2024-01-30T01:41:25,144 Created temporary directory: /tmp/pip-build-tracker-gc8ye2hk 2024-01-30T01:41:25,145 Initialized build tracking at /tmp/pip-build-tracker-gc8ye2hk 2024-01-30T01:41:25,145 Created build tracker: /tmp/pip-build-tracker-gc8ye2hk 2024-01-30T01:41:25,146 Entered build tracker: /tmp/pip-build-tracker-gc8ye2hk 2024-01-30T01:41:25,146 Created temporary directory: /tmp/pip-wheel-j5xp2nrx 2024-01-30T01:41:25,150 Created temporary directory: /tmp/pip-ephem-wheel-cache-75yahzln 2024-01-30T01:41:25,174 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-30T01:41:25,177 2 location(s) to search for versions of dedalus: 2024-01-30T01:41:25,177 * https://pypi.org/simple/dedalus/ 2024-01-30T01:41:25,177 * https://www.piwheels.org/simple/dedalus/ 2024-01-30T01:41:25,178 Fetching project page and analyzing links: https://pypi.org/simple/dedalus/ 2024-01-30T01:41:25,178 Getting page https://pypi.org/simple/dedalus/ 2024-01-30T01:41:25,180 Found index url https://pypi.org/simple/ 2024-01-30T01:41:25,234 Fetched page https://pypi.org/simple/dedalus/ as application/vnd.pypi.simple.v1+json 2024-01-30T01:41:25,238 Found link https://files.pythonhosted.org/packages/b0/14/0ff5a71edb6b24042c73c2f3f6399d53d5c8774286ffcd28a12bdfc605b9/dedalus-2.1810a1.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1810a1 2024-01-30T01:41:25,239 Found link https://files.pythonhosted.org/packages/e2/ca/5d0d3728868ae9fde3c2e291200fe3a96d2a66aa22119a2da4bd25a64f59/dedalus-2.1810a2.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1810a2 2024-01-30T01:41:25,239 Found link https://files.pythonhosted.org/packages/ec/34/03ef1e989cc8afed1906156481ee53fe4ac305c07147cf41195a31eac965/dedalus-2.1810a3.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1810a3 2024-01-30T01:41:25,239 Found link https://files.pythonhosted.org/packages/ba/bc/fdd40d0bbab4c5d6e98f71e33b52022894daf6b702086c287e98e115419c/dedalus-2.1810.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1810 2024-01-30T01:41:25,240 Found link https://files.pythonhosted.org/packages/7e/b5/b278399c1a9624c6f26665d3c0668e4ebaeff57c3943956b7354f4eae24f/dedalus-2.1905a1.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1905a1 2024-01-30T01:41:25,240 Found link https://files.pythonhosted.org/packages/f1/47/6fd2edd457e8bd73d375758a45633b217a7e6dba8d1c211ecfc86260d5d2/dedalus-2.1905a2.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1905a2 2024-01-30T01:41:25,240 Found link https://files.pythonhosted.org/packages/0e/1a/8b178bbc4c097e5485a841d9f0af8d9009c9d196b3b95afd86b3e889535c/dedalus-2.1905a3.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1905a3 2024-01-30T01:41:25,240 Found link https://files.pythonhosted.org/packages/19/56/7d68f1f71364cc048a4d651cb27db8138916162883bd4134a77424db6a85/dedalus-2.1905.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1905 2024-01-30T01:41:25,241 Found link https://files.pythonhosted.org/packages/47/74/1c69ee6ea00ad17d28fad84693158f43125ca9ab2cba2ff892a45d26e320/dedalus-2.2006a1.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.2006a1 2024-01-30T01:41:25,241 Found link https://files.pythonhosted.org/packages/a9/a9/676aab3727076de1b54a5465834eab64965e6bbc4af780274243554bd082/dedalus-2.2006.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.2006 2024-01-30T01:41:25,242 Found link https://files.pythonhosted.org/packages/bf/c5/7b02ced5397a7e18537d3a4a4c8c002a988e5b00318b290473b98e75e8b3/dedalus-2.2207a1.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.2207a1 2024-01-30T01:41:25,242 Found link https://files.pythonhosted.org/packages/6d/89/0f5b60cfd1d8dbe89f1f7293ee388ceef66f537ee8b5988cb6c7a8d35c6b/dedalus-2.2207.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.2207 2024-01-30T01:41:25,242 Found link https://files.pythonhosted.org/packages/80/c7/dbd9d9e7ea71d7257492d396bf23fd9731ed71fc881a938ac3c62613e490/dedalus-2.2207.1.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.2207.1 2024-01-30T01:41:25,242 Found link https://files.pythonhosted.org/packages/e3/b3/65770bba55872c9bd289ad2f8ee148db12f4ea78e50e17c083926521af98/dedalus-2.2207.2.