2024-01-29T23:38:05,818 Created temporary directory: /tmp/pip-build-tracker-w2duklfh 2024-01-29T23:38:05,819 Initialized build tracking at /tmp/pip-build-tracker-w2duklfh 2024-01-29T23:38:05,819 Created build tracker: /tmp/pip-build-tracker-w2duklfh 2024-01-29T23:38:05,820 Entered build tracker: /tmp/pip-build-tracker-w2duklfh 2024-01-29T23:38:05,821 Created temporary directory: /tmp/pip-wheel-s0dsx4kg 2024-01-29T23:38:05,824 Created temporary directory: /tmp/pip-ephem-wheel-cache-jvi8ky9k 2024-01-29T23:38:05,847 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-29T23:38:05,850 2 location(s) to search for versions of dedalus: 2024-01-29T23:38:05,850 * https://pypi.org/simple/dedalus/ 2024-01-29T23:38:05,850 * https://www.piwheels.org/simple/dedalus/ 2024-01-29T23:38:05,851 Fetching project page and analyzing links: https://pypi.org/simple/dedalus/ 2024-01-29T23:38:05,852 Getting page https://pypi.org/simple/dedalus/ 2024-01-29T23:38:05,853 Found index url https://pypi.org/simple/ 2024-01-29T23:38:06,072 Fetched page https://pypi.org/simple/dedalus/ as application/vnd.pypi.simple.v1+json 2024-01-29T23:38:06,076 Found link https://files.pythonhosted.org/packages/b0/14/0ff5a71edb6b24042c73c2f3f6399d53d5c8774286ffcd28a12bdfc605b9/dedalus-2.1810a1.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1810a1 2024-01-29T23:38:06,077 Found link https://files.pythonhosted.org/packages/e2/ca/5d0d3728868ae9fde3c2e291200fe3a96d2a66aa22119a2da4bd25a64f59/dedalus-2.1810a2.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1810a2 2024-01-29T23:38:06,077 Found link https://files.pythonhosted.org/packages/ec/34/03ef1e989cc8afed1906156481ee53fe4ac305c07147cf41195a31eac965/dedalus-2.1810a3.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1810a3 2024-01-29T23:38:06,078 Found link https://files.pythonhosted.org/packages/ba/bc/fdd40d0bbab4c5d6e98f71e33b52022894daf6b702086c287e98e115419c/dedalus-2.1810.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1810 2024-01-29T23:38:06,079 Found link https://files.pythonhosted.org/packages/7e/b5/b278399c1a9624c6f26665d3c0668e4ebaeff57c3943956b7354f4eae24f/dedalus-2.1905a1.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1905a1 2024-01-29T23:38:06,080 Found link https://files.pythonhosted.org/packages/f1/47/6fd2edd457e8bd73d375758a45633b217a7e6dba8d1c211ecfc86260d5d2/dedalus-2.1905a2.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1905a2 2024-01-29T23:38:06,080 Found link https://files.pythonhosted.org/packages/0e/1a/8b178bbc4c097e5485a841d9f0af8d9009c9d196b3b95afd86b3e889535c/dedalus-2.1905a3.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1905a3 2024-01-29T23:38:06,081 Found link https://files.pythonhosted.org/packages/19/56/7d68f1f71364cc048a4d651cb27db8138916162883bd4134a77424db6a85/dedalus-2.1905.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1905 2024-01-29T23:38:06,082 Found link https://files.pythonhosted.org/packages/47/74/1c69ee6ea00ad17d28fad84693158f43125ca9ab2cba2ff892a45d26e320/dedalus-2.2006a1.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.2006a1 2024-01-29T23:38:06,083 Found link https://files.pythonhosted.org/packages/a9/a9/676aab3727076de1b54a5465834eab64965e6bbc4af780274243554bd082/dedalus-2.2006.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.2006 2024-01-29T23:38:06,083 Found link https://files.pythonhosted.org/packages/bf/c5/7b02ced5397a7e18537d3a4a4c8c002a988e5b00318b290473b98e75e8b3/dedalus-2.2207a1.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.2207a1 2024-01-29T23:38:06,084 Found link https://files.pythonhosted.org/packages/6d/89/0f5b60cfd1d8dbe89f1f7293ee388ceef66f537ee8b5988cb6c7a8d35c6b/dedalus-2.2207.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.2207 2024-01-29T23:38:06,085 Found link https://files.pythonhosted.org/packages/80/c7/dbd9d9e7ea71d7257492d396bf23fd9731ed71fc881a938ac3c62613e490/dedalus-2.2207.1.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.2207.1 2024-01-29T23:38:06,085 Found link https://files.pythonhosted.org/packages/e3/b3/65770bba55872c9bd289ad2f8ee148db12f4ea78e50e17c083926521af98/dedalus-2.2207.2.