2024-01-29T22:28:37,624 Created temporary directory: /tmp/pip-build-tracker-jxeaqpip 2024-01-29T22:28:37,626 Initialized build tracking at /tmp/pip-build-tracker-jxeaqpip 2024-01-29T22:28:37,626 Created build tracker: /tmp/pip-build-tracker-jxeaqpip 2024-01-29T22:28:37,627 Entered build tracker: /tmp/pip-build-tracker-jxeaqpip 2024-01-29T22:28:37,628 Created temporary directory: /tmp/pip-wheel-5aqqouzr 2024-01-29T22:28:37,631 Created temporary directory: /tmp/pip-ephem-wheel-cache-zsxvn27j 2024-01-29T22:28:37,653 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-29T22:28:37,657 2 location(s) to search for versions of nmdc-runtime: 2024-01-29T22:28:37,657 * https://pypi.org/simple/nmdc-runtime/ 2024-01-29T22:28:37,657 * https://www.piwheels.org/simple/nmdc-runtime/ 2024-01-29T22:28:37,657 Fetching project page and analyzing links: https://pypi.org/simple/nmdc-runtime/ 2024-01-29T22:28:37,658 Getting page https://pypi.org/simple/nmdc-runtime/ 2024-01-29T22:28:37,660 Found index url https://pypi.org/simple/ 2024-01-29T22:28:37,901 Fetched page https://pypi.org/simple/nmdc-runtime/ as application/vnd.pypi.simple.v1+json 2024-01-29T22:28:37,908 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ba/44/acaca01a3fdf26351a427b58ca793a2702c1157d5125d3101029e99d0ab0/nmdc_runtime-0.1.0-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2024-01-29T22:28:37,909 Found link https://files.pythonhosted.org/packages/3d/56/9ddca8b74ed798352aca6ba02e98c7bfbf232ccb237660b2488f7da8a39e/nmdc_runtime-0.1.0.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.0 2024-01-29T22:28:37,910 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/38/59/cb99a0e180d0de57a68cdd118ed305b68d97561a7a82da80d48992236382/nmdc_runtime-0.1.1-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2024-01-29T22:28:37,911 Found link https://files.pythonhosted.org/packages/31/0d/353b462ef1bde0cdb4f4d36b943b19f4844070641e2ad25cf4b39e10154d/nmdc_runtime-0.1.1.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.1 2024-01-29T22:28:37,912 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/c9/32/65aa3b8e7dae9e5c896fa1fcaf559fb1784d824759c78b4c89682c681275/nmdc_runtime-0.1.3-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2024-01-29T22:28:37,913 Found link https://files.pythonhosted.org/packages/f5/f9/e540bd39ae5b2f834f09138219ba5c9beab7797821f063b93e2f0cb48c30/nmdc_runtime-0.1.3.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.3 2024-01-29T22:28:37,913 Skipping link: No binaries permitted for nmdc-runtime: 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https://files.pythonhosted.org/packages/a6/d4/a045432ad1e5aa78fe551f709acefb99c2daa2900a79764b6e4b24a3ff84/nmdc_runtime-1.0.5.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.5 2024-01-29T22:28:37,920 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ba/50/3d96523a550ade0100a5119d6db39d4d50c53c0ce641d1122b28065ddd59/nmdc_runtime-1.0.6-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-01-29T22:28:37,921 Found link https://files.pythonhosted.org/packages/1b/14/332338c0e11e12cfc9cef95954d336975121bf9bf6bc5c9208dca1b078da/nmdc_runtime-1.0.6.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.6 2024-01-29T22:28:37,921 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/83/aa/294ca7f53b217ca8dd0788b77d08fb5c3688780e44bc3d111c06540ef05f/nmdc_runtime-1.0.7-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-01-29T22:28:37,922 Found link https://files.pythonhosted.org/packages/b5/d2/a8d599d0fd9c6a8e0e50d4e564acb5e8e3e956832e410c76a46d76f86ccb/nmdc_runtime-1.0.7.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.7 2024-01-29T22:28:37,923 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/de/d5/c7c62f5f39ec86d5ac6a716db4ca2e462bd295c9c0cd4bad4b3e01ccab17/nmdc_runtime-1.0.8-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-01-29T22:28:37,924 Found link https://files.pythonhosted.org/packages/d5/81/4f13b4623de2904fc48c01a4d2e58a09f274a65db23ee0038a0ff56bb08a/nmdc_runtime-1.0.8.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.8 2024-01-29T22:28:37,924 Skipping link: No binaries permitted for nmdc-runtime: 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version: 1.0.10 2024-01-29T22:28:37,927 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/53/77/c73fdac212bf196c2e3dfbf8347d160b427dff8f11e069c1a5972ce90c43/nmdc_runtime-1.0.11-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-01-29T22:28:37,928 Found link https://files.pythonhosted.org/packages/67/81/5b6010837872165ff671121bfff01d29e103997d7b394eae5453f4bdd1b9/nmdc_runtime-1.0.11.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.11 2024-01-29T22:28:37,929 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/13/bd/6dd46143615928b35bc35b6f246fff3cb4c55d35a8555d47f7cd7565a605/nmdc_runtime-1.0.12-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-01-29T22:28:37,930 Found link https://files.pythonhosted.org/packages/73/08/56746d739798869d3ed33ac1e8685a044effc638e5f60e0989334e3df803/nmdc_runtime-1.0.12.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.12 2024-01-29T22:28:37,931 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/7c/80/a8c1f0d64d6a38faa36be239477f893488fa2e80bbd9d3699996544fd35a/nmdc_runtime-1.0.13-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-01-29T22:28:37,932 Found link https://files.pythonhosted.org/packages/dd/eb/a7a49613cffd4d9835cacbb61b9b8b682346b7f7257b025e6faa922f3106/nmdc_runtime-1.0.13.