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.2207.2 2024-01-30T01:41:25,243 Found link https://files.pythonhosted.org/packages/68/e2/2b8db73de77e5a6b42dc737d2f299f67adb2bc2751f6728d8f402d5f34b5/dedalus-2.2207.3.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.2207.3 2024-01-30T01:41:25,243 Found link https://files.pythonhosted.org/packages/af/7b/53327acc5c7d088603509b39a730277df3d4cd14337f8749633d206c21c2/dedalus-3.0.0.tar.gz (from https://pypi.org/simple/dedalus/) (requires-python:>=3.8), version: 3.0.0 2024-01-30T01:41:25,244 Found link https://files.pythonhosted.org/packages/af/52/6186559f1605ae8e0fc98fbd701ff192a05bcaa60c821f9faedd5d7e95d5/dedalus-3.0.1.tar.gz (from https://pypi.org/simple/dedalus/) (requires-python:>=3.8), version: 3.0.1 2024-01-30T01:41:25,244 Found link https://files.pythonhosted.org/packages/3d/ce/324a31fea507abb4e4c5423a2ad547ac25e0e371bbd281fb0bd3811a694f/dedalus-3.0.2.tar.gz (from https://pypi.org/simple/dedalus/) (requires-python:>=3.8), version: 3.0.2 2024-01-30T01:41:25,245 Fetching project page and analyzing links: https://www.piwheels.org/simple/dedalus/ 2024-01-30T01:41:25,245 Getting page https://www.piwheels.org/simple/dedalus/ 2024-01-30T01:41:25,246 Found index url https://www.piwheels.org/simple/ 2024-01-30T01:41:25,311 Fetched page https://www.piwheels.org/simple/dedalus/ as text/html 2024-01-30T01:41:25,312 Skipping link: not a file: https://www.piwheels.org/simple/dedalus/ 2024-01-30T01:41:25,312 Skipping link: not a file: https://pypi.org/simple/dedalus/ 2024-01-30T01:41:25,331 Given no hashes to check 1 links for project 'dedalus': discarding no candidates 2024-01-30T01:41:25,348 Collecting dedalus==3.0.2 2024-01-30T01:41:25,350 Created temporary directory: /tmp/pip-unpack-d9fsnszi 2024-01-30T01:41:25,394 Downloading dedalus-3.0.2.tar.gz (245 kB) 2024-01-30T01:41:25,677 Added dedalus==3.0.2 from https://files.pythonhosted.org/packages/3d/ce/324a31fea507abb4e4c5423a2ad547ac25e0e371bbd281fb0bd3811a694f/dedalus-3.0.2.tar.gz to build tracker '/tmp/pip-build-tracker-gc8ye2hk' 2024-01-30T01:41:25,684 Created temporary directory: /tmp/pip-build-env-rmsm9o90 2024-01-30T01:41:25,694 Installing build dependencies: started 2024-01-30T01:41:25,695 Running command pip subprocess to install build dependencies 2024-01-30T01:41:26,877 Using pip 23.3.1 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9) 2024-01-30T01:41:27,401 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-30T01:41:28,785 Collecting cython>=3.0.5 2024-01-30T01:41:28,786 Obtaining dependency information for cython>=3.0.5 from https://files.pythonhosted.org/packages/e3/7f/f584f5d15323feb897d42ef0e9d910649e2150d7a30cf7e7a8cc1d236e6f/Cython-3.0.8-py2.py3-none-any.whl.metadata 2024-01-30T01:41:28,802 Using cached Cython-3.0.8-py2.py3-none-any.whl.metadata (3.2 kB) 2024-01-30T01:41:29,038 Collecting mpi4py>=2.0.0 2024-01-30T01:41:29,067 Using cached https://www.piwheels.org/simple/mpi4py/mpi4py-3.1.5-cp39-cp39-linux_armv7l.whl (2.9 MB) 2024-01-30T01:41:30,210 Collecting numpy>=1.20.0 2024-01-30T01:41:30,229 Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.3-cp39-cp39-linux_armv7l.whl (19.4 MB) 2024-01-30T01:41:32,122 Collecting setuptools 2024-01-30T01:41:32,138 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.0.3-py3-none-any.whl (819 kB) 2024-01-30T01:41:32,388 Collecting wheel 2024-01-30T01:41:32,415 Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB) 2024-01-30T01:41:32,636 Using cached Cython-3.0.8-py2.py3-none-any.whl (1.2 MB) 2024-01-30T01:41:34,247 Installing collected packages: wheel, setuptools, numpy, mpi4py, cython 2024-01-30T01:41:34,477 Creating /tmp/pip-build-env-rmsm9o90/overlay/bin 2024-01-30T01:41:34,479 changing mode of /tmp/pip-build-env-rmsm9o90/overlay/bin/wheel to 755 2024-01-30T01:41:45,467 changing mode of /tmp/pip-build-env-rmsm9o90/overlay/bin/f2py to 755 2024-01-30T01:41:48,624 changing mode of /tmp/pip-build-env-rmsm9o90/overlay/bin/cygdb to 755 2024-01-30T01:41:48,626 changing mode of /tmp/pip-build-env-rmsm9o90/overlay/bin/cython to 755 2024-01-30T01:41:48,628 changing mode of /tmp/pip-build-env-rmsm9o90/overlay/bin/cythonize to 755 2024-01-30T01:41:48,653 ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. 