2024-01-31T16:34:42,100 Created temporary directory: /tmp/pip-build-tracker-oa6j4env 2024-01-31T16:34:42,101 Initialized build tracking at /tmp/pip-build-tracker-oa6j4env 2024-01-31T16:34:42,102 Created build tracker: /tmp/pip-build-tracker-oa6j4env 2024-01-31T16:34:42,102 Entered build tracker: /tmp/pip-build-tracker-oa6j4env 2024-01-31T16:34:42,103 Created temporary directory: /tmp/pip-wheel-g8efgafm 2024-01-31T16:34:42,106 Created temporary directory: /tmp/pip-ephem-wheel-cache-hcn3jaz4 2024-01-31T16:34:42,127 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-31T16:34:42,131 2 location(s) to search for versions of vermouth: 2024-01-31T16:34:42,131 * https://pypi.org/simple/vermouth/ 2024-01-31T16:34:42,131 * https://www.piwheels.org/simple/vermouth/ 2024-01-31T16:34:42,132 Fetching project page and analyzing links: https://pypi.org/simple/vermouth/ 2024-01-31T16:34:42,132 Getting page https://pypi.org/simple/vermouth/ 2024-01-31T16:34:42,134 Found index url https://pypi.org/simple/ 2024-01-31T16:34:42,357 Fetched page https://pypi.org/simple/vermouth/ as application/vnd.pypi.simple.v1+json 2024-01-31T16:34:42,364 Found link https://files.pythonhosted.org/packages/c6/b1/274b76764e2ebe0b190708befe8a588d5b645f096609f68723139c80fdee/vermouth-0.1.0.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.1.0 2024-01-31T16:34:42,365 Found link https://files.pythonhosted.org/packages/ee/d9/cc8ed35bf50924fa9bf4d450c620f6f0f45254b00b30c2fe1a7f76b00368/vermouth-0.2.0.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.2.0 2024-01-31T16:34:42,365 Found link https://files.pythonhosted.org/packages/c7/6b/bf90515318a6a1c4e2994db43469e52e638d16400068dfcb7d478e9b7c1a/vermouth-0.3.0.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.3.0 2024-01-31T16:34:42,366 Found link https://files.pythonhosted.org/packages/b2/d5/07402db0608b5e2bdfbf3f8858ccfd2f454f382f50e4a6940b763426cbea/vermouth-0.3.1.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.3.1 2024-01-31T16:34:42,367 Found link https://files.pythonhosted.org/packages/bf/6e/b4e991b3fe595aca6a31cc0449c66b240f50edbf12ebfe80f0d0e592cd5e/vermouth-0.4.0.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.4.0 2024-01-31T16:34:42,367 Found link https://files.pythonhosted.org/packages/2c/72/107e8be40ef06f07a809105debbfb1278aceaee8c363189b9c09fe44f8a2/vermouth-0.4.1.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.4.1 2024-01-31T16:34:42,368 Found link https://files.pythonhosted.org/packages/d2/86/6cc920072226d0a6e5c0e0a28f85414722b023c66c3cccaaf3492ded2cba/vermouth-0.5.0.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.5.0 2024-01-31T16:34:42,369 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/ee/ff/589eae88b25a30d0b086231b459f2927ede30c9ef57e92b84a4d479775f2/vermouth-0.6.0-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2024-01-31T16:34:42,370 Found link https://files.pythonhosted.org/packages/de/df/6ec1631c808589b3eb5dfbb8e22df2803fde0750c30e6305148f14d72256/vermouth-0.6.0.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.6.0 2024-01-31T16:34:42,370 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/de/1f/a29254c72edc7bc749c16f3bf621baa85c6883567469ebcc068b6771abb4/vermouth-0.6.1.dev1-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2024-01-31T16:34:42,371 Found link https://files.pythonhosted.org/packages/f5/75/24a94d58fdd58770f2df5325d29034dbd0a072a0bd99905507a297dc3796/vermouth-0.6.1.dev1.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.6.1.dev1 2024-01-31T16:34:42,372 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/b8/87/07db5eba7bf97abf229dbf76ff759a877057bf94cffff0ded5909422d14a/vermouth-0.7.0-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2024-01-31T16:34:42,372 Found link https://files.pythonhosted.org/packages/94/1f/e6e57cdc03b6afb830671707bffbfccefd383b3efc9dbe086c1d9037c34d/vermouth-0.7.0.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.7.0 2024-01-31T16:34:42,373 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/18/d3/2998a0d56963a85358f7fe385adb3eb9d660c1ce771057008afd5cfd6901/vermouth-0.7.1-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2024-01-31T16:34:42,374 Found link https://files.pythonhosted.org/packages/43/0b/d6cd081c035a321c1149cd8625fad98d969d6413327bbde731f4d30c5e4f/vermouth-0.7.1.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.7.1 2024-01-31T16:34:42,374 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/b2/3a/cb877fe0c178bce0e16ddda0c34fd57902248b07938e3cb72bc1c78bc0d1/vermouth-0.7.2-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2024-01-31T16:34:42,375 Found link https://files.pythonhosted.org/packages/56/a1/1e5a5d54a4d1aed5d50645e5adc4ad026636c1e837d56adce10a54463ad6/vermouth-0.7.2.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.7.2 2024-01-31T16:34:42,375 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/b2/20/f41a35c1b011d730614adab6923c713a58b7731b28b6488e8190a009aec2/vermouth-0.7.3-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2024-01-31T16:34:42,376 Found link https://files.pythonhosted.org/packages/7d/78/12e0752ceab663c708253421692fbc1ee3b1184e1918e2fbc9b06f4f9097/vermouth-0.7.3.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.7.3 2024-01-31T16:34:42,376 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/52/34/e7b82dc063e327fc8f47ab01d2b27363ebd3778e8f45d90ec8ad38486480/vermouth-0.8.1-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2024-01-31T16:34:42,377 Found link https://files.pythonhosted.org/packages/1a/49/4e20bde1dbaab255a469c7944c1e6a767e7449e1dd5b20e3f2524083d6eb/vermouth-0.8.1.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.8.1 2024-01-31T16:34:42,377 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/7e/a1/549f337abec9f3a02d249895a849d3d500008e1d39beb38582c97654e949/vermouth-0.9.0-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2024-01-31T16:34:42,378 Found link https://files.pythonhosted.org/packages/e2/aa/77a78de364e05a2096416338e09f0e5c371e90c3d434d8fa5ba4982e3175/vermouth-0.9.0.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.9.0 2024-01-31T16:34:42,379 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/57/ac/ab6dc7c67e51a2a64dd830a992d3e8e23e785532a87c4e19527cd548bb97/vermouth-0.9.1-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2024-01-31T16:34:42,379 Found link https://files.pythonhosted.org/packages/59/0d/adbfe0a5c7343fe5a7341c4bfa08216edc273c379e2ce8751a8ff8e223a7/vermouth-0.9.1.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.9.1 2024-01-31T16:34:42,380 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/49/75/4ec22d12b99a6be70538a808b22498875fe370f7a80155adc7c3df890c80/vermouth-0.9.3-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2024-01-31T16:34:42,381 Found link https://files.pythonhosted.org/packages/84/fb/8b0409d31d928a77c9ab5f7e28cdc51ae3e749a389e5f523d02d7424a67f/vermouth-0.9.3.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.9.3 2024-01-31T16:34:42,381 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/c5/b8/a35f4f3c9002c38cc912089d3309daae1c3b60021286badbb606362b4d4e/vermouth-0.9.5-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2024-01-31T16:34:42,382 Found link https://files.pythonhosted.org/packages/0a/9b/b4318b5b2e2ec08885ac6eaf41e0fab500d3eb77341c1556e283b7bda837/vermouth-0.9.5.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.9.5 2024-01-31T16:34:42,382 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/e9/50/d3f5301305901af444be9e6d18fdde39bb54794104eb77f75c8a1ab39808/vermouth-0.9.6-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2024-01-31T16:34:42,383 Found link https://files.pythonhosted.org/packages/f2/1e/703491e3de4fd3c249d1df055007c42352ebf22a0cefe6c666f99c880576/vermouth-0.9.6.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.9.6 2024-01-31T16:34:42,384 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/f7/0f/0b816d2d18942b509399547d8e979b515abc144c7d6d60b9aa7b707178fa/vermouth-0.10.0-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2024-01-31T16:34:42,384 Found link https://files.pythonhosted.org/packages/03/1e/2e7464d71c5ee0754b900b76dbe4a5f3ac6486a58c1138e36934f97f551e/vermouth-0.10.0.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.10.0 2024-01-31T16:34:42,385 Fetching project page and analyzing links: https://www.piwheels.org/simple/vermouth/ 2024-01-31T16:34:42,386 Getting page https://www.piwheels.org/simple/vermouth/ 2024-01-31T16:34:42,387 Found index url https://www.piwheels.org/simple/ 2024-01-31T16:34:42,545 Fetched page https://www.piwheels.org/simple/vermouth/ as text/html 2024-01-31T16:34:42,551 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.9.6-py2.py3-none-any.whl#sha256=d8450b9e106940aa63a68b151e6df9efdc4b4826495e4c64cbd076c7b478de08 (from https://www.piwheels.org/simple/vermouth/) 2024-01-31T16:34:42,551 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.9.5-py2.py3-none-any.whl#sha256=b59fbef1a8f42539625f80181897a6bab10ab1aa9dd00a8ced5bcd6a5e9090ab (from https://www.piwheels.org/simple/vermouth/) 2024-01-31T16:34:42,552 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.9.3-py2.py3-none-any.whl#sha256=28c579c2c0792f6e9e78f0ab16f165a1c83a2d5e1e4db5b46b528a9f13127af7 (from https://www.piwheels.org/simple/vermouth/) 2024-01-31T16:34:42,552 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.9.1-py2.py3-none-any.whl#sha256=d081aae0aa5c3bf9d4d2af5221874610db58acfca8080f5cb45f3e76d4624bd8 (from https://www.piwheels.org/simple/vermouth/) 2024-01-31T16:34:42,553 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.9.0-py2.py3-none-any.whl#sha256=af7e389a682ab361277dba8792edfca3ef6ca68d5884be63696c233885c5d31c (from https://www.piwheels.org/simple/vermouth/) 2024-01-31T16:34:42,553 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.8.1-py2.py3-none-any.whl#sha256=f0c9d27ed8796568f7aa9dd2294d10d07fa0f27764ebc2d85ce2715ec2c6a5e5 (from https://www.piwheels.org/simple/vermouth/) 2024-01-31T16:34:42,554 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.7.3-py2.py3-none-any.whl#sha256=a151dce5369142ce6d19a3988e0a1746288f8f2fae07ba59c5e1547df88ad1e3 (from https://www.piwheels.org/simple/vermouth/) 2024-01-31T16:34:42,555 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.7.2-py2.py3-none-any.whl#sha256=229f973ded59ef7883ba4f6fbfa96540cdf40b1b961b12efdbe7d5cb81fac6a1 (from https://www.piwheels.org/simple/vermouth/) 2024-01-31T16:34:42,555 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.7.1-py2.py3-none-any.whl#sha256=fc70883831d576793246091cafc7b008f187bc4faf6a8e560307ab7481e832f2 (from https://www.piwheels.org/simple/vermouth/) 2024-01-31T16:34:42,556 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.7.0-py2.py3-none-any.whl#sha256=5fca42314e68189e5e41f8e4b1722a1b93e3522c211a4504fa1e329991804768 (from https://www.piwheels.org/simple/vermouth/) 2024-01-31T16:34:42,556 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.6.1.dev1-py2.py3-none-any.whl#sha256=40b89874779133125b2ceda6a869dfaee2f00ebbeb4eab86903eb35cf0f51102 (from https://www.piwheels.org/simple/vermouth/) 2024-01-31T16:34:42,557 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.6.0-py2.py3-none-any.whl#sha256=eacf3828c494728c7a206f78e8b3845eed24ca2f25b522c618260811f03231fe (from https://www.piwheels.org/simple/vermouth/) 2024-01-31T16:34:42,558 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.5.0-py2.py3-none-any.whl#sha256=d2dcb086df80653b9602029af7363d8ba15a3660a9eed6f9d5c62f3156f231d2 (from https://www.piwheels.org/simple/vermouth/) 2024-01-31T16:34:42,558 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.4.1-py2.py3-none-any.whl#sha256=7b29e1249b460cbf99396d25d6b7898d394a4f354f06f4574240f9226aaf70de (from https://www.piwheels.org/simple/vermouth/) 2024-01-31T16:34:42,559 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.4.0-py2.py3-none-any.whl#sha256=1e8e41f2ade8de1b613de4a5fba5a29828bbd23b449c1c6fc503ab0dd52aa61f (from https://www.piwheels.org/simple/vermouth/) 2024-01-31T16:34:42,559 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.3.1-py2.py3-none-any.whl#sha256=3431b025e519118e06c5ccb19b7a28cbf5f40fc6029496521569f2647a0fab3a (from https://www.piwheels.org/simple/vermouth/) 2024-01-31T16:34:42,560 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.3.0-py2.py3-none-any.whl#sha256=164322a4f376c6a503756677793912d937dfb6330f3973c9dc8fdb89eafa44e3 (from https://www.piwheels.org/simple/vermouth/) 2024-01-31T16:34:42,560 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.2.0-py2.py3-none-any.whl#sha256=bc59509223e3450150b291f42032d3cea874b0544820fe778507ccca510f03b5 (from https://www.piwheels.org/simple/vermouth/) 2024-01-31T16:34:42,561 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.1.0-py2.py3-none-any.whl#sha256=28068403a9546c028aca0d749c0401d00d6aa1ec66f1cf8bb91f8e293294cc2e (from https://www.piwheels.org/simple/vermouth/) 2024-01-31T16:34:42,561 Skipping link: not a file: https://www.piwheels.org/simple/vermouth/ 2024-01-31T16:34:42,562 Skipping link: not a file: https://pypi.org/simple/vermouth/ 2024-01-31T16:34:42,583 Given no hashes to check 1 links for project 'vermouth': discarding no candidates 2024-01-31T16:34:42,601 Collecting vermouth==0.10.0 2024-01-31T16:34:42,603 Created temporary directory: /tmp/pip-unpack-5d646_fy 2024-01-31T16:34:42,820 Downloading vermouth-0.10.0.tar.gz (2.7 MB) 2024-01-31T16:34:44,961 Added vermouth==0.10.0 from https://files.pythonhosted.org/packages/03/1e/2e7464d71c5ee0754b900b76dbe4a5f3ac6486a58c1138e36934f97f551e/vermouth-0.10.0.tar.gz to build tracker '/tmp/pip-build-tracker-oa6j4env' 2024-01-31T16:34:44,967 Created temporary directory: /tmp/pip-build-env-p8svhto4 2024-01-31T16:34:44,971 Installing build dependencies: started 2024-01-31T16:34:44,972 Running command pip subprocess to install build dependencies 2024-01-31T16:34:46,099 Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-01-31T16:34:46,610 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-31T16:34:47,098 Collecting wheel 2024-01-31T16:34:47,113 Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB) 2024-01-31T16:34:48,312 Collecting setuptools>=30.3.0 2024-01-31T16:34:48,326 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.0.3-py3-none-any.whl (819 kB) 2024-01-31T16:34:48,525 Collecting pbr 2024-01-31T16:34:48,543 Using cached https://www.piwheels.org/simple/pbr/pbr-6.0.0-py2.py3-none-any.whl (107 kB) 2024-01-31T16:34:51,122 Installing collected packages: wheel, setuptools, pbr 2024-01-31T16:34:51,341 Creating /tmp/pip-build-env-p8svhto4/overlay/local/bin 2024-01-31T16:34:51,343 changing mode of /tmp/pip-build-env-p8svhto4/overlay/local/bin/wheel to 755 2024-01-31T16:34:53,864 changing mode of /tmp/pip-build-env-p8svhto4/overlay/local/bin/pbr to 755 2024-01-31T16:34:53,885 Successfully installed pbr-6.0.0 setuptools-69.0.3 wheel-0.42.0 2024-01-31T16:34:54,155 [notice] A new release of pip is available: 23.3.1 -> 23.3.2 2024-01-31T16:34:54,156 [notice] To update, run: python3 -m pip install --upgrade pip 2024-01-31T16:34:54,431 Installing build dependencies: finished with status 'done' 2024-01-31T16:34:54,445 Getting requirements to build wheel: started 2024-01-31T16:34:54,446 Running command Getting requirements to build wheel 2024-01-31T16:34:54,970 /tmp/pip-build-env-p8svhto4/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:472: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-01-31T16:34:54,970 !! 2024-01-31T16:34:54,971 ******************************************************************************** 2024-01-31T16:34:54,972 Usage of dash-separated 'description-content-type' will not be supported in future 2024-01-31T16:34:54,972 versions. Please use the underscore name 'description_content_type' instead. 2024-01-31T16:34:54,973 By 2024-Sep-26, you need to update your project and remove deprecated calls 2024-01-31T16:34:54,974 or your builds will no longer be supported. 2024-01-31T16:34:54,974 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-01-31T16:34:54,975 ******************************************************************************** 2024-01-31T16:34:54,976 !! 2024-01-31T16:34:54,976 opt = self.warn_dash_deprecation(opt, section) 2024-01-31T16:34:54,984 /tmp/pip-build-env-p8svhto4/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:472: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-01-31T16:34:54,984 !! 2024-01-31T16:34:54,986 ******************************************************************************** 2024-01-31T16:34:54,986 Usage of dash-separated 'setup-requires' will not be supported in future 2024-01-31T16:34:54,987 versions. Please use the underscore name 'setup_requires' instead. 2024-01-31T16:34:54,988 By 2024-Sep-26, you need to update your project and remove deprecated calls 2024-01-31T16:34:54,989 or your builds will no longer be supported. 2024-01-31T16:34:54,990 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-01-31T16:34:54,991 ******************************************************************************** 2024-01-31T16:34:54,992 !! 2024-01-31T16:34:54,992 opt = self.warn_dash_deprecation(opt, section) 2024-01-31T16:34:54,993 /tmp/pip-build-env-p8svhto4/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:472: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-01-31T16:34:54,993 !! 2024-01-31T16:34:54,994 ******************************************************************************** 2024-01-31T16:34:54,995 Usage of dash-separated 'install-requires' will not be supported in future 2024-01-31T16:34:54,996 versions. Please use the underscore name 'install_requires' instead. 2024-01-31T16:34:54,997 By 2024-Sep-26, you need to update your project and remove deprecated calls 2024-01-31T16:34:54,997 or your builds will no longer be supported. 2024-01-31T16:34:54,998 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-01-31T16:34:54,999 ******************************************************************************** 2024-01-31T16:34:55,000 !! 2024-01-31T16:34:55,001 opt = self.warn_dash_deprecation(opt, section) 2024-01-31T16:34:55,002 /tmp/pip-build-env-p8svhto4/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:472: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-01-31T16:34:55,002 !! 2024-01-31T16:34:55,004 ******************************************************************************** 2024-01-31T16:34:55,004 Usage of dash-separated 'zip-safe' will not be supported in future 2024-01-31T16:34:55,005 versions. Please use the underscore name 'zip_safe' instead. 2024-01-31T16:34:55,005 By 2024-Sep-26, you need to update your project and remove deprecated calls 2024-01-31T16:34:55,006 or your builds will no longer be supported. 2024-01-31T16:34:55,007 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-01-31T16:34:55,007 ******************************************************************************** 2024-01-31T16:34:55,008 !! 2024-01-31T16:34:55,009 opt = self.warn_dash_deprecation(opt, section) 2024-01-31T16:34:55,095 Getting requirements to build wheel: finished with status 'done' 2024-01-31T16:34:55,119 Created temporary directory: /tmp/pip-modern-metadata-gl053iw9 2024-01-31T16:34:55,122 Preparing metadata (pyproject.toml): started 2024-01-31T16:34:55,123 Running command Preparing metadata (pyproject.toml) 2024-01-31T16:34:55,840 /tmp/pip-build-env-p8svhto4/overlay/local/lib/python3.11/dist-packages/setuptools/command/develop.py:39: EasyInstallDeprecationWarning: easy_install command is deprecated. 2024-01-31T16:34:55,840 !! 2024-01-31T16:34:55,841 ******************************************************************************** 2024-01-31T16:34:55,841 Please avoid running ``setup.py`` and ``easy_install``. 2024-01-31T16:34:55,842 Instead, use pypa/build, pypa/installer or other 2024-01-31T16:34:55,842 standards-based tools. 2024-01-31T16:34:55,844 See https://github.com/pypa/setuptools/issues/917 for details. 2024-01-31T16:34:55,844 ******************************************************************************** 2024-01-31T16:34:55,845 !! 2024-01-31T16:34:55,846 easy_install.initialize_options(self) 2024-01-31T16:34:55,847 /tmp/pip-build-env-p8svhto4/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-01-31T16:34:55,847 !! 2024-01-31T16:34:55,848 ******************************************************************************** 2024-01-31T16:34:55,849 Please avoid running ``setup.py`` directly. 2024-01-31T16:34:55,849 Instead, use pypa/build, pypa/installer or other 2024-01-31T16:34:55,850 standards-based tools. 2024-01-31T16:34:55,851 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-01-31T16:34:55,852 ******************************************************************************** 2024-01-31T16:34:55,853 !! 2024-01-31T16:34:55,854 self.initialize_options() 2024-01-31T16:34:55,861 /tmp/pip-build-env-p8svhto4/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:472: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-01-31T16:34:55,862 !! 2024-01-31T16:34:55,863 ******************************************************************************** 2024-01-31T16:34:55,863 Usage of dash-separated 'description-content-type' will not be supported in future 2024-01-31T16:34:55,864 versions. Please use the underscore name 'description_content_type' instead. 2024-01-31T16:34:55,865 By 2024-Sep-26, you need to update your project and remove deprecated calls 2024-01-31T16:34:55,865 or your builds will no longer be supported. 2024-01-31T16:34:55,867 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-01-31T16:34:55,867 ******************************************************************************** 2024-01-31T16:34:55,868 !! 2024-01-31T16:34:55,869 opt = self.warn_dash_deprecation(opt, section) 2024-01-31T16:34:55,876 /tmp/pip-build-env-p8svhto4/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:472: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-01-31T16:34:55,877 !! 2024-01-31T16:34:55,877 ******************************************************************************** 2024-01-31T16:34:55,878 Usage of dash-separated 'setup-requires' will not be supported in future 2024-01-31T16:34:55,878 versions. Please use the underscore name 'setup_requires' instead. 2024-01-31T16:34:55,879 By 2024-Sep-26, you need to update your project and remove deprecated calls 2024-01-31T16:34:55,879 or your builds will no longer be supported. 2024-01-31T16:34:55,880 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-01-31T16:34:55,881 ******************************************************************************** 2024-01-31T16:34:55,882 !! 2024-01-31T16:34:55,882 opt = self.warn_dash_deprecation(opt, section) 2024-01-31T16:34:55,882 /tmp/pip-build-env-p8svhto4/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:472: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-01-31T16:34:55,883 !! 2024-01-31T16:34:55,884 ******************************************************************************** 2024-01-31T16:34:55,884 Usage of dash-separated 'install-requires' will not be supported in future 2024-01-31T16:34:55,885 versions. Please use the underscore name 'install_requires' instead. 2024-01-31T16:34:55,885 By 2024-Sep-26, you need to update your project and remove deprecated calls 2024-01-31T16:34:55,886 or your builds will no longer be supported. 2024-01-31T16:34:55,887 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-01-31T16:34:55,887 ******************************************************************************** 2024-01-31T16:34:55,889 !! 2024-01-31T16:34:55,889 opt = self.warn_dash_deprecation(opt, section) 2024-01-31T16:34:55,890 /tmp/pip-build-env-p8svhto4/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:472: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-01-31T16:34:55,890 !! 2024-01-31T16:34:55,891 ******************************************************************************** 2024-01-31T16:34:55,892 Usage of dash-separated 'zip-safe' will not be supported in future 2024-01-31T16:34:55,893 versions. Please use the underscore name 'zip_safe' instead. 2024-01-31T16:34:55,894 By 2024-Sep-26, you need to update your project and remove deprecated calls 2024-01-31T16:34:55,894 or your builds will no longer be supported. 2024-01-31T16:34:55,896 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-01-31T16:34:55,896 ******************************************************************************** 2024-01-31T16:34:55,897 !! 