2024-01-29T23:36:24,654 Created temporary directory: /tmp/pip-build-tracker-hxb0btic 2024-01-29T23:36:24,655 Initialized build tracking at /tmp/pip-build-tracker-hxb0btic 2024-01-29T23:36:24,656 Created build tracker: /tmp/pip-build-tracker-hxb0btic 2024-01-29T23:36:24,656 Entered build tracker: /tmp/pip-build-tracker-hxb0btic 2024-01-29T23:36:24,658 Created temporary directory: /tmp/pip-wheel-cabula18 2024-01-29T23:36:24,661 Created temporary directory: /tmp/pip-ephem-wheel-cache-ltwdvd3f 2024-01-29T23:36:24,686 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-29T23:36:24,690 2 location(s) to search for versions of cas-tools: 2024-01-29T23:36:24,690 * https://pypi.org/simple/cas-tools/ 2024-01-29T23:36:24,690 * https://www.piwheels.org/simple/cas-tools/ 2024-01-29T23:36:24,691 Fetching project page and analyzing links: https://pypi.org/simple/cas-tools/ 2024-01-29T23:36:24,692 Getting page https://pypi.org/simple/cas-tools/ 2024-01-29T23:36:24,693 Found index url https://pypi.org/simple/ 2024-01-29T23:36:24,922 Fetched page https://pypi.org/simple/cas-tools/ as application/vnd.pypi.simple.v1+json 2024-01-29T23:36:24,929 Found link https://files.pythonhosted.org/packages/39/25/84ad8f63a94c6504874dc8b8952559a8173e31c44d7085681005874aaaec/cas-tools-0.0.1.dev1.tar.gz (from https://pypi.org/simple/cas-tools/), version: 0.0.1.dev1 2024-01-29T23:36:24,930 Skipping link: No binaries permitted for cas-tools: https://files.pythonhosted.org/packages/e7/15/c3d6bdb34ca613e297547d37a7d1500eb43dd369b4086bdf2564fb8abce8/cas_tools-0.0.1.dev1-py3-none-any.whl (from https://pypi.org/simple/cas-tools/) 2024-01-29T23:36:24,930 Found link https://files.pythonhosted.org/packages/8b/08/a7b6ef7b2d95e0c54aecb418b2d9659844b67aa83fdfebe6ea61e276a64d/cas-tools-0.0.1.dev2.tar.gz (from https://pypi.org/simple/cas-tools/), version: 0.0.1.dev2 2024-01-29T23:36:24,931 Skipping link: No binaries permitted for cas-tools: https://files.pythonhosted.org/packages/08/9b/16ebcd2b8da3b0b0ca1000a97c32d40ded9b724fef4deecc5ff6a6121c26/cas_tools-0.0.1.dev2-py3-none-any.whl (from https://pypi.org/simple/cas-tools/) 2024-01-29T23:36:24,932 Found link https://files.pythonhosted.org/packages/f2/fd/47959f06131aa2719e7f23e8f7a717b352712324361eb34cd0123eccb913/cas-tools-0.0.1.dev3.tar.gz (from https://pypi.org/simple/cas-tools/), version: 0.0.1.dev3 2024-01-29T23:36:24,932 Skipping link: No binaries permitted for cas-tools: https://files.pythonhosted.org/packages/38/43/db7f7e682c3100d5228b1cd6bb12ec5d6c1ed4d1413ff9e7af0b9d6c01c1/cas_tools-0.0.1.dev3-py3-none-any.whl (from https://pypi.org/simple/cas-tools/) 2024-01-29T23:36:24,933 Found link https://files.pythonhosted.org/packages/5b/59/a17368c4058f72bb2058ee66924fed3e3bd76d7d080bde1930e5e9a916f3/cas-tools-0.0.1.dev4.tar.gz (from https://pypi.org/simple/cas-tools/), version: 0.0.1.dev4 2024-01-29T23:36:24,934 Skipping link: No binaries permitted for cas-tools: https://files.pythonhosted.org/packages/20/02/ebab61043190922d625bc6b41c2404962077e3b2813832ccec36959ae39c/cas_tools-0.0.1.dev4-py3-none-any.whl (from https://pypi.org/simple/cas-tools/) 2024-01-29T23:36:24,934 Found link https://files.pythonhosted.org/packages/c0/26/eb1701b654d3ca93f9d6ddc1cc7bafde1a2414a3942a27fbd00f88bd837c/cas-tools-0.0.1.dev5.tar.gz (from https://pypi.org/simple/cas-tools/), version: 0.0.1.dev5 