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.2207.2 2024-01-29T23:38:06,086 Found link https://files.pythonhosted.org/packages/68/e2/2b8db73de77e5a6b42dc737d2f299f67adb2bc2751f6728d8f402d5f34b5/dedalus-2.2207.3.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.2207.3 2024-01-29T23:38:06,087 Found link https://files.pythonhosted.org/packages/af/7b/53327acc5c7d088603509b39a730277df3d4cd14337f8749633d206c21c2/dedalus-3.0.0.tar.gz (from https://pypi.org/simple/dedalus/) (requires-python:>=3.8), version: 3.0.0 2024-01-29T23:38:06,088 Found link https://files.pythonhosted.org/packages/af/52/6186559f1605ae8e0fc98fbd701ff192a05bcaa60c821f9faedd5d7e95d5/dedalus-3.0.1.tar.gz (from https://pypi.org/simple/dedalus/) (requires-python:>=3.8), version: 3.0.1 2024-01-29T23:38:06,089 Found link https://files.pythonhosted.org/packages/3d/ce/324a31fea507abb4e4c5423a2ad547ac25e0e371bbd281fb0bd3811a694f/dedalus-3.0.2.tar.gz (from https://pypi.org/simple/dedalus/) (requires-python:>=3.8), version: 3.0.2 2024-01-29T23:38:06,090 Fetching project page and analyzing links: https://www.piwheels.org/simple/dedalus/ 2024-01-29T23:38:06,090 Getting page https://www.piwheels.org/simple/dedalus/ 2024-01-29T23:38:06,091 Found index url https://www.piwheels.org/simple/ 2024-01-29T23:38:06,244 Fetched page https://www.piwheels.org/simple/dedalus/ as text/html 2024-01-29T23:38:06,245 Skipping link: not a file: https://www.piwheels.org/simple/dedalus/ 2024-01-29T23:38:06,246 Skipping link: not a file: https://pypi.org/simple/dedalus/ 2024-01-29T23:38:06,266 Given no hashes to check 1 links for project 'dedalus': discarding no candidates 2024-01-29T23:38:06,284 Collecting dedalus==3.0.2 2024-01-29T23:38:06,287 Created temporary directory: /tmp/pip-unpack-9o_eos95 2024-01-29T23:38:06,503 Downloading dedalus-3.0.2.tar.gz (245 kB) 2024-01-29T23:38:06,812 Added dedalus==3.0.2 from https://files.pythonhosted.org/packages/3d/ce/324a31fea507abb4e4c5423a2ad547ac25e0e371bbd281fb0bd3811a694f/dedalus-3.0.2.tar.gz to build tracker '/tmp/pip-build-tracker-w2duklfh' 2024-01-29T23:38:06,819 Created temporary directory: /tmp/pip-build-env-hbne2kdo 2024-01-29T23:38:06,824 Installing build dependencies: started 2024-01-29T23:38:06,825 Running command pip subprocess to install build dependencies 2024-01-29T23:38:08,089 Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-01-29T23:38:08,651 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-29T23:38:10,145 Collecting cython>=3.0.5 2024-01-29T23:38:10,177 Using cached https://www.piwheels.org/simple/cython/Cython-3.0.8-cp311-cp311-linux_armv7l.whl (11.7 MB) 2024-01-29T23:38:10,862 Collecting mpi4py>=2.0.0 2024-01-29T23:38:10,885 Using cached https://www.piwheels.org/simple/mpi4py/mpi4py-3.1.5-cp311-cp311-linux_armv7l.whl (2.8 MB) 2024-01-29T23:38:11,617 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2024-01-29T23:38:11,621 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2024-01-29T23:38:11,624 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2024-01-29T23:38:11,628 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2024-01-29T23:38:11,631 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2024-01-29T23:38:11,915 Collecting numpy>=1.20.0 2024-01-29T23:38:11,933 Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.3-cp311-cp311-linux_armv7l.whl (19.5 MB) 2024-01-29T23:38:13,613 Collecting setuptools 2024-01-29T23:38:13,633 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.0.3-py3-none-any.whl (819 kB) 2024-01-29T23:38:13,916 Collecting wheel 2024-01-29T23:38:13,934 Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB) 2024-01-29T23:38:16,553 Installing collected packages: wheel, setuptools, numpy, mpi4py, cython 2024-01-29T23:38:16,786 Creating /tmp/pip-build-env-hbne2kdo/overlay/local/bin 2024-01-29T23:38:16,788 changing mode of /tmp/pip-build-env-hbne2kdo/overlay/local/bin/wheel to 755 2024-01-29T23:38:27,075 