2024-01-30T01:41:48,653 scipy 1.8.1 requires numpy<1.25.0,>=1.17.3, but you have numpy 1.26.3 which is incompatible. 2024-01-30T01:41:48,654 Successfully installed cython-3.0.8 mpi4py-3.1.5 numpy-1.26.3 setuptools-69.0.3 wheel-0.42.0 2024-01-30T01:41:48,841 [notice] A new release of pip is available: 23.3.1 -> 23.3.2 2024-01-30T01:41:48,841 [notice] To update, run: python3 -m pip install --upgrade pip 2024-01-30T01:41:49,267 Installing build dependencies: finished with status 'done' 2024-01-30T01:41:49,278 Getting requirements to build wheel: started 2024-01-30T01:41:49,279 Running command Getting requirements to build wheel 2024-01-30T01:42:27,701 Configuration: 2024-01-30T01:42:27,701 INCLUDE_MPI = True 2024-01-30T01:42:27,702 INCLUDE_FFTW = True 2024-01-30T01:42:27,702 FFTW_STATIC = False 2024-01-30T01:42:27,702 CYTHON_PROFILE = False 2024-01-30T01:42:27,702 Looking for mpi include path: 2024-01-30T01:42:27,703 Cannot find MPI_PATH, MPI_PREFIX, or libraries matching mpi. 2024-01-30T01:42:27,703 If mpi isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-30T01:42:27,703 Looking for mpi library path: 2024-01-30T01:42:27,703 Cannot find MPI_PATH, MPI_PREFIX, or libraries matching mpi. 2024-01-30T01:42:27,703 If mpi isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-30T01:42:27,703 Looking for fftw include path: 2024-01-30T01:42:27,703 Cannot find FFTW_PATH, FFTW_PREFIX, or libraries matching fftw. 2024-01-30T01:42:27,704 If fftw isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-30T01:42:27,704 Looking for fftw library path: 2024-01-30T01:42:27,704 Cannot find FFTW_PATH, FFTW_PREFIX, or libraries matching fftw. 2024-01-30T01:42:27,704 If fftw isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-30T01:42:27,704 Compiling dedalus/core/transposes.pyx because it changed. 2024-01-30T01:42:27,705 Compiling dedalus/tools/linalg.pyx because it changed. 2024-01-30T01:42:27,705 Compiling dedalus/libraries/fftw/fftw_wrappers.pyx because it changed. 2024-01-30T01:42:27,705 Compiling dedalus/libraries/spin_recombination.pyx because it changed. 2024-01-30T01:42:27,705 [1/4] Cythonizing dedalus/core/transposes.pyx 2024-01-30T01:42:27,705 [2/4] Cythonizing dedalus/libraries/fftw/fftw_wrappers.pyx 2024-01-30T01:42:27,705 [3/4] Cythonizing dedalus/libraries/spin_recombination.pyx 2024-01-30T01:42:27,706 [4/4] Cythonizing dedalus/tools/linalg.pyx 2024-01-30T01:42:27,788 running egg_info 2024-01-30T01:42:27,794 writing dedalus.egg-info/PKG-INFO 2024-01-30T01:42:27,798 writing dependency_links to dedalus.egg-info/dependency_links.txt 2024-01-30T01:42:27,800 writing entry points to dedalus.egg-info/entry_points.txt 2024-01-30T01:42:27,801 writing requirements to dedalus.egg-info/requires.txt 2024-01-30T01:42:27,802 writing top-level names to dedalus.egg-info/top_level.txt 2024-01-30T01:42:27,862 dependency /tmp/pip-build-env-rmsm9o90/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-30T01:42:27,862 dependency /tmp/pip-build-env-rmsm9o90/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-01-30T01:42:27,862 dependency /tmp/pip-build-env-rmsm9o90/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-30T01:42:27,862 dependency /tmp/pip-build-env-rmsm9o90/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-01-30T01:42:27,862 dependency /tmp/pip-build-env-rmsm9o90/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-01-30T01:42:27,863 dependency /tmp/pip-build-env-rmsm9o90/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-30T01:42:27,863 dependency /tmp/pip-build-env-rmsm9o90/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-01-30T01:42:27,863 dependency /tmp/pip-build-env-rmsm9o90/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-30T01:42:27,863 