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.13 2024-01-29T22:28:37,932 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/17/8d/0c38aaa9d5581eda908809321eb9218b90b859c2087483513edfe30e0ae9/nmdc_runtime-1.0.14-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-01-29T22:28:37,933 Found link https://files.pythonhosted.org/packages/aa/6b/6e5ecdb95c3060c389779c16813ebbd437c61519d0c923bec953b80f8b6e/nmdc_runtime-1.0.14.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.14 2024-01-29T22:28:37,933 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/24/60/40b5389c4d34db0aefc25a4f407a1965d297a51ce443ffcc54fcf5f0a30f/nmdc_runtime-1.1.0-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-01-29T22:28:37,934 Found link https://files.pythonhosted.org/packages/f1/af/d3edeb153597d1918967ef00cf6be6621c21043ba1549fa0f37273a01a7d/nmdc_runtime-1.1.0.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.1.0 2024-01-29T22:28:37,935 Skipping link: No binaries permitted for nmdc-runtime: 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version: 1.3.0 2024-01-29T22:28:37,938 Fetching project page and analyzing links: https://www.piwheels.org/simple/nmdc-runtime/ 2024-01-29T22:28:37,939 Getting page https://www.piwheels.org/simple/nmdc-runtime/ 2024-01-29T22:28:37,940 Found index url https://www.piwheels.org/simple/ 2024-01-29T22:28:38,099 Fetched page https://www.piwheels.org/simple/nmdc-runtime/ as text/html 2024-01-29T22:28:38,105 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.2.0-py3-none-any.whl#sha256=21a501b7fa193fe956a1a992fdcd4388ae80f57fa6354e14e2855edde761c39d (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-01-29T22:28:38,106 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.1.0-py3-none-any.whl#sha256=d53b1a410a95e2e14bfd7a88dd3ea3163a079acd47eb8f2b197e6aef02689ac3 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-01-29T22:28:38,107 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.14-py3-none-any.whl#sha256=7ea5bd4e9b9348aee578b0f6c64bdc35467a36da334a44d91c50fa1417405f13 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-01-29T22:28:38,108 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.13-py3-none-any.whl#sha256=31d876ee80407dc4049b210ed8c017b77723f7ad78bf89ea9ef8b07f1ea8682a (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-01-29T22:28:38,108 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.12-py3-none-any.whl#sha256=87d81eb829ad73563e0fa371336f03d59417e00c9dcc12d943738fa67c0287fc (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-01-29T22:28:38,108 Skipping link: No binaries permitted for 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https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.5-py3-none-any.whl#sha256=56e0d62bd48bfa043e59ef94e033c8f09581b0449928cc4ac9ec1f6052ff0a39 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-01-29T22:28:38,112 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.4-py3-none-any.whl#sha256=5e175512550dc24c2d30b9075bb2914cafdb2c653aa60975cde6c63a2829d542 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-01-29T22:28:38,113 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.6-py3-none-any.whl#sha256=5a8149e8f3e41c8fd242361d7a5918eb005bfd8e8c5639321d4ecbfe917a1292 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2024-01-29T22:28:38,113 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.3-py3-none-any.whl#sha256=67c7cf263830bd4c4c62dff28d0073f938ecb1055f487f43a15f935ef54e461d (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2024-01-29T22:28:38,114 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.1-py3-none-any.whl#sha256=f960697437ecf9bf8309e94fbb729ae1440468a7de29b264a61fb6de39368762 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2024-01-29T22:28:38,114 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.0-py3-none-any.whl#sha256=7a67f7282667a4265a04bf134156531046957b197da284d9550cf19e96541943 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2024-01-29T22:28:38,115 Skipping link: not a file: https://www.piwheels.org/simple/nmdc-runtime/ 2024-01-29T22:28:38,116 Skipping link: not a file: https://pypi.org/simple/nmdc-runtime/ 2024-01-29T22:28:38,137 Given no hashes to check 1 links for project 'nmdc-runtime': discarding no candidates 2024-01-29T22:28:38,157 Collecting nmdc-runtime==1.3.0 2024-01-29T22:28:38,159 Created temporary directory: /tmp/pip-unpack-1pb1974d 2024-01-29T22:28:38,641 Downloading nmdc_runtime-1.3.0.tar.gz (63.7 MB) 2024-01-29T22:28:53,077 Added nmdc-runtime==1.3.0 from https://files.pythonhosted.org/packages/fc/5b/4468b0402403aeecb9bf10b5381dd759e1b8ca11a5793c7c1f7e600f8068/nmdc_runtime-1.3.0.tar.gz to build tracker '/tmp/pip-build-tracker-jxeaqpip' 2024-01-29T22:28:53,080 Running setup.py (path:/tmp/pip-wheel-5aqqouzr/nmdc-runtime_0bb6a0b209064aae83fb27b2c8fa405e/setup.py) egg_info for package nmdc-runtime 2024-01-29T22:28:53,081 Created temporary directory: /tmp/pip-pip-egg-info-hqz8r9z3 2024-01-29T22:28:53,081 Preparing metadata (setup.py): started 2024-01-29T22:28:53,083 Running command python setup.py egg_info 2024-01-29T22:28:53,811 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2024-01-29T22:28:53,812 !! 2024-01-29T22:28:53,813 ******************************************************************************** 2024-01-29T22:28:53,814 Requirements should be satisfied by a PEP 517 installer. 2024-01-29T22:28:53,814 If you are using pip, you can try `pip install --use-pep517`. 2024-01-29T22:28:53,815 ******************************************************************************** 2024-01-29T22:28:53,816 !! 