changing mode of /tmp/pip-build-env-hbne2kdo/overlay/local/bin/f2py to 755 2024-01-29T23:38:31,091 changing mode of /tmp/pip-build-env-hbne2kdo/overlay/local/bin/cygdb to 755 2024-01-29T23:38:31,095 changing mode of /tmp/pip-build-env-hbne2kdo/overlay/local/bin/cython to 755 2024-01-29T23:38:31,098 changing mode of /tmp/pip-build-env-hbne2kdo/overlay/local/bin/cythonize to 755 2024-01-29T23:38:31,141 Successfully installed cython-3.0.8 mpi4py-3.1.5 numpy-1.26.3 setuptools-69.0.3 wheel-0.42.0 2024-01-29T23:38:31,417 [notice] A new release of pip is available: 23.3.1 -> 23.3.2 2024-01-29T23:38:31,417 [notice] To update, run: python3 -m pip install --upgrade pip 2024-01-29T23:38:31,854 Installing build dependencies: finished with status 'done' 2024-01-29T23:38:31,867 Getting requirements to build wheel: started 2024-01-29T23:38:31,868 Running command Getting requirements to build wheel 2024-01-29T23:38:54,618 Configuration: 2024-01-29T23:38:54,619 INCLUDE_MPI = True 2024-01-29T23:38:54,620 INCLUDE_FFTW = True 2024-01-29T23:38:54,620 FFTW_STATIC = False 2024-01-29T23:38:54,623 CYTHON_PROFILE = False 2024-01-29T23:38:54,624 Looking for mpi include path: 2024-01-29T23:38:54,625 Cannot find MPI_PATH, MPI_PREFIX, or libraries matching mpi. 2024-01-29T23:38:54,626 If mpi isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-29T23:38:54,627 Looking for mpi library path: 2024-01-29T23:38:54,627 Cannot find MPI_PATH, MPI_PREFIX, or libraries matching mpi. 2024-01-29T23:38:54,628 If mpi isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-29T23:38:54,629 Looking for fftw include path: 2024-01-29T23:38:54,629 Cannot find FFTW_PATH, FFTW_PREFIX, or libraries matching fftw. 2024-01-29T23:38:54,630 If fftw isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-29T23:38:54,631 Looking for fftw library path: 2024-01-29T23:38:54,632 Cannot find FFTW_PATH, FFTW_PREFIX, or libraries matching fftw. 2024-01-29T23:38:54,632 If fftw isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-29T23:38:54,634 Compiling dedalus/core/transposes.pyx because it changed. 2024-01-29T23:38:54,635 Compiling dedalus/tools/linalg.pyx because it changed. 2024-01-29T23:38:54,635 Compiling dedalus/libraries/fftw/fftw_wrappers.pyx because it changed. 2024-01-29T23:38:54,636 Compiling dedalus/libraries/spin_recombination.pyx because it changed. 2024-01-29T23:38:54,637 [1/4] Cythonizing dedalus/core/transposes.pyx 2024-01-29T23:38:54,638 [2/4] Cythonizing dedalus/libraries/fftw/fftw_wrappers.pyx 2024-01-29T23:38:54,639 [3/4] Cythonizing dedalus/libraries/spin_recombination.pyx 2024-01-29T23:38:54,664 [4/4] Cythonizing dedalus/tools/linalg.pyx 2024-01-29T23:38:54,807 running egg_info 2024-01-29T23:38:54,822 writing dedalus.egg-info/PKG-INFO 2024-01-29T23:38:54,826 writing dependency_links to dedalus.egg-info/dependency_links.txt 2024-01-29T23:38:54,829 writing entry points to dedalus.egg-info/entry_points.txt 2024-01-29T23:38:54,838 writing requirements to dedalus.egg-info/requires.txt 2024-01-29T23:38:54,839 writing top-level names to dedalus.egg-info/top_level.txt 2024-01-29T23:38:54,961 dependency /tmp/pip-build-env-hbne2kdo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-29T23:38:54,962 dependency /tmp/pip-build-env-hbne2kdo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-01-29T23:38:54,962 dependency /tmp/pip-build-env-hbne2kdo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-29T23:38:54,963 dependency /tmp/pip-build-env-hbne2kdo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-01-29T23:38:54,964 dependency /tmp/pip-build-env-hbne2kdo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-01-29T23:38:54,964 dependency /tmp/pip-build-env-hbne2kdo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-29T23:38:54,965 dependency /tmp/pip-build-env-hbne2kdo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-01-29T23:38:54,965 dependency /tmp/pip-build-env-hbne2kdo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-29T23:38:54,966 dependency /tmp/pip-build-env-hbne2kdo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-01-29T23:38:54,972 dependency /tmp/pip-build-env-hbne2kdo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-01-29T23:38:54,973 dependency /tmp/pip-build-env-hbne2kdo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-29T23:38:54,974 dependency /tmp/pip-build-env-hbne2kdo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-01-29T23:38:54,974 dependency /tmp/pip-build-env-hbne2kdo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-29T23:38:54,975 dependency /tmp/pip-build-env-hbne2kdo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-01-29T23:38:54,975 dependency /tmp/pip-build-env-hbne2kdo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-01-29T23:38:54,976 reading manifest file 'dedalus.egg-info/SOURCES.txt' 2024-01-29T23:38:54,979 reading manifest template 'MANIFEST.in' 2024-01-29T23:38:55,000 adding license file 'LICENSE.txt' 2024-01-29T23:38:55,005 writing manifest file 'dedalus.egg-info/SOURCES.txt' 2024-01-29T23:38:56,259 Getting requirements to build wheel: finished with status 'done' 2024-01-29T23:38:56,271 Created temporary directory: /tmp/pip-modern-metadata-q6xfgqdk 2024-01-29T23:38:56,279 Preparing metadata (pyproject.toml): started 2024-01-29T23:38:56,280 Running command Preparing metadata (pyproject.toml) 2024-01-29T23:38:57,965 Configuration: 2024-01-29T23:38:57,965 INCLUDE_MPI = True 2024-01-29T23:38:57,966 INCLUDE_FFTW = True 2024-01-29T23:38:57,966 FFTW_STATIC = False 2024-01-29T23:38:57,967 CYTHON_PROFILE = False 2024-01-29T23:38:57,968 Looking for mpi include path: 2024-01-29T23:38:57,968 Cannot find MPI_PATH, MPI_PREFIX, or libraries matching mpi. 2024-01-29T23:38:57,969 If mpi isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-29T23:38:57,969 Looking for mpi library path: 2024-01-29T23:38:57,970 Cannot find MPI_PATH, MPI_PREFIX, or libraries matching mpi. 2024-01-29T23:38:57,970 If mpi isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-29T23:38:57,971 Looking for fftw include path: 2024-01-29T23:38:57,971 Cannot find FFTW_PATH, FFTW_PREFIX, or libraries matching fftw. 2024-01-29T23:38:57,971 If fftw isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-29T23:38:57,972 Looking for fftw library path: 2024-01-29T23:38:57,972 Cannot find FFTW_PATH, FFTW_PREFIX, or libraries matching fftw. 2024-01-29T23:38:57,973 If fftw isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-29T23:38:58,015 running dist_info 2024-01-29T23:38:58,034 creating /tmp/pip-modern-metadata-q6xfgqdk/dedalus.egg-info 2024-01-29T23:38:58,040 writing /tmp/pip-modern-metadata-q6xfgqdk/dedalus.egg-info/PKG-INFO 2024-01-29T23:38:58,044 writing dependency_links to /tmp/pip-modern-metadata-q6xfgqdk/dedalus.egg-info/dependency_links.txt 2024-01-29T23:38:58,045 writing entry points to /tmp/pip-modern-metadata-q6xfgqdk/dedalus.egg-info/entry_points.txt 2024-01-29T23:38:58,047 writing requirements to /tmp/pip-modern-metadata-q6xfgqdk/dedalus.egg-info/requires.txt 2024-01-29T23:38:58,048 writing top-level names to /tmp/pip-modern-metadata-q6xfgqdk/dedalus.egg-info/top_level.txt 2024-01-29T23:38:58,049 writing manifest file '/tmp/pip-modern-metadata-q6xfgqdk/dedalus.egg-info/SOURCES.txt' 2024-01-29T23:38:58,088 dependency /tmp/pip-build-env-hbne2kdo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-29T23:38:58,089 dependency /tmp/pip-build-env-hbne2kdo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-01-29T23:38:58,089 dependency /tmp/pip-build-env-hbne2kdo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-29T23:38:58,090 dependency /tmp/pip-build-env-hbne2kdo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-01-29T23:38:58,091 dependency /tmp/pip-build-env-hbne2kdo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-01-29T23:38:58,091 dependency /tmp/pip-build-env-hbne2kdo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-29T23:38:58,092 dependency /tmp/pip-build-env-hbne2kdo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-01-29T23:38:58,092 dependency /tmp/pip-build-env-hbne2kdo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-29T23:38:58,093 dependency /tmp/pip-build-env-hbne2kdo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-01-29T23:38:58,094 dependency /tmp/pip-build-env-hbne2kdo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-01-29T23:38:58,094 dependency /tmp/pip-build-env-hbne2kdo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-29T23:38:58,095 dependency /tmp/pip-build-env-hbne2kdo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-01-29T23:38:58,095 dependency /tmp/pip-build-env-hbne2kdo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-29T23:38:58,096 dependency /tmp/pip-build-env-hbne2kdo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-01-29T23:38:58,096 dependency /tmp/pip-build-env-hbne2kdo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-01-29T23:38:58,098 reading manifest file '/tmp/pip-modern-metadata-q6xfgqdk/dedalus.egg-info/SOURCES.txt' 2024-01-29T23:38:58,100 reading manifest template 'MANIFEST.in' 2024-01-29T23:38:58,113 adding license file 'LICENSE.txt' 2024-01-29T23:38:58,117 writing manifest file '/tmp/pip-modern-metadata-q6xfgqdk/dedalus.egg-info/SOURCES.txt' 2024-01-29T23:38:58,118 creating '/tmp/pip-modern-metadata-q6xfgqdk/dedalus-3.0.2.dist-info' 2024-01-29T23:38:58,381 Preparing metadata (pyproject.toml): finished with status 'done' 2024-01-29T23:38:58,389 Source in /tmp/pip-wheel-s0dsx4kg/dedalus_be854d698002423cb793b7e834435944 has version 3.0.2, which satisfies requirement dedalus==3.0.2 from https://files.pythonhosted.org/packages/3d/ce/324a31fea507abb4e4c5423a2ad547ac25e0e371bbd281fb0bd3811a694f/dedalus-3.0.2.tar.gz 2024-01-29T23:38:58,390 Removed dedalus==3.0.2 from https://files.pythonhosted.org/packages/3d/ce/324a31fea507abb4e4c5423a2ad547ac25e0e371bbd281fb0bd3811a694f/dedalus-3.0.2.tar.gz from build tracker '/tmp/pip-build-tracker-w2duklfh' 2024-01-29T23:38:58,395 Created temporary directory: /tmp/pip-unpack-s90ta9p3 2024-01-29T23:38:58,396 Created temporary directory: /tmp/pip-unpack-eby56dz0 2024-01-29T23:38:58,414 Building wheels for collected packages: dedalus 2024-01-29T23:38:58,418 Created temporary directory: /tmp/pip-wheel-est5ct27 2024-01-29T23:38:58,419 Destination directory: /tmp/pip-wheel-est5ct27 2024-01-29T23:38:58,421 Building wheel for dedalus (pyproject.toml): started 2024-01-29T23:38:58,422 Running command Building wheel for dedalus (pyproject.toml) 2024-01-29T23:38:59,990 Configuration: 2024-01-29T23:38:59,991 INCLUDE_MPI = True 2024-01-29T23:38:59,992 INCLUDE_FFTW = True 2024-01-29T23:38:59,992 FFTW_STATIC = False 2024-01-29T23:38:59,993 CYTHON_PROFILE = False 2024-01-29T23:38:59,994 Looking for mpi include path: 2024-01-29T23:38:59,994 Cannot find MPI_PATH, MPI_PREFIX, or libraries matching mpi. 2024-01-29T23:38:59,995 If mpi isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-29T23:38:59,996 Looking for mpi library path: 2024-01-29T23:38:59,996 Cannot find MPI_PATH, MPI_PREFIX, or libraries matching mpi. 2024-01-29T23:38:59,997 If mpi isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-29T23:38:59,997 Looking for fftw include path: 2024-01-29T23:38:59,998 Cannot find FFTW_PATH, FFTW_PREFIX, or libraries matching fftw. 2024-01-29T23:38:59,999 If fftw isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-29T23:39:00,000 Looking for fftw library path: 2024-01-29T23:39:00,000 Cannot find FFTW_PATH, FFTW_PREFIX, or libraries matching fftw. 2024-01-29T23:39:00,001 If fftw isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-29T23:39:00,082 running bdist_wheel 2024-01-29T23:39:00,128 running build 2024-01-29T23:39:00,130 running build_py 2024-01-29T23:39:00,142 creating build 2024-01-29T23:39:00,143 creating build/lib.linux-armv7l-cpython-311 2024-01-29T23:39:00,143 creating build/lib.linux-armv7l-cpython-311/dedalus 2024-01-29T23:39:00,144 copying dedalus/__main__.py -> build/lib.linux-armv7l-cpython-311/dedalus 2024-01-29T23:39:00,146 copying dedalus/public.py -> build/lib.linux-armv7l-cpython-311/dedalus 