2024-01-31T12:09:26,703 Created temporary directory: /tmp/pip-build-tracker-hi7ns66d 2024-01-31T12:09:26,704 Initialized build tracking at /tmp/pip-build-tracker-hi7ns66d 2024-01-31T12:09:26,705 Created build tracker: /tmp/pip-build-tracker-hi7ns66d 2024-01-31T12:09:26,705 Entered build tracker: /tmp/pip-build-tracker-hi7ns66d 2024-01-31T12:09:26,706 Created temporary directory: /tmp/pip-wheel-9auzqir_ 2024-01-31T12:09:26,709 Created temporary directory: /tmp/pip-ephem-wheel-cache-gp9dq3o7 2024-01-31T12:09:26,731 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-31T12:09:26,735 2 location(s) to search for versions of atlas-densities: 2024-01-31T12:09:26,735 * https://pypi.org/simple/atlas-densities/ 2024-01-31T12:09:26,735 * https://www.piwheels.org/simple/atlas-densities/ 2024-01-31T12:09:26,735 Fetching project page and analyzing links: https://pypi.org/simple/atlas-densities/ 2024-01-31T12:09:26,736 Getting page https://pypi.org/simple/atlas-densities/ 2024-01-31T12:09:26,738 Found index url https://pypi.org/simple/ 2024-01-31T12:09:26,949 Fetched page https://pypi.org/simple/atlas-densities/ as application/vnd.pypi.simple.v1+json 2024-01-31T12:09:26,952 Found link https://files.pythonhosted.org/packages/75/a0/31e863dae4118b005ede7f6d9098a6910b9864be8a7912235629124fd1fe/atlas-densities-0.1.1.dev1.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.1.1.dev1 2024-01-31T12:09:26,953 Found link https://files.pythonhosted.org/packages/de/06/e8be8865b4bd500f567d873b884c95bc950e82d6b629daf4d2b51feee07f/atlas-densities-0.1.1.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.1.1 2024-01-31T12:09:26,954 Found link https://files.pythonhosted.org/packages/1c/7f/424e4e2a31de90b29ad4b08c106a94110c84fd3472800a26707cb6793cda/atlas-densities-0.1.2.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.1.2 2024-01-31T12:09:26,955 Found link https://files.pythonhosted.org/packages/d4/ff/487cd59cb1c04b581dfba1c835112a7d148c70f90af88e968e5013cfd229/atlas-densities-0.1.3.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.1.3 2024-01-31T12:09:26,956 Found link https://files.pythonhosted.org/packages/86/f5/7c7feea0c4c3d9bed1be86bed2d079ec3d076053276e24de09639bf6c4dd/atlas-densities-0.1.4.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.1.4 2024-01-31T12:09:26,957 Found link https://files.pythonhosted.org/packages/2c/ed/41e6c8f2ff9247f7c5b77a43c28727bf4c9a70bf1e7d9b6d2683e02be24e/atlas-densities-0.1.5.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.1.5 2024-01-31T12:09:26,958 Found link https://files.pythonhosted.org/packages/21/c8/9e8d339c85e1dc6c8aa7150f71176e1c86465678e142550fc02ff9298e9b/atlas-densities-0.2.0.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.2.0 2024-01-31T12:09:26,959 Found link https://files.pythonhosted.org/packages/81/59/e8354e4210eca90f39bf76f7f85aa7bb627fe4fe13eaacd772f1069d7f9e/atlas-densities-0.2.1.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.2.1 2024-01-31T12:09:26,960 Found link https://files.pythonhosted.org/packages/36/b2/076a51f33be3c6886d190364797e6a5abb670a031788ead6bdd23a64f4f0/atlas-densities-0.2.2.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.2.2 2024-01-31T12:09:26,961 Fetching project page and analyzing links: https://www.piwheels.org/simple/atlas-densities/ 2024-01-31T12:09:26,962 Getting page https://www.piwheels.org/simple/atlas-densities/ 2024-01-31T12:09:26,963 Found index url https://www.piwheels.org/simple/ 2024-01-31T12:09:27,127 Fetched page https://www.piwheels.org/simple/atlas-densities/ as text/html 2024-01-31T12:09:27,131 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.2.1-py3-none-any.whl#sha256=7b2fb4c8ebfb6deda2a12d883dbdfeb529aa0b2bfbc4034d0808edd6a289bcee (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2024-01-31T12:09:27,132 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.2.0-py3-none-any.whl#sha256=fb4c5d0d67c2e0fa95f43bf995117dc4d8958809fb8d795522e647de85a2e7e4 (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2024-01-31T12:09:27,133 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.1.5-py3-none-any.whl#sha256=5fef5da80583667be561af3afe70062d015ef24da71c3bef176043bea603c2c6 (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2024-01-31T12:09:27,133 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.1.4-py3-none-any.whl#sha256=d4956925426510d1496ee873465e8178b2599c2fc5e1329503d8335ce50fd1c6 (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2024-01-31T12:09:27,134 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.1.3-py3-none-any.whl#sha256=e570061be8379bb89033a1cbbb97eb0754c41fe0214fa16447a01c7ec91a1a9f (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2024-01-31T12:09:27,134 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.1.2-py3-none-any.whl#sha256=8525ddeb5820cac5646a8e64609c379dfeda0ef3c1e0fddf611b904fe6717f9a (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2024-01-31T12:09:27,135 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.1.1-py3-none-any.whl#sha256=0d8958b6a96c5a8bbb5f56954b074f97f56f62d4bf7d2feb02f324fdd9365ce4 (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2024-01-31T12:09:27,135 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.1.1.dev1-py3-none-any.whl#sha256=d5e13258a7e5662c891cc5061dc517d14138a9ea76e72ad43d422c688c5c73b6 (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2024-01-31T12:09:27,136 Skipping link: not a file: https://www.piwheels.org/simple/atlas-densities/ 2024-01-31T12:09:27,137 Skipping link: not a file: https://pypi.org/simple/atlas-densities/ 2024-01-31T12:09:27,156 Given no hashes to check 1 links for project 'atlas-densities': discarding no candidates 2024-01-31T12:09:27,174 Collecting atlas-densities==0.2.2 2024-01-31T12:09:27,176 Created temporary directory: /tmp/pip-unpack-_ia0q4nk 2024-01-31T12:09:27,313 Downloading atlas-densities-0.2.2.tar.gz (1.3 MB) 2024-01-31T12:09:27,906 Added atlas-densities==0.2.2 from https://files.pythonhosted.org/packages/36/b2/076a51f33be3c6886d190364797e6a5abb670a031788ead6bdd23a64f4f0/atlas-densities-0.2.2.tar.gz to build tracker '/tmp/pip-build-tracker-hi7ns66d' 2024-01-31T12:09:27,907 Running setup.py (path:/tmp/pip-wheel-9auzqir_/atlas-densities_941feaec96b4496eb6dbb983d49822b9/setup.py) egg_info for package atlas-densities 2024-01-31T12:09:27,908 Created temporary directory: /tmp/pip-pip-egg-info-w8wbh_uw 2024-01-31T12:09:27,909 Preparing metadata (setup.py): started 2024-01-31T12:09:27,910 Running command python setup.py egg_info 2024-01-31T12:09:28,592 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2024-01-31T12:09:28,592 !! 2024-01-31T12:09:28,594 ******************************************************************************** 2024-01-31T12:09:28,594 Requirements should be satisfied by a PEP 517 installer. 2024-01-31T12:09:28,595 If you are using pip, you can try `pip install --use-pep517`. 2024-01-31T12:09:28,595 ******************************************************************************** 2024-01-31T12:09:28,597 !! 2024-01-31T12:09:28,597 dist.fetch_build_eggs(dist.setup_requires) 2024-01-31T12:09:31,912 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2024-01-31T12:09:32,018 running egg_info 2024-01-31T12:09:32,019 creating /tmp/pip-pip-egg-info-w8wbh_uw/atlas_densities.egg-info 2024-01-31T12:09:32,045 writing /tmp/pip-pip-egg-info-w8wbh_uw/atlas_densities.egg-info/PKG-INFO 2024-01-31T12:09:32,049 writing dependency_links to /tmp/pip-pip-egg-info-w8wbh_uw/atlas_densities.egg-info/dependency_links.txt 2024-01-31T12:09:32,050 writing entry points to /tmp/pip-pip-egg-info-w8wbh_uw/atlas_densities.egg-info/entry_points.txt 2024-01-31T12:09:32,052 writing requirements to /tmp/pip-pip-egg-info-w8wbh_uw/atlas_densities.egg-info/requires.txt 2024-01-31T12:09:32,053 writing top-level names to /tmp/pip-pip-egg-info-w8wbh_uw/atlas_densities.egg-info/top_level.txt 2024-01-31T12:09:32,055 writing manifest file '/tmp/pip-pip-egg-info-w8wbh_uw/atlas_densities.egg-info/SOURCES.txt' 2024-01-31T12:09:32,224 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-01-31T12:09:32,230 reading manifest file '/tmp/pip-pip-egg-info-w8wbh_uw/atlas_densities.egg-info/SOURCES.txt' 2024-01-31T12:09:32,232 reading manifest template 'MANIFEST.in' 2024-01-31T12:09:32,261 adding license file 'LICENSE.txt' 2024-01-31T12:09:32,262 adding license file 'AUTHORS.txt' 2024-01-31T12:09:32,267 writing manifest file '/tmp/pip-pip-egg-info-w8wbh_uw/atlas_densities.egg-info/SOURCES.txt' 2024-01-31T12:09:32,383 Preparing metadata (setup.py): finished with status 'done' 2024-01-31T12:09:32,388 Source in /tmp/pip-wheel-9auzqir_/atlas-densities_941feaec96b4496eb6dbb983d49822b9 has version 0.2.2, which satisfies requirement atlas-densities==0.2.2 from https://files.pythonhosted.org/packages/36/b2/076a51f33be3c6886d190364797e6a5abb670a031788ead6bdd23a64f4f0/atlas-densities-0.2.2.tar.gz 2024-01-31T12:09:32,389 Removed atlas-densities==0.2.2 from https://files.pythonhosted.org/packages/36/b2/076a51f33be3c6886d190364797e6a5abb670a031788ead6bdd23a64f4f0/atlas-densities-0.2.2.tar.gz from build tracker '/tmp/pip-build-tracker-hi7ns66d' 2024-01-31T12:09:32,396 Created temporary directory: /tmp/pip-unpack-kt4vf76d 2024-01-31T12:09:32,397 Created temporary directory: /tmp/pip-unpack-1eks80ht 2024-01-31T12:09:32,418 Building wheels for collected packages: atlas-densities 2024-01-31T12:09:32,422 Created temporary directory: /tmp/pip-wheel-ddxp_r5w 2024-01-31T12:09:32,422 Building wheel for atlas-densities (setup.py): started 2024-01-31T12:09:32,424 Destination directory: /tmp/pip-wheel-ddxp_r5w 2024-01-31T12:09:32,424 Running command python setup.py bdist_wheel 2024-01-31T12:09:33,105 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2024-01-31T12:09:33,105 !! 2024-01-31T12:09:33,107 ******************************************************************************** 2024-01-31T12:09:33,107 Requirements should be satisfied by a PEP 517 installer. 2024-01-31T12:09:33,108 If you are using pip, you can try `pip install --use-pep517`. 2024-01-31T12:09:33,108 ******************************************************************************** 2024-01-31T12:09:33,109 !! 