2024-01-29T22:28:53,817 dist.fetch_build_eggs(dist.setup_requires) 2024-01-29T22:28:56,896 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2024-01-29T22:28:56,997 running egg_info 2024-01-29T22:28:56,998 creating /tmp/pip-pip-egg-info-hqz8r9z3/nmdc_runtime.egg-info 2024-01-29T22:28:57,026 writing /tmp/pip-pip-egg-info-hqz8r9z3/nmdc_runtime.egg-info/PKG-INFO 2024-01-29T22:28:57,029 writing dependency_links to /tmp/pip-pip-egg-info-hqz8r9z3/nmdc_runtime.egg-info/dependency_links.txt 2024-01-29T22:28:57,031 writing entry points to /tmp/pip-pip-egg-info-hqz8r9z3/nmdc_runtime.egg-info/entry_points.txt 2024-01-29T22:28:57,032 writing top-level names to /tmp/pip-pip-egg-info-hqz8r9z3/nmdc_runtime.egg-info/top_level.txt 2024-01-29T22:28:57,034 writing manifest file '/tmp/pip-pip-egg-info-hqz8r9z3/nmdc_runtime.egg-info/SOURCES.txt' 2024-01-29T22:28:57,224 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-01-29T22:28:57,230 reading manifest file '/tmp/pip-pip-egg-info-hqz8r9z3/nmdc_runtime.egg-info/SOURCES.txt' 2024-01-29T22:28:57,232 adding license file 'LICENSE' 2024-01-29T22:28:57,235 writing manifest file '/tmp/pip-pip-egg-info-hqz8r9z3/nmdc_runtime.egg-info/SOURCES.txt' 2024-01-29T22:28:57,353 Preparing metadata (setup.py): finished with status 'done' 2024-01-29T22:28:57,356 Source in /tmp/pip-wheel-5aqqouzr/nmdc-runtime_0bb6a0b209064aae83fb27b2c8fa405e has version 1.3.0, which satisfies requirement nmdc-runtime==1.3.0 from https://files.pythonhosted.org/packages/fc/5b/4468b0402403aeecb9bf10b5381dd759e1b8ca11a5793c7c1f7e600f8068/nmdc_runtime-1.3.0.tar.gz 2024-01-29T22:28:57,357 Removed nmdc-runtime==1.3.0 from https://files.pythonhosted.org/packages/fc/5b/4468b0402403aeecb9bf10b5381dd759e1b8ca11a5793c7c1f7e600f8068/nmdc_runtime-1.3.0.tar.gz from build tracker '/tmp/pip-build-tracker-jxeaqpip' 2024-01-29T22:28:57,363 Created temporary directory: /tmp/pip-unpack-rl_tgs7n 2024-01-29T22:28:57,364 Created temporary directory: /tmp/pip-unpack-h8mn0lb2 2024-01-29T22:28:57,367 Building wheels for collected packages: nmdc-runtime 2024-01-29T22:28:57,371 Created temporary directory: /tmp/pip-wheel-zu3m98e3 2024-01-29T22:28:57,372 Building wheel for nmdc-runtime (setup.py): started 2024-01-29T22:28:57,373 Destination directory: /tmp/pip-wheel-zu3m98e3 2024-01-29T22:28:57,373 Running command python setup.py bdist_wheel 2024-01-29T22:28:58,057 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2024-01-29T22:28:58,057 !! 2024-01-29T22:28:58,058 ******************************************************************************** 2024-01-29T22:28:58,059 Requirements should be satisfied by a PEP 517 installer. 2024-01-29T22:28:58,059 If you are using pip, you can try `pip install --use-pep517`. 2024-01-29T22:28:58,060 ******************************************************************************** 2024-01-29T22:28:58,061 !! 2024-01-29T22:28:58,061 dist.fetch_build_eggs(dist.setup_requires) 2024-01-29T22:28:58,608 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2024-01-29T22:28:58,702 running bdist_wheel 2024-01-29T22:28:58,837 running build 2024-01-29T22:28:58,838 running build_py 2024-01-29T22:28:58,868 creating build 2024-01-29T22:28:58,868 creating build/lib 2024-01-29T22:28:58,869 creating build/lib/nmdc_runtime 2024-01-29T22:28:58,870 copying nmdc_runtime/util.py -> build/lib/nmdc_runtime 2024-01-29T22:28:58,873 copying nmdc_runtime/__init__.py -> build/lib/nmdc_runtime 2024-01-29T22:28:58,874 copying nmdc_runtime/containers.py -> build/lib/nmdc_runtime 2024-01-29T22:28:58,876 copying nmdc_runtime/main.py -> build/lib/nmdc_runtime 2024-01-29T22:28:58,878 creating build/lib/nmdc_runtime/core 2024-01-29T22:28:58,879 copying nmdc_runtime/core/__init__.py -> build/lib/nmdc_runtime/core 2024-01-29T22:28:58,881 creating build/lib/nmdc_runtime/domain 2024-01-29T22:28:58,881 copying nmdc_runtime/domain/__init__.py -> build/lib/nmdc_runtime/domain 2024-01-29T22:28:58,883 creating build/lib/nmdc_runtime/minter 2024-01-29T22:28:58,884 copying nmdc_runtime/minter/__init__.py -> build/lib/nmdc_runtime/minter 2024-01-29T22:28:58,886 copying nmdc_runtime/minter/config.py -> build/lib/nmdc_runtime/minter 2024-01-29T22:28:58,887 copying nmdc_runtime/minter/bootstrap.py -> build/lib/nmdc_runtime/minter 2024-01-29T22:28:58,890 creating build/lib/nmdc_runtime/lib 2024-01-29T22:28:58,891 copying nmdc_runtime/lib/__init__.py -> build/lib/nmdc_runtime/lib 2024-01-29T22:28:58,892 copying nmdc_runtime/lib/nmdc_dataframes.py -> build/lib/nmdc_runtime/lib 2024-01-29T22:28:58,895 copying nmdc_runtime/lib/load_nmdc_data.py -> build/lib/nmdc_runtime/lib 2024-01-29T22:28:58,897 copying nmdc_runtime/lib/extract_nmdc_data.py -> build/lib/nmdc_runtime/lib 2024-01-29T22:28:58,898 copying nmdc_runtime/lib/nmdc_etl_class.py -> build/lib/nmdc_runtime/lib 2024-01-29T22:28:58,901 copying nmdc_runtime/lib/transform_nmdc_data.py -> build/lib/nmdc_runtime/lib 2024-01-29T22:28:58,904 creating build/lib/nmdc_runtime/site 2024-01-29T22:28:58,905 copying nmdc_runtime/site/util.py -> build/lib/nmdc_runtime/site 2024-01-29T22:28:58,907 copying nmdc_runtime/site/__init__.py -> build/lib/nmdc_runtime/site 2024-01-29T22:28:58,908 copying nmdc_runtime/site/resources.py -> build/lib/nmdc_runtime/site 2024-01-29T22:28:58,910 copying nmdc_runtime/site/graphs.py -> build/lib/nmdc_runtime/site 2024-01-29T22:28:58,912 copying nmdc_runtime/site/ops.py -> build/lib/nmdc_runtime/site 2024-01-29T22:28:58,915 copying nmdc_runtime/site/repository.py -> build/lib/nmdc_runtime/site 