 2024-01-29T14:58:31,236 Skipping link: No binaries permitted for bcbio-gff: https://www.piwheels.org/simple/bcbio-gff/bcbio_gff-0.6.9-py3-none-any.whl#sha256=28d283f764df2bcd245795f560b0b5911c398e41c706d5d1c6160e7fb5a693a4 (from https://www.piwheels.org/simple/bcbio-gff/) 2024-01-29T14:58:31,237 Skipping link: No binaries permitted for bcbio-gff: https://www.piwheels.org/simple/bcbio-gff/bcbio_gff-0.6.8-py3-none-any.whl#sha256=60d3a3f0c0ef57d14de440969f381d9b279a3b6f40474e78bb807c1b3e0da6e2 (from https://www.piwheels.org/simple/bcbio-gff/) 2024-01-29T14:58:31,237 Skipping link: No binaries permitted for bcbio-gff: https://www.piwheels.org/simple/bcbio-gff/bcbio_gff-0.6.7-py3-none-any.whl#sha256=3bf61b615bc27683f6e822fe2d56b9fb6785b2704fc416081ecd7e5eb36f4e62 (from https://www.piwheels.org/simple/bcbio-gff/) 2024-01-29T14:58:31,238 Skipping link: No binaries permitted for bcbio-gff: https://www.piwheels.org/simple/bcbio-gff/bcbio_gff-0.6.6-py3-none-any.whl#sha256=fed4e11dc189716661bd3953c6830f5c5688d008270ddc799b1af74d5410f954 (from https://www.piwheels.org/simple/bcbio-gff/) 2024-01-29T14:58:31,238 Skipping link: No binaries permitted for bcbio-gff: https://www.piwheels.org/simple/bcbio-gff/bcbio_gff-0.6.5-py3-none-any.whl#sha256=f3e2b0fb48ae692b5036735749852c53875b4abe9855824ccf5e86c7857f355b (from https://www.piwheels.org/simple/bcbio-gff/) 2024-01-29T14:58:31,239 Skipping link: No binaries permitted for bcbio-gff: https://www.piwheels.org/simple/bcbio-gff/bcbio_gff-0.6.4-py3-none-any.whl#sha256=f7fff5ea6cacce98b07767e8781979d74c0621d9cbdbca8254cad00a8c72071f (from https://www.piwheels.org/simple/bcbio-gff/) 2024-01-29T14:58:31,239 Skipping link: No binaries permitted for bcbio-gff: https://www.piwheels.org/simple/bcbio-gff/bcbio_gff-0.6.2-py3-none-any.whl#sha256=b3d402fa8f0151e47bcae8302ef07ce311fb1c1dc62ae8016f295624984edc63 (from https://www.piwheels.org/simple/bcbio-gff/) 2024-01-29T14:58:31,240 Skipping link: No binaries permitted for bcbio-gff: https://www.piwheels.org/simple/bcbio-gff/bcbio_gff-0.6.1-py3-none-any.whl#sha256=8cd45e5fbbf3bff14daa227b3a1fe86ebd1c5f7ff7542400ac9c426b01b145f4 (from https://www.piwheels.org/simple/bcbio-gff/) 2024-01-29T14:58:31,241 Skipping link: No binaries permitted for bcbio-gff: https://www.piwheels.org/simple/bcbio-gff/bcbio_gff-0.6-py3-none-any.whl#sha256=9042a9615f9acc2dba5010f43bc8ea8913db3525bd597feaf5f36a50ee1a62b3 (from https://www.piwheels.org/simple/bcbio-gff/) 2024-01-29T14:58:31,241 Skipping link: No binaries permitted for bcbio-gff: https://www.piwheels.org/simple/bcbio-gff/bcbio_gff-0.5-py3-none-any.whl#sha256=f19c6bf7223ccfdba69a5b19bd352224a14ba56f088c026bd210e0911f245a39 (from https://www.piwheels.org/simple/bcbio-gff/) 2024-01-29T14:58:31,242 Skipping link: No binaries permitted for bcbio-gff: https://www.piwheels.org/simple/bcbio-gff/bcbio_gff-0.4-py3-none-any.whl#sha256=774c81b9acbf242e42b1dd809f154efeb177930fa5458785c68eee1dca065018 (from https://www.piwheels.org/simple/bcbio-gff/) 2024-01-29T14:58:31,242 Skipping link: No binaries permitted for bcbio-gff: https://www.piwheels.org/simple/bcbio-gff/bcbio_gff-0.3-py3-none-any.whl#sha256=9beae40dd3eaf73b8691c6235b718792fa4292e499ea80797fec58075af0a889 (from https://www.piwheels.org/simple/bcbio-gff/) 2024-01-29T14:58:31,243 Skipping link: No binaries permitted for bcbio-gff: https://www.piwheels.org/simple/bcbio-gff/bcbio_gff-0.2-py3-none-any.whl#sha256=bce47eae598edb3d56a44b017370befb7b1234b1491b88f04087fb146d642e83 (from https://www.piwheels.org/simple/bcbio-gff/) 2024-01-29T14:58:31,244 Skipping link: not a file: https://www.piwheels.org/simple/bcbio-gff/ 2024-01-29T14:58:31,244 Skipping link: not a file: https://pypi.org/simple/bcbio-gff/ 2024-01-29T14:58:31,264 Given no hashes to check 1 links for project 'bcbio-gff': discarding no candidates 2024-01-29T14:58:31,282 Collecting bcbio-gff==0.7.1 2024-01-29T14:58:31,284 Created temporary directory: /tmp/pip-unpack-8iauz34w 2024-01-29T14:58:31,509 Downloading bcbio-gff-0.7.1.tar.gz (20 kB) 2024-01-29T14:58:31,553 Added bcbio-gff==0.7.1 from https://files.pythonhosted.org/packages/20/03/769e86d61923c2febd229a9946bbfd0f5bc5ab09237481fb4c71e39d6966/bcbio-gff-0.7.1.tar.gz to build tracker '/tmp/pip-build-tracker-o7ybrdim' 2024-01-29T14:58:31,554 Running setup.py (path:/tmp/pip-wheel-k4eyxaay/bcbio-gff_679c54f6ee6b4640bb5cb504730eb7c0/setup.py) egg_info for package bcbio-gff 2024-01-29T14:58:31,555 Created temporary directory: /tmp/pip-pip-egg-info-7w2raayo 2024-01-29T14:58:31,556 Preparing metadata (setup.py): started 2024-01-29T14:58:31,557 Running command python setup.py egg_info 2024-01-29T14:58:32,593 running egg_info 2024-01-29T14:58:32,595 creating /tmp/pip-pip-egg-info-7w2raayo/bcbio_gff.egg-info 2024-01-29T14:58:32,619 writing /tmp/pip-pip-egg-info-7w2raayo/bcbio_gff.egg-info/PKG-INFO 2024-01-29T14:58:32,621 writing dependency_links to /tmp/pip-pip-egg-info-7w2raayo/bcbio_gff.egg-info/dependency_links.txt 2024-01-29T14:58:32,623 writing requirements to /tmp/pip-pip-egg-info-7w2raayo/bcbio_gff.egg-info/requires.txt 2024-01-29T14:58:32,624 writing top-level names to /tmp/pip-pip-egg-info-7w2raayo/bcbio_gff.egg-info/top_level.txt 2024-01-29T14:58:32,626 writing manifest file '/tmp/pip-pip-egg-info-7w2raayo/bcbio_gff.egg-info/SOURCES.txt' 2024-01-29T14:58:32,701 reading manifest file '/tmp/pip-pip-egg-info-7w2raayo/bcbio_gff.egg-info/SOURCES.txt' 2024-01-29T14:58:32,702 reading manifest template 'MANIFEST.in' 2024-01-29T14:58:32,707 adding license file 'LICENSE' 2024-01-29T14:58:32,709 writing manifest file '/tmp/pip-pip-egg-info-7w2raayo/bcbio_gff.egg-info/SOURCES.txt' 2024-01-29T14:58:32,819 Preparing