2024-01-29T23:36:24,935 Skipping link: No binaries permitted for cas-tools: https://files.pythonhosted.org/packages/34/e3/66acaf2480221181a8bad0260749bfd4ea7d49d94497834ed076f7f314c4/cas_tools-0.0.1.dev5-py3-none-any.whl (from https://pypi.org/simple/cas-tools/) 2024-01-29T23:36:24,936 Found link https://files.pythonhosted.org/packages/31/fe/edf3090b4fce3a360bedde089374c1e8e427b26dab7874ac90c8e02b2500/cas-tools-0.0.1.dev6.tar.gz (from https://pypi.org/simple/cas-tools/), version: 0.0.1.dev6 2024-01-29T23:36:24,937 Skipping link: No binaries permitted for cas-tools: https://files.pythonhosted.org/packages/e6/e8/af79cbbc4e5b1328d467ce4440ab6d41a651808431a66f1b53203e54e63e/cas_tools-0.0.1.dev6-py3-none-any.whl (from https://pypi.org/simple/cas-tools/) 2024-01-29T23:36:24,937 Found link https://files.pythonhosted.org/packages/5d/c6/45849e4bb4acb7ab50dc597dddee9a85ebc66a0293c618fb53d068b48459/cas-tools-0.0.1.dev7.tar.gz (from https://pypi.org/simple/cas-tools/), version: 0.0.1.dev7 2024-01-29T23:36:24,938 Skipping link: No binaries permitted for cas-tools: https://files.pythonhosted.org/packages/77/a6/b1664a1fc48c6e04bee19da0fbd2d517fed8603b7adf7e7c3556b51f46bb/cas_tools-0.0.1.dev7-py3-none-any.whl (from https://pypi.org/simple/cas-tools/) 2024-01-29T23:36:24,939 Found link https://files.pythonhosted.org/packages/b9/5e/39f97fb29d99b0ef2f2ffcffe6cab596041f77151661c1a2ce8808c686da/cas-tools-0.0.1.dev8.tar.gz (from https://pypi.org/simple/cas-tools/), version: 0.0.1.dev8 2024-01-29T23:36:24,940 Skipping link: No binaries permitted for cas-tools: https://files.pythonhosted.org/packages/fe/5b/e35e24291fc1dc7deb8412af12e8ef38d089aa68cd1559e13671183637d9/cas_tools-0.0.1.dev8-py3-none-any.whl (from https://pypi.org/simple/cas-tools/) 2024-01-29T23:36:24,940 Found link https://files.pythonhosted.org/packages/28/ec/5317b3525f1d8446524985a0eafd9be6ebd8d7ada90d82fef5a5830a585f/cas-tools-0.0.1.dev9.tar.gz (from https://pypi.org/simple/cas-tools/), version: 0.0.1.dev9 2024-01-29T23:36:24,941 Skipping link: No binaries permitted for cas-tools: https://files.pythonhosted.org/packages/5f/03/908dbfa19ffc6f6f5ca2af139a014f6c37df11b806ea533b4f60b455483f/cas_tools-0.0.1.dev9-py3-none-any.whl (from https://pypi.org/simple/cas-tools/) 2024-01-29T23:36:24,942 Found link https://files.pythonhosted.org/packages/bc/7b/8d83e7c4a8092e943f141e7355efee65d1073c627ca29010a1d6b3de3c49/cas-tools-0.0.1.dev10.tar.gz (from https://pypi.org/simple/cas-tools/), version: 0.0.1.dev10 2024-01-29T23:36:24,942 Skipping link: No binaries permitted for cas-tools: https://files.pythonhosted.org/packages/5c/8f/e3ab1e6bfd12e8923bed3f58deb4f7c9b78cf8bfbefa99ca056a2b2cc629/cas_tools-0.0.1.dev10-py3-none-any.whl (from https://pypi.org/simple/cas-tools/) 2024-01-29T23:36:24,943 Found link https://files.pythonhosted.org/packages/0f/7f/e5292b1dd5194b69f1c889d61a1b7d4de6626bc028686c2820b8dc2ef9bc/cas-tools-0.0.1.dev11.tar.gz (from https://pypi.org/simple/cas-tools/), version: 0.0.1.dev11 2024-01-29T23:36:24,943 Skipping link: No binaries permitted for cas-tools: https://files.pythonhosted.org/packages/44/d5/fade1277a18d2b06d23c28aa588ffa830cded8700d3f5df0aeb1dc96df50/cas_tools-0.0.1.dev11-py3-none-any.whl (from https://pypi.org/simple/cas-tools/) 2024-01-29T23:36:24,944 Found link