dependency /tmp/pip-build-env-rmsm9o90/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-01-30T01:42:27,863 dependency /tmp/pip-build-env-rmsm9o90/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-01-30T01:42:27,863 dependency /tmp/pip-build-env-rmsm9o90/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-30T01:42:27,863 dependency /tmp/pip-build-env-rmsm9o90/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-01-30T01:42:27,863 dependency /tmp/pip-build-env-rmsm9o90/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-30T01:42:27,864 dependency /tmp/pip-build-env-rmsm9o90/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-01-30T01:42:27,864 dependency /tmp/pip-build-env-rmsm9o90/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-01-30T01:42:27,869 reading manifest file 'dedalus.egg-info/SOURCES.txt' 2024-01-30T01:42:27,873 reading manifest template 'MANIFEST.in' 2024-01-30T01:42:27,889 adding license file 'LICENSE.txt' 2024-01-30T01:42:27,895 writing manifest file 'dedalus.egg-info/SOURCES.txt' 2024-01-30T01:42:29,172 Getting requirements to build wheel: finished with status 'done' 2024-01-30T01:42:29,181 Created temporary directory: /tmp/pip-modern-metadata-n88kn1vv 2024-01-30T01:42:29,184 Preparing metadata (pyproject.toml): started 2024-01-30T01:42:29,185 Running command Preparing metadata (pyproject.toml) 2024-01-30T01:42:30,894 Configuration: 2024-01-30T01:42:30,894 INCLUDE_MPI = True 2024-01-30T01:42:30,895 INCLUDE_FFTW = True 2024-01-30T01:42:30,895 FFTW_STATIC = False 2024-01-30T01:42:30,895 CYTHON_PROFILE = False 2024-01-30T01:42:30,895 Looking for mpi include path: 2024-01-30T01:42:30,895 Cannot find MPI_PATH, MPI_PREFIX, or libraries matching mpi. 2024-01-30T01:42:30,895 If mpi isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-30T01:42:30,896 Looking for mpi library path: 2024-01-30T01:42:30,896 Cannot find MPI_PATH, MPI_PREFIX, or libraries matching mpi. 2024-01-30T01:42:30,896 If mpi isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-30T01:42:30,896 Looking for fftw include path: 2024-01-30T01:42:30,896 Cannot find FFTW_PATH, FFTW_PREFIX, or libraries matching fftw. 2024-01-30T01:42:30,896 If fftw isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-30T01:42:30,897 Looking for fftw library path: 2024-01-30T01:42:30,897 Cannot find FFTW_PATH, FFTW_PREFIX, or libraries matching fftw. 2024-01-30T01:42:30,897 If fftw isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-30T01:42:30,947 running dist_info 2024-01-30T01:42:30,967 creating /tmp/pip-modern-metadata-n88kn1vv/dedalus.egg-info 2024-01-30T01:42:30,973 writing /tmp/pip-modern-metadata-n88kn1vv/dedalus.egg-info/PKG-INFO 2024-01-30T01:42:30,976 writing dependency_links to /tmp/pip-modern-metadata-n88kn1vv/dedalus.egg-info/dependency_links.txt 2024-01-30T01:42:30,978 writing entry points to /tmp/pip-modern-metadata-n88kn1vv/dedalus.egg-info/entry_points.txt 2024-01-30T01:42:30,979 writing requirements to /tmp/pip-modern-metadata-n88kn1vv/dedalus.egg-info/requires.txt 2024-01-30T01:42:30,980 writing top-level names to /tmp/pip-modern-metadata-n88kn1vv/dedalus.egg-info/top_level.txt 2024-01-30T01:42:30,981 writing manifest file '/tmp/pip-modern-metadata-n88kn1vv/dedalus.egg-info/SOURCES.txt' 2024-01-30T01:42:31,024 dependency /tmp/pip-build-env-rmsm9o90/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-30T01:42:31,025 dependency /tmp/pip-build-env-rmsm9o90/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-01-30T01:42:31,025 dependency /tmp/pip-build-env-rmsm9o90/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-30T01:42:31,025 dependency /tmp/pip-build-env-rmsm9o90/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-01-30T01:42:31,025 dependency /tmp/pip-build-env-rmsm9o90/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-01-30T01:42:31,025 dependency /tmp/pip-build-env-rmsm9o90/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-30T01:42:31,025 dependency /tmp/pip-build-env-rmsm9o90/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-01-30T01:42:31,025 dependency /tmp/pip-build-env-rmsm9o90/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-30T01:42:31,026 dependency /tmp/pip-build-env-rmsm9o90/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-01-30T01:42:31,026 dependency /tmp/pip-build-env-rmsm9o90/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-01-30T01:42:31,026 dependency /tmp/pip-build-env-rmsm9o90/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-30T01:42:31,026 dependency /tmp/pip-build-env-rmsm9o90/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-01-30T01:42:31,026 dependency /tmp/pip-build-env-rmsm9o90/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-30T01:42:31,026 dependency /tmp/pip-build-env-rmsm9o90/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-01-30T01:42:31,026 dependency /tmp/pip-build-env-rmsm9o90/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-01-30T01:42:31,032 reading manifest file '/tmp/pip-modern-metadata-n88kn1vv/dedalus.egg-info/SOURCES.txt' 2024-01-30T01:42:31,034 reading manifest template 'MANIFEST.in' 2024-01-30T01:42:31,049 adding license file 'LICENSE.txt' 2024-01-30T01:42:31,054 writing manifest file '/tmp/pip-modern-metadata-n88kn1vv/dedalus.egg-info/SOURCES.txt' 2024-01-30T01:42:31,055 creating '/tmp/pip-modern-metadata-n88kn1vv/dedalus-3.0.2.dist-info' 2024-01-30T01:42:31,287 Preparing metadata (pyproject.toml): finished with status 'done' 2024-01-30T01:42:31,294 Source in /tmp/pip-wheel-j5xp2nrx/dedalus_1dabf6297c0d4f11bcc87647aae32d59 has version 3.0.2, which satisfies requirement dedalus==3.0.2 from https://files.pythonhosted.org/packages/3d/ce/324a31fea507abb4e4c5423a2ad547ac25e0e371bbd281fb0bd3811a694f/dedalus-3.0.2.tar.gz 2024-01-30T01:42:31,295 Removed dedalus==3.0.2 from https://files.pythonhosted.org/packages/3d/ce/324a31fea507abb4e4c5423a2ad547ac25e0e371bbd281fb0bd3811a694f/dedalus-3.0.2.tar.gz from build tracker '/tmp/pip-build-tracker-gc8ye2hk' 2024-01-30T01:42:31,301 Created temporary directory: /tmp/pip-unpack-qdhhkmnm 2024-01-30T01:42:31,302 Created temporary directory: /tmp/pip-unpack-8tbw85s2 2024-01-30T01:42:31,320 Building wheels for collected packages: dedalus 2024-01-30T01:42:31,324 Created temporary directory: /tmp/pip-wheel-u6dlu3io 2024-01-30T01:42:31,324 Destination directory: /tmp/pip-wheel-u6dlu3io 2024-01-30T01:42:31,326 Building wheel for dedalus (pyproject.toml): started 2024-01-30T01:42:31,327 Running command Building wheel for dedalus (pyproject.toml) 2024-01-30T01:42:32,938 Configuration: 2024-01-30T01:42:32,938 INCLUDE_MPI = True 2024-01-30T01:42:32,938 INCLUDE_FFTW = True 2024-01-30T01:42:32,938 FFTW_STATIC = False 2024-01-30T01:42:32,938 CYTHON_PROFILE = False 2024-01-30T01:42:32,939 Looking for mpi include path: 2024-01-30T01:42:32,939 Cannot find MPI_PATH, MPI_PREFIX, or libraries matching mpi. 2024-01-30T01:42:32,939 If mpi isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-30T01:42:32,939 Looking for mpi library path: 2024-01-30T01:42:32,939 Cannot find MPI_PATH, MPI_PREFIX, or libraries matching mpi. 2024-01-30T01:42:32,939 If mpi isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-30T01:42:32,940 Looking for fftw include path: 2024-01-30T01:42:32,940 Cannot find FFTW_PATH, FFTW_PREFIX, or libraries matching fftw. 2024-01-30T01:42:32,940 If fftw isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-30T01:42:32,940 Looking for fftw library path: 2024-01-30T01:42:32,940 Cannot find FFTW_PATH, FFTW_PREFIX, or libraries matching fftw. 2024-01-30T01:42:32,940 If fftw isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-30T01:42:33,031 running bdist_wheel 2024-01-30T01:42:33,079 running build 2024-01-30T01:42:33,090 running build_py 2024-01-30T01:42:33,099 creating build 2024-01-30T01:42:33,099 creating build/lib.linux-armv7l-cpython-39 2024-01-30T01:42:33,100 creating build/lib.linux-armv7l-cpython-39/dedalus 2024-01-30T01:42:33,101 copying dedalus/__main__.py -> build/lib.linux-armv7l-cpython-39/dedalus 2024-01-30T01:42:33,103 copying dedalus/__init__.py -> build/lib.linux-armv7l-cpython-39/dedalus 2024-01-30T01:42:33,104 copying dedalus/public.py -> build/lib.linux-armv7l-cpython-39/dedalus 2024-01-30T01:42:33,106 creating build/lib.linux-armv7l-cpython-39/dedalus/libraries 2024-01-30T01:42:33,107 copying dedalus/libraries/__init__.