2024-01-31T16:34:55,898 opt = self.warn_dash_deprecation(opt, section) 2024-01-31T16:34:55,923 running dist_info 2024-01-31T16:34:55,925 creating /tmp/pip-modern-metadata-gl053iw9/vermouth.egg-info 2024-01-31T16:34:55,929 writing /tmp/pip-modern-metadata-gl053iw9/vermouth.egg-info/PKG-INFO 2024-01-31T16:34:55,934 writing dependency_links to /tmp/pip-modern-metadata-gl053iw9/vermouth.egg-info/dependency_links.txt 2024-01-31T16:34:55,936 writing requirements to /tmp/pip-modern-metadata-gl053iw9/vermouth.egg-info/requires.txt 2024-01-31T16:34:55,937 writing top-level names to /tmp/pip-modern-metadata-gl053iw9/vermouth.egg-info/top_level.txt 2024-01-31T16:34:55,951 [pbr] Processing SOURCES.txt 2024-01-31T16:34:55,952 writing manifest file '/tmp/pip-modern-metadata-gl053iw9/vermouth.egg-info/SOURCES.txt' 2024-01-31T16:34:56,172 warning: no files found matching 'AUTHORS' 2024-01-31T16:34:56,172 warning: no files found matching 'ChangeLog' 2024-01-31T16:34:56,173 warning: no previously-included files found matching '.gitignore' 2024-01-31T16:34:56,175 warning: no previously-included files found matching '.gitreview' 2024-01-31T16:34:56,177 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2024-01-31T16:34:56,253 adding license file 'LICENSE' 2024-01-31T16:34:56,273 writing manifest file '/tmp/pip-modern-metadata-gl053iw9/vermouth.egg-info/SOURCES.txt' 2024-01-31T16:34:56,276 creating '/tmp/pip-modern-metadata-gl053iw9/vermouth-0.10.0.dist-info' 2024-01-31T16:34:56,342 The [wheel] section is deprecated. Use [bdist_wheel] instead. 2024-01-31T16:34:56,483 Preparing metadata (pyproject.toml): finished with status 'done' 2024-01-31T16:34:56,487 Source in /tmp/pip-wheel-g8efgafm/vermouth_132946545d1f4c11981d4f6d600a7ad5 has version 0.10.0, which satisfies requirement vermouth==0.10.0 from https://files.pythonhosted.org/packages/03/1e/2e7464d71c5ee0754b900b76dbe4a5f3ac6486a58c1138e36934f97f551e/vermouth-0.10.0.tar.gz 2024-01-31T16:34:56,488 Removed vermouth==0.10.0 from https://files.pythonhosted.org/packages/03/1e/2e7464d71c5ee0754b900b76dbe4a5f3ac6486a58c1138e36934f97f551e/vermouth-0.10.0.tar.gz from build tracker '/tmp/pip-build-tracker-oa6j4env' 2024-01-31T16:34:56,492 Created temporary directory: /tmp/pip-unpack-sw_rrmnt 2024-01-31T16:34:56,493 Created temporary directory: /tmp/pip-unpack-drm1rj6v 2024-01-31T16:34:56,504 Building wheels for collected packages: vermouth 2024-01-31T16:34:56,508 Created temporary directory: /tmp/pip-wheel-7tdsmxkn 2024-01-31T16:34:56,508 Destination directory: /tmp/pip-wheel-7tdsmxkn 2024-01-31T16:34:56,510 Building wheel for vermouth (pyproject.toml): started 2024-01-31T16:34:56,511 Running command Building wheel for vermouth (pyproject.toml) 2024-01-31T16:34:57,171 /tmp/pip-build-env-p8svhto4/overlay/local/lib/python3.11/dist-packages/setuptools/command/develop.py:39: EasyInstallDeprecationWarning: easy_install command is deprecated. 2024-01-31T16:34:57,172 !! 2024-01-31T16:34:57,173 ******************************************************************************** 2024-01-31T16:34:57,173 Please avoid running ``setup.py`` and ``easy_install``. 2024-01-31T16:34:57,174 Instead, use pypa/build, pypa/installer or other 2024-01-31T16:34:57,175 standards-based tools. 2024-01-31T16:34:57,176 See https://github.com/pypa/setuptools/issues/917 for details. 2024-01-31T16:34:57,176 ******************************************************************************** 2024-01-31T16:34:57,177 !! 2024-01-31T16:34:57,178 easy_install.initialize_options(self) 2024-01-31T16:34:57,187 /tmp/pip-build-env-p8svhto4/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:472: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-01-31T16:34:57,188 !! 2024-01-31T16:34:57,189 ******************************************************************************** 2024-01-31T16:34:57,190 Usage of dash-separated 'description-content-type' will not be supported in future 2024-01-31T16:34:57,190 versions. Please use the underscore name 'description_content_type' instead. 2024-01-31T16:34:57,191 By 2024-Sep-26, you need to update your project and remove deprecated calls 2024-01-31T16:34:57,192 or your builds will no longer be supported. 2024-01-31T16:34:57,193 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-01-31T16:34:57,194 ******************************************************************************** 2024-01-31T16:34:57,195 !! 2024-01-31T16:34:57,195 opt = self.warn_dash_deprecation(opt, section) 2024-01-31T16:34:57,200 /tmp/pip-build-env-p8svhto4/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:472: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-01-31T16:34:57,201 !! 2024-01-31T16:34:57,202 ******************************************************************************** 2024-01-31T16:34:57,203 Usage of dash-separated 'setup-requires' will not be supported in future 2024-01-31T16:34:57,203 versions. Please use the underscore name 'setup_requires' instead. 2024-01-31T16:34:57,204 By 2024-Sep-26, you need to update your project and remove deprecated calls 2024-01-31T16:34:57,205 or your builds will no longer be supported. 2024-01-31T16:34:57,206 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-01-31T16:34:57,206 ******************************************************************************** 2024-01-31T16:34:57,207 !! 2024-01-31T16:34:57,207 opt = self.warn_dash_deprecation(opt, section) 2024-01-31T16:34:57,208 /tmp/pip-build-env-p8svhto4/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:472: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-01-31T16:34:57,208 !! 2024-01-31T16:34:57,209 ******************************************************************************** 2024-01-31T16:34:57,210 Usage of dash-separated 'install-requires' will not be supported in future 2024-01-31T16:34:57,210 versions. Please use the underscore name 'install_requires' instead. 2024-01-31T16:34:57,211 By 2024-Sep-26, you need to update your project and remove deprecated calls 2024-01-31T16:34:57,211 or your builds will no longer be supported. 2024-01-31T16:34:57,212 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-01-31T16:34:57,213 ******************************************************************************** 2024-01-31T16:34:57,214 !! 2024-01-31T16:34:57,214 opt = self.warn_dash_deprecation(opt, section) 2024-01-31T16:34:57,215 /tmp/pip-build-env-p8svhto4/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:472: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-01-31T16:34:57,215 !! 2024-01-31T16:34:57,216 ******************************************************************************** 2024-01-31T16:34:57,217 Usage of dash-separated 'zip-safe' will not be supported in future 2024-01-31T16:34:57,217 versions. Please use the underscore name 'zip_safe' instead. 2024-01-31T16:34:57,218 By 2024-Sep-26, you need to update your project and remove deprecated calls 2024-01-31T16:34:57,219 or your builds will no longer be supported. 2024-01-31T16:34:57,220 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-01-31T16:34:57,220 ******************************************************************************** 2024-01-31T16:34:57,222 !! 2024-01-31T16:34:57,222 opt = self.warn_dash_deprecation(opt, section) 2024-01-31T16:34:57,291 running bdist_wheel 2024-01-31T16:34:57,300 The [wheel] section is deprecated. Use [bdist_wheel] instead. 2024-01-31T16:34:57,315 running build 2024-01-31T16:34:57,316 running build_py 2024-01-31T16:34:57,324 creating build 2024-01-31T16:34:57,325 creating build/lib 2024-01-31T16:34:57,325 creating build/lib/vermouth 2024-01-31T16:34:57,326 creating build/lib/vermouth/gmx 2024-01-31T16:34:57,327 copying vermouth/gmx/rtp.py -> build/lib/vermouth/gmx 2024-01-31T16:34:57,330 copying vermouth/gmx/itp.py -> build/lib/vermouth/gmx 2024-01-31T16:34:57,332 copying vermouth/gmx/gro.py -> build/lib/vermouth/gmx 2024-01-31T16:34:57,334 copying vermouth/gmx/topology.py -> build/lib/vermouth/gmx 2024-01-31T16:34:57,336 copying vermouth/gmx/itp_read.py -> build/lib/vermouth/gmx 2024-01-31T16:34:57,339 copying vermouth/gmx/__init__.py -> build/lib/vermouth/gmx 2024-01-31T16:34:57,342 creating build/lib/vermouth/processors 2024-01-31T16:34:57,343 copying vermouth/processors/do_links.py -> build/lib/vermouth/processors 2024-01-31T16:34:57,345 copying vermouth/processors/gro_reader.py -> build/lib/vermouth/processors 2024-01-31T16:34:57,347 copying vermouth/processors/make_bonds.py -> build/lib/vermouth/processors 2024-01-31T16:34:57,349 copying vermouth/processors/repair_graph.py -> build/lib/vermouth/processors 2024-01-31T16:34:57,352 copying vermouth/processors/do_mapping.py -> build/lib/vermouth/processors 2024-01-31T16:34:57,355 copying vermouth/processors/apply_rubber_band.py -> build/lib/vermouth/processors 2024-01-31T16:34:57,357 copying vermouth/processors/rename_modified_residues.py -> build/lib/vermouth/processors 2024-01-31T16:34:57,359 copying vermouth/processors/quote.py -> build/lib/vermouth/processors 2024-01-31T16:34:57,361 copying vermouth/processors/canonicalize_modifications.py -> build/lib/vermouth/processors 2024-01-31T16:34:57,363 copying vermouth/processors/locate_charge_dummies.py -> build/lib/vermouth/processors 2024-01-31T16:34:57,364 copying vermouth/processors/merge_all_molecules.py -> build/lib/vermouth/processors 2024-01-31T16:34:57,366 copying vermouth/processors/water_bias.py -> build/lib/vermouth/processors 2024-01-31T16:34:57,368 copying vermouth/processors/average_beads.py -> build/lib/vermouth/processors 2024-01-31T16:34:57,370 copying vermouth/processors/attach_mass.py -> build/lib/vermouth/processors 2024-01-31T16:34:57,371 copying vermouth/processors/name_moltype.py -> build/lib/vermouth/processors 2024-01-31T16:34:57,373 copying vermouth/processors/pdb_reader.py -> build/lib/vermouth/processors 2024-01-31T16:34:57,374 copying vermouth/processors/apply_posres.py -> build/lib/vermouth/processors 2024-01-31T16:34:57,376 copying vermouth/processors/set_molecule_meta.py -> build/lib/vermouth/processors 2024-01-31T16:34:57,378 copying vermouth/processors/add_molecule_edges.py -> build/lib/vermouth/processors 2024-01-31T16:34:57,379 copying vermouth/processors/processor.py -> build/lib/vermouth/processors 2024-01-31T16:34:57,381 copying vermouth/processors/tune_cystein_bridges.py -> build/lib/vermouth/processors 2024-01-31T16:34:57,383 copying vermouth/processors/merge_chains.py -> build/lib/vermouth/processors 2024-01-31T16:34:57,384 copying vermouth/processors/sort_molecule_atoms.py -> build/lib/vermouth/processors 2024-01-31T16:34:57,386 copying vermouth/processors/annotate_mut_mod.py -> build/lib/vermouth/processors 2024-01-31T16:34:57,388 copying vermouth/processors/__init__.py -> build/lib/vermouth/processors 2024-01-31T16:34:57,390 creating build/lib/vermouth/tests 2024-01-31T16:34:57,391 creating build/lib/vermouth/tests/integration_tests 2024-01-31T16:34:57,392 copying vermouth/tests/integration_tests/test_integration.py -> build/lib/vermouth/tests/integration_tests 2024-01-31T16:34:57,394 copying vermouth/tests/integration_tests/__init__.py -> build/lib/vermouth/tests/integration_tests 2024-01-31T16:34:57,396 creating build/lib/vermouth/dssp 2024-01-31T16:34:57,397 copying vermouth/dssp/dssp.py -> build/lib/vermouth/dssp 2024-01-31T16:34:57,400 copying vermouth/dssp/__init__.py -> build/lib/vermouth/dssp 2024-01-31T16:34:57,403 copying vermouth/tests/test_native_forcefield.py -> build/lib/vermouth/tests 2024-01-31T16:34:57,405 copying vermouth/tests/molecule_strategies.py -> build/lib/vermouth/tests 2024-01-31T16:34:57,407 copying vermouth/tests/test_average_beads.py -> build/lib/vermouth/tests 2024-01-31T16:34:57,409 copying vermouth/tests/test_map_parser.py -> build/lib/vermouth/tests 2024-01-31T16:34:57,411 copying vermouth/tests/test_mapping_integrative.py -> build/lib/vermouth/tests 2024-01-31T16:34:57,413 copying vermouth/tests/test_grappa.py -> build/lib/vermouth/tests 2024-01-31T16:34:57,416 copying vermouth/tests/test_dssp.py -> build/lib/vermouth/tests 2024-01-31T16:34:57,418 copying vermouth/tests/test_logging.py -> build/lib/vermouth/tests 2024-01-31T16:34:57,420 copying vermouth/tests/test_vs_generation.py -> build/lib/vermouth/tests 2024-01-31T16:34:57,422 copying vermouth/tests/test_water_bias.py -> build/lib/vermouth/tests 2024-01-31T16:34:57,424 copying vermouth/tests/test_apply_rubber_band.py -> build/lib/vermouth/tests 2024-01-31T16:34:57,427 copying vermouth/tests/test_version.py -> build/lib/vermouth/tests 2024-01-31T16:34:57,428 copying vermouth/tests/test_links.py -> build/lib/vermouth/tests 2024-01-31T16:34:57,430 copying vermouth/tests/test_sort_molecule_atoms.py -> build/lib/vermouth/tests 2024-01-31T16:34:57,432 copying vermouth/tests/datafiles.py -> build/lib/vermouth/tests 2024-01-31T16:34:57,434 copying vermouth/tests/test_annotate_mut_mod.py -> build/lib/vermouth/tests 2024-01-31T16:34:57,436 copying vermouth/tests/test_itp_files.py -> build/lib/vermouth/tests 2024-01-31T16:34:57,438 copying vermouth/tests/test_tune_cystein_bridges.py -> build/lib/vermouth/tests 2024-01-31T16:34:57,440 copying vermouth/tests/test_ptm_detection.py -> build/lib/vermouth/tests 2024-01-31T16:34:57,442 copying vermouth/tests/test_graph_utils.py -> build/lib/vermouth/tests 2024-01-31T16:34:57,445 copying vermouth/tests/test_map_input.py -> build/lib/vermouth/tests 2024-01-31T16:34:57,447 copying vermouth/tests/test_make_bonds.py -> build/lib/vermouth/tests 2024-01-31T16:34:57,449 copying vermouth/tests/test_ffinput.py -> build/lib/vermouth/tests 2024-01-31T16:34:57,452 copying vermouth/tests/test_utils.py -> build/lib/vermouth/tests 2024-01-31T16:34:57,454 copying vermouth/tests/test_ff_files.py -> build/lib/vermouth/tests 2024-01-31T16:34:57,456 copying vermouth/tests/helper_functions.py -> build/lib/vermouth/tests 2024-01-31T16:34:57,458 copying vermouth/tests/test_section_parser.py -> build/lib/vermouth/tests 2024-01-31T16:34:57,460 copying vermouth/tests/test_file_writer.py -> build/lib/vermouth/tests 2024-01-31T16:34:57,462 copying vermouth/tests/test_repair_graph.py -> build/lib/vermouth/tests 2024-01-31T16:34:57,464 copying vermouth/tests/test_do_mapping.py -> build/lib/vermouth/tests 2024-01-31T16:34:57,467 copying vermouth/tests/test_add_molecule_edges.py -> build/lib/vermouth/tests 2024-01-31T16:34:57,469 copying vermouth/tests/test_selectors.py -> build/lib/vermouth/tests 2024-01-31T16:34:57,471 copying vermouth/tests/test_set_molecule_meta.py -> build/lib/vermouth/tests 2024-01-31T16:34:57,473 copying vermouth/tests/test_ismags.py -> build/lib/vermouth/tests 2024-01-31T16:34:57,475 copying vermouth/tests/__init__.py -> build/lib/vermouth/tests 2024-01-31T16:34:57,477 copying vermouth/tests/test_name_moltype.py -> build/lib/vermouth/tests 2024-01-31T16:34:57,479 copying vermouth/tests/test_edge_tuning.py -> build/lib/vermouth/tests 2024-01-31T16:34:57,481 copying vermouth/tests/test_forcefield.py -> build/lib/vermouth/tests 2024-01-31T16:34:57,483 copying vermouth/tests/test_molecule.py -> build/lib/vermouth/tests 2024-01-31T16:34:57,486 copying vermouth/tests/test_geometry.py -> build/lib/vermouth/tests 2024-01-31T16:34:57,489 creating build/lib/vermouth/rcsu 2024-01-31T16:34:57,490 copying vermouth/rcsu/go_utils.py -> build/lib/vermouth/rcsu 2024-01-31T16:34:57,492 copying vermouth/rcsu/go_vs_includes.py -> build/lib/vermouth/rcsu 2024-01-31T16:34:57,494 copying vermouth/rcsu/go_structure_bias.py -> build/lib/vermouth/rcsu 2024-01-31T16:34:57,496 copying vermouth/rcsu/contact_map.py -> build/lib/vermouth/rcsu 2024-01-31T16:34:57,498 copying vermouth/rcsu/go_pipeline.py -> build/lib/vermouth/rcsu 2024-01-31T16:34:57,500 copying vermouth/rcsu/__init__.py -> build/lib/vermouth/rcsu 2024-01-31T16:34:57,503 copying vermouth/edge_tuning.py -> build/lib/vermouth 2024-01-31T16:34:57,505 copying vermouth/molecule.py -> build/lib/vermouth 2024-01-31T16:34:57,509 copying vermouth/map_input.py -> build/lib/vermouth 2024-01-31T16:34:57,511 copying vermouth/citation_parser.py -> build/lib/vermouth 2024-01-31T16:34:57,513 copying vermouth/system.py -> build/lib/vermouth 2024-01-31T16:34:57,516 copying vermouth/forcefield.py -> build/lib/vermouth 2024-01-31T16:34:57,518 copying vermouth/ffinput.py -> build/lib/vermouth 2024-01-31T16:34:57,521 copying vermouth/file_writer.py -> build/lib/vermouth 2024-01-31T16:34:57,523 copying vermouth/ismags.py -> build/lib/vermouth 2024-01-31T16:34:57,527 copying vermouth/map_parser.py -> build/lib/vermouth 2024-01-31T16:34:57,530 copying vermouth/graph_utils.py -> build/lib/vermouth 2024-01-31T16:34:57,532 copying vermouth/truncating_formatter.py -> build/lib/vermouth 2024-01-31T16:34:57,535 copying vermouth/geometry.py -> build/lib/vermouth 2024-01-31T16:34:57,537 copying vermouth/utils.py -> build/lib/vermouth 2024-01-31T16:34:57,539 copying vermouth/parser_utils.py -> build/lib/vermouth 2024-01-31T16:34:57,542 copying vermouth/__init__.py -> build/lib/vermouth 2024-01-31T16:34:57,544 copying vermouth/log_helpers.py -> build/lib/vermouth 2024-01-31T16:34:57,546 copying vermouth/selectors.py -> build/lib/vermouth 2024-01-31T16:34:57,549 creating build/lib/vermouth/pdb 2024-01-31T16:34:57,550 copying vermouth/pdb/pdb.py -> build/lib/vermouth/pdb 2024-01-31T16:34:57,553 copying vermouth/pdb/__init__.py -> build/lib/vermouth/pdb 2024-01-31T16:34:57,555 running egg_info 2024-01-31T16:34:57,560 writing vermouth.egg-info/PKG-INFO 2024-01-31T16:34:57,565 writing dependency_links to vermouth.egg-info/dependency_links.txt 2024-01-31T16:34:57,567 writing requirements to vermouth.egg-info/requires.txt 2024-01-31T16:34:57,568 writing top-level names to vermouth.egg-info/top_level.txt 2024-01-31T16:34:57,582 [pbr] Reusing existing SOURCES.txt 2024-01-31T16:34:57,598 /tmp/pip-build-env-p8svhto4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'vermouth.data' is absent from the `packages` configuration. 2024-01-31T16:34:57,599 !! 2024-01-31T16:34:57,600 ******************************************************************************** 2024-01-31T16:34:57,600 ############################ 2024-01-31T16:34:57,601 # Package would be ignored # 2024-01-31T16:34:57,601 ############################ 2024-01-31T16:34:57,601 Python recognizes 'vermouth.data' as an importable package[^1], 2024-01-31T16:34:57,602 but it is absent from setuptools' `packages` configuration. 2024-01-31T16:34:57,603 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-31T16:34:57,603 package, please make sure that 'vermouth.data' is explicitly added 2024-01-31T16:34:57,604 to the `packages` configuration field. 2024-01-31T16:34:57,605 Alternatively, you can also rely on setuptools' discovery methods 2024-01-31T16:34:57,605 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-31T16:34:57,606 instead of `find_packages(...)`/`find:`). 2024-01-31T16:34:57,607 You can read more about "package discovery" on setuptools documentation page: 2024-01-31T16:34:57,608 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-31T16:34:57,609 If you don't want 'vermouth.data' to be distributed and are 2024-01-31T16:34:57,610 already explicitly excluding 'vermouth.data' via 2024-01-31T16:34:57,610 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-31T16:34:57,611 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-31T16:34:57,612 combination with a more fine grained `package-data` configuration. 2024-01-31T16:34:57,613 You can read more about "package data files" on setuptools documentation page: 2024-01-31T16:34:57,614 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-31T16:34:57,615 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-31T16:34:57,616 even if it does not contain any `.py` files. 2024-01-31T16:34:57,617 On the other hand, currently there is no concept of package data 2024-01-31T16:34:57,617 directory, all directories are treated like packages. 2024-01-31T16:34:57,618 ******************************************************************************** 2024-01-31T16:34:57,619 !! 2024-01-31T16:34:57,620 check.warn(importable) 2024-01-31T16:34:57,620 /tmp/pip-build-env-p8svhto4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'vermouth.data.force_fields.amber' is absent from the `packages` configuration. 2024-01-31T16:34:57,621 !! 2024-01-31T16:34:57,622 ******************************************************************************** 2024-01-31T16:34:57,622 ############################ 2024-01-31T16:34:57,623 # Package would be ignored # 2024-01-31T16:34:57,623 ############################ 2024-01-31T16:34:57,623 Python recognizes 'vermouth.data.force_fields.amber' as an importable package[^1], 2024-01-31T16:34:57,624 but it is absent from setuptools' `packages` configuration. 2024-01-31T16:34:57,625 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-31T16:34:57,625 package, please make sure that 'vermouth.data.force_fields.amber' is explicitly added 2024-01-31T16:34:57,625 to the `packages` configuration field. 2024-01-31T16:34:57,626 Alternatively, you can also rely on setuptools' discovery methods 2024-01-31T16:34:57,627 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-31T16:34:57,627 instead of `find_packages(...)`/`find:`). 2024-01-31T16:34:57,628 You can read more about "package discovery" on setuptools documentation page: 2024-01-31T16:34:57,629 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-31T16:34:57,630 If you don't want 'vermouth.data.force_fields.amber' to be distributed and are 2024-01-31T16:34:57,631 already explicitly excluding 'vermouth.data.force_fields.amber' via 2024-01-31T16:34:57,631 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-31T16:34:57,632 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-31T16:34:57,633 combination with a more fine grained `package-data` configuration. 2024-01-31T16:34:57,634 You can read more about "package data files" on setuptools documentation page: 2024-01-31T16:34:57,635 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-31T16:34:57,637 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-31T16:34:57,638 even if it does not contain any `.py` files. 2024-01-31T16:34:57,638 On the other hand, currently there is no concept of package data 2024-01-31T16:34:57,639 directory, all directories are treated like packages. 2024-01-31T16:34:57,639 ******************************************************************************** 2024-01-31T16:34:57,641 !! 2024-01-31T16:34:57,641 check.warn(importable) 2024-01-31T16:34:57,642 /tmp/pip-build-env-p8svhto4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'vermouth.data.force_fields.charmm' is absent from the `packages` configuration. 2024-01-31T16:34:57,642 !! 2024-01-31T16:34:57,643 ******************************************************************************** 2024-01-31T16:34:57,644 ############################ 2024-01-31T16:34:57,644 # Package would be ignored # 2024-01-31T16:34:57,645 ############################ 2024-01-31T16:34:57,645 Python recognizes 'vermouth.data.force_fields.charmm' as an importable package[^1], 2024-01-31T16:34:57,646 but it is absent from setuptools' `packages` configuration. 2024-01-31T16:34:57,647 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-31T16:34:57,647 package, please make sure that 'vermouth.data.force_fields.charmm' is explicitly added 2024-01-31T16:34:57,648 to the `packages` configuration field. 2024-01-31T16:34:57,649 Alternatively, you can also rely on setuptools' discovery methods 2024-01-31T16:34:57,649 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-31T16:34:57,650 instead of `find_packages(...)`/`find:`). 2024-01-31T16:34:57,650 You can read more about "package discovery" on setuptools documentation page: 2024-01-31T16:34:57,651 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-31T16:34:57,652 If you don't want 'vermouth.data.force_fields.charmm' to be distributed and are 2024-01-31T16:34:57,652 already explicitly excluding 'vermouth.data.force_fields.charmm' via 2024-01-31T16:34:57,653 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-31T16:34:57,653 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-31T16:34:57,653 combination with a more fine grained `package-data` configuration. 