https://files.pythonhosted.org/packages/9f/bf/165ae60044eba072c68d8b261243f9426db3a1b1350baa015b8ddedd2b86/cas-tools-0.0.1.dev12.tar.gz (from https://pypi.org/simple/cas-tools/), version: 0.0.1.dev12 2024-01-29T23:36:24,944 Skipping link: No binaries permitted for cas-tools: https://files.pythonhosted.org/packages/0a/a4/16192439bc57c9b465c7cb24662df299d0e9a77f09c72784902afb233662/cas_tools-0.0.1.dev12-py3-none-any.whl (from https://pypi.org/simple/cas-tools/) 2024-01-29T23:36:24,945 Found link https://files.pythonhosted.org/packages/37/27/4cc8301140c475d6780032593c4deea90ad16d67f782990c9589f25e3519/cas-tools-0.0.1.dev13.tar.gz (from https://pypi.org/simple/cas-tools/), version: 0.0.1.dev13 2024-01-29T23:36:24,946 Skipping link: No binaries permitted for cas-tools: https://files.pythonhosted.org/packages/b3/dd/0b1250e6647c40800b78e5b8f45e2a84ca3d65ab68ec0d4b453accd79e8f/cas_tools-0.0.1.dev13-py3-none-any.whl (from https://pypi.org/simple/cas-tools/) 2024-01-29T23:36:24,946 Found link https://files.pythonhosted.org/packages/37/56/8d87b34b0fa0bda9637b14c9c9e276111f70a087daf852bd12a33f7fff89/cas-tools-0.0.1.dev14.tar.gz (from https://pypi.org/simple/cas-tools/), version: 0.0.1.dev14 2024-01-29T23:36:24,947 Skipping link: No binaries permitted for cas-tools: https://files.pythonhosted.org/packages/1c/44/08fb4da0aa85fcfd760ddaac70ca351555e5cdb9c69fb22d7418a6e38426/cas_tools-0.0.1.dev14-py3-none-any.whl (from https://pypi.org/simple/cas-tools/) 2024-01-29T23:36:24,948 Found link https://files.pythonhosted.org/packages/5e/98/b60cc82877f997bd14869c5316252cac4a7477bd91b9b30c9b1e07ba18ac/cas-tools-0.0.1.dev15.tar.gz (from https://pypi.org/simple/cas-tools/), version: 0.0.1.dev15 2024-01-29T23:36:24,948 Skipping link: No binaries permitted for cas-tools: https://files.pythonhosted.org/packages/95/77/3c8ce5ea7b0d732bad978eb26860fcee326d5582e8b92c297ebfdba81bd1/cas_tools-0.0.1.dev15-py3-none-any.whl (from https://pypi.org/simple/cas-tools/) 2024-01-29T23:36:24,949 Found link https://files.pythonhosted.org/packages/c0/b5/d2fd553d3eea371285b4f00a1c6ed5c3c3c051918832fb1018c1b7de153d/cas-tools-0.0.1.dev16.tar.gz (from https://pypi.org/simple/cas-tools/), version: 0.0.1.dev16 2024-01-29T23:36:24,950 Skipping link: No binaries permitted for cas-tools: https://files.pythonhosted.org/packages/bf/85/3dc0b577a01e748c45bf41307d9704d870fa882559666adf9898f917c52b/cas_tools-0.0.1.dev16-py3-none-any.whl (from https://pypi.org/simple/cas-tools/) 2024-01-29T23:36:24,950 Fetching project page and analyzing links: https://www.piwheels.org/simple/cas-tools/ 2024-01-29T23:36:24,951 Getting page https://www.piwheels.org/simple/cas-tools/ 2024-01-29T23:36:24,952 Found index url https://www.piwheels.org/simple/ 2024-01-29T23:36:25,139 Fetched page https://www.piwheels.org/simple/cas-tools/ as text/html 2024-01-29T23:36:25,144 Skipping link: No binaries permitted for cas-tools: https://www.piwheels.org/simple/cas-tools/cas_tools-0.0.1.dev15-py3-none-any.whl#sha256=c8f20276930c882ece588c3c88d90f713b010c24cc51b566a176e65dc91e9023 (from https://www.piwheels.org/simple/cas-tools/) 2024-01-29T23:36:25,145 Skipping link: No binaries permitted for cas-tools: https://www.piwheels.org/simple/cas-tools/cas_tools-0.0.1.dev14-py3-none-any.whl#sha256=0ea8f51a2a54a73c13c73f9db360c2f3f711335a1eca2627d841cc172bf45db1 (from https://www.piwheels.org/simple/cas-tools/) 