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries 2024-01-30T01:42:33,108 copying dedalus/libraries/matsolvers.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries 2024-01-30T01:42:33,112 creating build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-30T01:42:33,113 copying dedalus/core/distributor.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-30T01:42:33,115 copying dedalus/core/future.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-30T01:42:33,117 copying dedalus/core/problems.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-30T01:42:33,120 copying dedalus/core/basis.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-30T01:42:33,127 copying dedalus/core/__init__.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-30T01:42:33,129 copying dedalus/core/system.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-30T01:42:33,131 copying dedalus/core/transforms.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-30T01:42:33,135 copying dedalus/core/field.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-30T01:42:33,137 copying dedalus/core/timesteppers.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-30T01:42:33,140 copying dedalus/core/arithmetic.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-30T01:42:33,143 copying dedalus/core/subsystems.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-30T01:42:33,145 copying dedalus/core/operators.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-30T01:42:33,151 copying dedalus/core/solvers.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-30T01:42:33,154 copying dedalus/core/domain.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-30T01:42:33,156 copying dedalus/core/evaluator.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-30T01:42:33,159 copying dedalus/core/coords.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-30T01:42:33,163 creating build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-30T01:42:33,164 copying dedalus/tests/test_output.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-30T01:42:33,166 copying dedalus/tests/test_spherical_arithmetic.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-30T01:42:33,168 copying dedalus/tests/test_polar_calculus.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-30T01:42:33,170 copying dedalus/tests/test_spherical_ncc.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-30T01:42:33,172 copying dedalus/tests/test_cylinder_calculus.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-30T01:42:33,174 copying dedalus/tests/test_clenshaw.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-30T01:42:33,176 copying dedalus/tests/test_spherical_operators.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-30T01:42:33,179 copying dedalus/tests/test_cartesian_ncc.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-30T01:42:33,180 copying dedalus/tests/test_sphere_ncc.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-30T01:42:33,183 copying dedalus/tests/test_evp.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-30T01:42:33,185 copying dedalus/tests/test_lbvp.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-30T01:42:33,187 copying dedalus/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-30T01:42:33,189 copying dedalus/tests/test_polar_operators.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-30T01:42:33,191 copying dedalus/tests/test_cylinder_operators.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-30T01:42:33,193 copying dedalus/tests/test_nlbvp.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-30T01:42:33,195 copying dedalus/tests/test_cylinder_ncc.