2024-01-31T12:09:33,110 dist.fetch_build_eggs(dist.setup_requires) 2024-01-31T12:09:33,642 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2024-01-31T12:09:33,739 running bdist_wheel 2024-01-31T12:09:33,844 running build 2024-01-31T12:09:33,845 running build_py 2024-01-31T12:09:33,874 creating build 2024-01-31T12:09:33,875 creating build/lib 2024-01-31T12:09:33,876 creating build/lib/tests 2024-01-31T12:09:33,877 copying tests/mocking_tools.py -> build/lib/tests 2024-01-31T12:09:33,879 copying tests/__init__.py -> build/lib/tests 2024-01-31T12:09:33,881 copying tests/test_utils.py -> build/lib/tests 2024-01-31T12:09:33,883 creating build/lib/atlas_densities 2024-01-31T12:09:33,884 copying atlas_densities/version.py -> build/lib/atlas_densities 2024-01-31T12:09:33,886 copying atlas_densities/__init__.py -> build/lib/atlas_densities 2024-01-31T12:09:33,888 copying atlas_densities/utils.py -> build/lib/atlas_densities 2024-01-31T12:09:33,890 copying atlas_densities/exceptions.py -> build/lib/atlas_densities 2024-01-31T12:09:33,892 creating build/lib/tests/app 2024-01-31T12:09:33,893 copying tests/app/test_cell_densities.py -> build/lib/tests/app 2024-01-31T12:09:33,896 copying tests/app/test_combination.py -> build/lib/tests/app 2024-01-31T12:09:33,898 copying tests/app/test_mtype_densities.py -> build/lib/tests/app 2024-01-31T12:09:33,900 copying tests/app/__init__.py -> build/lib/tests/app 2024-01-31T12:09:33,902 copying tests/app/test_refined_inhibitory_neuron_densities.py -> build/lib/tests/app 2024-01-31T12:09:33,904 creating build/lib/tests/densities 2024-01-31T12:09:33,905 copying tests/densities/test_excitatory_inhibitory_splitting.py -> build/lib/tests/densities 2024-01-31T12:09:33,908 copying tests/densities/test_glia_densities.py -> build/lib/tests/densities 2024-01-31T12:09:33,910 copying tests/densities/test_measurement_to_density.py -> build/lib/tests/densities 2024-01-31T12:09:33,912 copying tests/densities/test_inhibitory_neuron_density.py -> build/lib/tests/densities 2024-01-31T12:09:33,914 copying tests/densities/test_cell_density.py -> build/lib/tests/densities 2024-01-31T12:09:33,916 copying tests/densities/test_fitting.py -> build/lib/tests/densities 2024-01-31T12:09:33,919 copying tests/densities/test_optimization_initialization.py -> build/lib/tests/densities 2024-01-31T12:09:33,922 copying tests/densities/__init__.py -> build/lib/tests/densities 2024-01-31T12:09:33,923 copying tests/densities/test_excel_reader.py -> build/lib/tests/densities 2024-01-31T12:09:33,926 copying tests/densities/test_mtype_densities_from_profiles.py -> build/lib/tests/densities 2024-01-31T12:09:33,928 copying tests/densities/test_mtype_densities_from_map.py -> build/lib/tests/densities 2024-01-31T12:09:33,931 copying tests/densities/test_inhibitory_neuron_density_optimization.py -> build/lib/tests/densities 2024-01-31T12:09:33,933 copying tests/densities/test_inhibitory_neuron_densities_helper.py -> build/lib/tests/densities 2024-01-31T12:09:33,935 copying tests/densities/test_mtype_densities_from_composition.py -> build/lib/tests/densities 2024-01-31T12:09:33,938 copying tests/densities/test_utils.py -> build/lib/tests/densities 2024-01-31T12:09:33,940 copying tests/densities/test_refined_inhibitory_neuron_density.py -> build/lib/tests/densities 2024-01-31T12:09:33,942 copying tests/densities/test_cell_counts.py -> build/lib/tests/densities 2024-01-31T12:09:33,945 creating build/lib/tests/combination 2024-01-31T12:09:33,946 copying tests/combination/test_markers_combinator.py -> build/lib/tests/combination 2024-01-31T12:09:33,948 copying tests/combination/__init__.py -> build/lib/tests/combination 2024-01-31T12:09:33,949 copying tests/combination/test_annotations_combinator.py -> build/lib/tests/combination 2024-01-31T12:09:33,952 creating build/lib/atlas_densities/app 2024-01-31T12:09:33,953 copying atlas_densities/app/cell_densities.py -> build/lib/atlas_densities/app 2024-01-31T12:09:33,956 copying atlas_densities/app/mtype_densities.py -> build/lib/atlas_densities/app 2024-01-31T12:09:33,958 copying atlas_densities/app/__init__.py -> build/lib/atlas_densities/app 2024-01-31T12:09:33,960 copying atlas_densities/app/combination.py -> build/lib/atlas_densities/app 2024-01-31T12:09:33,963 copying atlas_densities/app/utils.py -> build/lib/atlas_densities/app 2024-01-31T12:09:33,964 copying atlas_densities/app/cli.py -> build/lib/atlas_densities/app 2024-01-31T12:09:33,967 creating build/lib/atlas_densities/densities 2024-01-31T12:09:33,968 copying atlas_densities/densities/inhibitory_neuron_density.py -> build/lib/atlas_densities/densities 2024-01-31T12:09:33,970 copying atlas_densities/densities/mtype_densities_from_composition.py -> build/lib/atlas_densities/densities 2024-01-31T12:09:33,972 copying atlas_densities/densities/glia_densities.py -> build/lib/atlas_densities/densities 2024-01-31T12:09:33,974 copying atlas_densities/densities/fitting.py -> build/lib/atlas_densities/densities 2024-01-31T12:09:33,976 copying atlas_densities/densities/measurement_to_density.py -> build/lib/atlas_densities/densities 2024-01-31T12:09:33,979 copying atlas_densities/densities/inhibitory_neuron_densities_optimization.py -> build/lib/atlas_densities/densities 2024-01-31T12:09:33,982 copying atlas_densities/densities/refined_inhibitory_neuron_densities.py -> build/lib/atlas_densities/densities 2024-01-31T12:09:33,984 copying atlas_densities/densities/inhibitory_neuron_densities_helper.py -> build/lib/atlas_densities/densities 2024-01-31T12:09:33,986 copying atlas_densities/densities/__init__.py -> build/lib/atlas_densities/densities 2024-01-31T12:09:33,988 copying atlas_densities/densities/cell_density.py -> build/lib/atlas_densities/densities 2024-01-31T12:09:33,990 copying atlas_densities/densities/excel_reader.py -> build/lib/atlas_densities/densities 2024-01-31T12:09:33,993 copying atlas_densities/densities/excitatory_inhibitory_splitting.py -> build/lib/atlas_densities/densities 2024-01-31T12:09:33,994 copying atlas_densities/densities/utils.py -> build/lib/atlas_densities/densities 2024-01-31T12:09:33,997 copying atlas_densities/densities/cell_counts.py -> build/lib/atlas_densities/densities 2024-01-31T12:09:33,999 copying atlas_densities/densities/mtype_densities_from_profiles.py -> build/lib/atlas_densities/densities 2024-01-31T12:09:34,002 creating build/lib/atlas_densities/combination 2024-01-31T12:09:34,003 copying atlas_densities/combination/markers_combinator.py -> build/lib/atlas_densities/combination 2024-01-31T12:09:34,005 copying atlas_densities/combination/__init__.py -> build/lib/atlas_densities/combination 2024-01-31T12:09:34,007 copying atlas_densities/combination/annotations_combinator.py -> build/lib/atlas_densities/combination 2024-01-31T12:09:34,010 creating build/lib/atlas_densities/app/data 2024-01-31T12:09:34,010 copying atlas_densities/app/data/__init__.py -> build/lib/atlas_densities/app/data 2024-01-31T12:09:34,013 creating build/lib/atlas_densities/densities/mtype_densities_from_map 2024-01-31T12:09:34,014 copying atlas_densities/densities/mtype_densities_from_map/create.py -> build/lib/atlas_densities/densities/mtype_densities_from_map 2024-01-31T12:09:34,016 copying atlas_densities/densities/mtype_densities_from_map/__init__.py -> build/lib/atlas_densities/densities/mtype_densities_from_map 2024-01-31T12:09:34,018 copying atlas_densities/densities/mtype_densities_from_map/utils.py -> build/lib/atlas_densities/densities/mtype_densities_from_map 2024-01-31T12:09:34,019 running egg_info 2024-01-31T12:09:34,073 writing atlas_densities.egg-info/PKG-INFO 2024-01-31T12:09:34,077 writing dependency_links to atlas_densities.egg-info/dependency_links.txt 2024-01-31T12:09:34,079 writing entry points to atlas_densities.egg-info/entry_points.txt 2024-01-31T12:09:34,081 writing requirements to atlas_densities.egg-info/requires.txt 2024-01-31T12:09:34,082 writing top-level names to atlas_densities.egg-info/top_level.txt 2024-01-31T12:09:34,180 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-01-31T12:09:34,183 reading manifest file 'atlas_densities.egg-info/SOURCES.txt' 2024-01-31T12:09:34,192 reading manifest template 'MANIFEST.in' 2024-01-31T12:09:34,220 adding license file 'LICENSE.txt' 2024-01-31T12:09:34,221 adding license file 'AUTHORS.txt' 2024-01-31T12:09:34,228 writing manifest file 'atlas_densities.egg-info/SOURCES.txt' 2024-01-31T12:09:34,231 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'atlas_densities.app.data.markers' is absent from the `packages` configuration. 2024-01-31T12:09:34,232 !! 2024-01-31T12:09:34,233 ******************************************************************************** 2024-01-31T12:09:34,233 ############################ 2024-01-31T12:09:34,233 # Package would be ignored # 2024-01-31T12:09:34,234 ############################ 2024-01-31T12:09:34,234 Python recognizes 'atlas_densities.app.data.markers' as an importable package[^1], 2024-01-31T12:09:34,235 but it is absent from setuptools' `packages` configuration. 2024-01-31T12:09:34,236 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-31T12:09:34,236 package, please make sure that 'atlas_densities.app.data.markers' is explicitly added 2024-01-31T12:09:34,237 to the `packages` configuration field. 2024-01-31T12:09:34,238 Alternatively, you can also rely on setuptools' discovery methods 2024-01-31T12:09:34,238 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-31T12:09:34,239 instead of `find_packages(...)`/`find:`). 2024-01-31T12:09:34,239 You can read more about "package discovery" on setuptools documentation page: 2024-01-31T12:09:34,240 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-31T12:09:34,241 If you don't want 'atlas_densities.app.data.markers' to be distributed and are 2024-01-31T12:09:34,242 already explicitly excluding 'atlas_densities.app.data.markers' via 2024-01-31T12:09:34,242 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-31T12:09:34,243 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-31T12:09:34,243 combination with a more fine grained `package-data` configuration. 2024-01-31T12:09:34,244 You can read more about "package data files" on setuptools documentation page: 2024-01-31T12:09:34,245 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-31T12:09:34,247 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-31T12:09:34,248 even if it does not contain any `.py` files. 2024-01-31T12:09:34,248 On the other hand, currently there is no concept of package data 2024-01-31T12:09:34,249 directory, all directories are treated like packages. 2024-01-31T12:09:34,249 ******************************************************************************** 2024-01-31T12:09:34,250 !! 2024-01-31T12:09:34,251 check.warn(importable) 2024-01-31T12:09:34,251 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'atlas_densities.app.data.measurements' is absent from the `packages` configuration. 2024-01-31T12:09:34,252 !! 2024-01-31T12:09:34,253 ******************************************************************************** 2024-01-31T12:09:34,253 ############################ 2024-01-31T12:09:34,254 # Package would be ignored # 2024-01-31T12:09:34,255 ############################ 2024-01-31T12:09:34,255 Python recognizes 'atlas_densities.app.data.measurements' as an importable package[^1], 2024-01-31T12:09:34,256 but it is absent from setuptools' `packages` configuration. 2024-01-31T12:09:34,257 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-31T12:09:34,257 package, please make sure that 'atlas_densities.app.data.measurements' is explicitly added 2024-01-31T12:09:34,258 to the `packages` configuration field. 2024-01-31T12:09:34,260 Alternatively, you can also rely on setuptools' discovery methods 2024-01-31T12:09:34,261 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-31T12:09:34,262 instead of `find_packages(...)`/`find:`). 2024-01-31T12:09:34,264 You can read more about "package discovery" on setuptools documentation page: 2024-01-31T12:09:34,266 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-31T12:09:34,268 If you don't want 'atlas_densities.app.data.measurements' to be distributed and are 2024-01-31T12:09:34,269 already explicitly excluding 'atlas_densities.app.data.measurements' via 2024-01-31T12:09:34,270 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-31T12:09:34,270 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-31T12:09:34,271 combination with a more fine grained `package-data` configuration. 