2024-01-29T23:36:25,145 Skipping link: No binaries permitted for cas-tools: https://www.piwheels.org/simple/cas-tools/cas_tools-0.0.1.dev13-py3-none-any.whl#sha256=e697eaf479a7f95a0617d50fb7d163d0ab959e46ed2005321b0e27a51615ea2c (from https://www.piwheels.org/simple/cas-tools/) 2024-01-29T23:36:25,146 Skipping link: No binaries permitted for cas-tools: https://www.piwheels.org/simple/cas-tools/cas_tools-0.0.1.dev12-py3-none-any.whl#sha256=8660a36d5ae41976b5432bb558e135257d612ebc8e96ee454a76c8c3c2df9d67 (from https://www.piwheels.org/simple/cas-tools/) 2024-01-29T23:36:25,146 Skipping link: No binaries permitted for cas-tools: https://www.piwheels.org/simple/cas-tools/cas_tools-0.0.1.dev11-py3-none-any.whl#sha256=253c8aaaf9e5dfd4dc32c5ed874598cd8ff2b9cd53db343dbd0c0e8131f47d01 (from https://www.piwheels.org/simple/cas-tools/) 2024-01-29T23:36:25,147 Skipping link: No binaries permitted for cas-tools: https://www.piwheels.org/simple/cas-tools/cas_tools-0.0.1.dev10-py3-none-any.whl#sha256=cc4db5cf1635cbcd278f78a84186e9c09806ec8d464217ed194e9afb2be4ee3c (from https://www.piwheels.org/simple/cas-tools/) 2024-01-29T23:36:25,147 Skipping link: No binaries permitted for cas-tools: https://www.piwheels.org/simple/cas-tools/cas_tools-0.0.1.dev9-py3-none-any.whl#sha256=d97fac5cb8e95f16397eb584ae82b0a123f953ea6c4b6ff1b27f087f6d2994ab (from https://www.piwheels.org/simple/cas-tools/) 2024-01-29T23:36:25,148 Skipping link: No binaries permitted for cas-tools: https://www.piwheels.org/simple/cas-tools/cas_tools-0.0.1.dev8-py3-none-any.whl#sha256=a6b2c441ada4352e8fe5b485ab027ee916fd54a1d613bc971749ec6d9e5978de (from https://www.piwheels.org/simple/cas-tools/) 2024-01-29T23:36:25,149 Skipping link: No binaries permitted for cas-tools: https://www.piwheels.org/simple/cas-tools/cas_tools-0.0.1.dev7-py3-none-any.whl#sha256=1826022909039fd8092dfa0adffda8e6833e680ec85b2938c90f77725fb1feb9 (from https://www.piwheels.org/simple/cas-tools/) 2024-01-29T23:36:25,149 Skipping link: No binaries permitted for cas-tools: https://www.piwheels.org/simple/cas-tools/cas_tools-0.0.1.dev6-py3-none-any.whl#sha256=bc9d549ee95988005db8b88068e8b4b17d21a1e4ffa5c2045f683c29cfb33f44 (from https://www.piwheels.org/simple/cas-tools/) 2024-01-29T23:36:25,150 Skipping link: No binaries permitted for cas-tools: https://www.piwheels.org/simple/cas-tools/cas_tools-0.0.1.dev5-py3-none-any.whl#sha256=106deb4084f234e1be8e30df33ac79669672b14a15caefd6069b584efbdefdbf (from https://www.piwheels.org/simple/cas-tools/) 2024-01-29T23:36:25,151 Skipping link: No binaries permitted for cas-tools: https://www.piwheels.org/simple/cas-tools/cas_tools-0.0.1.dev4-py3-none-any.whl#sha256=884485f1e67d6bcfc0781f3645378fcef01d605eab258622c0291a7d1e81b845 (from https://www.piwheels.org/simple/cas-tools/) 2024-01-29T23:36:25,151 Skipping link: No binaries permitted for cas-tools: https://www.piwheels.org/simple/cas-tools/cas_tools-0.0.1.dev3-py3-none-any.whl#sha256=abf7a34cd83393262dd0c884c087f0578be24c49c3c6b7f70d97a5370a799502 (from https://www.piwheels.org/simple/cas-tools/) 2024-01-29T23:36:25,152 Skipping link: No binaries permitted for cas-tools: https://www.piwheels.org/simple/cas-tools/cas_tools-0.0.1.dev2-py3-none-any.whl#sha256=2befe7822c5dcdf4c1c1c1041bea4b8ff79fdba77c1a19dfd2655d8e05ede19f (from https://www.piwheels.org/simple/cas-tools/) 