2024-01-31T16:34:57,654 You can read more about "package data files" on setuptools documentation page: 2024-01-31T16:34:57,655 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-31T16:34:57,656 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-31T16:34:57,656 even if it does not contain any `.py` files. 2024-01-31T16:34:57,656 On the other hand, currently there is no concept of package data 2024-01-31T16:34:57,657 directory, all directories are treated like packages. 2024-01-31T16:34:57,657 ******************************************************************************** 2024-01-31T16:34:57,658 !! 2024-01-31T16:34:57,659 check.warn(importable) 2024-01-31T16:34:57,659 /tmp/pip-build-env-p8svhto4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'vermouth.data.force_fields.elnedyn21' is absent from the `packages` configuration. 2024-01-31T16:34:57,660 !! 2024-01-31T16:34:57,661 ******************************************************************************** 2024-01-31T16:34:57,661 ############################ 2024-01-31T16:34:57,662 # Package would be ignored # 2024-01-31T16:34:57,662 ############################ 2024-01-31T16:34:57,663 Python recognizes 'vermouth.data.force_fields.elnedyn21' as an importable package[^1], 2024-01-31T16:34:57,663 but it is absent from setuptools' `packages` configuration. 2024-01-31T16:34:57,664 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-31T16:34:57,665 package, please make sure that 'vermouth.data.force_fields.elnedyn21' is explicitly added 2024-01-31T16:34:57,665 to the `packages` configuration field. 2024-01-31T16:34:57,666 Alternatively, you can also rely on setuptools' discovery methods 2024-01-31T16:34:57,666 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-31T16:34:57,667 instead of `find_packages(...)`/`find:`). 2024-01-31T16:34:57,668 You can read more about "package discovery" on setuptools documentation page: 2024-01-31T16:34:57,669 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-31T16:34:57,670 If you don't want 'vermouth.data.force_fields.elnedyn21' to be distributed and are 2024-01-31T16:34:57,670 already explicitly excluding 'vermouth.data.force_fields.elnedyn21' via 2024-01-31T16:34:57,671 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-31T16:34:57,671 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-31T16:34:57,672 combination with a more fine grained `package-data` configuration. 2024-01-31T16:34:57,673 You can read more about "package data files" on setuptools documentation page: 2024-01-31T16:34:57,674 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-31T16:34:57,675 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-31T16:34:57,675 even if it does not contain any `.py` files. 2024-01-31T16:34:57,676 On the other hand, currently there is no concept of package data 2024-01-31T16:34:57,676 directory, all directories are treated like packages. 2024-01-31T16:34:57,676 ******************************************************************************** 2024-01-31T16:34:57,677 !! 2024-01-31T16:34:57,678 check.warn(importable) 2024-01-31T16:34:57,678 /tmp/pip-build-env-p8svhto4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'vermouth.data.force_fields.elnedyn22' is absent from the `packages` configuration. 2024-01-31T16:34:57,678 !! 2024-01-31T16:34:57,679 ******************************************************************************** 2024-01-31T16:34:57,679 ############################ 2024-01-31T16:34:57,680 # Package would be ignored # 2024-01-31T16:34:57,680 ############################ 2024-01-31T16:34:57,680 Python recognizes 'vermouth.data.force_fields.elnedyn22' as an importable package[^1], 2024-01-31T16:34:57,681 but it is absent from setuptools' `packages` configuration. 2024-01-31T16:34:57,681 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-31T16:34:57,682 package, please make sure that 'vermouth.data.force_fields.elnedyn22' is explicitly added 2024-01-31T16:34:57,682 to the `packages` configuration field. 2024-01-31T16:34:57,683 Alternatively, you can also rely on setuptools' discovery methods 2024-01-31T16:34:57,684 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-31T16:34:57,684 instead of `find_packages(...)`/`find:`). 2024-01-31T16:34:57,685 You can read more about "package discovery" on setuptools documentation page: 2024-01-31T16:34:57,686 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-31T16:34:57,687 If you don't want 'vermouth.data.force_fields.elnedyn22' to be distributed and are 2024-01-31T16:34:57,688 already explicitly excluding 'vermouth.data.force_fields.elnedyn22' via 2024-01-31T16:34:57,688 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-31T16:34:57,689 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-31T16:34:57,689 combination with a more fine grained `package-data` configuration. 2024-01-31T16:34:57,691 You can read more about "package data files" on setuptools documentation page: 2024-01-31T16:34:57,692 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-31T16:34:57,693 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-31T16:34:57,694 even if it does not contain any `.py` files. 2024-01-31T16:34:57,694 On the other hand, currently there is no concept of package data 2024-01-31T16:34:57,695 directory, all directories are treated like packages. 2024-01-31T16:34:57,695 ******************************************************************************** 2024-01-31T16:34:57,696 !! 2024-01-31T16:34:57,697 check.warn(importable) 2024-01-31T16:34:57,697 /tmp/pip-build-env-p8svhto4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'vermouth.data.force_fields.elnedyn22p' is absent from the `packages` configuration. 2024-01-31T16:34:57,698 !! 2024-01-31T16:34:57,699 ******************************************************************************** 2024-01-31T16:34:57,700 ############################ 2024-01-31T16:34:57,700 # Package would be ignored # 2024-01-31T16:34:57,701 ############################ 2024-01-31T16:34:57,702 Python recognizes 'vermouth.data.force_fields.elnedyn22p' as an importable package[^1], 2024-01-31T16:34:57,702 but it is absent from setuptools' `packages` configuration. 2024-01-31T16:34:57,703 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-31T16:34:57,703 package, please make sure that 'vermouth.data.force_fields.elnedyn22p' is explicitly added 2024-01-31T16:34:57,703 to the `packages` configuration field. 2024-01-31T16:34:57,704 Alternatively, you can also rely on setuptools' discovery methods 2024-01-31T16:34:57,705 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-31T16:34:57,705 instead of `find_packages(...)`/`find:`). 2024-01-31T16:34:57,706 You can read more about "package discovery" on setuptools documentation page: 2024-01-31T16:34:57,706 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-31T16:34:57,707 If you don't want 'vermouth.data.force_fields.elnedyn22p' to be distributed and are 2024-01-31T16:34:57,708 already explicitly excluding 'vermouth.data.force_fields.elnedyn22p' via 2024-01-31T16:34:57,708 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-31T16:34:57,708 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-31T16:34:57,709 combination with a more fine grained `package-data` configuration. 2024-01-31T16:34:57,710 You can read more about "package data files" on setuptools documentation page: 2024-01-31T16:34:57,711 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-31T16:34:57,713 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-31T16:34:57,713 even if it does not contain any `.py` files. 2024-01-31T16:34:57,713 On the other hand, currently there is no concept of package data 2024-01-31T16:34:57,714 directory, all directories are treated like packages. 2024-01-31T16:34:57,714 ******************************************************************************** 2024-01-31T16:34:57,716 !! 2024-01-31T16:34:57,716 check.warn(importable) 2024-01-31T16:34:57,717 /tmp/pip-build-env-p8svhto4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'vermouth.data.force_fields.gromos' is absent from the `packages` configuration. 2024-01-31T16:34:57,717 !! 2024-01-31T16:34:57,718 ******************************************************************************** 2024-01-31T16:34:57,719 ############################ 2024-01-31T16:34:57,719 # Package would be ignored # 2024-01-31T16:34:57,720 ############################ 2024-01-31T16:34:57,720 Python recognizes 'vermouth.data.force_fields.gromos' as an importable package[^1], 2024-01-31T16:34:57,721 but it is absent from setuptools' `packages` configuration. 2024-01-31T16:34:57,722 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-31T16:34:57,722 package, please make sure that 'vermouth.data.force_fields.gromos' is explicitly added 2024-01-31T16:34:57,723 to the `packages` configuration field. 2024-01-31T16:34:57,724 Alternatively, you can also rely on setuptools' discovery methods 2024-01-31T16:34:57,724 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-31T16:34:57,725 instead of `find_packages(...)`/`find:`). 2024-01-31T16:34:57,726 You can read more about "package discovery" on setuptools documentation page: 2024-01-31T16:34:57,727 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-31T16:34:57,728 If you don't want 'vermouth.data.force_fields.gromos' to be distributed and are 2024-01-31T16:34:57,728 already explicitly excluding 'vermouth.data.force_fields.gromos' via 2024-01-31T16:34:57,729 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-31T16:34:57,729 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-31T16:34:57,729 combination with a more fine grained `package-data` configuration. 2024-01-31T16:34:57,730 You can read more about "package data files" on setuptools documentation page: 2024-01-31T16:34:57,731 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-31T16:34:57,732 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-31T16:34:57,732 even if it does not contain any `.py` files. 2024-01-31T16:34:57,733 On the other hand, currently there is no concept of package data 2024-01-31T16:34:57,733 directory, all directories are treated like packages. 2024-01-31T16:34:57,733 ******************************************************************************** 2024-01-31T16:34:57,734 !! 2024-01-31T16:34:57,734 check.warn(importable) 2024-01-31T16:34:57,735 /tmp/pip-build-env-p8svhto4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'vermouth.data.force_fields.martini22' is absent from the `packages` configuration. 2024-01-31T16:34:57,735 !! 2024-01-31T16:34:57,736 ******************************************************************************** 2024-01-31T16:34:57,736 ############################ 2024-01-31T16:34:57,737 # Package would be ignored # 2024-01-31T16:34:57,737 ############################ 2024-01-31T16:34:57,738 Python recognizes 'vermouth.data.force_fields.martini22' as an importable package[^1], 2024-01-31T16:34:57,738 but it is absent from setuptools' `packages` configuration. 2024-01-31T16:34:57,740 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-31T16:34:57,740 package, please make sure that 'vermouth.data.force_fields.martini22' is explicitly added 2024-01-31T16:34:57,741 to the `packages` configuration field. 2024-01-31T16:34:57,742 Alternatively, you can also rely on setuptools' discovery methods 2024-01-31T16:34:57,742 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-31T16:34:57,743 instead of `find_packages(...)`/`find:`). 2024-01-31T16:34:57,744 You can read more about "package discovery" on setuptools documentation page: 2024-01-31T16:34:57,745 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-31T16:34:57,746 If you don't want 'vermouth.data.force_fields.martini22' to be distributed and are 2024-01-31T16:34:57,747 already explicitly excluding 'vermouth.data.force_fields.martini22' via 2024-01-31T16:34:57,747 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-31T16:34:57,747 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-31T16:34:57,748 combination with a more fine grained `package-data` configuration. 2024-01-31T16:34:57,749 You can read more about "package data files" on setuptools documentation page: 2024-01-31T16:34:57,750 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-31T16:34:57,752 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-31T16:34:57,752 even if it does not contain any `.py` files. 2024-01-31T16:34:57,753 On the other hand, currently there is no concept of package data 2024-01-31T16:34:57,753 directory, all directories are treated like packages. 2024-01-31T16:34:57,754 ******************************************************************************** 2024-01-31T16:34:57,755 !! 2024-01-31T16:34:57,755 check.warn(importable) 2024-01-31T16:34:57,755 /tmp/pip-build-env-p8svhto4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'vermouth.data.force_fields.martini22p' is absent from the `packages` configuration. 2024-01-31T16:34:57,756 !! 2024-01-31T16:34:57,756 ******************************************************************************** 2024-01-31T16:34:57,757 ############################ 2024-01-31T16:34:57,757 # Package would be ignored # 2024-01-31T16:34:57,757 ############################ 2024-01-31T16:34:57,758 Python recognizes 'vermouth.data.force_fields.martini22p' as an importable package[^1], 2024-01-31T16:34:57,758 but it is absent from setuptools' `packages` configuration. 2024-01-31T16:34:57,759 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-31T16:34:57,759 package, please make sure that 'vermouth.data.force_fields.martini22p' is explicitly added 2024-01-31T16:34:57,760 to the `packages` configuration field. 2024-01-31T16:34:57,760 Alternatively, you can also rely on setuptools' discovery methods 2024-01-31T16:34:57,761 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-31T16:34:57,761 instead of `find_packages(...)`/`find:`). 2024-01-31T16:34:57,762 You can read more about "package discovery" on setuptools documentation page: 2024-01-31T16:34:57,763 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-31T16:34:57,764 If you don't want 'vermouth.data.force_fields.martini22p' to be distributed and are 2024-01-31T16:34:57,765 already explicitly excluding 'vermouth.data.force_fields.martini22p' via 2024-01-31T16:34:57,765 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-31T16:34:57,766 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-31T16:34:57,766 combination with a more fine grained `package-data` configuration. 2024-01-31T16:34:57,767 You can read more about "package data files" on setuptools documentation page: 2024-01-31T16:34:57,768 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-31T16:34:57,770 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-31T16:34:57,771 even if it does not contain any `.py` files. 2024-01-31T16:34:57,771 On the other hand, currently there is no concept of package data 2024-01-31T16:34:57,772 directory, all directories are treated like packages. 2024-01-31T16:34:57,772 ******************************************************************************** 2024-01-31T16:34:57,773 !! 2024-01-31T16:34:57,774 check.warn(importable) 2024-01-31T16:34:57,774 /tmp/pip-build-env-p8svhto4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'vermouth.data.force_fields.martini3001' is absent from the `packages` configuration. 2024-01-31T16:34:57,775 !! 2024-01-31T16:34:57,776 ******************************************************************************** 2024-01-31T16:34:57,776 ############################ 2024-01-31T16:34:57,777 # Package would be ignored # 2024-01-31T16:34:57,777 ############################ 2024-01-31T16:34:57,778 Python recognizes 'vermouth.data.force_fields.martini3001' as an importable package[^1], 2024-01-31T16:34:57,778 but it is absent from setuptools' `packages` configuration. 2024-01-31T16:34:57,779 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-31T16:34:57,780 package, please make sure that 'vermouth.data.force_fields.martini3001' is explicitly added 2024-01-31T16:34:57,781 to the `packages` configuration field. 2024-01-31T16:34:57,782 Alternatively, you can also rely on setuptools' discovery methods 2024-01-31T16:34:57,782 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-31T16:34:57,782 instead of `find_packages(...)`/`find:`). 2024-01-31T16:34:57,783 You can read more about "package discovery" on setuptools documentation page: 2024-01-31T16:34:57,784 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-31T16:34:57,785 If you don't want 'vermouth.data.force_fields.martini3001' to be distributed and are 2024-01-31T16:34:57,785 already explicitly excluding 'vermouth.data.force_fields.martini3001' via 2024-01-31T16:34:57,786 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-31T16:34:57,786 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-31T16:34:57,787 combination with a more fine grained `package-data` configuration. 2024-01-31T16:34:57,787 You can read more about "package data files" on setuptools documentation page: 2024-01-31T16:34:57,788 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-31T16:34:57,789 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-31T16:34:57,790 even if it does not contain any `.py` files. 2024-01-31T16:34:57,790 On the other hand, currently there is no concept of package data 2024-01-31T16:34:57,790 directory, all directories are treated like packages. 2024-01-31T16:34:57,791 ******************************************************************************** 2024-01-31T16:34:57,792 !! 2024-01-31T16:34:57,793 check.warn(importable) 2024-01-31T16:34:57,793 /tmp/pip-build-env-p8svhto4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'vermouth.data.force_fields.martini30b32' is absent from the `packages` configuration. 2024-01-31T16:34:57,794 !! 2024-01-31T16:34:57,795 ******************************************************************************** 2024-01-31T16:34:57,795 ############################ 2024-01-31T16:34:57,796 # Package would be ignored # 2024-01-31T16:34:57,797 ############################ 2024-01-31T16:34:57,797 Python recognizes 'vermouth.data.force_fields.martini30b32' as an importable package[^1], 2024-01-31T16:34:57,798 but it is absent from setuptools' `packages` configuration. 2024-01-31T16:34:57,799 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-31T16:34:57,800 package, please make sure that 'vermouth.data.force_fields.martini30b32' is explicitly added 2024-01-31T16:34:57,800 to the `packages` configuration field. 2024-01-31T16:34:57,801 Alternatively, you can also rely on setuptools' discovery methods 2024-01-31T16:34:57,802 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-31T16:34:57,802 instead of `find_packages(...)`/`find:`). 2024-01-31T16:34:57,803 You can read more about "package discovery" on setuptools documentation page: 2024-01-31T16:34:57,804 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-31T16:34:57,805 If you don't want 'vermouth.data.force_fields.martini30b32' to be distributed and are 2024-01-31T16:34:57,806 already explicitly excluding 'vermouth.data.force_fields.martini30b32' via 2024-01-31T16:34:57,806 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-31T16:34:57,807 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-31T16:34:57,807 combination with a more fine grained `package-data` configuration. 2024-01-31T16:34:57,809 You can read more about "package data files" on setuptools documentation page: 2024-01-31T16:34:57,810 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-31T16:34:57,811 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-31T16:34:57,811 even if it does not contain any `.py` files. 2024-01-31T16:34:57,811 On the other hand, currently there is no concept of package data 2024-01-31T16:34:57,812 directory, all directories are treated like packages. 2024-01-31T16:34:57,812 ******************************************************************************** 2024-01-31T16:34:57,813 !! 2024-01-31T16:34:57,813 check.warn(importable) 2024-01-31T16:34:57,814 /tmp/pip-build-env-p8svhto4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'vermouth.data.force_fields.martini30dev' is absent from the `packages` configuration. 2024-01-31T16:34:57,814 !! 2024-01-31T16:34:57,815 ******************************************************************************** 2024-01-31T16:34:57,815 ############################ 2024-01-31T16:34:57,816 # Package would be ignored # 2024-01-31T16:34:57,816 ############################ 2024-01-31T16:34:57,816 Python recognizes 'vermouth.data.force_fields.martini30dev' as an importable package[^1], 2024-01-31T16:34:57,817 but it is absent from setuptools' `packages` configuration. 2024-01-31T16:34:57,818 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-31T16:34:57,818 package, please make sure that 'vermouth.data.force_fields.martini30dev' is explicitly added 2024-01-31T16:34:57,819 to the `packages` configuration field. 2024-01-31T16:34:57,820 Alternatively, you can also rely on setuptools' discovery methods 2024-01-31T16:34:57,821 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-31T16:34:57,821 instead of `find_packages(...)`/`find:`). 2024-01-31T16:34:57,822 You can read more about "package discovery" on setuptools documentation page: 2024-01-31T16:34:57,824 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-31T16:34:57,825 If you don't want 'vermouth.data.force_fields.martini30dev' to be distributed and are 2024-01-31T16:34:57,825 already explicitly excluding 'vermouth.data.force_fields.martini30dev' via 2024-01-31T16:34:57,826 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-31T16:34:57,827 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-31T16:34:57,827 combination with a more fine grained `package-data` configuration. 2024-01-31T16:34:57,828 You can read more about "package data files" on setuptools documentation page: 2024-01-31T16:34:57,829 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-31T16:34:57,830 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-31T16:34:57,831 even if it does not contain any `.py` files. 2024-01-31T16:34:57,831 On the other hand, currently there is no concept of package data 2024-01-31T16:34:57,832 directory, all directories are treated like packages. 2024-01-31T16:34:57,833 ******************************************************************************** 2024-01-31T16:34:57,834 !! 2024-01-31T16:34:57,834 check.warn(importable) 2024-01-31T16:34:57,835 /tmp/pip-build-env-p8svhto4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'vermouth.data.mappings' is absent from the `packages` configuration. 2024-01-31T16:34:57,835 !! 2024-01-31T16:34:57,837 ******************************************************************************** 2024-01-31T16:34:57,837 ############################ 2024-01-31T16:34:57,838 # Package would be ignored # 2024-01-31T16:34:57,838 ############################ 2024-01-31T16:34:57,838 Python recognizes 'vermouth.data.mappings' as an importable package[^1], 2024-01-31T16:34:57,839 but it is absent from setuptools' `packages` configuration. 2024-01-31T16:34:57,839 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-31T16:34:57,840 package, please make sure that 'vermouth.data.mappings' is explicitly added 2024-01-31T16:34:57,840 to the `packages` configuration field. 2024-01-31T16:34:57,841 Alternatively, you can also rely on setuptools' discovery methods 2024-01-31T16:34:57,841 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-31T16:34:57,842 instead of `find_packages(...)`/`find:`). 2024-01-31T16:34:57,843 You can read more about "package discovery" on setuptools documentation page: 2024-01-31T16:34:57,843 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-31T16:34:57,844 If you don't want 'vermouth.data.mappings' to be distributed and are 2024-01-31T16:34:57,845 already explicitly excluding 'vermouth.data.mappings' via 2024-01-31T16:34:57,845 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-31T16:34:57,845 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-31T16:34:57,846 combination with a more fine grained `package-data` configuration. 