2024-01-29T23:39:00,148 copying dedalus/__init__.py -> build/lib.linux-armv7l-cpython-311/dedalus 2024-01-29T23:39:00,150 creating build/lib.linux-armv7l-cpython-311/dedalus/extras 2024-01-29T23:39:00,151 copying dedalus/extras/plot_tools.py -> build/lib.linux-armv7l-cpython-311/dedalus/extras 2024-01-29T23:39:00,154 copying dedalus/extras/__init__.py -> build/lib.linux-armv7l-cpython-311/dedalus/extras 2024-01-29T23:39:00,155 copying dedalus/extras/flow_tools.py -> build/lib.linux-armv7l-cpython-311/dedalus/extras 2024-01-29T23:39:00,158 creating build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-29T23:39:00,159 copying dedalus/core/distributor.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-29T23:39:00,162 copying dedalus/core/solvers.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-29T23:39:00,165 copying dedalus/core/future.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-29T23:39:00,167 copying dedalus/core/arithmetic.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-29T23:39:00,171 copying dedalus/core/system.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-29T23:39:00,173 copying dedalus/core/transforms.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-29T23:39:00,177 copying dedalus/core/domain.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-29T23:39:00,179 copying dedalus/core/timesteppers.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-29T23:39:00,182 copying dedalus/core/operators.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-29T23:39:00,187 copying dedalus/core/basis.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-29T23:39:00,195 copying dedalus/core/problems.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-29T23:39:00,198 copying dedalus/core/field.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-29T23:39:00,201 copying dedalus/core/coords.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-29T23:39:00,203 copying dedalus/core/__init__.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-29T23:39:00,205 copying dedalus/core/subsystems.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-29T23:39:00,208 copying dedalus/core/evaluator.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-29T23:39:00,213 creating build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-29T23:39:00,214 copying dedalus/tests/test_spherical_arithmetic.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-29T23:39:00,217 copying dedalus/tests/test_fourier_operators.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-29T23:39:00,219 copying dedalus/tests/test_transforms.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-29T23:39:00,222 copying dedalus/tests/ball_diffusion_analytical_eigenvalues.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-29T23:39:00,224 copying dedalus/tests/test_cartesian_operators.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-29T23:39:00,227 copying dedalus/tests/test_clenshaw.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-29T23:39:00,230 copying dedalus/tests/test_sphere_calculus.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-29T23:39:00,233 copying dedalus/tests/test_jacobi_operators.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-29T23:39:00,235 copying dedalus/tests/test_polar_calculus.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-29T23:39:00,238 copying dedalus/tests/test_spherical_operators.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-29T23:39:00,241 copying dedalus/tests/test_polar_ncc.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-29T23:39:00,244 copying dedalus/tests/test_cartesian_ncc.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-29T23:39:00,246 copying dedalus/tests/test_cylinder_calculus.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-29T23:39:00,249 copying dedalus/tests/test_cylinder_ncc.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-29T23:39:00,251 copying dedalus/tests/test_sphere_ncc.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-29T23:39:00,254 copying dedalus/tests/test_ivp.