2024-01-29T23:36:25,152 Skipping link: No binaries permitted for cas-tools: https://www.piwheels.org/simple/cas-tools/cas_tools-0.0.1.dev1-py3-none-any.whl#sha256=44c420d45db20626cfaa3e67b0fac798db383ceeda7559e02131debe0722a092 (from https://www.piwheels.org/simple/cas-tools/) 2024-01-29T23:36:25,153 Skipping link: not a file: https://www.piwheels.org/simple/cas-tools/ 2024-01-29T23:36:25,153 Skipping link: not a file: https://pypi.org/simple/cas-tools/ 2024-01-29T23:36:25,174 Given no hashes to check 1 links for project 'cas-tools': discarding no candidates 2024-01-29T23:36:25,192 Collecting cas-tools==0.0.1.dev16 2024-01-29T23:36:25,195 Created temporary directory: /tmp/pip-unpack-m0m_gc_u 2024-01-29T23:36:25,421 Downloading cas-tools-0.0.1.dev16.tar.gz (23 kB) 2024-01-29T23:36:25,501 Added cas-tools==0.0.1.dev16 from https://files.pythonhosted.org/packages/c0/b5/d2fd553d3eea371285b4f00a1c6ed5c3c3c051918832fb1018c1b7de153d/cas-tools-0.0.1.dev16.tar.gz to build tracker '/tmp/pip-build-tracker-hxb0btic' 2024-01-29T23:36:25,503 Running setup.py (path:/tmp/pip-wheel-cabula18/cas-tools_c2c75ea2072b4896a6942ff629257522/setup.py) egg_info for package cas-tools 2024-01-29T23:36:25,504 Created temporary directory: /tmp/pip-pip-egg-info-iszjkbvu 2024-01-29T23:36:25,505 Preparing metadata (setup.py): started 2024-01-29T23:36:25,506 Running command python setup.py egg_info 2024-01-29T23:36:38,161 running egg_info 2024-01-29T23:36:38,163 creating /tmp/pip-pip-egg-info-iszjkbvu/cas_tools.egg-info 2024-01-29T23:36:38,194 writing /tmp/pip-pip-egg-info-iszjkbvu/cas_tools.egg-info/PKG-INFO 2024-01-29T23:36:38,198 writing dependency_links to /tmp/pip-pip-egg-info-iszjkbvu/cas_tools.egg-info/dependency_links.txt 2024-01-29T23:36:38,200 writing entry points to /tmp/pip-pip-egg-info-iszjkbvu/cas_tools.egg-info/entry_points.txt 2024-01-29T23:36:38,202 writing requirements to /tmp/pip-pip-egg-info-iszjkbvu/cas_tools.egg-info/requires.txt 2024-01-29T23:36:38,204 writing top-level names to /tmp/pip-pip-egg-info-iszjkbvu/cas_tools.egg-info/top_level.txt 2024-01-29T23:36:38,206 writing manifest file '/tmp/pip-pip-egg-info-iszjkbvu/cas_tools.egg-info/SOURCES.txt' 2024-01-29T23:36:38,301 reading manifest file '/tmp/pip-pip-egg-info-iszjkbvu/cas_tools.egg-info/SOURCES.txt' 2024-01-29T23:36:38,303 reading manifest template 'MANIFEST.in' 2024-01-29T23:36:38,307 writing manifest file '/tmp/pip-pip-egg-info-iszjkbvu/cas_tools.egg-info/SOURCES.txt' 2024-01-29T23:36:38,414 Preparing metadata (setup.py): finished with status 'done' 2024-01-29T23:36:39,071 Source in /tmp/pip-wheel-cabula18/cas-tools_c2c75ea2072b4896a6942ff629257522 has version 0.0.1.dev16, which satisfies requirement cas-tools==0.0.1.dev16 from https://files.pythonhosted.org/packages/c0/b5/d2fd553d3eea371285b4f00a1c6ed5c3c3c051918832fb1018c1b7de153d/cas-tools-0.0.1.dev16.tar.gz 2024-01-29T23:36:39,074 Removed cas-tools==0.0.1.dev16 from https://files.pythonhosted.org/packages/c0/b5/d2fd553d3eea371285b4f00a1c6ed5c3c3c051918832fb1018c1b7de153d/cas-tools-0.0.1.dev16.tar.gz from build tracker '/tmp/pip-build-tracker-hxb0btic' 2024-01-29T23:36:39,084 Created temporary directory: /tmp/pip-unpack-yxbbyrl0 2024-01-29T23:36:39,088 Created temporary directory: /tmp/pip-unpack-9q81v659 2024-01-29T23:36:39,107 Building wheels for collected packages: cas-tools 