2024-01-31T16:34:57,847 You can read more about "package data files" on setuptools documentation page: 2024-01-31T16:34:57,848 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-31T16:34:57,850 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-31T16:34:57,850 even if it does not contain any `.py` files. 2024-01-31T16:34:57,851 On the other hand, currently there is no concept of package data 2024-01-31T16:34:57,852 directory, all directories are treated like packages. 2024-01-31T16:34:57,852 ******************************************************************************** 2024-01-31T16:34:57,853 !! 2024-01-31T16:34:57,854 check.warn(importable) 2024-01-31T16:34:57,855 /tmp/pip-build-env-p8svhto4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'vermouth.data.mappings.elnedyn' is absent from the `packages` configuration. 2024-01-31T16:34:57,855 !! 2024-01-31T16:34:57,856 ******************************************************************************** 2024-01-31T16:34:57,857 ############################ 2024-01-31T16:34:57,857 # Package would be ignored # 2024-01-31T16:34:57,858 ############################ 2024-01-31T16:34:57,858 Python recognizes 'vermouth.data.mappings.elnedyn' as an importable package[^1], 2024-01-31T16:34:57,859 but it is absent from setuptools' `packages` configuration. 2024-01-31T16:34:57,859 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-31T16:34:57,860 package, please make sure that 'vermouth.data.mappings.elnedyn' is explicitly added 2024-01-31T16:34:57,861 to the `packages` configuration field. 2024-01-31T16:34:57,862 Alternatively, you can also rely on setuptools' discovery methods 2024-01-31T16:34:57,862 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-31T16:34:57,863 instead of `find_packages(...)`/`find:`). 2024-01-31T16:34:57,864 You can read more about "package discovery" on setuptools documentation page: 2024-01-31T16:34:57,865 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-31T16:34:57,866 If you don't want 'vermouth.data.mappings.elnedyn' to be distributed and are 2024-01-31T16:34:57,866 already explicitly excluding 'vermouth.data.mappings.elnedyn' via 2024-01-31T16:34:57,867 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-31T16:34:57,867 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-31T16:34:57,867 combination with a more fine grained `package-data` configuration. 2024-01-31T16:34:57,868 You can read more about "package data files" on setuptools documentation page: 2024-01-31T16:34:57,869 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-31T16:34:57,870 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-31T16:34:57,870 even if it does not contain any `.py` files. 2024-01-31T16:34:57,871 On the other hand, currently there is no concept of package data 2024-01-31T16:34:57,871 directory, all directories are treated like packages. 2024-01-31T16:34:57,871 ******************************************************************************** 2024-01-31T16:34:57,872 !! 2024-01-31T16:34:57,873 check.warn(importable) 2024-01-31T16:34:57,873 /tmp/pip-build-env-p8svhto4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'vermouth.data.mappings.elnedyn.elnedyn22p' is absent from the `packages` configuration. 2024-01-31T16:34:57,873 !! 2024-01-31T16:34:57,874 ******************************************************************************** 2024-01-31T16:34:57,875 ############################ 2024-01-31T16:34:57,876 # Package would be ignored # 2024-01-31T16:34:57,876 ############################ 2024-01-31T16:34:57,877 Python recognizes 'vermouth.data.mappings.elnedyn.elnedyn22p' as an importable package[^1], 2024-01-31T16:34:57,877 but it is absent from setuptools' `packages` configuration. 2024-01-31T16:34:57,879 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-31T16:34:57,879 package, please make sure that 'vermouth.data.mappings.elnedyn.elnedyn22p' is explicitly added 2024-01-31T16:34:57,880 to the `packages` configuration field. 2024-01-31T16:34:57,881 Alternatively, you can also rely on setuptools' discovery methods 2024-01-31T16:34:57,881 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-31T16:34:57,882 instead of `find_packages(...)`/`find:`). 2024-01-31T16:34:57,883 You can read more about "package discovery" on setuptools documentation page: 2024-01-31T16:34:57,884 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-31T16:34:57,885 If you don't want 'vermouth.data.mappings.elnedyn.elnedyn22p' to be distributed and are 2024-01-31T16:34:57,886 already explicitly excluding 'vermouth.data.mappings.elnedyn.elnedyn22p' via 2024-01-31T16:34:57,886 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-31T16:34:57,887 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-31T16:34:57,887 combination with a more fine grained `package-data` configuration. 2024-01-31T16:34:57,888 You can read more about "package data files" on setuptools documentation page: 2024-01-31T16:34:57,889 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-31T16:34:57,891 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-31T16:34:57,892 even if it does not contain any `.py` files. 2024-01-31T16:34:57,892 On the other hand, currently there is no concept of package data 2024-01-31T16:34:57,893 directory, all directories are treated like packages. 2024-01-31T16:34:57,894 ******************************************************************************** 2024-01-31T16:34:57,894 !! 2024-01-31T16:34:57,895 check.warn(importable) 2024-01-31T16:34:57,895 /tmp/pip-build-env-p8svhto4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'vermouth.data.mappings.elnedyn21' is absent from the `packages` configuration. 2024-01-31T16:34:57,895 !! 2024-01-31T16:34:57,896 ******************************************************************************** 2024-01-31T16:34:57,897 ############################ 2024-01-31T16:34:57,897 # Package would be ignored # 2024-01-31T16:34:57,897 ############################ 2024-01-31T16:34:57,898 Python recognizes 'vermouth.data.mappings.elnedyn21' as an importable package[^1], 2024-01-31T16:34:57,898 but it is absent from setuptools' `packages` configuration. 2024-01-31T16:34:57,899 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-31T16:34:57,899 package, please make sure that 'vermouth.data.mappings.elnedyn21' is explicitly added 2024-01-31T16:34:57,900 to the `packages` configuration field. 2024-01-31T16:34:57,901 Alternatively, you can also rely on setuptools' discovery methods 2024-01-31T16:34:57,901 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-31T16:34:57,901 instead of `find_packages(...)`/`find:`). 2024-01-31T16:34:57,903 You can read more about "package discovery" on setuptools documentation page: 2024-01-31T16:34:57,904 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-31T16:34:57,904 If you don't want 'vermouth.data.mappings.elnedyn21' to be distributed and are 2024-01-31T16:34:57,905 already explicitly excluding 'vermouth.data.mappings.elnedyn21' via 2024-01-31T16:34:57,905 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-31T16:34:57,906 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-31T16:34:57,907 combination with a more fine grained `package-data` configuration. 2024-01-31T16:34:57,908 You can read more about "package data files" on setuptools documentation page: 2024-01-31T16:34:57,909 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-31T16:34:57,911 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-31T16:34:57,911 even if it does not contain any `.py` files. 2024-01-31T16:34:57,912 On the other hand, currently there is no concept of package data 2024-01-31T16:34:57,912 directory, all directories are treated like packages. 2024-01-31T16:34:57,913 ******************************************************************************** 2024-01-31T16:34:57,914 !! 2024-01-31T16:34:57,914 check.warn(importable) 2024-01-31T16:34:57,915 /tmp/pip-build-env-p8svhto4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'vermouth.data.mappings.martini3001' is absent from the `packages` configuration. 2024-01-31T16:34:57,915 !! 2024-01-31T16:34:57,916 ******************************************************************************** 2024-01-31T16:34:57,917 ############################ 2024-01-31T16:34:57,917 # Package would be ignored # 2024-01-31T16:34:57,918 ############################ 2024-01-31T16:34:57,918 Python recognizes 'vermouth.data.mappings.martini3001' as an importable package[^1], 2024-01-31T16:34:57,919 but it is absent from setuptools' `packages` configuration. 2024-01-31T16:34:57,920 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-31T16:34:57,921 package, please make sure that 'vermouth.data.mappings.martini3001' is explicitly added 2024-01-31T16:34:57,922 to the `packages` configuration field. 2024-01-31T16:34:57,922 Alternatively, you can also rely on setuptools' discovery methods 2024-01-31T16:34:57,923 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-31T16:34:57,923 instead of `find_packages(...)`/`find:`). 2024-01-31T16:34:57,924 You can read more about "package discovery" on setuptools documentation page: 2024-01-31T16:34:57,925 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-31T16:34:57,925 If you don't want 'vermouth.data.mappings.martini3001' to be distributed and are 2024-01-31T16:34:57,926 already explicitly excluding 'vermouth.data.mappings.martini3001' via 2024-01-31T16:34:57,926 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-31T16:34:57,927 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-31T16:34:57,927 combination with a more fine grained `package-data` configuration. 2024-01-31T16:34:57,928 You can read more about "package data files" on setuptools documentation page: 2024-01-31T16:34:57,929 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-31T16:34:57,930 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-31T16:34:57,930 even if it does not contain any `.py` files. 2024-01-31T16:34:57,931 On the other hand, currently there is no concept of package data 2024-01-31T16:34:57,931 directory, all directories are treated like packages. 2024-01-31T16:34:57,932 ******************************************************************************** 2024-01-31T16:34:57,933 !! 2024-01-31T16:34:57,933 check.warn(importable) 2024-01-31T16:34:57,934 /tmp/pip-build-env-p8svhto4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'vermouth.data.mappings.martini30b32' is absent from the `packages` configuration. 2024-01-31T16:34:57,934 !! 2024-01-31T16:34:57,936 ******************************************************************************** 2024-01-31T16:34:57,936 ############################ 2024-01-31T16:34:57,937 # Package would be ignored # 2024-01-31T16:34:57,937 ############################ 2024-01-31T16:34:57,938 Python recognizes 'vermouth.data.mappings.martini30b32' as an importable package[^1], 2024-01-31T16:34:57,939 but it is absent from setuptools' `packages` configuration. 2024-01-31T16:34:57,940 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-31T16:34:57,940 package, please make sure that 'vermouth.data.mappings.martini30b32' is explicitly added 2024-01-31T16:34:57,941 to the `packages` configuration field. 2024-01-31T16:34:57,942 Alternatively, you can also rely on setuptools' discovery methods 2024-01-31T16:34:57,942 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-31T16:34:57,943 instead of `find_packages(...)`/`find:`). 2024-01-31T16:34:57,943 You can read more about "package discovery" on setuptools documentation page: 2024-01-31T16:34:57,945 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-31T16:34:57,946 If you don't want 'vermouth.data.mappings.martini30b32' to be distributed and are 2024-01-31T16:34:57,946 already explicitly excluding 'vermouth.data.mappings.martini30b32' via 2024-01-31T16:34:57,947 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-31T16:34:57,947 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-31T16:34:57,948 combination with a more fine grained `package-data` configuration. 2024-01-31T16:34:57,949 You can read more about "package data files" on setuptools documentation page: 2024-01-31T16:34:57,950 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-31T16:34:57,951 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-31T16:34:57,952 even if it does not contain any `.py` files. 2024-01-31T16:34:57,952 On the other hand, currently there is no concept of package data 2024-01-31T16:34:57,952 directory, all directories are treated like packages. 2024-01-31T16:34:57,953 ******************************************************************************** 2024-01-31T16:34:57,954 !! 2024-01-31T16:34:57,954 check.warn(importable) 2024-01-31T16:34:57,954 /tmp/pip-build-env-p8svhto4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'vermouth.graphing' is absent from the `packages` configuration. 2024-01-31T16:34:57,955 !! 2024-01-31T16:34:57,955 ******************************************************************************** 2024-01-31T16:34:57,956 ############################ 2024-01-31T16:34:57,956 # Package would be ignored # 2024-01-31T16:34:57,957 ############################ 2024-01-31T16:34:57,957 Python recognizes 'vermouth.graphing' as an importable package[^1], 2024-01-31T16:34:57,958 but it is absent from setuptools' `packages` configuration. 2024-01-31T16:34:57,958 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-31T16:34:57,959 package, please make sure that 'vermouth.graphing' is explicitly added 2024-01-31T16:34:57,960 to the `packages` configuration field. 2024-01-31T16:34:57,961 Alternatively, you can also rely on setuptools' discovery methods 2024-01-31T16:34:57,961 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-31T16:34:57,962 instead of `find_packages(...)`/`find:`). 2024-01-31T16:34:57,963 You can read more about "package discovery" on setuptools documentation page: 2024-01-31T16:34:57,964 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-31T16:34:57,965 If you don't want 'vermouth.graphing' to be distributed and are 2024-01-31T16:34:57,966 already explicitly excluding 'vermouth.graphing' via 2024-01-31T16:34:57,966 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-31T16:34:57,967 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-31T16:34:57,969 combination with a more fine grained `package-data` configuration. 2024-01-31T16:34:57,970 You can read more about "package data files" on setuptools documentation page: 2024-01-31T16:34:57,971 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-31T16:34:57,975 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-31T16:34:57,976 even if it does not contain any `.py` files. 2024-01-31T16:34:57,976 On the other hand, currently there is no concept of package data 2024-01-31T16:34:57,977 directory, all directories are treated like packages. 2024-01-31T16:34:57,977 ******************************************************************************** 2024-01-31T16:34:57,978 !! 2024-01-31T16:34:57,979 check.warn(importable) 2024-01-31T16:34:57,980 /tmp/pip-build-env-p8svhto4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'vermouth.tests.data' is absent from the `packages` configuration. 2024-01-31T16:34:57,980 !! 2024-01-31T16:34:57,982 ******************************************************************************** 2024-01-31T16:34:57,983 ############################ 2024-01-31T16:34:57,984 # Package would be ignored # 2024-01-31T16:34:57,985 ############################ 2024-01-31T16:34:57,986 Python recognizes 'vermouth.tests.data' as an importable package[^1], 2024-01-31T16:34:57,986 but it is absent from setuptools' `packages` configuration. 2024-01-31T16:34:57,988 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-31T16:34:57,988 package, please make sure that 'vermouth.tests.data' is explicitly added 2024-01-31T16:34:57,989 to the `packages` configuration field. 2024-01-31T16:34:57,990 Alternatively, you can also rely on setuptools' discovery methods 2024-01-31T16:34:57,990 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-31T16:34:57,991 instead of `find_packages(...)`/`find:`). 2024-01-31T16:34:57,992 You can read more about "package discovery" on setuptools documentation page: 2024-01-31T16:34:57,993 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-31T16:34:57,993 If you don't want 'vermouth.tests.data' to be distributed and are 2024-01-31T16:34:57,994 already explicitly excluding 'vermouth.tests.data' via 2024-01-31T16:34:57,994 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-31T16:34:57,995 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-31T16:34:57,995 combination with a more fine grained `package-data` configuration. 2024-01-31T16:34:57,996 You can read more about "package data files" on setuptools documentation page: 2024-01-31T16:34:57,998 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-31T16:34:58,000 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-31T16:34:58,001 even if it does not contain any `.py` files. 2024-01-31T16:34:58,002 On the other hand, currently there is no concept of package data 2024-01-31T16:34:58,002 directory, all directories are treated like packages. 2024-01-31T16:34:58,003 ******************************************************************************** 2024-01-31T16:34:58,004 !! 2024-01-31T16:34:58,005 check.warn(importable) 2024-01-31T16:34:58,006 /tmp/pip-build-env-p8svhto4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'vermouth.tests.data.dssp_tests' is absent from the `packages` configuration. 2024-01-31T16:34:58,007 !! 2024-01-31T16:34:58,008 ******************************************************************************** 2024-01-31T16:34:58,009 ############################ 2024-01-31T16:34:58,010 # Package would be ignored # 2024-01-31T16:34:58,011 ############################ 2024-01-31T16:34:58,012 Python recognizes 'vermouth.tests.data.dssp_tests' as an importable package[^1], 2024-01-31T16:34:58,013 but it is absent from setuptools' `packages` configuration. 2024-01-31T16:34:58,014 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-31T16:34:58,014 package, please make sure that 'vermouth.tests.data.dssp_tests' is explicitly added 2024-01-31T16:34:58,015 to the `packages` configuration field. 2024-01-31T16:34:58,016 Alternatively, you can also rely on setuptools' discovery methods 2024-01-31T16:34:58,017 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-31T16:34:58,017 instead of `find_packages(...)`/`find:`). 2024-01-31T16:34:58,019 You can read more about "package discovery" on setuptools documentation page: 2024-01-31T16:34:58,020 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-31T16:34:58,022 If you don't want 'vermouth.tests.data.dssp_tests' to be distributed and are 2024-01-31T16:34:58,022 already explicitly excluding 'vermouth.tests.data.dssp_tests' via 2024-01-31T16:34:58,022 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-31T16:34:58,023 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-31T16:34:58,023 combination with a more fine grained `package-data` configuration. 2024-01-31T16:34:58,024 You can read more about "package data files" on setuptools documentation page: 2024-01-31T16:34:58,025 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-31T16:34:58,026 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-31T16:34:58,027 even if it does not contain any `.py` files. 2024-01-31T16:34:58,027 On the other hand, currently there is no concept of package data 2024-01-31T16:34:58,028 directory, all directories are treated like packages. 2024-01-31T16:34:58,028 ******************************************************************************** 2024-01-31T16:34:58,047 !! 2024-01-31T16:34:58,065 check.warn(importable) 2024-01-31T16:34:58,065 /tmp/pip-build-env-p8svhto4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'vermouth.tests.data.force_fields' is absent from the `packages` configuration. 2024-01-31T16:34:58,066 !! 2024-01-31T16:34:58,067 ******************************************************************************** 2024-01-31T16:34:58,067 ############################ 2024-01-31T16:34:58,068 # Package would be ignored # 2024-01-31T16:34:58,068 ############################ 2024-01-31T16:34:58,069 Python recognizes 'vermouth.tests.data.force_fields' as an importable package[^1], 2024-01-31T16:34:58,069 but it is absent from setuptools' `packages` configuration. 2024-01-31T16:34:58,070 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-31T16:34:58,071 package, please make sure that 'vermouth.tests.data.force_fields' is explicitly added 2024-01-31T16:34:58,071 to the `packages` configuration field. 2024-01-31T16:34:58,072 Alternatively, you can also rely on setuptools' discovery methods 2024-01-31T16:34:58,072 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-31T16:34:58,073 instead of `find_packages(...)`/`find:`). 2024-01-31T16:34:58,074 You can read more about "package discovery" on setuptools documentation page: 2024-01-31T16:34:58,075 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-31T16:34:58,076 If you don't want 'vermouth.tests.data.force_fields' to be distributed and are 2024-01-31T16:34:58,076 already explicitly excluding 'vermouth.tests.data.force_fields' via 2024-01-31T16:34:58,077 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-31T16:34:58,077 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-31T16:34:58,078 combination with a more fine grained `package-data` configuration. 2024-01-31T16:34:58,079 You can read more about "package data files" on setuptools documentation page: 2024-01-31T16:34:58,080 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-31T16:34:58,081 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-31T16:34:58,082 even if it does not contain any `.py` files. 2024-01-31T16:34:58,082 On the other hand, currently there is no concept of package data 2024-01-31T16:34:58,083 directory, all directories are treated like packages. 2024-01-31T16:34:58,083 ******************************************************************************** 2024-01-31T16:34:58,085 !! 2024-01-31T16:34:58,085 check.warn(importable) 2024-01-31T16:34:58,085 /tmp/pip-build-env-p8svhto4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'vermouth.tests.data.force_fields.pepplane' is absent from the `packages` configuration. 2024-01-31T16:34:58,086 !! 2024-01-31T16:34:58,087 ******************************************************************************** 2024-01-31T16:34:58,087 ############################ 2024-01-31T16:34:58,087 # Package would be ignored # 2024-01-31T16:34:58,088 ############################ 2024-01-31T16:34:58,088 Python recognizes 'vermouth.tests.data.force_fields.pepplane' as an importable package[^1], 2024-01-31T16:34:58,089 but it is absent from setuptools' `packages` configuration. 2024-01-31T16:34:58,090 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-31T16:34:58,090 package, please make sure that 'vermouth.tests.data.force_fields.pepplane' is explicitly added 2024-01-31T16:34:58,090 to the `packages` configuration field. 2024-01-31T16:34:58,091 Alternatively, you can also rely on setuptools' discovery methods 2024-01-31T16:34:58,092 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-31T16:34:58,092 instead of `find_packages(...)`/`find:`). 2024-01-31T16:34:58,093 You can read more about "package discovery" on setuptools documentation page: 2024-01-31T16:34:58,094 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-31T16:34:58,095 If you don't want 'vermouth.tests.data.force_fields.pepplane' to be distributed and are 2024-01-31T16:34:58,096 already explicitly excluding 'vermouth.tests.data.force_fields.pepplane' via 2024-01-31T16:34:58,096 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-31T16:34:58,097 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-31T16:34:58,097 combination with a more fine grained `package-data` configuration. 2024-01-31T16:34:58,098 You can read more about "package data files" on setuptools documentation page: 2024-01-31T16:34:58,099 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-31T16:34:58,101 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-31T16:34:58,101 even if it does not contain any `.py` files. 2024-01-31T16:34:58,101 On the other hand, currently there is no concept of package data 2024-01-31T16:34:58,102 directory, all directories are treated like packages. 