2024-01-31T12:09:34,272 You can read more about "package data files" on setuptools documentation page: 2024-01-31T12:09:34,273 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-31T12:09:34,275 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-31T12:09:34,275 even if it does not contain any `.py` files. 2024-01-31T12:09:34,276 On the other hand, currently there is no concept of package data 2024-01-31T12:09:34,276 directory, all directories are treated like packages. 2024-01-31T12:09:34,277 ******************************************************************************** 2024-01-31T12:09:34,278 !! 2024-01-31T12:09:34,278 check.warn(importable) 2024-01-31T12:09:34,279 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'atlas_densities.app.data.metadata' is absent from the `packages` configuration. 2024-01-31T12:09:34,279 !! 2024-01-31T12:09:34,280 ******************************************************************************** 2024-01-31T12:09:34,281 ############################ 2024-01-31T12:09:34,281 # Package would be ignored # 2024-01-31T12:09:34,282 ############################ 2024-01-31T12:09:34,283 Python recognizes 'atlas_densities.app.data.metadata' as an importable package[^1], 2024-01-31T12:09:34,283 but it is absent from setuptools' `packages` configuration. 2024-01-31T12:09:34,284 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-31T12:09:34,285 package, please make sure that 'atlas_densities.app.data.metadata' is explicitly added 2024-01-31T12:09:34,285 to the `packages` configuration field. 2024-01-31T12:09:34,287 Alternatively, you can also rely on setuptools' discovery methods 2024-01-31T12:09:34,287 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-31T12:09:34,288 instead of `find_packages(...)`/`find:`). 2024-01-31T12:09:34,289 You can read more about "package discovery" on setuptools documentation page: 2024-01-31T12:09:34,290 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-31T12:09:34,291 If you don't want 'atlas_densities.app.data.metadata' to be distributed and are 2024-01-31T12:09:34,292 already explicitly excluding 'atlas_densities.app.data.metadata' via 2024-01-31T12:09:34,292 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-31T12:09:34,293 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-31T12:09:34,293 combination with a more fine grained `package-data` configuration. 2024-01-31T12:09:34,294 You can read more about "package data files" on setuptools documentation page: 2024-01-31T12:09:34,295 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-31T12:09:34,297 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-31T12:09:34,298 even if it does not contain any `.py` files. 2024-01-31T12:09:34,299 On the other hand, currently there is no concept of package data 2024-01-31T12:09:34,299 directory, all directories are treated like packages. 2024-01-31T12:09:34,299 ******************************************************************************** 2024-01-31T12:09:34,301 !! 2024-01-31T12:09:34,301 check.warn(importable) 2024-01-31T12:09:34,302 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'atlas_densities.app.data.mtypes' is absent from the `packages` configuration. 2024-01-31T12:09:34,302 !! 2024-01-31T12:09:34,303 ******************************************************************************** 2024-01-31T12:09:34,304 ############################ 2024-01-31T12:09:34,304 # Package would be ignored # 2024-01-31T12:09:34,305 ############################ 2024-01-31T12:09:34,305 Python recognizes 'atlas_densities.app.data.mtypes' as an importable package[^1], 2024-01-31T12:09:34,305 but it is absent from setuptools' `packages` configuration. 2024-01-31T12:09:34,307 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-31T12:09:34,309 package, please make sure that 'atlas_densities.app.data.mtypes' is explicitly added 2024-01-31T12:09:34,312 to the `packages` configuration field. 2024-01-31T12:09:34,316 Alternatively, you can also rely on setuptools' discovery methods 2024-01-31T12:09:34,316 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-31T12:09:34,317 instead of `find_packages(...)`/`find:`). 2024-01-31T12:09:34,318 You can read more about "package discovery" on setuptools documentation page: 2024-01-31T12:09:34,319 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-31T12:09:34,320 If you don't want 'atlas_densities.app.data.mtypes' to be distributed and are 2024-01-31T12:09:34,321 already explicitly excluding 'atlas_densities.app.data.mtypes' via 2024-01-31T12:09:34,321 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-31T12:09:34,322 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-31T12:09:34,322 combination with a more fine grained `package-data` configuration. 2024-01-31T12:09:34,323 You can read more about "package data files" on setuptools documentation page: 2024-01-31T12:09:34,324 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-31T12:09:34,326 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-31T12:09:34,327 even if it does not contain any `.py` files. 2024-01-31T12:09:34,327 On the other hand, currently there is no concept of package data 2024-01-31T12:09:34,328 directory, all directories are treated like packages. 2024-01-31T12:09:34,328 ******************************************************************************** 2024-01-31T12:09:34,329 !! 2024-01-31T12:09:34,330 check.warn(importable) 2024-01-31T12:09:34,331 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'atlas_densities.app.data.mtypes.composition' is absent from the `packages` configuration. 2024-01-31T12:09:34,331 !! 2024-01-31T12:09:34,332 ******************************************************************************** 2024-01-31T12:09:34,333 ############################ 2024-01-31T12:09:34,333 # Package would be ignored # 2024-01-31T12:09:34,334 ############################ 2024-01-31T12:09:34,335 Python recognizes 'atlas_densities.app.data.mtypes.composition' as an importable package[^1], 2024-01-31T12:09:34,336 but it is absent from setuptools' `packages` configuration. 2024-01-31T12:09:34,337 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-31T12:09:34,338 package, please make sure that 'atlas_densities.app.data.mtypes.composition' is explicitly added 2024-01-31T12:09:34,339 to the `packages` configuration field. 2024-01-31T12:09:34,344 Alternatively, you can also rely on setuptools' discovery methods 2024-01-31T12:09:34,345 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-31T12:09:34,346 instead of `find_packages(...)`/`find:`). 2024-01-31T12:09:34,352 You can read more about "package discovery" on setuptools documentation page: 2024-01-31T12:09:34,354 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-31T12:09:34,355 If you don't want 'atlas_densities.app.data.mtypes.composition' to be distributed and are 2024-01-31T12:09:34,356 already explicitly excluding 'atlas_densities.app.data.mtypes.composition' via 2024-01-31T12:09:34,356 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-31T12:09:34,356 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-31T12:09:34,357 combination with a more fine grained `package-data` configuration. 2024-01-31T12:09:34,360 You can read more about "package data files" on setuptools documentation page: 2024-01-31T12:09:34,362 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-31T12:09:34,364 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-31T12:09:34,364 even if it does not contain any `.py` files. 2024-01-31T12:09:34,365 On the other hand, currently there is no concept of package data 2024-01-31T12:09:34,367 directory, all directories are treated like packages. 2024-01-31T12:09:34,369 ******************************************************************************** 2024-01-31T12:09:34,370 !! 2024-01-31T12:09:34,371 check.warn(importable) 2024-01-31T12:09:34,371 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'atlas_densities.app.data.mtypes.density_profiles' is absent from the `packages` configuration. 2024-01-31T12:09:34,372 !! 2024-01-31T12:09:34,373 ******************************************************************************** 2024-01-31T12:09:34,373 ############################ 2024-01-31T12:09:34,374 # Package would be ignored # 2024-01-31T12:09:34,374 ############################ 2024-01-31T12:09:34,375 Python recognizes 'atlas_densities.app.data.mtypes.density_profiles' as an importable package[^1], 2024-01-31T12:09:34,376 but it is absent from setuptools' `packages` configuration. 2024-01-31T12:09:34,378 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-31T12:09:34,379 package, please make sure that 'atlas_densities.app.data.mtypes.density_profiles' is explicitly added 2024-01-31T12:09:34,379 to the `packages` configuration field. 2024-01-31T12:09:34,380 Alternatively, you can also rely on setuptools' discovery methods 2024-01-31T12:09:34,381 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-31T12:09:34,381 instead of `find_packages(...)`/`find:`). 2024-01-31T12:09:34,382 You can read more about "package discovery" on setuptools documentation page: 2024-01-31T12:09:34,383 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-31T12:09:34,384 If you don't want 'atlas_densities.app.data.mtypes.density_profiles' to be distributed and are 2024-01-31T12:09:34,384 already explicitly excluding 'atlas_densities.app.data.mtypes.density_profiles' via 2024-01-31T12:09:34,385 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-31T12:09:34,386 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-31T12:09:34,386 combination with a more fine grained `package-data` configuration. 2024-01-31T12:09:34,387 You can read more about "package data files" on setuptools documentation page: 2024-01-31T12:09:34,388 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-31T12:09:34,389 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-31T12:09:34,389 even if it does not contain any `.py` files. 2024-01-31T12:09:34,390 On the other hand, currently there is no concept of package data 2024-01-31T12:09:34,390 directory, all directories are treated like packages. 2024-01-31T12:09:34,390 ******************************************************************************** 2024-01-31T12:09:34,391 !! 2024-01-31T12:09:34,392 check.warn(importable) 2024-01-31T12:09:34,392 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'atlas_densities.app.data.mtypes.density_profiles.meta' is absent from the `packages` configuration. 2024-01-31T12:09:34,393 !! 2024-01-31T12:09:34,393 ******************************************************************************** 2024-01-31T12:09:34,394 ############################ 2024-01-31T12:09:34,394 # Package would be ignored # 2024-01-31T12:09:34,395 ############################ 2024-01-31T12:09:34,395 Python recognizes 'atlas_densities.app.data.mtypes.density_profiles.meta' as an importable package[^1], 2024-01-31T12:09:34,395 but it is absent from setuptools' `packages` configuration. 