2024-01-29T23:36:39,116 Created temporary directory: /tmp/pip-wheel-e9zcqb8u 2024-01-29T23:36:39,117 Building wheel for cas-tools (setup.py): started 2024-01-29T23:36:39,186 Destination directory: /tmp/pip-wheel-e9zcqb8u 2024-01-29T23:36:39,417 Running command python setup.py bdist_wheel 2024-01-29T23:36:41,648 running bdist_wheel 2024-01-29T23:36:41,751 running build 2024-01-29T23:36:41,752 running build_py 2024-01-29T23:36:41,781 creating build 2024-01-29T23:36:41,782 creating build/lib 2024-01-29T23:36:41,783 creating build/lib/cas 2024-01-29T23:36:41,784 copying src/cas/spreadsheet_to_cas.py -> build/lib/cas 2024-01-29T23:36:41,787 copying src/cas/flatten_data_to_tables.py -> build/lib/cas 2024-01-29T23:36:41,790 copying src/cas/reports.py -> build/lib/cas 2024-01-29T23:36:41,792 copying src/cas/__init__.py -> build/lib/cas 2024-01-29T23:36:41,794 copying src/cas/file_utils.py -> build/lib/cas 2024-01-29T23:36:41,797 copying src/cas/populate_cell_ids.py -> build/lib/cas 2024-01-29T23:36:41,800 copying src/cas/model.py -> build/lib/cas 2024-01-29T23:36:41,802 copying src/cas/validate.py -> build/lib/cas 2024-01-29T23:36:41,804 copying src/cas/__main__.py -> build/lib/cas 2024-01-29T23:36:41,807 copying src/cas/flatten_data_to_anndata.py -> build/lib/cas 2024-01-29T23:36:41,809 copying src/cas/anndata_conversion.py -> build/lib/cas 2024-01-29T23:36:41,813 creating build/lib/cas/accession 2024-01-29T23:36:41,814 copying src/cas/accession/base_accession_manager.py -> build/lib/cas/accession 2024-01-29T23:36:41,816 copying src/cas/accession/__init__.py -> build/lib/cas/accession 2024-01-29T23:36:41,818 copying src/cas/accession/hash_accession_manager.py -> build/lib/cas/accession 2024-01-29T23:36:41,821 copying src/cas/accession/incremental_accession_manager.py -> build/lib/cas/accession 2024-01-29T23:36:41,824 creating build/lib/cas/ingest 2024-01-29T23:36:41,825 copying src/cas/ingest/__init__.py -> build/lib/cas/ingest 2024-01-29T23:36:41,827 copying src/cas/ingest/ingest_user_table.py -> build/lib/cas/ingest 2024-01-29T23:36:41,829 copying src/cas/ingest/config_validator.py -> build/lib/cas/ingest 2024-01-29T23:36:41,832 creating build/lib/cas/matrix_file 2024-01-29T23:36:41,833 copying src/cas/matrix_file/resolver.py -> build/lib/cas/matrix_file 2024-01-29T23:36:41,836 copying src/cas/matrix_file/base_resolver.py -> build/lib/cas/matrix_file 2024-01-29T23:36:41,837 copying src/cas/matrix_file/__init__.py -> build/lib/cas/matrix_file 2024-01-29T23:36:41,839 copying src/cas/matrix_file/cxg_resolver.py -> build/lib/cas/matrix_file 2024-01-29T23:36:41,841 running egg_info 2024-01-29T23:36:41,900 writing src/cas_tools.egg-info/PKG-INFO 2024-01-29T23:36:41,904 writing dependency_links to src/cas_tools.egg-info/dependency_links.txt 2024-01-29T23:36:41,905 writing entry points to src/cas_tools.egg-info/entry_points.txt 2024-01-29T23:36:41,908 writing requirements to src/cas_tools.egg-info/requires.txt 2024-01-29T23:36:41,910 writing top-level names to src/cas_tools.egg-info/top_level.txt 2024-01-29T23:36:41,940 reading manifest file 'src/cas_tools.egg-info/SOURCES.txt' 2024-01-29T23:36:41,943 reading manifest template 'MANIFEST.in' 2024-01-29T23:36:41,947 writing manifest file 'src/cas_tools.egg-info/SOURCES.txt' 2024-01-29T23:36:41,951 copying src/cas/ingest/config_schema.yaml -> build/lib/cas/ingest 2024-01-29T23:36:41,979 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-01-29T23:36:41,980 !! 