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-29T23:39:00,256 copying dedalus/tests/test_polar_operators.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-29T23:39:00,259 copying dedalus/tests/test_grid_operators.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-29T23:39:00,262 copying dedalus/tests/test_cylinder_operators.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-29T23:39:00,264 copying dedalus/tests/test_spherical_calculus.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-29T23:39:00,267 copying dedalus/tests/test_spherical_ncc.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-29T23:39:00,269 copying dedalus/tests/test_lbvp.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-29T23:39:00,272 copying dedalus/tests/test_evp.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-29T23:39:00,275 copying dedalus/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-29T23:39:00,276 copying dedalus/tests/test_nlbvp.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-29T23:39:00,280 copying dedalus/tests/test_output.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-29T23:39:00,282 copying dedalus/tests/test_cfl.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-29T23:39:00,286 creating build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-29T23:39:00,287 copying dedalus/tools/array.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-29T23:39:00,290 copying dedalus/tools/general.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-29T23:39:00,292 copying dedalus/tools/config.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-29T23:39:00,294 copying dedalus/tools/jacobi.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-29T23:39:00,296 copying dedalus/tools/dispatch.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-29T23:39:00,298 copying dedalus/tools/cache.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-29T23:39:00,300 copying dedalus/tools/parsing.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-29T23:39:00,302 copying dedalus/tools/exceptions.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-29T23:39:00,304 copying dedalus/tools/progress.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-29T23:39:00,306 copying dedalus/tools/parallel.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-29T23:39:00,308 copying dedalus/tools/clenshaw.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-29T23:39:00,310 copying dedalus/tools/post.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-29T23:39:00,312 copying dedalus/tools/random_arrays.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-29T23:39:00,315 copying dedalus/tools/logging.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-29T23:39:00,316 copying dedalus/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-29T23:39:00,318 copying dedalus/tools/plot_op.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-29T23:39:00,320 creating build/lib.linux-armv7l-cpython-311/dedalus/libraries 2024-01-29T23:39:00,321 copying dedalus/libraries/matsolvers.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries 2024-01-29T23:39:00,324 copying dedalus/libraries/__init__.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries 2024-01-29T23:39:00,326 creating build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-29T23:39:00,327 copying dedalus/libraries/dedalus_sphere/ball_wrapper.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-29T23:39:00,329 copying dedalus/libraries/dedalus_sphere/sphere.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-29T23:39:00,332 copying dedalus/libraries/dedalus_sphere/tuple_tools.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-29T23:39:00,333 copying dedalus/libraries/dedalus_sphere/jacobi.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-29T23:39:00,336 copying dedalus/libraries/dedalus_sphere/timesteppers.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-29T23:39:00,338 copying dedalus/libraries/dedalus_sphere/operators.