2024-01-31T12:09:34,396 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-31T12:09:34,397 package, please make sure that 'atlas_densities.app.data.mtypes.density_profiles.meta' is explicitly added 2024-01-31T12:09:34,397 to the `packages` configuration field. 2024-01-31T12:09:34,398 Alternatively, you can also rely on setuptools' discovery methods 2024-01-31T12:09:34,399 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-31T12:09:34,399 instead of `find_packages(...)`/`find:`). 2024-01-31T12:09:34,400 You can read more about "package discovery" on setuptools documentation page: 2024-01-31T12:09:34,401 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-31T12:09:34,402 If you don't want 'atlas_densities.app.data.mtypes.density_profiles.meta' to be distributed and are 2024-01-31T12:09:34,403 already explicitly excluding 'atlas_densities.app.data.mtypes.density_profiles.meta' via 2024-01-31T12:09:34,403 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-31T12:09:34,403 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-31T12:09:34,404 combination with a more fine grained `package-data` configuration. 2024-01-31T12:09:34,405 You can read more about "package data files" on setuptools documentation page: 2024-01-31T12:09:34,406 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-31T12:09:34,407 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-31T12:09:34,408 even if it does not contain any `.py` files. 2024-01-31T12:09:34,408 On the other hand, currently there is no concept of package data 2024-01-31T12:09:34,409 directory, all directories are treated like packages. 2024-01-31T12:09:34,409 ******************************************************************************** 2024-01-31T12:09:34,411 !! 2024-01-31T12:09:34,411 check.warn(importable) 2024-01-31T12:09:34,412 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'atlas_densities.app.data.mtypes.density_profiles.profiles' is absent from the `packages` configuration. 2024-01-31T12:09:34,412 !! 2024-01-31T12:09:34,413 ******************************************************************************** 2024-01-31T12:09:34,413 ############################ 2024-01-31T12:09:34,414 # Package would be ignored # 2024-01-31T12:09:34,414 ############################ 2024-01-31T12:09:34,414 Python recognizes 'atlas_densities.app.data.mtypes.density_profiles.profiles' as an importable package[^1], 2024-01-31T12:09:34,415 but it is absent from setuptools' `packages` configuration. 2024-01-31T12:09:34,416 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-31T12:09:34,416 package, please make sure that 'atlas_densities.app.data.mtypes.density_profiles.profiles' is explicitly added 2024-01-31T12:09:34,417 to the `packages` configuration field. 2024-01-31T12:09:34,418 Alternatively, you can also rely on setuptools' discovery methods 2024-01-31T12:09:34,418 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-31T12:09:34,418 instead of `find_packages(...)`/`find:`). 2024-01-31T12:09:34,419 You can read more about "package discovery" on setuptools documentation page: 2024-01-31T12:09:34,420 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-31T12:09:34,421 If you don't want 'atlas_densities.app.data.mtypes.density_profiles.profiles' to be distributed and are 2024-01-31T12:09:34,421 already explicitly excluding 'atlas_densities.app.data.mtypes.density_profiles.profiles' via 2024-01-31T12:09:34,422 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-31T12:09:34,422 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-31T12:09:34,423 combination with a more fine grained `package-data` configuration. 2024-01-31T12:09:34,424 You can read more about "package data files" on setuptools documentation page: 2024-01-31T12:09:34,425 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-31T12:09:34,426 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-31T12:09:34,426 even if it does not contain any `.py` files. 2024-01-31T12:09:34,427 On the other hand, currently there is no concept of package data 2024-01-31T12:09:34,427 directory, all directories are treated like packages. 2024-01-31T12:09:34,428 ******************************************************************************** 2024-01-31T12:09:34,429 !! 2024-01-31T12:09:34,429 check.warn(importable) 2024-01-31T12:09:34,430 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'atlas_densities.app.data.mtypes.probability_map' is absent from the `packages` configuration. 2024-01-31T12:09:34,430 !! 2024-01-31T12:09:34,431 ******************************************************************************** 2024-01-31T12:09:34,432 ############################ 2024-01-31T12:09:34,432 # Package would be ignored # 2024-01-31T12:09:34,433 ############################ 2024-01-31T12:09:34,433 Python recognizes 'atlas_densities.app.data.mtypes.probability_map' as an importable package[^1], 2024-01-31T12:09:34,434 but it is absent from setuptools' `packages` configuration. 2024-01-31T12:09:34,435 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-31T12:09:34,435 package, please make sure that 'atlas_densities.app.data.mtypes.probability_map' is explicitly added 2024-01-31T12:09:34,436 to the `packages` configuration field. 2024-01-31T12:09:34,437 Alternatively, you can also rely on setuptools' discovery methods 2024-01-31T12:09:34,437 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-31T12:09:34,438 instead of `find_packages(...)`/`find:`). 2024-01-31T12:09:34,438 You can read more about "package discovery" on setuptools documentation page: 2024-01-31T12:09:34,439 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-31T12:09:34,440 If you don't want 'atlas_densities.app.data.mtypes.probability_map' to be distributed and are 2024-01-31T12:09:34,441 already explicitly excluding 'atlas_densities.app.data.mtypes.probability_map' via 2024-01-31T12:09:34,441 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-31T12:09:34,441 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-31T12:09:34,442 combination with a more fine grained `package-data` configuration. 2024-01-31T12:09:34,443 You can read more about "package data files" on setuptools documentation page: 2024-01-31T12:09:34,444 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-31T12:09:34,445 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-31T12:09:34,446 even if it does not contain any `.py` files. 2024-01-31T12:09:34,446 On the other hand, currently there is no concept of package data 2024-01-31T12:09:34,446 directory, all directories are treated like packages. 2024-01-31T12:09:34,447 ******************************************************************************** 2024-01-31T12:09:34,448 !! 2024-01-31T12:09:34,448 check.warn(importable) 2024-01-31T12:09:34,449 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'tests.densities.data.meta' is absent from the `packages` configuration. 2024-01-31T12:09:34,449 !! 2024-01-31T12:09:34,450 ******************************************************************************** 2024-01-31T12:09:34,451 ############################ 2024-01-31T12:09:34,451 # Package would be ignored # 2024-01-31T12:09:34,451 ############################ 2024-01-31T12:09:34,452 Python recognizes 'tests.densities.data.meta' as an importable package[^1], 2024-01-31T12:09:34,452 but it is absent from setuptools' `packages` configuration. 2024-01-31T12:09:34,453 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-31T12:09:34,454 package, please make sure that 'tests.densities.data.meta' is explicitly added 2024-01-31T12:09:34,455 to the `packages` configuration field. 2024-01-31T12:09:34,456 Alternatively, you can also rely on setuptools' discovery methods 2024-01-31T12:09:34,456 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-31T12:09:34,457 instead of `find_packages(...)`/`find:`). 2024-01-31T12:09:34,457 You can read more about "package discovery" on setuptools documentation page: 2024-01-31T12:09:34,458 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-31T12:09:34,459 If you don't want 'tests.densities.data.meta' to be distributed and are 2024-01-31T12:09:34,460 already explicitly excluding 'tests.densities.data.meta' via 2024-01-31T12:09:34,460 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-31T12:09:34,461 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-31T12:09:34,461 combination with a more fine grained `package-data` configuration. 2024-01-31T12:09:34,462 You can read more about "package data files" on setuptools documentation page: 2024-01-31T12:09:34,464 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-31T12:09:34,465 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-31T12:09:34,465 even if it does not contain any `.py` files. 2024-01-31T12:09:34,466 On the other hand, currently there is no concept of package data 2024-01-31T12:09:34,466 directory, all directories are treated like packages. 2024-01-31T12:09:34,466 ******************************************************************************** 2024-01-31T12:09:34,467 !! 2024-01-31T12:09:34,468 check.warn(importable) 2024-01-31T12:09:34,468 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'tests.densities.data.mtypes' is absent from the `packages` configuration. 2024-01-31T12:09:34,468 !! 2024-01-31T12:09:34,469 ******************************************************************************** 2024-01-31T12:09:34,470 ############################ 2024-01-31T12:09:34,470 # Package would be ignored # 2024-01-31T12:09:34,470 ############################ 2024-01-31T12:09:34,471 Python recognizes 'tests.densities.data.mtypes' as an importable package[^1], 2024-01-31T12:09:34,471 but it is absent from setuptools' `packages` configuration. 2024-01-31T12:09:34,472 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-31T12:09:34,473 package, please make sure that 'tests.densities.data.mtypes' is explicitly added 2024-01-31T12:09:34,473 to the `packages` configuration field. 2024-01-31T12:09:34,474 Alternatively, you can also rely on setuptools' discovery methods 2024-01-31T12:09:34,474 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-31T12:09:34,475 instead of `find_packages(...)`/`find:`). 2024-01-31T12:09:34,476 You can read more about "package discovery" on setuptools documentation page: 2024-01-31T12:09:34,476 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-31T12:09:34,477 If you don't want 'tests.densities.data.mtypes' to be distributed and are 2024-01-31T12:09:34,478 already explicitly excluding 'tests.densities.data.mtypes' via 2024-01-31T12:09:34,478 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-31T12:09:34,479 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-31T12:09:34,479 combination with a more fine grained `package-data` configuration. 2024-01-31T12:09:34,480 You can read more about "package data files" on setuptools documentation page: 2024-01-31T12:09:34,481 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-31T12:09:34,483 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-31T12:09:34,483 even if it does not contain any `.py` files. 2024-01-31T12:09:34,484 On the other hand, currently there is no concept of package data 2024-01-31T12:09:34,484 directory, all directories are treated like packages. 