2024-01-29T23:36:41,981 ******************************************************************************** 2024-01-29T23:36:41,981 Please avoid running ``setup.py`` directly. 2024-01-29T23:36:41,982 Instead, use pypa/build, pypa/installer or other 2024-01-29T23:36:41,983 standards-based tools. 2024-01-29T23:36:41,984 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-01-29T23:36:41,985 ******************************************************************************** 2024-01-29T23:36:41,985 !! 2024-01-29T23:36:41,986 self.initialize_options() 2024-01-29T23:36:42,004 installing to build/bdist.linux-armv7l/wheel 2024-01-29T23:36:42,005 running install 2024-01-29T23:36:42,028 running install_lib 2024-01-29T23:36:42,052 creating build/bdist.linux-armv7l 2024-01-29T23:36:42,053 creating build/bdist.linux-armv7l/wheel 2024-01-29T23:36:42,054 creating build/bdist.linux-armv7l/wheel/cas 2024-01-29T23:36:42,056 copying build/lib/cas/spreadsheet_to_cas.py -> build/bdist.linux-armv7l/wheel/cas 2024-01-29T23:36:42,058 creating build/bdist.linux-armv7l/wheel/cas/accession 2024-01-29T23:36:42,059 copying build/lib/cas/accession/base_accession_manager.py -> build/bdist.linux-armv7l/wheel/cas/accession 2024-01-29T23:36:42,061 copying build/lib/cas/accession/__init__.py -> build/bdist.linux-armv7l/wheel/cas/accession 2024-01-29T23:36:42,063 copying build/lib/cas/accession/hash_accession_manager.py -> build/bdist.linux-armv7l/wheel/cas/accession 2024-01-29T23:36:42,065 copying build/lib/cas/accession/incremental_accession_manager.py -> build/bdist.linux-armv7l/wheel/cas/accession 2024-01-29T23:36:42,067 copying build/lib/cas/flatten_data_to_tables.py -> build/bdist.linux-armv7l/wheel/cas 2024-01-29T23:36:42,069 copying build/lib/cas/reports.py -> build/bdist.linux-armv7l/wheel/cas 2024-01-29T23:36:42,071 copying build/lib/cas/__init__.py -> build/bdist.linux-armv7l/wheel/cas 2024-01-29T23:36:42,072 copying build/lib/cas/file_utils.py -> build/bdist.linux-armv7l/wheel/cas 2024-01-29T23:36:42,075 creating build/bdist.linux-armv7l/wheel/cas/ingest 2024-01-29T23:36:42,076 copying build/lib/cas/ingest/__init__.py -> build/bdist.linux-armv7l/wheel/cas/ingest 2024-01-29T23:36:42,078 copying build/lib/cas/ingest/config_schema.yaml -> build/bdist.linux-armv7l/wheel/cas/ingest 2024-01-29T23:36:42,080 copying build/lib/cas/ingest/ingest_user_table.py -> build/bdist.linux-armv7l/wheel/cas/ingest 2024-01-29T23:36:42,082 copying build/lib/cas/ingest/config_validator.py -> build/bdist.linux-armv7l/wheel/cas/ingest 2024-01-29T23:36:42,084 creating build/bdist.linux-armv7l/wheel/cas/matrix_file 2024-01-29T23:36:42,086 copying build/lib/cas/matrix_file/resolver.py -> build/bdist.linux-armv7l/wheel/cas/matrix_file 2024-01-29T23:36:42,088 copying build/lib/cas/matrix_file/base_resolver.py -> build/bdist.linux-armv7l/wheel/cas/matrix_file 2024-01-29T23:36:42,090 copying build/lib/cas/matrix_file/__init__.py -> build/bdist.linux-armv7l/wheel/cas/matrix_file 2024-01-29T23:36:42,092 copying build/lib/cas/matrix_file/cxg_resolver.py -> build/bdist.linux-armv7l/wheel/cas/matrix_file 2024-01-29T23:36:42,094 copying build/lib/cas/populate_cell_ids.py -> build/bdist.linux-armv7l/wheel/cas 