2024-01-31T16:34:58,102 ******************************************************************************** 2024-01-31T16:34:58,103 !! 2024-01-31T16:34:58,104 check.warn(importable) 2024-01-31T16:34:58,105 /tmp/pip-build-env-p8svhto4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'vermouth.tests.data.integration_tests' is absent from the `packages` configuration. 2024-01-31T16:34:58,105 !! 2024-01-31T16:34:58,106 ******************************************************************************** 2024-01-31T16:34:58,107 ############################ 2024-01-31T16:34:58,107 # Package would be ignored # 2024-01-31T16:34:58,108 ############################ 2024-01-31T16:34:58,108 Python recognizes 'vermouth.tests.data.integration_tests' as an importable package[^1], 2024-01-31T16:34:58,109 but it is absent from setuptools' `packages` configuration. 2024-01-31T16:34:58,110 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-31T16:34:58,110 package, please make sure that 'vermouth.tests.data.integration_tests' is explicitly added 2024-01-31T16:34:58,111 to the `packages` configuration field. 2024-01-31T16:34:58,112 Alternatively, you can also rely on setuptools' discovery methods 2024-01-31T16:34:58,112 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-31T16:34:58,113 instead of `find_packages(...)`/`find:`). 2024-01-31T16:34:58,114 You can read more about "package discovery" on setuptools documentation page: 2024-01-31T16:34:58,114 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-31T16:34:58,115 If you don't want 'vermouth.tests.data.integration_tests' to be distributed and are 2024-01-31T16:34:58,115 already explicitly excluding 'vermouth.tests.data.integration_tests' via 2024-01-31T16:34:58,116 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-31T16:34:58,116 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-31T16:34:58,117 combination with a more fine grained `package-data` configuration. 2024-01-31T16:34:58,118 You can read more about "package data files" on setuptools documentation page: 2024-01-31T16:34:58,119 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-31T16:34:58,120 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-31T16:34:58,121 even if it does not contain any `.py` files. 2024-01-31T16:34:58,121 On the other hand, currently there is no concept of package data 2024-01-31T16:34:58,121 directory, all directories are treated like packages. 2024-01-31T16:34:58,122 ******************************************************************************** 2024-01-31T16:34:58,123 !! 2024-01-31T16:34:58,123 check.warn(importable) 2024-01-31T16:34:58,124 /tmp/pip-build-env-p8svhto4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'vermouth.tests.data.mappings' is absent from the `packages` configuration. 2024-01-31T16:34:58,124 !! 2024-01-31T16:34:58,125 ******************************************************************************** 2024-01-31T16:34:58,125 ############################ 2024-01-31T16:34:58,126 # Package would be ignored # 2024-01-31T16:34:58,126 ############################ 2024-01-31T16:34:58,127 Python recognizes 'vermouth.tests.data.mappings' as an importable package[^1], 2024-01-31T16:34:58,127 but it is absent from setuptools' `packages` configuration. 2024-01-31T16:34:58,128 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-31T16:34:58,129 package, please make sure that 'vermouth.tests.data.mappings' is explicitly added 2024-01-31T16:34:58,129 to the `packages` configuration field. 2024-01-31T16:34:58,130 Alternatively, you can also rely on setuptools' discovery methods 2024-01-31T16:34:58,131 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-31T16:34:58,131 instead of `find_packages(...)`/`find:`). 2024-01-31T16:34:58,132 You can read more about "package discovery" on setuptools documentation page: 2024-01-31T16:34:58,133 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-31T16:34:58,134 If you don't want 'vermouth.tests.data.mappings' to be distributed and are 2024-01-31T16:34:58,135 already explicitly excluding 'vermouth.tests.data.mappings' via 2024-01-31T16:34:58,135 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-31T16:34:58,136 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-31T16:34:58,136 combination with a more fine grained `package-data` configuration. 2024-01-31T16:34:58,137 You can read more about "package data files" on setuptools documentation page: 2024-01-31T16:34:58,138 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-31T16:34:58,139 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-31T16:34:58,139 even if it does not contain any `.py` files. 2024-01-31T16:34:58,140 On the other hand, currently there is no concept of package data 2024-01-31T16:34:58,140 directory, all directories are treated like packages. 2024-01-31T16:34:58,141 ******************************************************************************** 2024-01-31T16:34:58,141 !! 2024-01-31T16:34:58,142 check.warn(importable) 2024-01-31T16:34:58,142 /tmp/pip-build-env-p8svhto4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'vermouth.tests.gmx' is absent from the `packages` configuration. 2024-01-31T16:34:58,143 !! 2024-01-31T16:34:58,143 ******************************************************************************** 2024-01-31T16:34:58,144 ############################ 2024-01-31T16:34:58,144 # Package would be ignored # 2024-01-31T16:34:58,145 ############################ 2024-01-31T16:34:58,145 Python recognizes 'vermouth.tests.gmx' as an importable package[^1], 2024-01-31T16:34:58,146 but it is absent from setuptools' `packages` configuration. 2024-01-31T16:34:58,146 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-31T16:34:58,147 package, please make sure that 'vermouth.tests.gmx' is explicitly added 2024-01-31T16:34:58,148 to the `packages` configuration field. 2024-01-31T16:34:58,149 Alternatively, you can also rely on setuptools' discovery methods 2024-01-31T16:34:58,149 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-31T16:34:58,150 instead of `find_packages(...)`/`find:`). 2024-01-31T16:34:58,151 You can read more about "package discovery" on setuptools documentation page: 2024-01-31T16:34:58,152 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-31T16:34:58,153 If you don't want 'vermouth.tests.gmx' to be distributed and are 2024-01-31T16:34:58,154 already explicitly excluding 'vermouth.tests.gmx' via 2024-01-31T16:34:58,154 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-31T16:34:58,155 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-31T16:34:58,155 combination with a more fine grained `package-data` configuration. 2024-01-31T16:34:58,156 You can read more about "package data files" on setuptools documentation page: 2024-01-31T16:34:58,157 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-31T16:34:58,158 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-31T16:34:58,159 even if it does not contain any `.py` files. 2024-01-31T16:34:58,159 On the other hand, currently there is no concept of package data 2024-01-31T16:34:58,160 directory, all directories are treated like packages. 2024-01-31T16:34:58,160 ******************************************************************************** 2024-01-31T16:34:58,161 !! 2024-01-31T16:34:58,162 check.warn(importable) 2024-01-31T16:34:58,162 /tmp/pip-build-env-p8svhto4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'vermouth.tests.pdb' is absent from the `packages` configuration. 2024-01-31T16:34:58,163 !! 2024-01-31T16:34:58,164 ******************************************************************************** 2024-01-31T16:34:58,165 ############################ 2024-01-31T16:34:58,165 # Package would be ignored # 2024-01-31T16:34:58,166 ############################ 2024-01-31T16:34:58,166 Python recognizes 'vermouth.tests.pdb' as an importable package[^1], 2024-01-31T16:34:58,167 but it is absent from setuptools' `packages` configuration. 2024-01-31T16:34:58,167 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-31T16:34:58,168 package, please make sure that 'vermouth.tests.pdb' is explicitly added 2024-01-31T16:34:58,168 to the `packages` configuration field. 2024-01-31T16:34:58,169 Alternatively, you can also rely on setuptools' discovery methods 2024-01-31T16:34:58,169 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-31T16:34:58,170 instead of `find_packages(...)`/`find:`). 2024-01-31T16:34:58,171 You can read more about "package discovery" on setuptools documentation page: 2024-01-31T16:34:58,171 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-31T16:34:58,172 If you don't want 'vermouth.tests.pdb' to be distributed and are 2024-01-31T16:34:58,173 already explicitly excluding 'vermouth.tests.pdb' via 2024-01-31T16:34:58,174 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-31T16:34:58,174 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-31T16:34:58,175 combination with a more fine grained `package-data` configuration. 2024-01-31T16:34:58,176 You can read more about "package data files" on setuptools documentation page: 2024-01-31T16:34:58,177 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-31T16:34:58,179 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-31T16:34:58,179 even if it does not contain any `.py` files. 2024-01-31T16:34:58,180 On the other hand, currently there is no concept of package data 2024-01-31T16:34:58,181 directory, all directories are treated like packages. 2024-01-31T16:34:58,181 ******************************************************************************** 2024-01-31T16:34:58,182 !! 2024-01-31T16:34:58,183 check.warn(importable) 2024-01-31T16:34:58,183 /tmp/pip-build-env-p8svhto4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'vermouth.tests.rcsu' is absent from the `packages` configuration. 2024-01-31T16:34:58,184 !! 2024-01-31T16:34:58,185 ******************************************************************************** 2024-01-31T16:34:58,185 ############################ 2024-01-31T16:34:58,186 # Package would be ignored # 2024-01-31T16:34:58,186 ############################ 2024-01-31T16:34:58,187 Python recognizes 'vermouth.tests.rcsu' as an importable package[^1], 2024-01-31T16:34:58,187 but it is absent from setuptools' `packages` configuration. 2024-01-31T16:34:58,188 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-31T16:34:58,188 package, please make sure that 'vermouth.tests.rcsu' is explicitly added 2024-01-31T16:34:58,189 to the `packages` configuration field. 2024-01-31T16:34:58,190 Alternatively, you can also rely on setuptools' discovery methods 2024-01-31T16:34:58,191 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-31T16:34:58,191 instead of `find_packages(...)`/`find:`). 2024-01-31T16:34:58,192 You can read more about "package discovery" on setuptools documentation page: 2024-01-31T16:34:58,193 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-31T16:34:58,194 If you don't want 'vermouth.tests.rcsu' to be distributed and are 2024-01-31T16:34:58,195 already explicitly excluding 'vermouth.tests.rcsu' via 2024-01-31T16:34:58,196 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-31T16:34:58,196 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-31T16:34:58,197 combination with a more fine grained `package-data` configuration. 2024-01-31T16:34:58,197 You can read more about "package data files" on setuptools documentation page: 2024-01-31T16:34:58,198 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-31T16:34:58,199 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-31T16:34:58,200 even if it does not contain any `.py` files. 2024-01-31T16:34:58,200 On the other hand, currently there is no concept of package data 2024-01-31T16:34:58,201 directory, all directories are treated like packages. 2024-01-31T16:34:58,201 ******************************************************************************** 2024-01-31T16:34:58,202 !! 2024-01-31T16:34:58,202 check.warn(importable) 2024-01-31T16:34:58,203 creating build/lib/vermouth/tests/data 2024-01-31T16:34:58,203 copying vermouth/tests/data/1bta.pdb -> build/lib/vermouth/tests/data 2024-01-31T16:34:58,204 copying vermouth/tests/data/1bta_mutated.pdb -> build/lib/vermouth/tests/data 2024-01-31T16:34:58,204 copying vermouth/tests/data/2QWO.pdb -> build/lib/vermouth/tests/data 2024-01-31T16:34:58,205 copying vermouth/tests/data/2dn2.pdb -> build/lib/vermouth/tests/data 2024-01-31T16:34:58,205 copying vermouth/tests/data/6E8W.pdb -> build/lib/vermouth/tests/data 2024-01-31T16:34:58,206 copying vermouth/tests/data/ala5.pdb -> build/lib/vermouth/tests/data 2024-01-31T16:34:58,206 copying vermouth/tests/data/ala5_cg.pdb -> build/lib/vermouth/tests/data 2024-01-31T16:34:58,207 copying vermouth/tests/data/dna-short.pdb -> build/lib/vermouth/tests/data 2024-01-31T16:34:58,207 copying vermouth/tests/data/heme.pdb -> build/lib/vermouth/tests/data 2024-01-31T16:34:58,208 copying vermouth/tests/data/tri_alanine.pdb -> build/lib/vermouth/tests/data 2024-01-31T16:34:58,208 creating build/lib/vermouth/tests/data/dssp_tests 2024-01-31T16:34:58,209 copying vermouth/tests/data/dssp_tests/dssp_1bta.ssd -> build/lib/vermouth/tests/data/dssp_tests 2024-01-31T16:34:58,209 copying vermouth/tests/data/dssp_tests/mini-protein1_betasheet.pdb.v2.2.1-3b2-deb_cv1.ssd -> build/lib/vermouth/tests/data/dssp_tests 2024-01-31T16:34:58,209 copying vermouth/tests/data/dssp_tests/mini-protein1_betasheet.pdb.v3.0.0-3b1-deb_cv1.ssd -> build/lib/vermouth/tests/data/dssp_tests 2024-01-31T16:34:58,210 copying vermouth/tests/data/dssp_tests/mini-protein2_helix.pdb.v2.2.1-3b2-deb_cv1.ssd -> build/lib/vermouth/tests/data/dssp_tests 2024-01-31T16:34:58,210 copying vermouth/tests/data/dssp_tests/mini-protein2_helix.pdb.v3.0.0-3b1-deb_cv1.ssd -> build/lib/vermouth/tests/data/dssp_tests 2024-01-31T16:34:58,211 copying vermouth/tests/data/dssp_tests/mini-protein3_trp-cage.pdb.v2.2.1-3b2-deb_cv1.ssd -> build/lib/vermouth/tests/data/dssp_tests 2024-01-31T16:34:58,211 copying vermouth/tests/data/dssp_tests/mini-protein3_trp-cage.pdb.v3.0.0-3b1-deb_cv1.ssd -> build/lib/vermouth/tests/data/dssp_tests 2024-01-31T16:34:58,212 creating build/lib/vermouth/tests/data/force_fields 2024-01-31T16:34:58,213 creating build/lib/vermouth/tests/data/force_fields/martini-test 2024-01-31T16:34:58,213 copying vermouth/tests/data/force_fields/martini-test/aminoacids.ff -> build/lib/vermouth/tests/data/force_fields/martini-test 2024-01-31T16:34:58,213 creating build/lib/vermouth/tests/data/force_fields/pepplane 2024-01-31T16:34:58,214 copying vermouth/tests/data/force_fields/pepplane/ala.ff -> build/lib/vermouth/tests/data/force_fields/pepplane 2024-01-31T16:34:58,215 copying vermouth/tests/data/force_fields/pepplane/general.ff -> build/lib/vermouth/tests/data/force_fields/pepplane 2024-01-31T16:34:58,215 copying vermouth/tests/data/force_fields/pepplane/modifications.ff -> build/lib/vermouth/tests/data/force_fields/pepplane 2024-01-31T16:34:58,216 creating build/lib/vermouth/tests/data/force_fields/universal-test 2024-01-31T16:34:58,216 copying vermouth/tests/data/force_fields/universal-test/aminoacids.rtp -> build/lib/vermouth/tests/data/force_fields/universal-test 2024-01-31T16:34:58,217 copying vermouth/tests/data/force_fields/universal-test/modifications.ff -> build/lib/vermouth/tests/data/force_fields/universal-test 2024-01-31T16:34:58,217 creating build/lib/vermouth/tests/data/integration_tests 2024-01-31T16:34:58,217 creating build/lib/vermouth/tests/data/integration_tests/tier-0 2024-01-31T16:34:58,218 creating build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini 2024-01-31T16:34:58,218 copying vermouth/tests/data/integration_tests/tier-0/dipro-termini/README -> build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini 2024-01-31T16:34:58,219 copying vermouth/tests/data/integration_tests/tier-0/dipro-termini/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini 2024-01-31T16:34:58,219 creating build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2024-01-31T16:34:58,219 copying vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2024-01-31T16:34:58,220 copying vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2024-01-31T16:34:58,221 copying vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2024-01-31T16:34:58,221 copying vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2024-01-31T16:34:58,222 copying vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2024-01-31T16:34:58,222 creating build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet 2024-01-31T16:34:58,222 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/README -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet 2024-01-31T16:34:58,223 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet 2024-01-31T16:34:58,223 creating build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2024-01-31T16:34:58,224 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2024-01-31T16:34:58,224 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2024-01-31T16:34:58,225 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2024-01-31T16:34:58,225 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2024-01-31T16:34:58,226 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2024-01-31T16:34:58,226 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2024-01-31T16:34:58,227 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2024-01-31T16:34:58,227 creating build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix 2024-01-31T16:34:58,228 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/README -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix 2024-01-31T16:34:58,228 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix 2024-01-31T16:34:58,229 creating build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2024-01-31T16:34:58,229 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2024-01-31T16:34:58,229 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2024-01-31T16:34:58,230 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2024-01-31T16:34:58,230 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2024-01-31T16:34:58,231 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2024-01-31T16:34:58,231 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2024-01-31T16:34:58,232 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2024-01-31T16:34:58,232 creating build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage 2024-01-31T16:34:58,233 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/README -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage 2024-01-31T16:34:58,233 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage 2024-01-31T16:34:58,234 creating build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2024-01-31T16:34:58,234 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2024-01-31T16:34:58,235 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2024-01-31T16:34:58,235 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2024-01-31T16:34:58,236 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2024-01-31T16:34:58,237 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2024-01-31T16:34:58,237 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2024-01-31T16:34:58,238 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2024-01-31T16:34:58,238 creating build/lib/vermouth/tests/data/integration_tests/tier-1 2024-01-31T16:34:58,239 creating build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5 2024-01-31T16:34:58,239 copying vermouth/tests/data/integration_tests/tier-1/1mj5/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5 2024-01-31T16:34:58,240 copying vermouth/tests/data/integration_tests/tier-1/1mj5/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5 2024-01-31T16:34:58,248 creating build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm 2024-01-31T16:34:58,249 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm 2024-01-31T16:34:58,251 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm 2024-01-31T16:34:58,263 creating build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2024-01-31T16:34:58,264 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2024-01-31T16:34:58,268 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/cg.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2024-01-31T16:34:58,270 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/chain_.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2024-01-31T16:34:58,273 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2024-01-31T16:34:58,275 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2024-01-31T16:34:58,277 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2024-01-31T16:34:58,281 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2024-01-31T16:34:58,283 creating build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2024-01-31T16:34:58,284 copying vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2024-01-31T16:34:58,289 copying vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/cg.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2024-01-31T16:34:58,290 copying vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/chain_.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2024-01-31T16:34:58,294 copying vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2024-01-31T16:34:58,296 copying vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2024-01-31T16:34:58,297 copying vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2024-01-31T16:34:58,302 copying vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2024-01-31T16:34:58,304 creating build/lib/vermouth/tests/data/integration_tests/tier-1/3i40 2024-01-31T16:34:58,305 copying vermouth/tests/data/integration_tests/tier-1/3i40/3i40.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40 2024-01-31T16:34:58,308 copying vermouth/tests/data/integration_tests/tier-1/3i40/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40 2024-01-31T16:34:58,310 creating build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2024-01-31T16:34:58,311 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2024-01-31T16:34:58,313 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/cg.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2024-01-31T16:34:58,315 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2024-01-31T16:34:58,317 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/chain_C.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2024-01-31T16:34:58,320 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2024-01-31T16:34:58,322 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2024-01-31T16:34:58,324 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/insulin_dimer.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2024-01-31T16:34:58,327 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2024-01-31T16:34:58,329 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2024-01-31T16:34:58,331 creating build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap 2024-01-31T16:34:58,332 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/6LFO_gap.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap 2024-01-31T16:34:58,338 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap 2024-01-31T16:34:58,339 creating build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2024-01-31T16:34:58,341 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2024-01-31T16:34:58,344 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/cg.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2024-01-31T16:34:58,346 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/chain_R.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2024-01-31T16:34:58,349 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2024-01-31T16:34:58,351 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2024-01-31T16:34:58,353 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2024-01-31T16:34:58,357 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2024-01-31T16:34:58,359 creating build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain 2024-01-31T16:34:58,360 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain 2024-01-31T16:34:58,362 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain 2024-01-31T16:34:58,365 creating build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2024-01-31T16:34:58,366 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2024-01-31T16:34:58,369 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/cg.