2024-01-29T22:28:58,917 creating build/lib/nmdc_runtime/client 2024-01-29T22:28:58,918 copying nmdc_runtime/client/__init__.py -> build/lib/nmdc_runtime/client 2024-01-29T22:28:58,920 creating build/lib/nmdc_runtime/infrastructure 2024-01-29T22:28:58,921 copying nmdc_runtime/infrastructure/__init__.py -> build/lib/nmdc_runtime/infrastructure 2024-01-29T22:28:58,923 creating build/lib/nmdc_runtime/core/db 2024-01-29T22:28:58,923 copying nmdc_runtime/core/db/__init__.py -> build/lib/nmdc_runtime/core/db 2024-01-29T22:28:58,925 copying nmdc_runtime/core/db/Database.py -> build/lib/nmdc_runtime/core/db 2024-01-29T22:28:58,927 creating build/lib/nmdc_runtime/core/exceptions 2024-01-29T22:28:58,928 copying nmdc_runtime/core/exceptions/__init__.py -> build/lib/nmdc_runtime/core/exceptions 2024-01-29T22:28:58,929 copying nmdc_runtime/core/exceptions/token.py -> build/lib/nmdc_runtime/core/exceptions 2024-01-29T22:28:58,931 copying nmdc_runtime/core/exceptions/base.py -> build/lib/nmdc_runtime/core/exceptions 2024-01-29T22:28:58,933 creating build/lib/nmdc_runtime/domain/users 2024-01-29T22:28:58,934 copying nmdc_runtime/domain/users/__init__.py -> build/lib/nmdc_runtime/domain/users 2024-01-29T22:28:58,935 copying nmdc_runtime/domain/users/userService.py -> build/lib/nmdc_runtime/domain/users 2024-01-29T22:28:58,937 copying nmdc_runtime/domain/users/queriesInterface.py -> build/lib/nmdc_runtime/domain/users 2024-01-29T22:28:58,938 copying nmdc_runtime/domain/users/userSchema.py -> build/lib/nmdc_runtime/domain/users 2024-01-29T22:28:58,941 creating build/lib/nmdc_runtime/minter/adapters 2024-01-29T22:28:58,942 copying nmdc_runtime/minter/adapters/__init__.py -> build/lib/nmdc_runtime/minter/adapters 2024-01-29T22:28:58,943 copying nmdc_runtime/minter/adapters/repository.py -> build/lib/nmdc_runtime/minter/adapters 2024-01-29T22:28:58,946 creating build/lib/nmdc_runtime/minter/domain 2024-01-29T22:28:58,946 copying nmdc_runtime/minter/domain/model.py -> build/lib/nmdc_runtime/minter/domain 2024-01-29T22:28:58,948 copying nmdc_runtime/minter/domain/__init__.py -> build/lib/nmdc_runtime/minter/domain 2024-01-29T22:28:58,950 creating build/lib/nmdc_runtime/minter/entrypoints 2024-01-29T22:28:58,951 copying nmdc_runtime/minter/entrypoints/__init__.py -> build/lib/nmdc_runtime/minter/entrypoints 2024-01-29T22:28:58,952 copying nmdc_runtime/minter/entrypoints/fastapi_app.py -> build/lib/nmdc_runtime/minter/entrypoints 2024-01-29T22:28:58,954 creating build/lib/nmdc_runtime/site/changesheets 2024-01-29T22:28:58,955 copying nmdc_runtime/site/changesheets/__init__.py -> build/lib/nmdc_runtime/site/changesheets 2024-01-29T22:28:58,957 copying nmdc_runtime/site/changesheets/base.py -> build/lib/nmdc_runtime/site/changesheets 2024-01-29T22:28:58,959 creating build/lib/nmdc_runtime/site/validation 2024-01-29T22:28:58,960 copying nmdc_runtime/site/validation/util.py -> build/lib/nmdc_runtime/site/validation 2024-01-29T22:28:58,962 copying nmdc_runtime/site/validation/__init__.py -> build/lib/nmdc_runtime/site/validation 2024-01-29T22:28:58,963 copying nmdc_runtime/site/validation/emsl.py -> build/lib/nmdc_runtime/site/validation 2024-01-29T22:28:58,965 copying nmdc_runtime/site/validation/gold.py -> build/lib/nmdc_runtime/site/validation 2024-01-29T22:28:58,966 copying nmdc_runtime/site/validation/jgi.py -> build/lib/nmdc_runtime/site/validation 2024-01-29T22:28:58,969 creating build/lib/nmdc_runtime/site/terminusdb 2024-01-29T22:28:58,970 copying nmdc_runtime/site/terminusdb/__init__.py -> build/lib/nmdc_runtime/site/terminusdb 2024-01-29T22:28:58,971 copying nmdc_runtime/site/terminusdb/generate.py -> build/lib/nmdc_runtime/site/terminusdb 2024-01-29T22:28:58,973 copying nmdc_runtime/site/terminusdb/ingest.py -> build/lib/nmdc_runtime/site/terminusdb 2024-01-29T22:28:58,975 copying nmdc_runtime/site/terminusdb/schema.py -> build/lib/nmdc_runtime/site/terminusdb 2024-01-29T22:28:58,978 creating build/lib/nmdc_runtime/site/translation 2024-01-29T22:28:58,979 copying nmdc_runtime/site/translation/util.py -> build/lib/nmdc_runtime/site/translation 2024-01-29T22:28:58,981 copying nmdc_runtime/site/translation/__init__.py -> build/lib/nmdc_runtime/site/translation 2024-01-29T22:28:58,982 copying nmdc_runtime/site/translation/translator.py -> build/lib/nmdc_runtime/site/translation 2024-01-29T22:28:58,984 copying nmdc_runtime/site/translation/gold_translator.py -> build/lib/nmdc_runtime/site/translation 2024-01-29T22:28:58,986 copying nmdc_runtime/site/translation/emsl.py -> build/lib/nmdc_runtime/site/translation 2024-01-29T22:28:58,988 copying nmdc_runtime/site/translation/gold.py -> build/lib/nmdc_runtime/site/translation 2024-01-29T22:28:58,990 copying nmdc_runtime/site/translation/neon_utils.py -> build/lib/nmdc_runtime/site/translation 2024-01-29T22:28:58,992 copying nmdc_runtime/site/translation/submission_portal_translator.py -> build/lib/nmdc_runtime/site/translation 2024-01-29T22:28:58,994 copying nmdc_runtime/site/translation/jgi.py -> build/lib/nmdc_runtime/site/translation 2024-01-29T22:28:58,995 copying nmdc_runtime/site/translation/neon_benthic_translator.py -> build/lib/nmdc_runtime/site/translation 2024-01-29T22:28:58,998 copying nmdc_runtime/site/translation/neon_soil_translator.py -> build/lib/nmdc_runtime/site/translation 2024-01-29T22:28:59,001 creating build/lib/nmdc_runtime/site/backup 2024-01-29T22:28:59,002 copying nmdc_runtime/site/backup/__init__.py -> build/lib/nmdc_runtime/site/backup 2024-01-29T22:28:59,003 