2024-01-31T12:09:34,485 ******************************************************************************** 2024-01-31T12:09:34,485 !! 2024-01-31T12:09:34,486 check.warn(importable) 2024-01-31T12:09:34,487 copying tests/1.json -> build/lib/tests 2024-01-31T12:09:34,487 copying tests/markers_config.yaml -> build/lib/tests 2024-01-31T12:09:34,488 creating build/lib/tests/densities/data 2024-01-31T12:09:34,488 creating build/lib/tests/densities/data/meta 2024-01-31T12:09:34,488 copying tests/densities/data/meta/layers.tsv -> build/lib/tests/densities/data/meta 2024-01-31T12:09:34,489 copying tests/densities/data/meta/mapping.tsv -> build/lib/tests/densities/data/meta 2024-01-31T12:09:34,490 copying tests/densities/data/meta/mapping_exc_only.tsv -> build/lib/tests/densities/data/meta 2024-01-31T12:09:34,491 creating build/lib/tests/densities/data/mtypes 2024-01-31T12:09:34,491 copying tests/densities/data/mtypes/BP.dat -> build/lib/tests/densities/data/mtypes 2024-01-31T12:09:34,491 copying tests/densities/data/mtypes/L2_IPC.dat -> build/lib/tests/densities/data/mtypes 2024-01-31T12:09:34,492 copying tests/densities/data/mtypes/L2_TPC-A.dat -> build/lib/tests/densities/data/mtypes 2024-01-31T12:09:34,492 copying tests/densities/data/mtypes/L3_TPC-A.dat -> build/lib/tests/densities/data/mtypes 2024-01-31T12:09:34,493 copying tests/densities/data/mtypes/L3_TPC-B.dat -> build/lib/tests/densities/data/mtypes 2024-01-31T12:09:34,493 copying tests/densities/data/mtypes/mtype-taxonomy.tsv -> build/lib/tests/densities/data/mtypes 2024-01-31T12:09:34,493 copying atlas_densities/app/data/1.json -> build/lib/atlas_densities/app/data 2024-01-31T12:09:34,494 creating build/lib/atlas_densities/app/data/markers 2024-01-31T12:09:34,494 copying atlas_densities/app/data/markers/README.rst -> build/lib/atlas_densities/app/data/markers 2024-01-31T12:09:34,495 copying atlas_densities/app/data/markers/combine_markers_ccfv2_config.yaml -> build/lib/atlas_densities/app/data/markers 2024-01-31T12:09:34,495 copying atlas_densities/app/data/markers/fit_average_densities_ccfv2_config.yaml -> build/lib/atlas_densities/app/data/markers 2024-01-31T12:09:34,495 copying atlas_densities/app/data/markers/realigned_slices_bbp.json -> build/lib/atlas_densities/app/data/markers 2024-01-31T12:09:34,496 copying atlas_densities/app/data/markers/realigned_slices_ccfv2.json -> build/lib/atlas_densities/app/data/markers 2024-01-31T12:09:34,496 creating build/lib/atlas_densities/app/data/measurements 2024-01-31T12:09:34,497 copying atlas_densities/app/data/measurements/README.rst -> build/lib/atlas_densities/app/data/measurements 2024-01-31T12:09:34,497 copying atlas_densities/app/data/measurements/gaba_papers.xlsx -> build/lib/atlas_densities/app/data/measurements 2024-01-31T12:09:34,497 copying atlas_densities/app/data/measurements/homogenous_regions.csv -> build/lib/atlas_densities/app/data/measurements 2024-01-31T12:09:34,498 copying atlas_densities/app/data/measurements/measurements.csv -> build/lib/atlas_densities/app/data/measurements 2024-01-31T12:09:34,498 copying atlas_densities/app/data/measurements/mmc1.xlsx -> build/lib/atlas_densities/app/data/measurements 2024-01-31T12:09:34,499 copying atlas_densities/app/data/measurements/mmc3.xlsx -> build/lib/atlas_densities/app/data/measurements 2024-01-31T12:09:34,499 copying atlas_densities/app/data/measurements/non_density_measurements.csv -> build/lib/atlas_densities/app/data/measurements 2024-01-31T12:09:34,500 copying atlas_densities/app/data/measurements/std_cells.json -> build/lib/atlas_densities/app/data/measurements 2024-01-31T12:09:34,501 creating build/lib/atlas_densities/app/data/metadata 2024-01-31T12:09:34,501 copying atlas_densities/app/data/metadata/README.txt -> build/lib/atlas_densities/app/data/metadata 2024-01-31T12:09:34,501 copying atlas_densities/app/data/metadata/ca1_metadata.json -> build/lib/atlas_densities/app/data/metadata 2024-01-31T12:09:34,502 copying atlas_densities/app/data/metadata/excitatory-inhibitory-splitting.json -> build/lib/atlas_densities/app/data/metadata 2024-01-31T12:09:34,503 copying atlas_densities/app/data/metadata/group_ids.json -> build/lib/atlas_densities/app/data/metadata 2024-01-31T12:09:34,503 copying atlas_densities/app/data/metadata/isocortex_23_metadata.json -> build/lib/atlas_densities/app/data/metadata 2024-01-31T12:09:34,504 copying atlas_densities/app/data/metadata/isocortex_metadata.json -> build/lib/atlas_densities/app/data/metadata 2024-01-31T12:09:34,504 copying atlas_densities/app/data/metadata/metadata.json -> build/lib/atlas_densities/app/data/metadata 2024-01-31T12:09:34,505 copying atlas_densities/app/data/metadata/thalamus_metadata.json -> build/lib/atlas_densities/app/data/metadata 2024-01-31T12:09:34,505 creating build/lib/atlas_densities/app/data/mtypes 2024-01-31T12:09:34,506 copying atlas_densities/app/data/mtypes/mapping_cortex_all_to_exc_mtypes.csv -> build/lib/atlas_densities/app/data/mtypes 2024-01-31T12:09:34,508 copying atlas_densities/app/data/mtypes/mtypes_probability_map_config.yaml -> build/lib/atlas_densities/app/data/mtypes 2024-01-31T12:09:34,511 creating build/lib/atlas_densities/app/data/mtypes/composition 2024-01-31T12:09:34,514 copying atlas_densities/app/data/mtypes/composition/README.rst -> build/lib/atlas_densities/app/data/mtypes/composition 2024-01-31T12:09:34,516 copying atlas_densities/app/data/mtypes/composition/composition.yaml -> build/lib/atlas_densities/app/data/mtypes/composition 2024-01-31T12:09:34,517 copying atlas_densities/app/data/mtypes/composition/neurons-mtype-taxonomy.tsv -> build/lib/atlas_densities/app/data/mtypes/composition 2024-01-31T12:09:34,518 creating build/lib/atlas_densities/app/data/mtypes/density_profiles 2024-01-31T12:09:34,518 copying atlas_densities/app/data/mtypes/density_profiles/README.rst -> build/lib/atlas_densities/app/data/mtypes/density_profiles 2024-01-31T12:09:34,519 creating build/lib/atlas_densities/app/data/mtypes/density_profiles/meta 2024-01-31T12:09:34,519 copying atlas_densities/app/data/mtypes/density_profiles/meta/layers.tsv -> build/lib/atlas_densities/app/data/mtypes/density_profiles/meta 2024-01-31T12:09:34,520 copying atlas_densities/app/data/mtypes/density_profiles/meta/mapping.tsv -> build/lib/atlas_densities/app/data/mtypes/density_profiles/meta 2024-01-31T12:09:34,520 creating build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,521 copying atlas_densities/app/data/mtypes/density_profiles/profiles/BP.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,522 copying atlas_densities/app/data/mtypes/density_profiles/profiles/BTC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,522 copying atlas_densities/app/data/mtypes/density_profiles/profiles/CHC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,523 copying atlas_densities/app/data/mtypes/density_profiles/profiles/DBC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,524 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L1_DAC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,524 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L1_HAC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,525 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L1_LAC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,525 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L1_NGC-DA.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,526 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L1_NGC-SA.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,527 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L1_SAC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,527 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L2_IPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,528 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L2_TPC-A.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,528 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L2_TPC-B.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,529 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L3_TPC-A.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,530 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L3_TPC-B.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,531 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L4_SSC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,531 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L4_TPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,531 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L4_UPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,532 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TPC-C.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,534 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TTPC-A.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,534 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TTPC-B.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,535 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L5_UPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,535 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L6_BPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,535 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L6_HPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,536 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L6_IPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,536 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L6_TPC-A.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,537 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L6_TPC-C.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,537 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L6_UPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,538 copying atlas_densities/app/data/mtypes/density_profiles/profiles/LBC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,539 copying atlas_densities/app/data/mtypes/density_profiles/profiles/MC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,539 copying atlas_densities/app/data/mtypes/density_profiles/profiles/NBC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,540 copying atlas_densities/app/data/mtypes/density_profiles/profiles/NGC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,541 copying atlas_densities/app/data/mtypes/density_profiles/profiles/SBC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,541 creating build/lib/atlas_densities/app/data/mtypes/probability_map 2024-01-31T12:09:34,542 copying atlas_densities/app/data/mtypes/probability_map/README.rst -> build/lib/atlas_densities/app/data/mtypes/probability_map 2024-01-31T12:09:34,543 copying atlas_densities/app/data/mtypes/probability_map/probability_map.csv -> build/lib/atlas_densities/app/data/mtypes/probability_map 2024-01-31T12:09:34,565 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-01-31T12:09:34,566 !! 2024-01-31T12:09:34,567 ******************************************************************************** 2024-01-31T12:09:34,567 Please avoid running ``setup.py`` directly. 2024-01-31T12:09:34,568 Instead, use pypa/build, pypa/installer or other 2024-01-31T12:09:34,568 standards-based tools. 