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2024-01-31T16:34:58,371 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2024-01-31T16:34:58,373 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2024-01-31T16:34:58,375 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2024-01-31T16:34:58,377 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2024-01-31T16:34:58,380 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2024-01-31T16:34:58,382 creating build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region 2024-01-31T16:34:58,383 copying vermouth/tests/data/integration_tests/tier-1/EN_region/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region 2024-01-31T16:34:58,385 copying vermouth/tests/data/integration_tests/tier-1/EN_region/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region 2024-01-31T16:34:58,388 creating build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2024-01-31T16:34:58,389 copying vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2024-01-31T16:34:58,392 copying vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/cg.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2024-01-31T16:34:58,395 copying vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2024-01-31T16:34:58,398 copying vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2024-01-31T16:34:58,401 copying vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2024-01-31T16:34:58,403 copying vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2024-01-31T16:34:58,407 copying vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2024-01-31T16:34:58,410 creating build/lib/vermouth/tests/data/integration_tests/tier-1/bpti 2024-01-31T16:34:58,411 copying vermouth/tests/data/integration_tests/tier-1/bpti/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti 2024-01-31T16:34:58,413 copying vermouth/tests/data/integration_tests/tier-1/bpti/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti 2024-01-31T16:34:58,418 creating build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2024-01-31T16:34:58,419 copying vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2024-01-31T16:34:58,422 copying vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2024-01-31T16:34:58,425 copying vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2024-01-31T16:34:58,428 copying vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2024-01-31T16:34:58,430 copying vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2024-01-31T16:34:58,434 copying vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2024-01-31T16:34:58,437 copying vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2024-01-31T16:34:58,439 creating build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme 2024-01-31T16:34:58,441 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme 2024-01-31T16:34:58,443 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme 2024-01-31T16:34:58,450 creating build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2024-01-31T16:34:58,451 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2024-01-31T16:34:58,454 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2024-01-31T16:34:58,458 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2024-01-31T16:34:58,460 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2024-01-31T16:34:58,462 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2024-01-31T16:34:58,466 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2024-01-31T16:34:58,470 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/test.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2024-01-31T16:34:58,474 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2024-01-31T16:34:58,477 creating build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias 2024-01-31T16:34:58,478 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias 2024-01-31T16:34:58,480 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias 2024-01-31T16:34:58,486 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/map.map -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias 2024-01-31T16:34:58,491 creating build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/martinize2 2024-01-31T16:34:58,492 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/martinize2 2024-01-31T16:34:58,496 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/martinize2 2024-01-31T16:34:58,498 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/martinize2 2024-01-31T16:34:58,500 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/martinize2 2024-01-31T16:34:58,504 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/martinize2/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/martinize2 2024-01-31T16:34:58,506 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/martinize2/virtual_sites_atomtypes.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/martinize2 2024-01-31T16:34:58,508 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/martinize2/virtual_sites_nonbond_params.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/martinize2 2024-01-31T16:34:58,510 creating build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_GO 2024-01-31T16:34:58,511 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_GO 2024-01-31T16:34:58,513 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_GO 2024-01-31T16:34:58,519 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/map.map -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_GO 2024-01-31T16:34:58,524 creating build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/martinize2 2024-01-31T16:34:58,525 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/martinize2 2024-01-31T16:34:58,528 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/martinize2 2024-01-31T16:34:58,530 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/martinize2 2024-01-31T16:34:58,532 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/martinize2/go_atomtypes.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/martinize2 2024-01-31T16:34:58,534 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/martinize2/go_nbparams.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/martinize2 2024-01-31T16:34:58,537 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/martinize2 2024-01-31T16:34:58,540 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/martinize2/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/martinize2 2024-01-31T16:34:58,542 creating build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias 2024-01-31T16:34:58,543 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias 2024-01-31T16:34:58,545 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias 2024-01-31T16:34:58,551 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/map.map -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias 2024-01-31T16:34:58,557 creating build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/martinize2 2024-01-31T16:34:58,558 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/martinize2 2024-01-31T16:34:58,561 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/martinize2 2024-01-31T16:34:58,563 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/martinize2 2024-01-31T16:34:58,565 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/martinize2/go_atomtypes.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/martinize2 2024-01-31T16:34:58,567 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/martinize2/go_nbparams.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/martinize2 2024-01-31T16:34:58,570 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/martinize2 2024-01-31T16:34:58,573 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/martinize2/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/martinize2 2024-01-31T16:34:58,575 creating build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2024-01-31T16:34:58,576 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2024-01-31T16:34:58,578 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2024-01-31T16:34:58,582 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2024-01-31T16:34:58,585 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2024-01-31T16:34:58,588 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2024-01-31T16:34:58,591 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2024-01-31T16:34:58,593 creating build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2024-01-31T16:34:58,594 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2024-01-31T16:34:58,597 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2024-01-31T16:34:58,601 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2024-01-31T16:34:58,603 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2024-01-31T16:34:58,605 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2024-01-31T16:34:58,609 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2024-01-31T16:34:58,611 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/test.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2024-01-31T16:34:58,615 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2024-01-31T16:34:58,617 creating build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm 2024-01-31T16:34:58,618 copying vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm 2024-01-31T16:34:58,620 copying vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/input.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm 2024-01-31T16:34:58,625 creating build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2024-01-31T16:34:58,626 copying vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2024-01-31T16:34:58,629 copying vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/cg.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2024-01-31T16:34:58,631 copying vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/chain_.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2024-01-31T16:34:58,634 copying vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2024-01-31T16:34:58,636 copying vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2024-01-31T16:34:58,639 copying vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2024-01-31T16:34:58,642 copying vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2024-01-31T16:34:58,645 copying vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/sys.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2024-01-31T16:34:58,647 creating build/lib/vermouth/tests/data/integration_tests/tier-1/villin 2024-01-31T16:34:58,648 copying vermouth/tests/data/integration_tests/tier-1/villin/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/villin 2024-01-31T16:34:58,650 copying vermouth/tests/data/integration_tests/tier-1/villin/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/villin 2024-01-31T16:34:58,654 creating build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2024-01-31T16:34:58,655 copying vermouth/tests/data/integration_tests/tier-1/villin/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2024-01-31T16:34:58,658 copying vermouth/tests/data/integration_tests/tier-1/villin/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2024-01-31T16:34:58,661 copying vermouth/tests/data/integration_tests/tier-1/villin/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2024-01-31T16:34:58,663 copying vermouth/tests/data/integration_tests/tier-1/villin/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2024-01-31T16:34:58,666 copying vermouth/tests/data/integration_tests/tier-1/villin/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2024-01-31T16:34:58,668 copying vermouth/tests/data/integration_tests/tier-1/villin/martinize2/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2024-01-31T16:34:58,670 creating build/lib/vermouth/tests/data/mappings 2024-01-31T16:34:58,671 creating build/lib/vermouth/tests/data/mappings/universal-test 2024-01-31T16:34:58,672 creating build/lib/vermouth/tests/data/mappings/universal-test/martini-test 2024-01-31T16:34:58,673 copying vermouth/tests/data/mappings/universal-test/martini-test/ser.mapping -> build/lib/vermouth/tests/data/mappings/universal-test/martini-test 2024-01-31T16:34:58,676 creating build/lib/vermouth/tests/data/mappings/universal-test/pepplane 2024-01-31T16:34:58,677 copying vermouth/tests/data/mappings/universal-test/pepplane/ala.mapping -> build/lib/vermouth/tests/data/mappings/universal-test/pepplane 2024-01-31T16:34:58,679 copying vermouth/tests/data/mappings/universal-test/pepplane/modifications.mapping -> build/lib/vermouth/tests/data/mappings/universal-test/pepplane 2024-01-31T16:34:58,681 creating build/lib/vermouth/tests/gmx 2024-01-31T16:34:58,682 copying vermouth/tests/gmx/test_gro.py -> build/lib/vermouth/tests/gmx 2024-01-31T16:34:58,685 copying vermouth/tests/gmx/test_itp.py -> build/lib/vermouth/tests/gmx 2024-01-31T16:34:58,688 copying vermouth/tests/gmx/test_topology.py -> build/lib/vermouth/tests/gmx 2024-01-31T16:34:58,690 creating build/lib/vermouth/tests/pdb 2024-01-31T16:34:58,691 copying vermouth/tests/pdb/test_read_pdb.py -> build/lib/vermouth/tests/pdb 2024-01-31T16:34:58,694 copying vermouth/tests/pdb/test_write_pdb.py -> build/lib/vermouth/tests/pdb 2024-01-31T16:34:58,697 creating build/lib/vermouth/tests/rcsu 2024-01-31T16:34:58,698 copying vermouth/tests/rcsu/test_go_structure_bias.py -> build/lib/vermouth/tests/rcsu 2024-01-31T16:34:58,702 copying vermouth/tests/rcsu/test_go_utils.py -> build/lib/vermouth/tests/rcsu 2024-01-31T16:34:58,704 copying vermouth/tests/rcsu/test_read_go_map.py -> build/lib/vermouth/tests/rcsu 2024-01-31T16:34:58,707 creating build/lib/vermouth/data 2024-01-31T16:34:58,708 copying vermouth/data/quotes.txt -> build/lib/vermouth/data 2024-01-31T16:34:58,710 creating build/lib/vermouth/data/force_fields 2024-01-31T16:34:58,711 creating build/lib/vermouth/data/force_fields/amber 2024-01-31T16:34:58,712 copying vermouth/data/force_fields/amber/aminoacids.rtp -> build/lib/vermouth/data/force_fields/amber 2024-01-31T16:34:58,716 copying vermouth/data/force_fields/amber/modifications.ff -> build/lib/vermouth/data/force_fields/amber 2024-01-31T16:34:58,718 creating build/lib/vermouth/data/force_fields/charmm 2024-01-31T16:34:58,719 copying vermouth/data/force_fields/charmm/aminoacids.rtp -> build/lib/vermouth/data/force_fields/charmm 2024-01-31T16:34:58,722 copying vermouth/data/force_fields/charmm/modifications.ff -> build/lib/vermouth/data/force_fields/charmm 2024-01-31T16:34:58,725 copying vermouth/data/force_fields/charmm/small_molecule_charmm.ff -> build/lib/vermouth/data/force_fields/charmm 2024-01-31T16:34:58,756 creating build/lib/vermouth/data/force_fields/elnedyn21 2024-01-31T16:34:58,757 copying vermouth/data/force_fields/elnedyn21/aminoacids.ff -> build/lib/vermouth/data/force_fields/elnedyn21 2024-01-31T16:34:58,759 copying vermouth/data/force_fields/elnedyn21/citations.bib -> build/lib/vermouth/data/force_fields/elnedyn21 2024-01-31T16:34:58,761 copying vermouth/data/force_fields/elnedyn21/general.ff -> build/lib/vermouth/data/force_fields/elnedyn21 2024-01-31T16:34:58,763 copying vermouth/data/force_fields/elnedyn21/modifications.ff -> build/lib/vermouth/data/force_fields/elnedyn21 2024-01-31T16:34:58,765 creating build/lib/vermouth/data/force_fields/elnedyn22 2024-01-31T16:34:58,766 copying vermouth/data/force_fields/elnedyn22/aminoacids.ff -> build/lib/vermouth/data/force_fields/elnedyn22 2024-01-31T16:34:58,769 copying vermouth/data/force_fields/elnedyn22/citations.bib -> build/lib/vermouth/data/force_fields/elnedyn22 2024-01-31T16:34:58,771 copying vermouth/data/force_fields/elnedyn22/general.ff -> build/lib/vermouth/data/force_fields/elnedyn22 2024-01-31T16:34:58,773 copying vermouth/data/force_fields/elnedyn22/modifications.ff -> build/lib/vermouth/data/force_fields/elnedyn22 2024-01-31T16:34:58,775 creating build/lib/vermouth/data/force_fields/elnedyn22p 2024-01-31T16:34:58,775 copying vermouth/data/force_fields/elnedyn22p/aminoacids.ff -> build/lib/vermouth/data/force_fields/elnedyn22p 2024-01-31T16:34:58,778 copying vermouth/data/force_fields/elnedyn22p/citations.bib -> build/lib/vermouth/data/force_fields/elnedyn22p 2024-01-31T16:34:58,780 copying vermouth/data/force_fields/elnedyn22p/general.ff -> build/lib/vermouth/data/force_fields/elnedyn22p 2024-01-31T16:34:58,782 copying vermouth/data/force_fields/elnedyn22p/modifications.ff -> build/lib/vermouth/data/force_fields/elnedyn22p 2024-01-31T16:34:58,784 creating build/lib/vermouth/data/force_fields/gromos 2024-01-31T16:34:58,785 copying vermouth/data/force_fields/gromos/aminoacids.rtp -> build/lib/vermouth/data/force_fields/gromos 2024-01-31T16:34:58,790 copying vermouth/data/force_fields/gromos/cofactors.ff -> build/lib/vermouth/data/force_fields/gromos 2024-01-31T16:34:58,792 copying vermouth/data/force_fields/gromos/modifications.ff -> build/lib/vermouth/data/force_fields/gromos 2024-01-31T16:34:58,794 creating build/lib/vermouth/data/force_fields/martini22 2024-01-31T16:34:58,795 copying vermouth/data/force_fields/martini22/aminoacids.ff -> build/lib/vermouth/data/force_fields/martini22 2024-01-31T16:34:58,798 copying vermouth/data/force_fields/martini22/citations.bib -> build/lib/vermouth/data/force_fields/martini22 2024-01-31T16:34:58,800 copying vermouth/data/force_fields/martini22/general.ff -> build/lib/vermouth/data/force_fields/martini22 2024-01-31T16:34:58,801 copying vermouth/data/force_fields/martini22/modifications.ff -> build/lib/vermouth/data/force_fields/martini22 2024-01-31T16:34:58,803 copying vermouth/data/force_fields/martini22/nucleotides.ff -> build/lib/vermouth/data/force_fields/martini22 2024-01-31T16:34:58,806 creating build/lib/vermouth/data/force_fields/martini22p 2024-01-31T16:34:58,806 copying vermouth/data/force_fields/martini22p/aminoacids.ff -> build/lib/vermouth/data/force_fields/martini22p 2024-01-31T16:34:58,809 copying vermouth/data/force_fields/martini22p/citations.bib -> build/lib/vermouth/data/force_fields/martini22p 2024-01-31T16:34:58,811 copying vermouth/data/force_fields/martini22p/general.ff -> build/lib/vermouth/data/force_fields/martini22p 2024-01-31T16:34:58,813 copying vermouth/data/force_fields/martini22p/modifications.ff -> build/lib/vermouth/data/force_fields/martini22p 2024-01-31T16:34:58,815 creating build/lib/vermouth/data/force_fields/martini3001 2024-01-31T16:34:58,816 copying vermouth/data/force_fields/martini3001/aminoacids.ff -> build/lib/vermouth/data/force_fields/martini3001 2024-01-31T16:34:58,819 copying vermouth/data/force_fields/martini3001/citations.bib -> build/lib/vermouth/data/force_fields/martini3001 2024-01-31T16:34:58,821 copying vermouth/data/force_fields/martini3001/general.ff -> build/lib/vermouth/data/force_fields/martini3001 2024-01-31T16:34:58,823 copying vermouth/data/force_fields/martini3001/modifications.ff -> build/lib/vermouth/data/force_fields/martini3001 2024-01-31T16:34:58,825 copying vermouth/data/force_fields/martini3001/small_molecule_martini3.ff -> build/lib/vermouth/data/force_fields/martini3001 2024-01-31T16:34:58,827 creating build/lib/vermouth/data/force_fields/martini30b32 2024-01-31T16:34:58,828 copying vermouth/data/force_fields/martini30b32/aminoacids.ff -> build/lib/vermouth/data/force_fields/martini30b32 2024-01-31T16:34:58,831 copying vermouth/data/force_fields/martini30b32/citations.bib -> build/lib/vermouth/data/force_fields/martini30b32 2024-01-31T16:34:58,833 copying vermouth/data/force_fields/martini30b32/modifications.ff -> build/lib/vermouth/data/force_fields/martini30b32 2024-01-31T16:34:58,835 copying vermouth/data/force_fields/martini30b32/small_molecules.ff -> build/lib/vermouth/data/force_fields/martini30b32 2024-01-31T16:34:58,837 creating build/lib/vermouth/data/force_fields/martini30dev 2024-01-31T16:34:58,837 copying vermouth/data/force_fields/martini30dev/aminoacids.ff -> build/lib/vermouth/data/force_fields/martini30dev 2024-01-31T16:34:58,841 copying vermouth/data/force_fields/martini30dev/citations.bib -> build/lib/vermouth/data/force_fields/martini30dev 2024-01-31T16:34:58,843 copying vermouth/data/force_fields/martini30dev/modifications.ff -> build/lib/vermouth/data/force_fields/martini30dev 2024-01-31T16:34:58,844 creating build/lib/vermouth/data/mappings 2024-01-31T16:34:58,845 copying vermouth/data/mappings/ala.charmm36.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,847 copying vermouth/data/mappings/ala.gromos.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,849 copying vermouth/data/mappings/arg.charmm36.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,851 copying vermouth/data/mappings/arg.charmm36.martini22p.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,853 copying vermouth/data/mappings/arg.gromos.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,855 copying vermouth/data/mappings/asn.charmm36.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,857 copying vermouth/data/mappings/asn.charmm36.martini22p.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,859 copying vermouth/data/mappings/asn.gromos.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,860 copying vermouth/data/mappings/asp.charmm36.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,862 copying vermouth/data/mappings/asp.charmm36.martini22p.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,864 copying vermouth/data/mappings/asp.gromos.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,866 copying vermouth/data/mappings/asp0.gromos.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,868 copying vermouth/data/mappings/chol.charmm36.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,870 copying vermouth/data/mappings/cys.charmm36.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,872 copying vermouth/data/mappings/cys.gromos.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,874 copying vermouth/data/mappings/dmpc.charmm36.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,876 copying vermouth/data/mappings/dopc.charmm36.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,878 copying vermouth/data/mappings/dppc.charmm36.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,881 copying vermouth/data/mappings/dppg.charmm36.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,883 copying vermouth/data/mappings/fmn.gromos.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,885 copying vermouth/data/mappings/gln.charmm36.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,886 copying vermouth/data/mappings/gln.charmm36.martini22p.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,888 copying vermouth/data/mappings/gln.gromos.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,890 copying vermouth/data/mappings/glu.charmm36.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,892 copying vermouth/data/mappings/glu.charmm36.martini22p.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,894 copying vermouth/data/mappings/glu.gromos.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,896 copying vermouth/data/mappings/glu0.gromos.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,898 copying vermouth/data/mappings/gly.charmm36.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,900 copying vermouth/data/mappings/gly.gromos.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,901 copying vermouth/data/mappings/his.charmm36.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,903 copying vermouth/data/mappings/his.gromos.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,905 copying vermouth/data/mappings/hsd.charmm36.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,907 copying vermouth/data/mappings/hse.charmm36.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,909 copying vermouth/data/mappings/hsp.charmm36.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,911 copying vermouth/data/mappings/ile.charmm36.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,913 copying vermouth/data/mappings/ile.gromos.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,915 copying vermouth/data/mappings/leu.charmm36.