copying nmdc_runtime/site/backup/nmdcdb_mongoexport.py -> build/lib/nmdc_runtime/site/backup 2024-01-29T22:28:59,005 copying nmdc_runtime/site/backup/nmdcdb_mongodump.py -> build/lib/nmdc_runtime/site/backup 2024-01-29T22:28:59,007 copying nmdc_runtime/site/backup/nmdcdb_mongoimport.py -> build/lib/nmdc_runtime/site/backup 2024-01-29T22:28:59,009 creating build/lib/nmdc_runtime/site/export 2024-01-29T22:28:59,010 copying nmdc_runtime/site/export/__init__.py -> build/lib/nmdc_runtime/site/export 2024-01-29T22:28:59,012 copying nmdc_runtime/site/export/study_metadata.py -> build/lib/nmdc_runtime/site/export 2024-01-29T22:28:59,014 creating build/lib/nmdc_runtime/site/drsobjects 2024-01-29T22:28:59,015 copying nmdc_runtime/site/drsobjects/__init__.py -> build/lib/nmdc_runtime/site/drsobjects 2024-01-29T22:28:59,016 copying nmdc_runtime/site/drsobjects/ingest.py -> build/lib/nmdc_runtime/site/drsobjects 2024-01-29T22:28:59,018 copying nmdc_runtime/site/drsobjects/registration.py -> build/lib/nmdc_runtime/site/drsobjects 2024-01-29T22:28:59,020 creating build/lib/nmdc_runtime/site/normalization 2024-01-29T22:28:59,021 copying nmdc_runtime/site/normalization/__init__.py -> build/lib/nmdc_runtime/site/normalization 2024-01-29T22:28:59,023 copying nmdc_runtime/site/normalization/gold.py -> build/lib/nmdc_runtime/site/normalization 2024-01-29T22:28:59,025 creating build/lib/nmdc_runtime/infrastructure/database 2024-01-29T22:28:59,026 copying nmdc_runtime/infrastructure/database/db.py -> build/lib/nmdc_runtime/infrastructure/database 2024-01-29T22:28:59,027 copying nmdc_runtime/infrastructure/database/__init__.py -> build/lib/nmdc_runtime/infrastructure/database 2024-01-29T22:28:59,029 creating build/lib/nmdc_runtime/infrastructure/database/models 2024-01-29T22:28:59,030 copying nmdc_runtime/infrastructure/database/models/__init__.py -> build/lib/nmdc_runtime/infrastructure/database/models 2024-01-29T22:28:59,032 copying nmdc_runtime/infrastructure/database/models/user.py -> build/lib/nmdc_runtime/infrastructure/database/models 2024-01-29T22:28:59,079 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-01-29T22:28:59,080 !! 2024-01-29T22:28:59,080 ******************************************************************************** 2024-01-29T22:28:59,081 Please avoid running ``setup.py`` directly. 2024-01-29T22:28:59,081 Instead, use pypa/build, pypa/installer or other 2024-01-29T22:28:59,082 standards-based tools. 2024-01-29T22:28:59,083 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-01-29T22:28:59,083 ******************************************************************************** 2024-01-29T22:28:59,084 !! 2024-01-29T22:28:59,084 self.initialize_options() 2024-01-29T22:28:59,106 installing to build/bdist.linux-armv7l/wheel 2024-01-29T22:28:59,107 running install 2024-01-29T22:28:59,131 running install_lib 2024-01-29T22:28:59,158 creating build/bdist.linux-armv7l 2024-01-29T22:28:59,158 creating build/bdist.linux-armv7l/wheel 2024-01-29T22:28:59,160 creating build/bdist.linux-armv7l/wheel/nmdc_runtime 2024-01-29T22:28:59,161 copying build/lib/nmdc_runtime/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2024-01-29T22:28:59,163 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core 2024-01-29T22:28:59,164 copying build/lib/nmdc_runtime/core/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core 2024-01-29T22:28:59,166 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db 2024-01-29T22:28:59,167 copying build/lib/nmdc_runtime/core/db/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db 2024-01-29T22:28:59,168 copying build/lib/nmdc_runtime/core/db/Database.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db 2024-01-29T22:28:59,171 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2024-01-29T22:28:59,171 copying build/lib/nmdc_runtime/core/exceptions/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2024-01-29T22:28:59,173 copying build/lib/nmdc_runtime/core/exceptions/token.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2024-01-29T22:28:59,175 copying build/lib/nmdc_runtime/core/exceptions/base.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2024-01-29T22:28:59,177 copying build/lib/nmdc_runtime/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2024-01-29T22:28:59,178 copying build/lib/nmdc_runtime/containers.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2024-01-29T22:28:59,180 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/domain 2024-01-29T22:28:59,181 copying build/lib/nmdc_runtime/domain/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain 2024-01-29T22:28:59,183 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2024-01-29T22:28:59,184 copying build/lib/nmdc_runtime/domain/users/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2024-01-29T22:28:59,185 copying build/lib/nmdc_runtime/domain/users/userService.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2024-01-29T22:28:59,187 copying build/lib/nmdc_runtime/domain/users/queriesInterface.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2024-01-29T22:28:59,189 copying build/lib/nmdc_runtime/domain/users/userSchema.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2024-01-29T22:28:59,191 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2024-01-29T22:28:59,192 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters 2024-01-29T22:28:59,193 copying build/lib/nmdc_runtime/minter/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters 2024-01-29T22:28:59,195 copying build/lib/nmdc_runtime/minter/adapters/repository.