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-30T01:42:33,198 copying dedalus/tests/test_cartesian_operators.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-30T01:42:33,200 copying dedalus/tests/test_transforms.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-30T01:42:33,203 copying dedalus/tests/ball_diffusion_analytical_eigenvalues.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-30T01:42:33,204 copying dedalus/tests/test_cfl.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-30T01:42:33,206 copying dedalus/tests/test_grid_operators.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-30T01:42:33,208 copying dedalus/tests/test_sphere_calculus.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-30T01:42:33,211 copying dedalus/tests/test_spherical_calculus.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-30T01:42:33,213 copying dedalus/tests/test_ivp.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-30T01:42:33,214 copying dedalus/tests/test_jacobi_operators.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-30T01:42:33,216 copying dedalus/tests/test_polar_ncc.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-30T01:42:33,219 copying dedalus/tests/test_fourier_operators.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-30T01:42:33,221 creating build/lib.linux-armv7l-cpython-39/dedalus/extras 2024-01-30T01:42:33,222 copying dedalus/extras/flow_tools.py -> build/lib.linux-armv7l-cpython-39/dedalus/extras 2024-01-30T01:42:33,224 copying dedalus/extras/__init__.py -> build/lib.linux-armv7l-cpython-39/dedalus/extras 2024-01-30T01:42:33,225 copying dedalus/extras/plot_tools.py -> build/lib.linux-armv7l-cpython-39/dedalus/extras 2024-01-30T01:42:33,229 creating build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-30T01:42:33,230 copying dedalus/tools/general.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-30T01:42:33,231 copying dedalus/tools/plot_op.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-30T01:42:33,233 copying dedalus/tools/progress.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-30T01:42:33,235 copying dedalus/tools/logging.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-30T01:42:33,236 copying dedalus/tools/parallel.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-30T01:42:33,238 copying dedalus/tools/parsing.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-30T01:42:33,239 copying dedalus/tools/clenshaw.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-30T01:42:33,241 copying dedalus/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-30T01:42:33,242 copying dedalus/tools/random_arrays.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-30T01:42:33,244 copying dedalus/tools/cache.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-30T01:42:33,246 copying dedalus/tools/config.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-30T01:42:33,248 copying dedalus/tools/dispatch.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-30T01:42:33,249 copying dedalus/tools/post.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-30T01:42:33,251 copying dedalus/tools/jacobi.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-30T01:42:33,254 copying dedalus/tools/exceptions.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-30T01:42:33,255 copying dedalus/tools/array.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-30T01:42:33,258 creating build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-30T01:42:33,259 copying dedalus/libraries/dedalus_sphere/sphere.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-30T01:42:33,261 copying dedalus/libraries/dedalus_sphere/tuple_tools.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-30T01:42:33,263 copying dedalus/libraries/dedalus_sphere/clenshaw.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-30T01:42:33,265 copying dedalus/libraries/dedalus_sphere/sphere_wrapper.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-30T01:42:33,266 copying dedalus/libraries/dedalus_sphere/__init__.