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,916 copying vermouth/data/mappings/leu.gromos.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,918 copying vermouth/data/mappings/lys.charmm36.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,920 copying vermouth/data/mappings/lys.charmm36.martini22p.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,922 copying vermouth/data/mappings/lys.gromos.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,924 copying vermouth/data/mappings/met.charmm36.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,925 copying vermouth/data/mappings/met.gromos.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,927 copying vermouth/data/mappings/modifications.gromos.mapping -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,929 copying vermouth/data/mappings/modifications.mapping -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,931 copying vermouth/data/mappings/nad.gromos.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,933 copying vermouth/data/mappings/phe.charmm36.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,935 copying vermouth/data/mappings/phe.gromos.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,936 copying vermouth/data/mappings/popc.charmm36.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,939 copying vermouth/data/mappings/pope.charmm36.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,941 copying vermouth/data/mappings/popg.charmm36.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,943 copying vermouth/data/mappings/pops.charmm36.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,945 copying vermouth/data/mappings/pro.charmm36.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,947 copying vermouth/data/mappings/pro.gromos.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,949 copying vermouth/data/mappings/ser.charmm36.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,951 copying vermouth/data/mappings/ser.charmm36.martini22p.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,953 copying vermouth/data/mappings/ser.gromos.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,955 copying vermouth/data/mappings/thr.charmm36.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,957 copying vermouth/data/mappings/thr.charmm36.martini22p.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,958 copying vermouth/data/mappings/thr.gromos.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,960 copying vermouth/data/mappings/tpp.gromos.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,962 copying vermouth/data/mappings/trp.charmm36.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,964 copying vermouth/data/mappings/trp.gromos.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,966 copying vermouth/data/mappings/tyr.charmm36.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,968 copying vermouth/data/mappings/tyr.gromos.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,970 copying vermouth/data/mappings/val.charmm36.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,972 copying vermouth/data/mappings/val.gromos.map -> build/lib/vermouth/data/mappings 2024-01-31T16:34:58,974 creating build/lib/vermouth/data/mappings/elnedyn 2024-01-31T16:34:58,975 copying vermouth/data/mappings/elnedyn/ala.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2024-01-31T16:34:58,977 copying vermouth/data/mappings/elnedyn/arg.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2024-01-31T16:34:58,979 copying vermouth/data/mappings/elnedyn/asn.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2024-01-31T16:34:58,981 copying vermouth/data/mappings/elnedyn/asp.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2024-01-31T16:34:58,983 copying vermouth/data/mappings/elnedyn/chol.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2024-01-31T16:34:58,985 copying vermouth/data/mappings/elnedyn/cys.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2024-01-31T16:34:58,987 copying vermouth/data/mappings/elnedyn/dmpc.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2024-01-31T16:34:58,989 copying vermouth/data/mappings/elnedyn/dopc.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2024-01-31T16:34:58,991 copying vermouth/data/mappings/elnedyn/dppc.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2024-01-31T16:34:58,993 copying vermouth/data/mappings/elnedyn/dppg.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2024-01-31T16:34:58,995 copying vermouth/data/mappings/elnedyn/gln.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2024-01-31T16:34:58,997 copying vermouth/data/mappings/elnedyn/glu.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2024-01-31T16:34:58,999 copying vermouth/data/mappings/elnedyn/gly.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,001 copying vermouth/data/mappings/elnedyn/his.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,003 copying vermouth/data/mappings/elnedyn/ile.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,005 copying vermouth/data/mappings/elnedyn/leu.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,007 copying vermouth/data/mappings/elnedyn/lys.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,009 copying vermouth/data/mappings/elnedyn/met.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,011 copying vermouth/data/mappings/elnedyn/modifications.elnedyn21.mapping -> build/lib/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,013 copying vermouth/data/mappings/elnedyn/modifications.elnedyn22.mapping -> build/lib/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,015 copying vermouth/data/mappings/elnedyn/modifications.elnedyn22p.mapping -> build/lib/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,017 copying vermouth/data/mappings/elnedyn/phe.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,019 copying vermouth/data/mappings/elnedyn/popc.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,021 copying vermouth/data/mappings/elnedyn/pope.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,023 copying vermouth/data/mappings/elnedyn/popg.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,025 copying vermouth/data/mappings/elnedyn/pops.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,027 copying vermouth/data/mappings/elnedyn/pro.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,029 copying vermouth/data/mappings/elnedyn/ser.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,031 copying vermouth/data/mappings/elnedyn/thr.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,033 copying vermouth/data/mappings/elnedyn/trp.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,035 copying vermouth/data/mappings/elnedyn/tyr.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,037 copying vermouth/data/mappings/elnedyn/val.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,039 creating build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2024-01-31T16:34:59,040 copying vermouth/data/mappings/elnedyn/elnedyn22p/arg.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2024-01-31T16:34:59,042 copying vermouth/data/mappings/elnedyn/elnedyn22p/asn.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2024-01-31T16:34:59,044 copying vermouth/data/mappings/elnedyn/elnedyn22p/asp.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2024-01-31T16:34:59,045 copying vermouth/data/mappings/elnedyn/elnedyn22p/gln.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2024-01-31T16:34:59,047 copying vermouth/data/mappings/elnedyn/elnedyn22p/glu.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2024-01-31T16:34:59,049 copying vermouth/data/mappings/elnedyn/elnedyn22p/lys.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2024-01-31T16:34:59,051 copying vermouth/data/mappings/elnedyn/elnedyn22p/ser.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2024-01-31T16:34:59,053 copying vermouth/data/mappings/elnedyn/elnedyn22p/thr.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2024-01-31T16:34:59,054 creating build/lib/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,055 copying vermouth/data/mappings/elnedyn21/ala.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,057 copying vermouth/data/mappings/elnedyn21/arg.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,059 copying vermouth/data/mappings/elnedyn21/arg.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,061 copying vermouth/data/mappings/elnedyn21/asn.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,063 copying vermouth/data/mappings/elnedyn21/asn.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,065 copying vermouth/data/mappings/elnedyn21/asp.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,067 copying vermouth/data/mappings/elnedyn21/asp.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,069 copying vermouth/data/mappings/elnedyn21/cys.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,071 copying vermouth/data/mappings/elnedyn21/gln.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,072 copying vermouth/data/mappings/elnedyn21/gln.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,074 copying vermouth/data/mappings/elnedyn21/glu.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,076 copying vermouth/data/mappings/elnedyn21/glu.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,078 copying vermouth/data/mappings/elnedyn21/gly.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,080 copying vermouth/data/mappings/elnedyn21/his.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,082 copying vermouth/data/mappings/elnedyn21/ile.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,084 copying vermouth/data/mappings/elnedyn21/leu.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,085 copying vermouth/data/mappings/elnedyn21/lys.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,087 copying vermouth/data/mappings/elnedyn21/lys.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,090 copying vermouth/data/mappings/elnedyn21/met.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,091 copying vermouth/data/mappings/elnedyn21/modifications.mapping -> build/lib/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,093 copying vermouth/data/mappings/elnedyn21/phe.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,095 copying vermouth/data/mappings/elnedyn21/pro.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,097 copying vermouth/data/mappings/elnedyn21/ser.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,099 copying vermouth/data/mappings/elnedyn21/ser.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,101 copying vermouth/data/mappings/elnedyn21/thr.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,103 copying vermouth/data/mappings/elnedyn21/thr.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,105 copying vermouth/data/mappings/elnedyn21/trp.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,106 copying vermouth/data/mappings/elnedyn21/tyr.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,108 copying vermouth/data/mappings/elnedyn21/val.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,110 creating build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,111 copying vermouth/data/mappings/martini3001/ala.amber.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,113 copying vermouth/data/mappings/martini3001/ala.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,115 copying vermouth/data/mappings/martini3001/antr.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,117 copying vermouth/data/mappings/martini3001/arg.amber.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,118 copying vermouth/data/mappings/martini3001/arg.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,120 copying vermouth/data/mappings/martini3001/ash.amber.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,122 copying vermouth/data/mappings/martini3001/asn.amber.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,124 copying vermouth/data/mappings/martini3001/asn.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,126 copying vermouth/data/mappings/martini3001/asp.amber.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,128 copying vermouth/data/mappings/martini3001/asp.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,130 copying vermouth/data/mappings/martini3001/aspp.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,132 copying vermouth/data/mappings/martini3001/bald.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,134 copying vermouth/data/mappings/martini3001/benz.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,136 copying vermouth/data/mappings/martini3001/c3.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,138 copying vermouth/data/mappings/martini3001/chxe.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,140 copying vermouth/data/mappings/martini3001/cpen.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,142 copying vermouth/data/mappings/martini3001/cume.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,144 copying vermouth/data/mappings/martini3001/cys.amber.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,146 copying vermouth/data/mappings/martini3001/cys.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,148 copying vermouth/data/mappings/martini3001/diol.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,149 copying vermouth/data/mappings/martini3001/diox.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,152 copying vermouth/data/mappings/martini3001/dman.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,154 copying vermouth/data/mappings/martini3001/eben.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,156 copying vermouth/data/mappings/martini3001/fura.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,157 copying vermouth/data/mappings/martini3001/glh.amber.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,159 copying vermouth/data/mappings/martini3001/gln.amber.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,161 copying vermouth/data/mappings/martini3001/gln.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,163 copying vermouth/data/mappings/martini3001/glu.amber.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,165 copying vermouth/data/mappings/martini3001/glu.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,166 copying vermouth/data/mappings/martini3001/glup.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,168 copying vermouth/data/mappings/martini3001/gly.amber.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,170 copying vermouth/data/mappings/martini3001/gly.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,172 copying vermouth/data/mappings/martini3001/hid.amber.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,174 copying vermouth/data/mappings/martini3001/hie.amber.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,176 copying vermouth/data/mappings/martini3001/hip.amber.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,177 copying vermouth/data/mappings/martini3001/his.amber.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,179 copying vermouth/data/mappings/martini3001/his.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,181 copying vermouth/data/mappings/martini3001/hsd.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,183 copying vermouth/data/mappings/martini3001/hse.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,185 copying vermouth/data/mappings/martini3001/hsp.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,187 copying vermouth/data/mappings/martini3001/ile.amber.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,189 copying vermouth/data/mappings/martini3001/ile.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,191 copying vermouth/data/mappings/martini3001/imia.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,193 copying vermouth/data/mappings/martini3001/inda.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,195 copying vermouth/data/mappings/martini3001/indo.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,197 copying vermouth/data/mappings/martini3001/leu.amber.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,200 copying vermouth/data/mappings/martini3001/leu.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,202 copying vermouth/data/mappings/martini3001/lsn.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,205 copying vermouth/data/mappings/martini3001/lyn.amber.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,207 copying vermouth/data/mappings/martini3001/lys.amber.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,210 copying vermouth/data/mappings/martini3001/lys.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,213 copying vermouth/data/mappings/martini3001/mboa.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,215 copying vermouth/data/mappings/martini3001/mcpe.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,218 copying vermouth/data/mappings/martini3001/meob.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,220 copying vermouth/data/mappings/martini3001/met.amber.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,223 copying vermouth/data/mappings/martini3001/met.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,225 copying vermouth/data/mappings/martini3001/mind.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,227 copying vermouth/data/mappings/martini3001/modifications.amber.mapping -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,230 copying vermouth/data/mappings/martini3001/modifications.charmm36.mapping -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,233 copying vermouth/data/mappings/martini3001/mxyl.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,236 copying vermouth/data/mappings/martini3001/naft.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,238 copying vermouth/data/mappings/martini3001/nitb.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,240 copying vermouth/data/mappings/martini3001/oxyl.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,243 copying vermouth/data/mappings/martini3001/pcro.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,245 copying vermouth/data/mappings/martini3001/phe.amber.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,248 copying vermouth/data/mappings/martini3001/phe.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,250 copying vermouth/data/mappings/martini3001/phen.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,252 copying vermouth/data/mappings/martini3001/phmk.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,255 copying vermouth/data/mappings/martini3001/prld.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,257 copying vermouth/data/mappings/martini3001/pro.amber.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,260 copying vermouth/data/mappings/martini3001/pro.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,262 copying vermouth/data/mappings/martini3001/pxyl.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,264 copying vermouth/data/mappings/martini3001/pyr1.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,267 copying vermouth/data/mappings/martini3001/pyrd.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,269 copying vermouth/data/mappings/martini3001/pyrl.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,272 copying vermouth/data/mappings/martini3001/pyrm.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,274 copying vermouth/data/mappings/martini3001/qinl.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,277 copying vermouth/data/mappings/martini3001/ser.amber.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,279 copying vermouth/data/mappings/martini3001/ser.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,282 copying vermouth/data/mappings/martini3001/sm139.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,284 copying vermouth/data/mappings/martini3001/styr.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,287 copying vermouth/data/mappings/martini3001/thaz.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,290 copying vermouth/data/mappings/martini3001/thf.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,292 copying vermouth/data/mappings/martini3001/thip.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,295 copying vermouth/data/mappings/martini3001/thp.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,297 copying vermouth/data/mappings/martini3001/thr.amber.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,299 copying vermouth/data/mappings/martini3001/thr.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,301 copying vermouth/data/mappings/martini3001/tolu.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,303 copying vermouth/data/mappings/martini3001/trp.amber.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,305 copying vermouth/data/mappings/martini3001/trp.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,306 copying vermouth/data/mappings/martini3001/tyr.amber.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,308 copying vermouth/data/mappings/martini3001/tyr.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,310 copying vermouth/data/mappings/martini3001/val.amber.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,312 copying vermouth/data/mappings/martini3001/val.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,314 copying vermouth/data/mappings/martini3001/zimi.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,315 copying vermouth/data/mappings/martini3001/zthp.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,317 copying vermouth/data/mappings/martini3001/zthz.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,319 creating build/lib/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,320 copying vermouth/data/mappings/martini30b32/ala.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,322 copying vermouth/data/mappings/martini30b32/arg.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,324 copying vermouth/data/mappings/martini30b32/asn.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,326 copying vermouth/data/mappings/martini30b32/asp.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,327 copying vermouth/data/mappings/martini30b32/benz.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,329 copying vermouth/data/mappings/martini30b32/cys.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,331 copying vermouth/data/mappings/martini30b32/gln.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,333 copying vermouth/data/mappings/martini30b32/glu.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,335 copying vermouth/data/mappings/martini30b32/gly.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,337 copying vermouth/data/mappings/martini30b32/his.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,339 copying vermouth/data/mappings/martini30b32/hsd.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,341 copying vermouth/data/mappings/martini30b32/ile.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,343 copying vermouth/data/mappings/martini30b32/leu.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,345 copying vermouth/data/mappings/martini30b32/lys.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,347 copying vermouth/data/mappings/martini30b32/met.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,349 copying vermouth/data/mappings/martini30b32/modifications.mapping -> build/lib/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,351 copying vermouth/data/mappings/martini30b32/phe.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,353 copying vermouth/data/mappings/martini30b32/pro.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,354 copying vermouth/data/mappings/martini30b32/ser.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,356 copying vermouth/data/mappings/martini30b32/thr.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,358 copying vermouth/data/mappings/martini30b32/trp.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,360 copying vermouth/data/mappings/martini30b32/tyr.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,362 copying vermouth/data/mappings/martini30b32/val.