2024-01-31T12:09:34,569 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-01-31T12:09:34,570 ******************************************************************************** 2024-01-31T12:09:34,571 !! 2024-01-31T12:09:34,571 self.initialize_options() 2024-01-31T12:09:34,596 installing to build/bdist.linux-armv7l/wheel 2024-01-31T12:09:34,596 running install 2024-01-31T12:09:34,621 running install_lib 2024-01-31T12:09:34,648 creating build/bdist.linux-armv7l 2024-01-31T12:09:34,649 creating build/bdist.linux-armv7l/wheel 2024-01-31T12:09:34,650 creating build/bdist.linux-armv7l/wheel/tests 2024-01-31T12:09:34,652 copying build/lib/tests/1.json -> build/bdist.linux-armv7l/wheel/tests 2024-01-31T12:09:34,664 creating build/bdist.linux-armv7l/wheel/tests/app 2024-01-31T12:09:34,664 copying build/lib/tests/app/test_cell_densities.py -> build/bdist.linux-armv7l/wheel/tests/app 2024-01-31T12:09:34,667 copying build/lib/tests/app/test_combination.py -> build/bdist.linux-armv7l/wheel/tests/app 2024-01-31T12:09:34,669 copying build/lib/tests/app/test_mtype_densities.py -> build/bdist.linux-armv7l/wheel/tests/app 2024-01-31T12:09:34,671 copying build/lib/tests/app/__init__.py -> build/bdist.linux-armv7l/wheel/tests/app 2024-01-31T12:09:34,673 copying build/lib/tests/app/test_refined_inhibitory_neuron_densities.py -> build/bdist.linux-armv7l/wheel/tests/app 2024-01-31T12:09:34,675 creating build/bdist.linux-armv7l/wheel/tests/densities 2024-01-31T12:09:34,676 copying build/lib/tests/densities/test_excitatory_inhibitory_splitting.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-01-31T12:09:34,679 copying build/lib/tests/densities/test_glia_densities.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-01-31T12:09:34,681 copying build/lib/tests/densities/test_measurement_to_density.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-01-31T12:09:34,683 copying build/lib/tests/densities/test_inhibitory_neuron_density.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-01-31T12:09:34,685 copying build/lib/tests/densities/test_cell_density.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-01-31T12:09:34,687 copying build/lib/tests/densities/test_fitting.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-01-31T12:09:34,690 copying build/lib/tests/densities/test_optimization_initialization.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-01-31T12:09:34,692 copying build/lib/tests/densities/__init__.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-01-31T12:09:34,694 copying build/lib/tests/densities/test_excel_reader.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-01-31T12:09:34,696 copying build/lib/tests/densities/test_mtype_densities_from_profiles.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-01-31T12:09:34,699 copying build/lib/tests/densities/test_mtype_densities_from_map.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-01-31T12:09:34,701 copying build/lib/tests/densities/test_inhibitory_neuron_density_optimization.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-01-31T12:09:34,704 copying build/lib/tests/densities/test_inhibitory_neuron_densities_helper.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-01-31T12:09:34,706 copying build/lib/tests/densities/test_mtype_densities_from_composition.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-01-31T12:09:34,708 copying build/lib/tests/densities/test_utils.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-01-31T12:09:34,711 copying build/lib/tests/densities/test_refined_inhibitory_neuron_density.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-01-31T12:09:34,713 copying build/lib/tests/densities/test_cell_counts.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-01-31T12:09:34,715 creating build/bdist.linux-armv7l/wheel/tests/densities/data 2024-01-31T12:09:34,717 creating build/bdist.linux-armv7l/wheel/tests/densities/data/meta 2024-01-31T12:09:34,718 copying build/lib/tests/densities/data/meta/mapping.tsv -> build/bdist.linux-armv7l/wheel/tests/densities/data/meta 2024-01-31T12:09:34,719 copying build/lib/tests/densities/data/meta/mapping_exc_only.tsv -> build/bdist.linux-armv7l/wheel/tests/densities/data/meta 2024-01-31T12:09:34,721 copying build/lib/tests/densities/data/meta/layers.tsv -> build/bdist.linux-armv7l/wheel/tests/densities/data/meta 2024-01-31T12:09:34,723 creating build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2024-01-31T12:09:34,724 copying build/lib/tests/densities/data/mtypes/BP.dat -> build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2024-01-31T12:09:34,726 copying build/lib/tests/densities/data/mtypes/L3_TPC-A.dat -> build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2024-01-31T12:09:34,728 copying build/lib/tests/densities/data/mtypes/L3_TPC-B.dat -> build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2024-01-31T12:09:34,729 copying build/lib/tests/densities/data/mtypes/L2_IPC.dat -> build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2024-01-31T12:09:34,731 copying build/lib/tests/densities/data/mtypes/L2_TPC-A.dat -> build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2024-01-31T12:09:34,733 copying build/lib/tests/densities/data/mtypes/mtype-taxonomy.tsv -> build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2024-01-31T12:09:34,734 copying build/lib/tests/mocking_tools.py -> build/bdist.linux-armv7l/wheel/tests 2024-01-31T12:09:34,736 copying build/lib/tests/markers_config.yaml -> build/bdist.linux-armv7l/wheel/tests 2024-01-31T12:09:34,738 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests 2024-01-31T12:09:34,740 creating build/bdist.linux-armv7l/wheel/tests/combination 2024-01-31T12:09:34,741 copying build/lib/tests/combination/test_markers_combinator.py -> build/bdist.linux-armv7l/wheel/tests/combination 2024-01-31T12:09:34,743 copying build/lib/tests/combination/__init__.py -> build/bdist.linux-armv7l/wheel/tests/combination 2024-01-31T12:09:34,744 copying build/lib/tests/combination/test_annotations_combinator.py -> build/bdist.linux-armv7l/wheel/tests/combination 2024-01-31T12:09:34,746 copying build/lib/tests/test_utils.py -> build/bdist.linux-armv7l/wheel/tests 2024-01-31T12:09:34,749 creating build/bdist.linux-armv7l/wheel/atlas_densities 2024-01-31T12:09:34,750 copying build/lib/atlas_densities/version.py -> build/bdist.linux-armv7l/wheel/atlas_densities 2024-01-31T12:09:34,752 creating build/bdist.linux-armv7l/wheel/atlas_densities/app 2024-01-31T12:09:34,753 copying build/lib/atlas_densities/app/cell_densities.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app 2024-01-31T12:09:34,757 copying build/lib/atlas_densities/app/mtype_densities.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app 2024-01-31T12:09:34,759 copying build/lib/atlas_densities/app/__init__.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app 2024-01-31T12:09:34,761 copying build/lib/atlas_densities/app/combination.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app 2024-01-31T12:09:34,763 copying build/lib/atlas_densities/app/utils.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app 2024-01-31T12:09:34,765 copying build/lib/atlas_densities/app/cli.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app 2024-01-31T12:09:34,767 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data 2024-01-31T12:09:34,768 copying build/lib/atlas_densities/app/data/1.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data 2024-01-31T12:09:34,781 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2024-01-31T12:09:34,782 copying build/lib/atlas_densities/app/data/metadata/isocortex_23_metadata.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2024-01-31T12:09:34,784 copying build/lib/atlas_densities/app/data/metadata/thalamus_metadata.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2024-01-31T12:09:34,786 copying build/lib/atlas_densities/app/data/metadata/isocortex_metadata.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2024-01-31T12:09:34,788 copying build/lib/atlas_densities/app/data/metadata/ca1_metadata.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2024-01-31T12:09:34,790 copying build/lib/atlas_densities/app/data/metadata/metadata.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2024-01-31T12:09:34,792 copying build/lib/atlas_densities/app/data/metadata/README.txt -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2024-01-31T12:09:34,793 copying build/lib/atlas_densities/app/data/metadata/group_ids.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2024-01-31T12:09:34,795 copying build/lib/atlas_densities/app/data/metadata/excitatory-inhibitory-splitting.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2024-01-31T12:09:34,798 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2024-01-31T12:09:34,799 copying build/lib/atlas_densities/app/data/measurements/mmc1.xlsx -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2024-01-31T12:09:34,807 copying build/lib/atlas_densities/app/data/measurements/non_density_measurements.csv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2024-01-31T12:09:34,810 copying build/lib/atlas_densities/app/data/measurements/gaba_papers.xlsx -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2024-01-31T12:09:34,814 copying build/lib/atlas_densities/app/data/measurements/std_cells.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2024-01-31T12:09:34,821 copying build/lib/atlas_densities/app/data/measurements/homogenous_regions.csv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2024-01-31T12:09:34,823 copying build/lib/atlas_densities/app/data/measurements/mmc3.xlsx -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2024-01-31T12:09:34,832 copying build/lib/atlas_densities/app/data/measurements/README.rst -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2024-01-31T12:09:34,834 copying build/lib/atlas_densities/app/data/measurements/measurements.csv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2024-01-31T12:09:34,856 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/markers 2024-01-31T12:09:34,857 copying build/lib/atlas_densities/app/data/markers/realigned_slices_ccfv2.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/markers 2024-01-31T12:09:34,860 copying build/lib/atlas_densities/app/data/markers/combine_markers_ccfv2_config.yaml -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/markers 2024-01-31T12:09:34,862 copying build/lib/atlas_densities/app/data/markers/fit_average_densities_ccfv2_config.yaml -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/markers 2024-01-31T12:09:34,864 copying build/lib/atlas_densities/app/data/markers/README.rst -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/markers 2024-01-31T12:09:34,867 copying build/lib/atlas_densities/app/data/markers/realigned_slices_bbp.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/markers 2024-01-31T12:09:34,869 copying build/lib/atlas_densities/app/data/__init__.