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters 2024-01-29T22:28:59,197 copying build/lib/nmdc_runtime/minter/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2024-01-29T22:28:59,199 copying build/lib/nmdc_runtime/minter/config.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2024-01-29T22:28:59,201 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain 2024-01-29T22:28:59,202 copying build/lib/nmdc_runtime/minter/domain/model.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain 2024-01-29T22:28:59,203 copying build/lib/nmdc_runtime/minter/domain/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain 2024-01-29T22:28:59,205 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints 2024-01-29T22:28:59,206 copying build/lib/nmdc_runtime/minter/entrypoints/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints 2024-01-29T22:28:59,207 copying build/lib/nmdc_runtime/minter/entrypoints/fastapi_app.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints 2024-01-29T22:28:59,209 copying build/lib/nmdc_runtime/minter/bootstrap.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2024-01-29T22:28:59,211 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2024-01-29T22:28:59,212 copying build/lib/nmdc_runtime/lib/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2024-01-29T22:28:59,214 copying build/lib/nmdc_runtime/lib/nmdc_dataframes.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2024-01-29T22:28:59,216 copying build/lib/nmdc_runtime/lib/load_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2024-01-29T22:28:59,218 copying build/lib/nmdc_runtime/lib/extract_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2024-01-29T22:28:59,220 copying build/lib/nmdc_runtime/lib/nmdc_etl_class.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2024-01-29T22:28:59,222 copying build/lib/nmdc_runtime/lib/transform_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2024-01-29T22:28:59,225 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2024-01-29T22:28:59,226 copying build/lib/nmdc_runtime/site/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2024-01-29T22:28:59,228 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets 2024-01-29T22:28:59,229 copying build/lib/nmdc_runtime/site/changesheets/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets 2024-01-29T22:28:59,231 copying build/lib/nmdc_runtime/site/changesheets/base.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets 2024-01-29T22:28:59,233 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2024-01-29T22:28:59,234 copying build/lib/nmdc_runtime/site/validation/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2024-01-29T22:28:59,236 copying build/lib/nmdc_runtime/site/validation/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2024-01-29T22:28:59,237 copying build/lib/nmdc_runtime/site/validation/emsl.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2024-01-29T22:28:59,239 copying build/lib/nmdc_runtime/site/validation/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2024-01-29T22:28:59,241 copying build/lib/nmdc_runtime/site/validation/jgi.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2024-01-29T22:28:59,242 copying build/lib/nmdc_runtime/site/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2024-01-29T22:28:59,244 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2024-01-29T22:28:59,245 copying build/lib/nmdc_runtime/site/terminusdb/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2024-01-29T22:28:59,247 copying build/lib/nmdc_runtime/site/terminusdb/generate.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2024-01-29T22:28:59,249 copying build/lib/nmdc_runtime/site/terminusdb/ingest.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2024-01-29T22:28:59,251 copying build/lib/nmdc_runtime/site/terminusdb/schema.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2024-01-29T22:28:59,254 copying build/lib/nmdc_runtime/site/resources.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2024-01-29T22:28:59,257 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2024-01-29T22:28:59,258 copying build/lib/nmdc_runtime/site/translation/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2024-01-29T22:28:59,260 copying build/lib/nmdc_runtime/site/translation/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2024-01-29T22:28:59,261 copying build/lib/nmdc_runtime/site/translation/translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2024-01-29T22:28:59,263 copying build/lib/nmdc_runtime/site/translation/gold_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2024-01-29T22:28:59,265 copying build/lib/nmdc_runtime/site/translation/emsl.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2024-01-29T22:28:59,267 copying build/lib/nmdc_runtime/site/translation/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2024-01-29T22:28:59,268 copying build/lib/nmdc_runtime/site/translation/neon_utils.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2024-01-29T22:28:59,271 copying build/lib/nmdc_runtime/site/translation/submission_portal_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2024-01-29T22:28:59,273 copying build/lib/nmdc_runtime/site/translation/jgi.