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-29T23:39:00,340 copying dedalus/libraries/dedalus_sphere/spin_operators.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-29T23:39:00,342 copying dedalus/libraries/dedalus_sphere/zernike.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-29T23:39:00,344 copying dedalus/libraries/dedalus_sphere/clenshaw.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-29T23:39:00,346 copying dedalus/libraries/dedalus_sphere/sphere_wrapper.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-29T23:39:00,348 copying dedalus/libraries/dedalus_sphere/annulus.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-29T23:39:00,350 copying dedalus/libraries/dedalus_sphere/__init__.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-29T23:39:00,352 copying dedalus/libraries/dedalus_sphere/shell.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-29T23:39:00,354 copying dedalus/libraries/dedalus_sphere/old_intertwiner.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-29T23:39:00,356 creating build/lib.linux-armv7l-cpython-311/dedalus/libraries/fftw 2024-01-29T23:39:00,357 copying dedalus/libraries/fftw/__init__.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/fftw 2024-01-29T23:39:00,363 copying dedalus/dedalus.cfg -> build/lib.linux-armv7l-cpython-311/dedalus 2024-01-29T23:39:00,366 copying dedalus/examples.tar.gz -> build/lib.linux-armv7l-cpython-311/dedalus 2024-01-29T23:39:00,373 running build_ext 2024-01-29T23:39:00,379 building 'dedalus.core.transposes' extension 2024-01-29T23:39:00,380 creating build/temp.linux-armv7l-cpython-311 2024-01-29T23:39:00,380 creating build/temp.linux-armv7l-cpython-311/dedalus 2024-01-29T23:39:00,381 creating build/temp.linux-armv7l-cpython-311/dedalus/core 2024-01-29T23:39:00,382 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-hbne2kdo/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/tmp/pip-build-env-hbne2kdo/overlay/local/lib/python3.11/dist-packages/mpi4py/include -Idedalus/libraries/fftw/ -I/usr/include/python3.11 -c dedalus/core/transposes.c -o build/temp.linux-armv7l-cpython-311/dedalus/core/transposes.o -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -Wno-unused-function -fopenmp 2024-01-29T23:39:00,870 dedalus/core/transposes.c:1235:10: fatal error: mpi.h: No such file or directory 2024-01-29T23:39:00,871 1235 | #include "mpi.h" 2024-01-29T23:39:00,872 | ^~~~~~~ 2024-01-29T23:39:00,872 compilation terminated. 2024-01-29T23:39:00,878 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2024-01-29T23:39:01,049 ERROR: Building wheel for dedalus (pyproject.toml) exited with 1 2024-01-29T23:39:01,062 [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/local/lib/python3.11/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmp4abe5m10[/] 2024-01-29T23:39:01,063 [bold magenta]cwd[/]: /tmp/pip-wheel-s0dsx4kg/dedalus_be854d698002423cb793b7e834435944 2024-01-29T23:39:01,063 Building wheel for dedalus (pyproject.toml): finished with status 'error' 2024-01-29T23:39:01,065 ERROR: Failed building wheel for dedalus 2024-01-29T23:39:01,068 Failed to build dedalus 2024-01-29T23:39:01,069 ERROR: Failed to build one or more wheels 2024-01-29T23:39:01,070 Exception information: 2024-01-29T23:39:01,070 Traceback (most recent call last): 2024-01-29T23:39:01,070 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2024-01-29T23:39:01,070 status = run_func(*args) 2024-01-29T23:39:01,070 ^^^^^^^^^^^^^^^ 2024-01-29T23:39:01,070 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 245, in wrapper 2024-01-29T23:39:01,070 return func(self, options, args) 2024-01-29T23:39:01,070 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-01-29T23:39:01,070 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run 2024-01-29T23:39:01,070 raise CommandError("Failed to build one or more wheels") 2024-01-29T23:39:01,070 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2024-01-29T23:39:01,074 Removed build tracker: '/tmp/pip-build-tracker-w2duklfh'