2024-01-29T23:36:42,097 copying build/lib/cas/model.py -> build/bdist.linux-armv7l/wheel/cas 2024-01-29T23:36:42,099 copying build/lib/cas/validate.py -> build/bdist.linux-armv7l/wheel/cas 2024-01-29T23:36:42,101 copying build/lib/cas/__main__.py -> build/bdist.linux-armv7l/wheel/cas 2024-01-29T23:36:42,104 copying build/lib/cas/flatten_data_to_anndata.py -> build/bdist.linux-armv7l/wheel/cas 2024-01-29T23:36:42,107 copying build/lib/cas/anndata_conversion.py -> build/bdist.linux-armv7l/wheel/cas 2024-01-29T23:36:42,110 running install_egg_info 2024-01-29T23:36:42,140 Copying src/cas_tools.egg-info to build/bdist.linux-armv7l/wheel/cas_tools-0.0.1.dev16-py3.11.egg-info 2024-01-29T23:36:42,153 running install_scripts 2024-01-29T23:36:42,168 creating build/bdist.linux-armv7l/wheel/cas_tools-0.0.1.dev16.dist-info/WHEEL 2024-01-29T23:36:42,171 creating '/tmp/pip-wheel-e9zcqb8u/cas_tools-0.0.1.dev16-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-01-29T23:36:42,174 adding 'cas/__init__.py' 2024-01-29T23:36:42,176 adding 'cas/__main__.py' 2024-01-29T23:36:42,189 adding 'cas/anndata_conversion.py' 2024-01-29T23:36:42,218 adding 'cas/file_utils.py' 2024-01-29T23:36:42,903 adding 'cas/flatten_data_to_anndata.py' 2024-01-29T23:36:43,685 adding 'cas/flatten_data_to_tables.py' 2024-01-29T23:36:45,570 adding 'cas/model.py' 2024-01-29T23:36:46,925 adding 'cas/populate_cell_ids.py' 2024-01-29T23:36:47,963 adding 'cas/reports.py' 2024-01-29T23:36:48,533 adding 'cas/spreadsheet_to_cas.py' 2024-01-29T23:36:49,160 adding 'cas/validate.py' 2024-01-29T23:36:49,164 adding 'cas/accession/__init__.py' 2024-01-29T23:36:49,167 adding 'cas/accession/base_accession_manager.py' 2024-01-29T23:36:49,170 adding 'cas/accession/hash_accession_manager.py' 2024-01-29T23:36:49,174 adding 'cas/accession/incremental_accession_manager.py' 2024-01-29T23:36:49,179 adding 'cas/ingest/__init__.py' 2024-01-29T23:36:49,182 adding 'cas/ingest/config_schema.yaml' 2024-01-29T23:36:49,186 adding 'cas/ingest/config_validator.py' 2024-01-29T23:36:49,190 adding 'cas/ingest/ingest_user_table.py' 2024-01-29T23:36:49,194 adding 'cas/matrix_file/__init__.py' 2024-01-29T23:36:49,197 adding 'cas/matrix_file/base_resolver.py' 2024-01-29T23:36:49,200 adding 'cas/matrix_file/cxg_resolver.py' 2024-01-29T23:36:49,204 adding 'cas/matrix_file/resolver.py' 2024-01-29T23:36:49,209 adding 'cas_tools-0.0.1.dev16.dist-info/METADATA' 2024-01-29T23:36:49,212 adding 'cas_tools-0.0.1.dev16.dist-info/WHEEL' 2024-01-29T23:36:49,215 adding 'cas_tools-0.0.1.dev16.dist-info/entry_points.txt' 2024-01-29T23:36:49,217 adding 'cas_tools-0.0.1.dev16.dist-info/top_level.txt' 2024-01-29T23:36:49,220 adding 'cas_tools-0.0.1.dev16.dist-info/RECORD' 2024-01-29T23:36:49,226 removing build/bdist.linux-armv7l/wheel 2024-01-29T23:36:49,360 Building wheel for cas-tools (setup.py): finished with status 'done' 2024-01-29T23:36:49,364 Created wheel for cas-tools: filename=cas_tools-0.0.1.dev16-py3-none-any.whl size=29074 sha256=a1a220f3762b867267628b995e6b25e043ab9fe98d1786470cfd20d98b6e4d10 2024-01-29T23:36:49,366 Stored in directory: /tmp/pip-ephem-wheel-cache-ltwdvd3f/wheels/f0/de/c1/e2026cbf5d3491e0f96f9d1f505bd5eda9ca1109d0fa1ff021 2024-01-29T23:36:49,380 Successfully built cas-tools 2024-01-29T23:36:49,386 Removed build tracker: '/tmp/pip-build-tracker-hxb0btic'