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data 2024-01-31T12:09:34,871 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes 2024-01-31T12:09:34,873 copying build/lib/atlas_densities/app/data/mtypes/mapping_cortex_all_to_exc_mtypes.csv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes 2024-01-31T12:09:34,875 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles 2024-01-31T12:09:34,877 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,879 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/CHC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,881 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/BP.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,883 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/NBC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,885 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L3_TPC-A.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,888 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L6_IPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,890 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L1_NGC-DA.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,892 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/LBC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,894 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L3_TPC-B.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,896 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/BTC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,898 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/SBC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,900 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L2_IPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,903 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L6_TPC-C.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,905 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L2_TPC-B.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,907 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L1_HAC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,909 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L5_UPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,911 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L4_UPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,913 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/MC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,916 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L1_NGC-SA.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,918 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L6_TPC-A.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,920 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/NGC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,922 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L4_TPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,924 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L1_DAC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,926 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L2_TPC-A.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,928 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TTPC-B.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,931 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TPC-C.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,933 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L4_SSC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,935 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L6_BPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,937 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L1_SAC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,939 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TTPC-A.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,941 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L1_LAC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,944 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L6_UPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,946 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/DBC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,948 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L6_HPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-01-31T12:09:34,950 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/meta 2024-01-31T12:09:34,952 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/meta/mapping.tsv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/meta 2024-01-31T12:09:34,954 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/meta/layers.tsv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/meta 2024-01-31T12:09:34,956 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/README.rst -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles 2024-01-31T12:09:34,959 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/composition 2024-01-31T12:09:34,960 copying build/lib/atlas_densities/app/data/mtypes/composition/neurons-mtype-taxonomy.tsv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/composition 2024-01-31T12:09:34,963 copying build/lib/atlas_densities/app/data/mtypes/composition/composition.yaml -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/composition 2024-01-31T12:09:34,965 copying build/lib/atlas_densities/app/data/mtypes/composition/README.rst -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/composition 2024-01-31T12:09:34,968 copying build/lib/atlas_densities/app/data/mtypes/mtypes_probability_map_config.yaml -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes 2024-01-31T12:09:34,970 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/probability_map 2024-01-31T12:09:34,972 copying build/lib/atlas_densities/app/data/mtypes/probability_map/probability_map.csv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/probability_map 2024-01-31T12:09:34,994 copying build/lib/atlas_densities/app/data/mtypes/probability_map/README.rst -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/probability_map 2024-01-31T12:09:34,996 creating build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-01-31T12:09:34,998 copying build/lib/atlas_densities/densities/inhibitory_neuron_density.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-01-31T12:09:35,000 copying build/lib/atlas_densities/densities/mtype_densities_from_composition.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-01-31T12:09:35,003 copying build/lib/atlas_densities/densities/glia_densities.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-01-31T12:09:35,005 copying build/lib/atlas_densities/densities/fitting.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-01-31T12:09:35,008 copying build/lib/atlas_densities/densities/measurement_to_density.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-01-31T12:09:35,011 copying build/lib/atlas_densities/densities/inhibitory_neuron_densities_optimization.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-01-31T12:09:35,014 copying build/lib/atlas_densities/densities/refined_inhibitory_neuron_densities.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-01-31T12:09:35,017 copying build/lib/atlas_densities/densities/inhibitory_neuron_densities_helper.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-01-31T12:09:35,020 copying build/lib/atlas_densities/densities/__init__.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-01-31T12:09:35,022 copying build/lib/atlas_densities/densities/cell_density.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-01-31T12:09:35,025 copying build/lib/atlas_densities/densities/excel_reader.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-01-31T12:09:35,028 copying build/lib/atlas_densities/densities/excitatory_inhibitory_splitting.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-01-31T12:09:35,030 copying build/lib/atlas_densities/densities/utils.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-01-31T12:09:35,033 copying build/lib/atlas_densities/densities/cell_counts.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-01-31T12:09:35,036 copying build/lib/atlas_densities/densities/mtype_densities_from_profiles.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-01-31T12:09:35,039 creating build/bdist.linux-armv7l/wheel/atlas_densities/densities/mtype_densities_from_map 2024-01-31T12:09:35,040 copying build/lib/atlas_densities/densities/mtype_densities_from_map/create.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities/mtype_densities_from_map 2024-01-31T12:09:35,043 copying build/lib/atlas_densities/densities/mtype_densities_from_map/__init__.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities/mtype_densities_from_map 2024-01-31T12:09:35,045 copying build/lib/atlas_densities/densities/mtype_densities_from_map/utils.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities/mtype_densities_from_map 2024-01-31T12:09:35,047 copying build/lib/atlas_densities/__init__.py -> build/bdist.linux-armv7l/wheel/atlas_densities 2024-01-31T12:09:35,050 creating build/bdist.linux-armv7l/wheel/atlas_densities/combination 2024-01-31T12:09:35,051 copying build/lib/atlas_densities/combination/markers_combinator.py -> build/bdist.linux-armv7l/wheel/atlas_densities/combination 2024-01-31T12:09:35,054 copying build/lib/atlas_densities/combination/__init__.py -> build/bdist.linux-armv7l/wheel/atlas_densities/combination 2024-01-31T12:09:35,055 copying build/lib/atlas_densities/combination/annotations_combinator.py -> build/bdist.linux-armv7l/wheel/atlas_densities/combination 2024-01-31T12:09:35,058 copying build/lib/atlas_densities/utils.py -> build/bdist.linux-armv7l/wheel/atlas_densities 2024-01-31T12:09:35,061 copying build/lib/atlas_densities/exceptions.py -> build/bdist.linux-armv7l/wheel/atlas_densities 2024-01-31T12:09:35,063 running install_egg_info 2024-01-31T12:09:35,092 Copying atlas_densities.egg-info to build/bdist.linux-armv7l/wheel/atlas_densities-0.2.2-py3.11.egg-info 2024-01-31T12:09:35,105 running install_scripts 2024-01-31T12:09:35,129 creating build/bdist.linux-armv7l/wheel/atlas_densities-0.2.2.dist-info/WHEEL 2024-01-31T12:09:35,132 creating '/tmp/pip-wheel-ddxp_r5w/atlas_densities-0.2.