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2024-01-29T22:28:59,275 copying build/lib/nmdc_runtime/site/translation/neon_benthic_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2024-01-29T22:28:59,277 copying build/lib/nmdc_runtime/site/translation/neon_soil_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2024-01-29T22:28:59,280 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2024-01-29T22:28:59,281 copying build/lib/nmdc_runtime/site/backup/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2024-01-29T22:28:59,283 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongoexport.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2024-01-29T22:28:59,285 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongodump.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2024-01-29T22:28:59,286 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongoimport.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2024-01-29T22:28:59,289 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export 2024-01-29T22:28:59,290 copying build/lib/nmdc_runtime/site/export/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export 2024-01-29T22:28:59,291 copying build/lib/nmdc_runtime/site/export/study_metadata.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export 2024-01-29T22:28:59,293 copying build/lib/nmdc_runtime/site/graphs.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2024-01-29T22:28:59,296 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2024-01-29T22:28:59,297 copying build/lib/nmdc_runtime/site/drsobjects/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2024-01-29T22:28:59,298 copying build/lib/nmdc_runtime/site/drsobjects/ingest.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2024-01-29T22:28:59,300 copying build/lib/nmdc_runtime/site/drsobjects/registration.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2024-01-29T22:28:59,302 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization 2024-01-29T22:28:59,303 copying build/lib/nmdc_runtime/site/normalization/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization 2024-01-29T22:28:59,305 copying build/lib/nmdc_runtime/site/normalization/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization 2024-01-29T22:28:59,306 copying build/lib/nmdc_runtime/site/ops.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2024-01-29T22:28:59,309 copying build/lib/nmdc_runtime/site/repository.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2024-01-29T22:28:59,312 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/client 2024-01-29T22:28:59,313 copying build/lib/nmdc_runtime/client/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/client 2024-01-29T22:28:59,314 copying build/lib/nmdc_runtime/main.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2024-01-29T22:28:59,316 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure 2024-01-29T22:28:59,317 copying build/lib/nmdc_runtime/infrastructure/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure 2024-01-29T22:28:59,319 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database 2024-01-29T22:28:59,320 copying build/lib/nmdc_runtime/infrastructure/database/db.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database 2024-01-29T22:28:59,321 copying build/lib/nmdc_runtime/infrastructure/database/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database 2024-01-29T22:28:59,323 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models 2024-01-29T22:28:59,324 copying build/lib/nmdc_runtime/infrastructure/database/models/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models 2024-01-29T22:28:59,326 copying build/lib/nmdc_runtime/infrastructure/database/models/user.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models 2024-01-29T22:28:59,327 running install_egg_info 2024-01-29T22:28:59,356 running egg_info 2024-01-29T22:28:59,383 writing nmdc_runtime.egg-info/PKG-INFO 2024-01-29T22:28:59,386 writing dependency_links to nmdc_runtime.egg-info/dependency_links.txt 2024-01-29T22:28:59,388 writing entry points to nmdc_runtime.egg-info/entry_points.txt 2024-01-29T22:28:59,390 writing top-level names to nmdc_runtime.egg-info/top_level.txt 2024-01-29T22:28:59,499 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-01-29T22:28:59,502 reading manifest file 'nmdc_runtime.egg-info/SOURCES.txt' 2024-01-29T22:28:59,561 adding license file 'LICENSE' 2024-01-29T22:28:59,577 writing manifest file 'nmdc_runtime.egg-info/SOURCES.txt' 2024-01-29T22:28:59,579 Copying nmdc_runtime.egg-info to build/bdist.linux-armv7l/wheel/nmdc_runtime-1.3.0-py3.11.egg-info 2024-01-29T22:28:59,589 running install_scripts 2024-01-29T22:28:59,603 creating build/bdist.linux-armv7l/wheel/nmdc_runtime-1.3.0.dist-info/WHEEL 2024-01-29T22:28:59,606 creating '/tmp/pip-wheel-zu3m98e3/nmdc_runtime-1.3.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-01-29T22:28:59,608 adding 'nmdc_runtime/__init__.py' 2024-01-29T22:28:59,609 adding 'nmdc_runtime/containers.py' 2024-01-29T22:28:59,610 adding 'nmdc_runtime/main.py' 2024-01-29T22:28:59,613 adding 'nmdc_runtime/util.py' 2024-01-29T22:28:59,615 adding 'nmdc_runtime/client/__init__.py' 2024-01-29T22:28:59,617 adding 'nmdc_runtime/core/__init__.py' 2024-01-29T22:28:59,619 adding 'nmdc_runtime/core/db/Database.py' 2024-01-29T22:28:59,620 adding 'nmdc_runtime/core/db/__init__.py' 2024-01-29T22:28:59,622 adding 'nmdc_runtime/core/exceptions/__init__.py' 2024-01-29T22:28:59,623 adding 'nmdc_runtime/core/exceptions/base.py' 2024-01-29T22:28:59,624 adding 'nmdc_runtime/core/exceptions/token.py' 2024-01-29T22:28:59,626 adding 'nmdc_runtime/domain/__init__.py' 2024-01-29T22:28:59,628 adding 'nmdc_runtime/domain/users/__init__.py' 2024-01-29T22:28:59,629 adding 'nmdc_runtime/domain/users/queriesInterface.py' 2024-01-29T22:28:59,630 