metadata (setup.py): finished with status 'done' 2024-01-29T14:58:32,823 Source in /tmp/pip-wheel-k4eyxaay/bcbio-gff_679c54f6ee6b4640bb5cb504730eb7c0 has version 0.7.1, which satisfies requirement bcbio-gff==0.7.1 from https://files.pythonhosted.org/packages/20/03/769e86d61923c2febd229a9946bbfd0f5bc5ab09237481fb4c71e39d6966/bcbio-gff-0.7.1.tar.gz 2024-01-29T14:58:32,824 Removed bcbio-gff==0.7.1 from https://files.pythonhosted.org/packages/20/03/769e86d61923c2febd229a9946bbfd0f5bc5ab09237481fb4c71e39d6966/bcbio-gff-0.7.1.tar.gz from build tracker '/tmp/pip-build-tracker-o7ybrdim' 2024-01-29T14:58:32,828 Created temporary directory: /tmp/pip-unpack-9vbooc6_ 2024-01-29T14:58:32,829 Created temporary directory: /tmp/pip-unpack-z_if8rgj 2024-01-29T14:58:32,833 Building wheels for collected packages: bcbio-gff 2024-01-29T14:58:32,837 Created temporary directory: /tmp/pip-wheel-_liehf2l 2024-01-29T14:58:32,838 Building wheel for bcbio-gff (setup.py): started 2024-01-29T14:58:32,839 Destination directory: /tmp/pip-wheel-_liehf2l 2024-01-29T14:58:32,840 Running command python setup.py bdist_wheel 2024-01-29T14:58:33,850 running bdist_wheel 2024-01-29T14:58:33,943 running build 2024-01-29T14:58:33,943 running build_py 2024-01-29T14:58:33,969 creating build 2024-01-29T14:58:33,969 creating build/lib 2024-01-29T14:58:33,970 creating build/lib/BCBio 2024-01-29T14:58:33,971 copying BCBio/__init__.py -> build/lib/BCBio 2024-01-29T14:58:33,973 creating build/lib/BCBio/GFF 2024-01-29T14:58:33,974 copying BCBio/GFF/GFFParser.py -> build/lib/BCBio/GFF 2024-01-29T14:58:33,977 copying BCBio/GFF/_utils.py -> build/lib/BCBio/GFF 2024-01-29T14:58:33,978 copying BCBio/GFF/GFFOutput.py -> build/lib/BCBio/GFF 2024-01-29T14:58:33,980 copying BCBio/GFF/__init__.py -> build/lib/BCBio/GFF 2024-01-29T14:58:34,008 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-01-29T14:58:34,008 !! 2024-01-29T14:58:34,009 ******************************************************************************** 2024-01-29T14:58:34,010 Please avoid running ``setup.py`` directly. 2024-01-29T14:58:34,010 Instead, use pypa/build, pypa/installer or other 2024-01-29T14:58:34,011 standards-based tools. 2024-01-29T14:58:34,011 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-01-29T14:58:34,012 ******************************************************************************** 2024-01-29T14:58:34,013 !! 2024-01-29T14:58:34,013 self.initialize_options() 2024-01-29T14:58:34,031 installing to build/bdist.linux-armv7l/wheel 2024-01-29T14:58:34,032 running install 2024-01-29T14:58:34,056 running install_lib 2024-01-29T14:58:34,080 creating build/bdist.linux-armv7l 2024-01-29T14:58:34,080 creating build/bdist.linux-armv7l/wheel 2024-01-29T14:58:34,082 creating build/bdist.linux-armv7l/wheel/BCBio 2024-01-29T14:58:34,083 creating build/bdist.linux-armv7l/wheel/BCBio/GFF 