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-01-31T12:09:35,134 adding 'atlas_densities/__init__.py' 2024-01-31T12:09:35,136 adding 'atlas_densities/exceptions.py' 2024-01-31T12:09:35,138 adding 'atlas_densities/utils.py' 2024-01-31T12:09:35,140 adding 'atlas_densities/version.py' 2024-01-31T12:09:35,142 adding 'atlas_densities/app/__init__.py' 2024-01-31T12:09:35,148 adding 'atlas_densities/app/cell_densities.py' 2024-01-31T12:09:35,150 adding 'atlas_densities/app/cli.py' 2024-01-31T12:09:35,152 adding 'atlas_densities/app/combination.py' 2024-01-31T12:09:35,155 adding 'atlas_densities/app/mtype_densities.py' 2024-01-31T12:09:35,157 adding 'atlas_densities/app/utils.py' 2024-01-31T12:09:35,185 adding 'atlas_densities/app/data/1.json' 2024-01-31T12:09:35,191 adding 'atlas_densities/app/data/__init__.py' 2024-01-31T12:09:35,193 adding 'atlas_densities/app/data/markers/README.rst' 2024-01-31T12:09:35,195 adding 'atlas_densities/app/data/markers/combine_markers_ccfv2_config.yaml' 2024-01-31T12:09:35,197 adding 'atlas_densities/app/data/markers/fit_average_densities_ccfv2_config.yaml' 2024-01-31T12:09:35,198 adding 'atlas_densities/app/data/markers/realigned_slices_bbp.json' 2024-01-31T12:09:35,200 adding 'atlas_densities/app/data/markers/realigned_slices_ccfv2.json' 2024-01-31T12:09:35,203 adding 'atlas_densities/app/data/measurements/README.rst' 2024-01-31T12:09:35,209 adding 'atlas_densities/app/data/measurements/gaba_papers.xlsx' 2024-01-31T12:09:35,212 adding 'atlas_densities/app/data/measurements/homogenous_regions.csv' 2024-01-31T12:09:35,252 adding 'atlas_densities/app/data/measurements/measurements.csv' 2024-01-31T12:09:35,300 adding 'atlas_densities/app/data/measurements/mmc1.xlsx' 2024-01-31T12:09:35,338 adding 'atlas_densities/app/data/measurements/mmc3.xlsx' 2024-01-31T12:09:35,342 adding 'atlas_densities/app/data/measurements/non_density_measurements.csv' 2024-01-31T12:09:35,356 adding 'atlas_densities/app/data/measurements/std_cells.json' 2024-01-31T12:09:35,359 adding 'atlas_densities/app/data/metadata/README.txt' 2024-01-31T12:09:35,361 adding 'atlas_densities/app/data/metadata/ca1_metadata.json' 2024-01-31T12:09:35,362 adding 'atlas_densities/app/data/metadata/excitatory-inhibitory-splitting.json' 2024-01-31T12:09:35,364 adding 'atlas_densities/app/data/metadata/group_ids.json' 2024-01-31T12:09:35,366 adding 'atlas_densities/app/data/metadata/isocortex_23_metadata.json' 2024-01-31T12:09:35,367 adding 'atlas_densities/app/data/metadata/isocortex_metadata.json' 2024-01-31T12:09:35,369 adding 'atlas_densities/app/data/metadata/metadata.json' 2024-01-31T12:09:35,370 adding 'atlas_densities/app/data/metadata/thalamus_metadata.json' 2024-01-31T12:09:35,372 adding 'atlas_densities/app/data/mtypes/mapping_cortex_all_to_exc_mtypes.csv' 2024-01-31T12:09:35,374 adding 'atlas_densities/app/data/mtypes/mtypes_probability_map_config.yaml' 2024-01-31T12:09:35,376 adding 'atlas_densities/app/data/mtypes/composition/README.rst' 2024-01-31T12:09:35,378 adding 'atlas_densities/app/data/mtypes/composition/composition.yaml' 2024-01-31T12:09:35,380 adding 'atlas_densities/app/data/mtypes/composition/neurons-mtype-taxonomy.tsv' 2024-01-31T12:09:35,382 adding 'atlas_densities/app/data/mtypes/density_profiles/README.rst' 2024-01-31T12:09:35,384 adding 'atlas_densities/app/data/mtypes/density_profiles/meta/layers.tsv' 2024-01-31T12:09:35,385 adding 'atlas_densities/app/data/mtypes/density_profiles/meta/mapping.tsv' 2024-01-31T12:09:35,388 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/BP.dat' 2024-01-31T12:09:35,389 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/BTC.dat' 2024-01-31T12:09:35,391 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/CHC.dat' 2024-01-31T12:09:35,393 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/DBC.dat' 2024-01-31T12:09:35,394 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L1_DAC.dat' 2024-01-31T12:09:35,395 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L1_HAC.dat' 2024-01-31T12:09:35,397 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L1_LAC.dat' 2024-01-31T12:09:35,398 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L1_NGC-DA.dat' 2024-01-31T12:09:35,400 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L1_NGC-SA.dat' 2024-01-31T12:09:35,401 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L1_SAC.dat' 2024-01-31T12:09:35,402 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L2_IPC.dat' 2024-01-31T12:09:35,403 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L2_TPC-A.dat' 2024-01-31T12:09:35,404 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L2_TPC-B.dat' 2024-01-31T12:09:35,405 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L3_TPC-A.dat' 2024-01-31T12:09:35,407 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L3_TPC-B.dat' 2024-01-31T12:09:35,408 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L4_SSC.dat' 2024-01-31T12:09:35,409 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L4_TPC.dat' 2024-01-31T12:09:35,410 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L4_UPC.dat' 2024-01-31T12:09:35,411 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TPC-C.dat' 2024-01-31T12:09:35,412 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TTPC-A.dat' 2024-01-31T12:09:35,413 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TTPC-B.dat' 2024-01-31T12:09:35,415 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L5_UPC.dat' 2024-01-31T12:09:35,416 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L6_BPC.dat' 2024-01-31T12:09:35,417 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L6_HPC.dat' 2024-01-31T12:09:35,418 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L6_IPC.dat' 2024-01-31T12:09:35,419 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L6_TPC-A.dat' 2024-01-31T12:09:35,421 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L6_TPC-C.dat' 2024-01-31T12:09:35,422 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L6_UPC.dat' 2024-01-31T12:09:35,423 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/LBC.dat' 2024-01-31T12:09:35,424 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/MC.dat' 2024-01-31T12:09:35,425 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/NBC.dat' 2024-01-31T12:09:35,427 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/NGC.dat' 2024-01-31T12:09:35,428 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/SBC.dat' 2024-01-31T12:09:35,430 adding 'atlas_densities/app/data/mtypes/probability_map/README.rst' 2024-01-31T12:09:35,454 adding 'atlas_densities/app/data/mtypes/probability_map/probability_map.csv' 2024-01-31T12:09:35,461 adding 'atlas_densities/combination/__init__.py' 2024-01-31T12:09:35,463 adding 'atlas_densities/combination/annotations_combinator.py' 2024-01-31T12:09:35,464 adding 'atlas_densities/combination/markers_combinator.py' 2024-01-31T12:09:35,466 adding 'atlas_densities/densities/__init__.py' 2024-01-31T12:09:35,468 adding 'atlas_densities/densities/cell_counts.py' 2024-01-31T12:09:35,469 adding 'atlas_densities/densities/cell_density.py' 2024-01-31T12:09:35,473 adding 'atlas_densities/densities/excel_reader.py' 2024-01-31T12:09:35,474 adding 'atlas_densities/densities/excitatory_inhibitory_splitting.py' 2024-01-31T12:09:35,478 adding 'atlas_densities/densities/fitting.py' 2024-01-31T12:09:35,480 adding 'atlas_densities/densities/glia_densities.py' 2024-01-31T12:09:35,482 adding 'atlas_densities/densities/inhibitory_neuron_densities_helper.py' 2024-01-31T12:09:35,486 adding 'atlas_densities/densities/inhibitory_neuron_densities_optimization.py' 2024-01-31T12:09:35,488 adding 'atlas_densities/densities/inhibitory_neuron_density.py' 2024-01-31T12:09:35,490 adding 'atlas_densities/densities/measurement_to_density.py' 2024-01-31T12:09:35,492 adding 'atlas_densities/densities/mtype_densities_from_composition.py' 2024-01-31T12:09:35,494 adding 'atlas_densities/densities/mtype_densities_from_profiles.py' 2024-01-31T12:09:35,497 adding 'atlas_densities/densities/refined_inhibitory_neuron_densities.py' 2024-01-31T12:09:35,500 adding 'atlas_densities/densities/utils.py' 2024-01-31T12:09:35,502 adding 'atlas_densities/densities/mtype_densities_from_map/__init__.py' 2024-01-31T12:09:35,504 adding 'atlas_densities/densities/mtype_densities_from_map/create.py' 2024-01-31T12:09:35,505 adding 'atlas_densities/densities/mtype_densities_from_map/utils.py' 2024-01-31T12:09:35,535 adding 'tests/1.json' 2024-01-31T12:09:35,540 adding 'tests/__init__.py' 2024-01-31T12:09:35,542 adding 'tests/markers_config.yaml' 2024-01-31T12:09:35,543 adding 'tests/mocking_tools.py' 2024-01-31T12:09:35,544 adding 'tests/test_utils.py' 2024-01-31T12:09:35,546 adding 'tests/app/__init__.py' 2024-01-31T12:09:35,548 adding 'tests/app/test_cell_densities.py' 2024-01-31T12:09:35,550 adding 'tests/app/test_combination.py' 2024-01-31T12:09:35,552 adding 'tests/app/test_mtype_densities.py' 2024-01-31T12:09:35,553 adding 'tests/app/test_refined_inhibitory_neuron_densities.py' 2024-01-31T12:09:35,555 adding 'tests/combination/__init__.py' 2024-01-31T12:09:35,556 adding 'tests/combination/test_annotations_combinator.py' 2024-01-31T12:09:35,558 adding 'tests/combination/test_markers_combinator.py' 2024-01-31T12:09:35,560 adding 'tests/densities/__init__.py' 2024-01-31T12:09:35,561 adding 'tests/densities/test_cell_counts.py' 2024-01-31T12:09:35,563 adding 'tests/densities/test_cell_density.py' 2024-01-31T12:09:35,565 adding 'tests/densities/test_excel_reader.py' 2024-01-31T12:09:35,567 adding 'tests/densities/test_excitatory_inhibitory_splitting.py' 2024-01-31T12:09:35,569 adding 'tests/densities/test_fitting.py' 2024-01-31T12:09:35,571 adding 'tests/densities/test_glia_densities.py' 2024-01-31T12:09:35,573 adding 'tests/densities/test_inhibitory_neuron_densities_helper.py' 2024-01-31T12:09:35,574 adding 'tests/densities/test_inhibitory_neuron_density.py' 2024-01-31T12:09:35,576 adding 'tests/densities/test_inhibitory_neuron_density_optimization.py' 2024-01-31T12:09:35,577 adding 'tests/densities/test_measurement_to_density.py' 2024-01-31T12:09:35,579 adding 'tests/densities/test_mtype_densities_from_composition.py' 2024-01-31T12:09:35,581 adding 'tests/densities/test_mtype_densities_from_map.py' 2024-01-31T12:09:35,582 adding 'tests/densities/test_mtype_densities_from_profiles.py' 2024-01-31T12:09:35,585 adding 'tests/densities/test_optimization_initialization.py' 2024-01-31T12:09:35,587 adding 'tests/densities/test_refined_inhibitory_neuron_density.py' 2024-01-31T12:09:35,589 adding 'tests/densities/test_utils.py' 2024-01-31T12:09:35,591 adding 'tests/densities/data/meta/layers.tsv' 2024-01-31T12:09:35,592 adding 'tests/densities/data/meta/mapping.tsv' 2024-01-31T12:09:35,593 adding 'tests/densities/data/meta/mapping_exc_only.tsv' 2024-01-31T12:09:35,595 adding 'tests/densities/data/mtypes/BP.dat' 2024-01-31T12:09:35,596 adding 'tests/densities/data/mtypes/L2_IPC.dat' 2024-01-31T12:09:35,597 adding 'tests/densities/data/mtypes/L2_TPC-A.dat' 2024-01-31T12:09:35,598 adding 'tests/densities/data/mtypes/L3_TPC-A.dat' 2024-01-31T12:09:35,599 adding 'tests/densities/data/mtypes/L3_TPC-B.dat' 2024-01-31T12:09:35,600 adding 'tests/densities/data/mtypes/mtype-taxonomy.tsv' 2024-01-31T12:09:35,601 adding 'atlas_densities-0.2.2.dist-info/AUTHORS.txt' 2024-01-31T12:09:35,603 adding 'atlas_densities-0.2.2.dist-info/LICENSE.txt' 2024-01-31T12:09:35,606 adding 'atlas_densities-0.2.2.dist-info/METADATA' 2024-01-31T12:09:35,607 adding 'atlas_densities-0.2.2.dist-info/WHEEL' 2024-01-31T12:09:35,608 adding 'atlas_densities-0.2.2.dist-info/entry_points.txt' 2024-01-31T12:09:35,609 adding 'atlas_densities-0.2.2.dist-info/top_level.txt' 2024-01-31T12:09:35,611 adding 'atlas_densities-0.2.2.dist-info/RECORD' 2024-01-31T12:09:35,624 removing build/bdist.linux-armv7l/wheel 2024-01-31T12:09:35,781 Building wheel for atlas-densities (setup.py): finished with status 'done' 2024-01-31T12:09:35,794 Created wheel for atlas-densities: filename=atlas_densities-0.2.2-py3-none-any.whl size=1072167 sha256=6d563eb822c5ce0bf359464a96b5806b1d5221bdc69cc30d19d0e685368536ec 2024-01-31T12:09:35,795 Stored in directory: /tmp/pip-ephem-wheel-cache-gp9dq3o7/wheels/e5/e1/ef/70aa5e80b91e64d182a7e53170e1fc3b84d722a695a1cd43dc 2024-01-31T12:09:35,813 Successfully built atlas-densities 2024-01-31T12:09:35,853 Removed build tracker: '/tmp/pip-build-tracker-hi7ns66d'