adding 'nmdc_runtime/domain/users/userSchema.py' 2024-01-29T22:28:59,631 adding 'nmdc_runtime/domain/users/userService.py' 2024-01-29T22:28:59,633 adding 'nmdc_runtime/infrastructure/__init__.py' 2024-01-29T22:28:59,634 adding 'nmdc_runtime/infrastructure/database/__init__.py' 2024-01-29T22:28:59,635 adding 'nmdc_runtime/infrastructure/database/db.py' 2024-01-29T22:28:59,637 adding 'nmdc_runtime/infrastructure/database/models/__init__.py' 2024-01-29T22:28:59,638 adding 'nmdc_runtime/infrastructure/database/models/user.py' 2024-01-29T22:28:59,639 adding 'nmdc_runtime/lib/__init__.py' 2024-01-29T22:28:59,640 adding 'nmdc_runtime/lib/extract_nmdc_data.py' 2024-01-29T22:28:59,642 adding 'nmdc_runtime/lib/load_nmdc_data.py' 2024-01-29T22:28:59,645 adding 'nmdc_runtime/lib/nmdc_dataframes.py' 2024-01-29T22:28:59,647 adding 'nmdc_runtime/lib/nmdc_etl_class.py' 2024-01-29T22:28:59,652 adding 'nmdc_runtime/lib/transform_nmdc_data.py' 2024-01-29T22:28:59,654 adding 'nmdc_runtime/minter/__init__.py' 2024-01-29T22:28:59,655 adding 'nmdc_runtime/minter/bootstrap.py' 2024-01-29T22:28:59,656 adding 'nmdc_runtime/minter/config.py' 2024-01-29T22:28:59,658 adding 'nmdc_runtime/minter/adapters/__init__.py' 2024-01-29T22:28:59,660 adding 'nmdc_runtime/minter/adapters/repository.py' 2024-01-29T22:28:59,661 adding 'nmdc_runtime/minter/domain/__init__.py' 2024-01-29T22:28:59,662 adding 'nmdc_runtime/minter/domain/model.py' 2024-01-29T22:28:59,664 adding 'nmdc_runtime/minter/entrypoints/__init__.py' 2024-01-29T22:28:59,665 adding 'nmdc_runtime/minter/entrypoints/fastapi_app.py' 2024-01-29T22:28:59,667 adding 'nmdc_runtime/site/__init__.py' 2024-01-29T22:28:59,668 adding 'nmdc_runtime/site/graphs.py' 2024-01-29T22:28:59,672 adding 'nmdc_runtime/site/ops.py' 2024-01-29T22:28:59,675 adding 'nmdc_runtime/site/repository.py' 2024-01-29T22:28:59,677 adding 'nmdc_runtime/site/resources.py' 2024-01-29T22:28:59,678 adding 'nmdc_runtime/site/util.py' 2024-01-29T22:28:59,680 adding 'nmdc_runtime/site/backup/__init__.py' 2024-01-29T22:28:59,681 adding 'nmdc_runtime/site/backup/nmdcdb_mongodump.py' 2024-01-29T22:28:59,682 adding 'nmdc_runtime/site/backup/nmdcdb_mongoexport.py' 2024-01-29T22:28:59,684 adding 'nmdc_runtime/site/backup/nmdcdb_mongoimport.py' 2024-01-29T22:28:59,685 adding 'nmdc_runtime/site/changesheets/__init__.py' 2024-01-29T22:28:59,687 adding 'nmdc_runtime/site/changesheets/base.py' 2024-01-29T22:28:59,688 adding 'nmdc_runtime/site/drsobjects/__init__.py' 2024-01-29T22:28:59,690 adding 'nmdc_runtime/site/drsobjects/ingest.py' 2024-01-29T22:28:59,691 adding 'nmdc_runtime/site/drsobjects/registration.py' 2024-01-29T22:28:59,693 adding 'nmdc_runtime/site/export/__init__.py' 2024-01-29T22:28:59,694 adding 'nmdc_runtime/site/export/study_metadata.py' 2024-01-29T22:28:59,696 adding 'nmdc_runtime/site/normalization/__init__.py' 2024-01-29T22:28:59,697 adding 'nmdc_runtime/site/normalization/gold.py' 2024-01-29T22:28:59,699 adding 'nmdc_runtime/site/terminusdb/__init__.py' 2024-01-29T22:28:59,700 adding 'nmdc_runtime/site/terminusdb/generate.py' 2024-01-29T22:28:59,702 adding 'nmdc_runtime/site/terminusdb/ingest.py' 2024-01-29T22:28:59,710 adding 'nmdc_runtime/site/terminusdb/schema.py' 2024-01-29T22:28:59,712 adding 'nmdc_runtime/site/translation/__init__.py' 2024-01-29T22:28:59,713 adding 'nmdc_runtime/site/translation/emsl.py' 2024-01-29T22:28:59,714 adding 'nmdc_runtime/site/translation/gold.py' 2024-01-29T22:28:59,717 adding 'nmdc_runtime/site/translation/gold_translator.py' 2024-01-29T22:28:59,719 adding 'nmdc_runtime/site/translation/jgi.py' 2024-01-29T22:28:59,722 adding 'nmdc_runtime/site/translation/neon_benthic_translator.py' 2024-01-29T22:28:59,725 adding 'nmdc_runtime/site/translation/neon_soil_translator.py' 2024-01-29T22:28:59,727 adding 'nmdc_runtime/site/translation/neon_utils.py' 2024-01-29T22:28:59,731 adding 'nmdc_runtime/site/translation/submission_portal_translator.py' 2024-01-29T22:28:59,732 adding 'nmdc_runtime/site/translation/translator.py' 2024-01-29T22:28:59,733 adding 'nmdc_runtime/site/translation/util.py' 2024-01-29T22:28:59,735 adding 'nmdc_runtime/site/validation/__init__.py' 2024-01-29T22:28:59,736 adding 'nmdc_runtime/site/validation/emsl.py' 2024-01-29T22:28:59,737 adding 'nmdc_runtime/site/validation/gold.py' 2024-01-29T22:28:59,739 adding 'nmdc_runtime/site/validation/jgi.py' 2024-01-29T22:28:59,740 adding 'nmdc_runtime/site/validation/util.py' 2024-01-29T22:28:59,742 adding 'nmdc_runtime-1.3.0.dist-info/LICENSE' 2024-01-29T22:28:59,744 adding 'nmdc_runtime-1.3.0.dist-info/METADATA' 2024-01-29T22:28:59,745 adding 'nmdc_runtime-1.3.0.dist-info/WHEEL' 2024-01-29T22:28:59,745 adding 'nmdc_runtime-1.3.0.dist-info/entry_points.txt' 2024-01-29T22:28:59,746 adding 'nmdc_runtime-1.3.0.dist-info/top_level.txt' 2024-01-29T22:28:59,748 adding 'nmdc_runtime-1.3.0.dist-info/RECORD' 2024-01-29T22:28:59,751 removing build/bdist.linux-armv7l/wheel 2024-01-29T22:28:59,893 Building wheel for nmdc-runtime (setup.py): finished with status 'done' 2024-01-29T22:28:59,896 Created wheel for nmdc-runtime: filename=nmdc_runtime-1.3.0-py3-none-any.whl size=127811 sha256=0470dc180053c632fdedb5c4790ae0a3c0a29166f757dbe51f2e9bb5016d728e 2024-01-29T22:28:59,898 Stored in directory: /tmp/pip-ephem-wheel-cache-zsxvn27j/wheels/21/36/78/9bcd64c2d6e141150233f12fc5698f9b2989e4d23dd8b25838 2024-01-29T22:28:59,910 Successfully built nmdc-runtime 2024-01-29T22:28:59,917 Removed build tracker: '/tmp/pip-build-tracker-jxeaqpip'