2024-01-29T14:58:34,084 copying build/lib/BCBio/GFF/GFFParser.py -> build/bdist.linux-armv7l/wheel/BCBio/GFF 2024-01-29T14:58:34,087 copying build/lib/BCBio/GFF/_utils.py -> build/bdist.linux-armv7l/wheel/BCBio/GFF 2024-01-29T14:58:34,089 copying build/lib/BCBio/GFF/GFFOutput.py -> build/bdist.linux-armv7l/wheel/BCBio/GFF 2024-01-29T14:58:34,091 copying build/lib/BCBio/GFF/__init__.py -> build/bdist.linux-armv7l/wheel/BCBio/GFF 2024-01-29T14:58:34,093 copying build/lib/BCBio/__init__.py -> build/bdist.linux-armv7l/wheel/BCBio 2024-01-29T14:58:34,094 running install_egg_info 2024-01-29T14:58:34,157 running egg_info 2024-01-29T14:58:34,180 writing bcbio_gff.egg-info/PKG-INFO 2024-01-29T14:58:34,183 writing dependency_links to bcbio_gff.egg-info/dependency_links.txt 2024-01-29T14:58:34,184 writing requirements to bcbio_gff.egg-info/requires.txt 2024-01-29T14:58:34,185 writing top-level names to bcbio_gff.egg-info/top_level.txt 2024-01-29T14:58:34,212 reading manifest file 'bcbio_gff.egg-info/SOURCES.txt' 2024-01-29T14:58:34,214 reading manifest template 'MANIFEST.in' 2024-01-29T14:58:34,218 adding license file 'LICENSE' 2024-01-29T14:58:34,220 writing manifest file 'bcbio_gff.egg-info/SOURCES.txt' 2024-01-29T14:58:34,221 Copying bcbio_gff.egg-info to build/bdist.linux-armv7l/wheel/bcbio_gff-0.7.1-py3.11.egg-info 2024-01-29T14:58:34,230 running install_scripts 2024-01-29T14:58:34,242 creating build/bdist.linux-armv7l/wheel/bcbio_gff-0.7.1.dist-info/WHEEL 2024-01-29T14:58:34,244 creating '/tmp/pip-wheel-_liehf2l/bcbio_gff-0.7.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-01-29T14:58:34,246 adding 'BCBio/__init__.py' 2024-01-29T14:58:34,249 adding 'BCBio/GFF/GFFOutput.py' 2024-01-29T14:58:34,254 adding 'BCBio/GFF/GFFParser.py' 2024-01-29T14:58:34,256 adding 'BCBio/GFF/__init__.py' 2024-01-29T14:58:34,257 adding 'BCBio/GFF/_utils.py' 2024-01-29T14:58:34,259 adding 'bcbio_gff-0.7.1.dist-info/LICENSE' 2024-01-29T14:58:34,260 adding 'bcbio_gff-0.7.1.dist-info/METADATA' 2024-01-29T14:58:34,261 adding 'bcbio_gff-0.7.1.dist-info/WHEEL' 2024-01-29T14:58:34,262 adding 'bcbio_gff-0.7.1.dist-info/top_level.txt' 2024-01-29T14:58:34,263 adding 'bcbio_gff-0.7.1.dist-info/RECORD' 2024-01-29T14:58:34,264 removing build/bdist.linux-armv7l/wheel 2024-01-29T14:58:34,379 Building wheel for bcbio-gff (setup.py): finished with status 'done' 2024-01-29T14:58:34,382 Created wheel for bcbio-gff: filename=bcbio_gff-0.7.1-py3-none-any.whl size=16007 sha256=ef93b8fde538565a14470a0452bcb0fb0df943d3d9c7719865731c1f99c74c43 2024-01-29T14:58:34,383 Stored in directory: /tmp/pip-ephem-wheel-cache-vfndnz8z/wheels/ab/fc/b5/1aff225e9cbc0b2c2ca7912c3cbc7ea76acfdbedf1da45af86 2024-01-29T14:58:34,391 Successfully built bcbio-gff 2024-01-29T14:58:34,395 Removed build tracker: '/tmp/pip-build-tracker-o7ybrdim'