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-30T01:42:33,268 copying dedalus/libraries/dedalus_sphere/zernike.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-30T01:42:33,270 copying dedalus/libraries/dedalus_sphere/timesteppers.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-30T01:42:33,272 copying dedalus/libraries/dedalus_sphere/shell.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-30T01:42:33,274 copying dedalus/libraries/dedalus_sphere/old_intertwiner.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-30T01:42:33,275 copying dedalus/libraries/dedalus_sphere/operators.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-30T01:42:33,277 copying dedalus/libraries/dedalus_sphere/spin_operators.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-30T01:42:33,279 copying dedalus/libraries/dedalus_sphere/jacobi.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-30T01:42:33,281 copying dedalus/libraries/dedalus_sphere/ball_wrapper.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-30T01:42:33,284 copying dedalus/libraries/dedalus_sphere/annulus.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-30T01:42:33,286 creating build/lib.linux-armv7l-cpython-39/dedalus/libraries/fftw 2024-01-30T01:42:33,287 copying dedalus/libraries/fftw/__init__.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/fftw 2024-01-30T01:42:33,292 copying dedalus/dedalus.cfg -> build/lib.linux-armv7l-cpython-39/dedalus 2024-01-30T01:42:33,294 copying dedalus/examples.tar.gz -> build/lib.linux-armv7l-cpython-39/dedalus 2024-01-30T01:42:33,302 running build_ext 2024-01-30T01:42:33,309 building 'dedalus.core.transposes' extension 2024-01-30T01:42:33,309 creating build/temp.linux-armv7l-cpython-39 2024-01-30T01:42:33,310 creating build/temp.linux-armv7l-cpython-39/dedalus 2024-01-30T01:42:33,310 creating build/temp.linux-armv7l-cpython-39/dedalus/core 2024-01-30T01:42:33,311 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-rmsm9o90/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-build-env-rmsm9o90/overlay/lib/python3.9/site-packages/mpi4py/include -Idedalus/libraries/fftw/ -I/usr/include/python3.9 -c dedalus/core/transposes.c -o build/temp.linux-armv7l-cpython-39/dedalus/core/transposes.o -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -Wno-unused-function -fopenmp 2024-01-30T01:42:33,701 dedalus/core/transposes.c:1235:10: fatal error: mpi.h: No such file or directory 2024-01-30T01:42:33,701 1235 | #include "mpi.h" 2024-01-30T01:42:33,701 | ^~~~~~~ 2024-01-30T01:42:33,701 compilation terminated. 2024-01-30T01:42:33,708 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2024-01-30T01:42:33,868 ERROR: Building wheel for dedalus (pyproject.toml) exited with 1 2024-01-30T01:42:33,885 [bold magenta]full command[/]: [blue]/usr/bin/python3 /home/piwheels/.local/lib/python3.9/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmp16bo49zx[/] 2024-01-30T01:42:33,886 [bold magenta]cwd[/]: /tmp/pip-wheel-j5xp2nrx/dedalus_1dabf6297c0d4f11bcc87647aae32d59 2024-01-30T01:42:33,886 Building wheel for dedalus (pyproject.toml): finished with status 'error' 2024-01-30T01:42:33,888 ERROR: Failed building wheel for dedalus 2024-01-30T01:42:33,890 Failed to build dedalus 2024-01-30T01:42:33,891 ERROR: Failed to build one or more wheels 2024-01-30T01:42:33,893 Exception information: 2024-01-30T01:42:33,893 Traceback (most recent call last): 2024-01-30T01:42:33,893 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2024-01-30T01:42:33,893 status = run_func(*args) 2024-01-30T01:42:33,893 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 245, in wrapper 2024-01-30T01:42:33,893 return func(self, options, args) 2024-01-30T01:42:33,893 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 181, in run 2024-01-30T01:42:33,893 raise CommandError("Failed to build one or more wheels") 2024-01-30T01:42:33,893 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2024-01-30T01:42:33,896 Removed build tracker: '/tmp/pip-build-tracker-gc8ye2hk'