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,364 creating build/lib/vermouth/graphing 2024-01-31T16:34:59,365 copying vermouth/graphing/grappa.py -> build/lib/vermouth/graphing 2024-01-31T16:34:59,520 running build_scripts 2024-01-31T16:34:59,521 creating build/scripts-3.11 2024-01-31T16:34:59,522 copying and adjusting bin/martinize2 -> build/scripts-3.11 2024-01-31T16:34:59,525 changing mode of build/scripts-3.11/martinize2 from 644 to 755 2024-01-31T16:34:59,526 installing to build/bdist.linux-armv7l/wheel 2024-01-31T16:34:59,526 running install 2024-01-31T16:34:59,564 [pbr] Generating AUTHORS 2024-01-31T16:34:59,570 [pbr] AUTHORS complete (0.0s) 2024-01-31T16:34:59,570 running install_lib 2024-01-31T16:34:59,577 creating build/bdist.linux-armv7l 2024-01-31T16:34:59,578 creating build/bdist.linux-armv7l/wheel 2024-01-31T16:34:59,579 creating build/bdist.linux-armv7l/wheel/vermouth 2024-01-31T16:34:59,580 copying build/lib/vermouth/edge_tuning.py -> build/bdist.linux-armv7l/wheel/vermouth 2024-01-31T16:34:59,583 copying build/lib/vermouth/molecule.py -> build/bdist.linux-armv7l/wheel/vermouth 2024-01-31T16:34:59,586 copying build/lib/vermouth/map_input.py -> build/bdist.linux-armv7l/wheel/vermouth 2024-01-31T16:34:59,589 creating build/bdist.linux-armv7l/wheel/vermouth/processors 2024-01-31T16:34:59,590 copying build/lib/vermouth/processors/do_links.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2024-01-31T16:34:59,593 copying build/lib/vermouth/processors/gro_reader.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2024-01-31T16:34:59,594 copying build/lib/vermouth/processors/make_bonds.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2024-01-31T16:34:59,597 copying build/lib/vermouth/processors/repair_graph.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2024-01-31T16:34:59,599 copying build/lib/vermouth/processors/do_mapping.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2024-01-31T16:34:59,603 copying build/lib/vermouth/processors/apply_rubber_band.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2024-01-31T16:34:59,605 copying build/lib/vermouth/processors/rename_modified_residues.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2024-01-31T16:34:59,607 copying build/lib/vermouth/processors/quote.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2024-01-31T16:34:59,609 copying build/lib/vermouth/processors/canonicalize_modifications.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2024-01-31T16:34:59,611 copying build/lib/vermouth/processors/locate_charge_dummies.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2024-01-31T16:34:59,614 copying build/lib/vermouth/processors/merge_all_molecules.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2024-01-31T16:34:59,615 copying build/lib/vermouth/processors/water_bias.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2024-01-31T16:34:59,617 copying build/lib/vermouth/processors/average_beads.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2024-01-31T16:34:59,619 copying build/lib/vermouth/processors/attach_mass.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2024-01-31T16:34:59,621 copying build/lib/vermouth/processors/name_moltype.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2024-01-31T16:34:59,623 copying build/lib/vermouth/processors/pdb_reader.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2024-01-31T16:34:59,625 copying build/lib/vermouth/processors/apply_posres.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2024-01-31T16:34:59,626 copying build/lib/vermouth/processors/set_molecule_meta.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2024-01-31T16:34:59,628 copying build/lib/vermouth/processors/add_molecule_edges.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2024-01-31T16:34:59,630 copying build/lib/vermouth/processors/processor.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2024-01-31T16:34:59,632 copying build/lib/vermouth/processors/tune_cystein_bridges.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2024-01-31T16:34:59,633 copying build/lib/vermouth/processors/merge_chains.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2024-01-31T16:34:59,635 copying build/lib/vermouth/processors/sort_molecule_atoms.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2024-01-31T16:34:59,637 copying build/lib/vermouth/processors/annotate_mut_mod.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2024-01-31T16:34:59,639 copying build/lib/vermouth/processors/__init__.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2024-01-31T16:34:59,641 creating build/bdist.linux-armv7l/wheel/vermouth/data 2024-01-31T16:34:59,643 creating build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:34:59,645 creating build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,646 copying build/lib/vermouth/data/mappings/elnedyn/modifications.elnedyn22p.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,648 copying build/lib/vermouth/data/mappings/elnedyn/popc.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,650 copying build/lib/vermouth/data/mappings/elnedyn/his.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,652 copying build/lib/vermouth/data/mappings/elnedyn/val.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,654 copying build/lib/vermouth/data/mappings/elnedyn/leu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,656 copying build/lib/vermouth/data/mappings/elnedyn/dmpc.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,658 copying build/lib/vermouth/data/mappings/elnedyn/ala.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,659 copying build/lib/vermouth/data/mappings/elnedyn/phe.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,662 creating build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2024-01-31T16:34:59,663 copying build/lib/vermouth/data/mappings/elnedyn/elnedyn22p/gln.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2024-01-31T16:34:59,665 copying build/lib/vermouth/data/mappings/elnedyn/elnedyn22p/glu.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2024-01-31T16:34:59,666 copying build/lib/vermouth/data/mappings/elnedyn/elnedyn22p/arg.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2024-01-31T16:34:59,668 copying build/lib/vermouth/data/mappings/elnedyn/elnedyn22p/asp.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2024-01-31T16:34:59,670 copying build/lib/vermouth/data/mappings/elnedyn/elnedyn22p/thr.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2024-01-31T16:34:59,672 copying build/lib/vermouth/data/mappings/elnedyn/elnedyn22p/lys.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2024-01-31T16:34:59,674 copying build/lib/vermouth/data/mappings/elnedyn/elnedyn22p/asn.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2024-01-31T16:34:59,675 copying build/lib/vermouth/data/mappings/elnedyn/elnedyn22p/ser.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2024-01-31T16:34:59,677 copying build/lib/vermouth/data/mappings/elnedyn/ile.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,679 copying build/lib/vermouth/data/mappings/elnedyn/dopc.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,681 copying build/lib/vermouth/data/mappings/elnedyn/trp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,683 copying build/lib/vermouth/data/mappings/elnedyn/asn.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,684 copying build/lib/vermouth/data/mappings/elnedyn/thr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,686 copying build/lib/vermouth/data/mappings/elnedyn/modifications.elnedyn22.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,688 copying build/lib/vermouth/data/mappings/elnedyn/pro.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,689 copying build/lib/vermouth/data/mappings/elnedyn/ser.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,691 copying build/lib/vermouth/data/mappings/elnedyn/dppg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,693 copying build/lib/vermouth/data/mappings/elnedyn/met.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,695 copying build/lib/vermouth/data/mappings/elnedyn/chol.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,697 copying build/lib/vermouth/data/mappings/elnedyn/pops.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,699 copying build/lib/vermouth/data/mappings/elnedyn/arg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,701 copying build/lib/vermouth/data/mappings/elnedyn/pope.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,703 copying build/lib/vermouth/data/mappings/elnedyn/gln.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,705 copying build/lib/vermouth/data/mappings/elnedyn/lys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,706 copying build/lib/vermouth/data/mappings/elnedyn/asp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,708 copying build/lib/vermouth/data/mappings/elnedyn/gly.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,710 copying build/lib/vermouth/data/mappings/elnedyn/cys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,712 copying build/lib/vermouth/data/mappings/elnedyn/modifications.elnedyn21.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,714 copying build/lib/vermouth/data/mappings/elnedyn/tyr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,716 copying build/lib/vermouth/data/mappings/elnedyn/popg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,718 copying build/lib/vermouth/data/mappings/elnedyn/dppc.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,720 copying build/lib/vermouth/data/mappings/elnedyn/glu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2024-01-31T16:34:59,721 copying build/lib/vermouth/data/mappings/cys.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:34:59,723 copying build/lib/vermouth/data/mappings/popc.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:34:59,725 copying build/lib/vermouth/data/mappings/asp.charmm36.martini22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:34:59,726 copying build/lib/vermouth/data/mappings/met.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:34:59,728 copying build/lib/vermouth/data/mappings/trp.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:34:59,729 copying build/lib/vermouth/data/mappings/his.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:34:59,731 copying build/lib/vermouth/data/mappings/glu.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:34:59,733 copying build/lib/vermouth/data/mappings/val.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:34:59,734 copying build/lib/vermouth/data/mappings/arg.charmm36.martini22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:34:59,736 copying build/lib/vermouth/data/mappings/nad.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:34:59,738 copying build/lib/vermouth/data/mappings/val.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:34:59,739 copying build/lib/vermouth/data/mappings/leu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:34:59,741 copying build/lib/vermouth/data/mappings/asp0.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:34:59,743 copying build/lib/vermouth/data/mappings/ile.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:34:59,744 copying build/lib/vermouth/data/mappings/tpp.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:34:59,747 creating build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,748 copying build/lib/vermouth/data/mappings/elnedyn21/his.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,750 copying build/lib/vermouth/data/mappings/elnedyn21/gln.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,752 copying build/lib/vermouth/data/mappings/elnedyn21/glu.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,753 copying build/lib/vermouth/data/mappings/elnedyn21/val.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,755 copying build/lib/vermouth/data/mappings/elnedyn21/leu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,757 copying build/lib/vermouth/data/mappings/elnedyn21/ala.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,758 copying build/lib/vermouth/data/mappings/elnedyn21/phe.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,760 copying build/lib/vermouth/data/mappings/elnedyn21/ile.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,762 copying build/lib/vermouth/data/mappings/elnedyn21/modifications.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,764 copying build/lib/vermouth/data/mappings/elnedyn21/trp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,766 copying build/lib/vermouth/data/mappings/elnedyn21/asn.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,767 copying build/lib/vermouth/data/mappings/elnedyn21/thr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,769 copying build/lib/vermouth/data/mappings/elnedyn21/arg.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,770 copying build/lib/vermouth/data/mappings/elnedyn21/pro.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,772 copying build/lib/vermouth/data/mappings/elnedyn21/ser.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,774 copying build/lib/vermouth/data/mappings/elnedyn21/met.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,775 copying build/lib/vermouth/data/mappings/elnedyn21/arg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,777 copying build/lib/vermouth/data/mappings/elnedyn21/gln.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,778 copying build/lib/vermouth/data/mappings/elnedyn21/lys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,780 copying build/lib/vermouth/data/mappings/elnedyn21/asp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,782 copying build/lib/vermouth/data/mappings/elnedyn21/asp.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,784 copying build/lib/vermouth/data/mappings/elnedyn21/thr.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,785 copying build/lib/vermouth/data/mappings/elnedyn21/lys.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,787 copying build/lib/vermouth/data/mappings/elnedyn21/gly.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,789 copying build/lib/vermouth/data/mappings/elnedyn21/cys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,790 copying build/lib/vermouth/data/mappings/elnedyn21/asn.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,792 copying build/lib/vermouth/data/mappings/elnedyn21/tyr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,794 copying build/lib/vermouth/data/mappings/elnedyn21/ser.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,795 copying build/lib/vermouth/data/mappings/elnedyn21/glu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2024-01-31T16:34:59,797 copying build/lib/vermouth/data/mappings/dmpc.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:34:59,799 copying build/lib/vermouth/data/mappings/ala.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:34:59,801 copying build/lib/vermouth/data/mappings/phe.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:34:59,803 copying build/lib/vermouth/data/mappings/lys.charmm36.martini22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:34:59,805 copying build/lib/vermouth/data/mappings/phe.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:34:59,806 copying build/lib/vermouth/data/mappings/ile.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:34:59,808 copying build/lib/vermouth/data/mappings/ser.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:34:59,810 copying build/lib/vermouth/data/mappings/modifications.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:34:59,812 creating build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,813 copying build/lib/vermouth/data/mappings/martini30b32/his.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,815 copying build/lib/vermouth/data/mappings/martini30b32/val.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,817 copying build/lib/vermouth/data/mappings/martini30b32/leu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,818 copying build/lib/vermouth/data/mappings/martini30b32/ala.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,820 copying build/lib/vermouth/data/mappings/martini30b32/phe.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,822 copying build/lib/vermouth/data/mappings/martini30b32/ile.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,823 copying build/lib/vermouth/data/mappings/martini30b32/modifications.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,825 copying build/lib/vermouth/data/mappings/martini30b32/trp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,827 copying build/lib/vermouth/data/mappings/martini30b32/asn.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,829 copying build/lib/vermouth/data/mappings/martini30b32/thr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,830 copying build/lib/vermouth/data/mappings/martini30b32/pro.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,832 copying build/lib/vermouth/data/mappings/martini30b32/ser.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,834 copying build/lib/vermouth/data/mappings/martini30b32/met.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,835 copying build/lib/vermouth/data/mappings/martini30b32/arg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,837 copying build/lib/vermouth/data/mappings/martini30b32/gln.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,839 copying build/lib/vermouth/data/mappings/martini30b32/lys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,841 copying build/lib/vermouth/data/mappings/martini30b32/asp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,842 copying build/lib/vermouth/data/mappings/martini30b32/gly.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,844 copying build/lib/vermouth/data/mappings/martini30b32/benz.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,846 copying build/lib/vermouth/data/mappings/martini30b32/cys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,847 copying build/lib/vermouth/data/mappings/martini30b32/hsd.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,849 copying build/lib/vermouth/data/mappings/martini30b32/tyr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,851 copying build/lib/vermouth/data/mappings/martini30b32/glu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2024-01-31T16:34:59,853 copying build/lib/vermouth/data/mappings/dopc.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:34:59,855 copying build/lib/vermouth/data/mappings/trp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:34:59,857 copying build/lib/vermouth/data/mappings/asn.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:34:59,859 copying build/lib/vermouth/data/mappings/thr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:34:59,861 copying build/lib/vermouth/data/mappings/pro.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:34:59,863 copying build/lib/vermouth/data/mappings/ser.charmm36.martini22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:34:59,864 copying build/lib/vermouth/data/mappings/lys.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:34:59,866 copying build/lib/vermouth/data/mappings/gln.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:34:59,868 copying build/lib/vermouth/data/mappings/ser.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:34:59,869 copying build/lib/vermouth/data/mappings/asn.charmm36.martini22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:34:59,871 copying build/lib/vermouth/data/mappings/dppg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:34:59,873 copying build/lib/vermouth/data/mappings/met.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:34:59,875 copying build/lib/vermouth/data/mappings/chol.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:34:59,877 copying build/lib/vermouth/data/mappings/pops.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:34:59,878 copying build/lib/vermouth/data/mappings/gly.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:34:59,880 copying build/lib/vermouth/data/mappings/arg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:34:59,884 creating build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,885 copying build/lib/vermouth/data/mappings/martini3001/gln.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,887 copying build/lib/vermouth/data/mappings/martini3001/mcpe.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,889 copying build/lib/vermouth/data/mappings/martini3001/his.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,891 copying build/lib/vermouth/data/mappings/martini3001/his.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,893 copying build/lib/vermouth/data/mappings/martini3001/glu.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,895 copying build/lib/vermouth/data/mappings/martini3001/c3.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,897 copying build/lib/vermouth/data/mappings/martini3001/qinl.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,899 copying build/lib/vermouth/data/mappings/martini3001/tyr.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,901 copying build/lib/vermouth/data/mappings/martini3001/glup.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,903 copying build/lib/vermouth/data/mappings/martini3001/zimi.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,905 copying build/lib/vermouth/data/mappings/martini3001/trp.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,907 copying build/lib/vermouth/data/mappings/martini3001/ser.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,909 copying build/lib/vermouth/data/mappings/martini3001/aspp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,910 copying build/lib/vermouth/data/mappings/martini3001/asp.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,912 copying build/lib/vermouth/data/mappings/martini3001/ash.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,914 copying build/lib/vermouth/data/mappings/martini3001/pyrm.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,915 copying build/lib/vermouth/data/mappings/martini3001/phen.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,917 copying build/lib/vermouth/data/mappings/martini3001/diox.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,919 copying build/lib/vermouth/data/mappings/martini3001/prld.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,921 copying build/lib/vermouth/data/mappings/martini3001/thip.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,922 copying build/lib/vermouth/data/mappings/martini3001/cys.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,924 copying build/lib/vermouth/data/mappings/martini3001/val.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,926 copying build/lib/vermouth/data/mappings/martini3001/phe.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,928 copying build/lib/vermouth/data/mappings/martini3001/leu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,930 copying build/lib/vermouth/data/mappings/martini3001/thr.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,932 copying build/lib/vermouth/data/mappings/martini3001/diol.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,934 copying build/lib/vermouth/data/mappings/martini3001/zthz.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,936 copying build/lib/vermouth/data/mappings/martini3001/naft.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,938 copying build/lib/vermouth/data/mappings/martini3001/inda.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,940 copying build/lib/vermouth/data/mappings/martini3001/hip.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,942 copying build/lib/vermouth/data/mappings/martini3001/thaz.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,944 copying build/lib/vermouth/data/mappings/martini3001/ala.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,946 copying build/lib/vermouth/data/mappings/martini3001/phe.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,948 copying build/lib/vermouth/data/mappings/martini3001/pyrl.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,950 copying build/lib/vermouth/data/mappings/martini3001/ile.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,952 copying build/lib/vermouth/data/mappings/martini3001/ile.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,954 copying build/lib/vermouth/data/mappings/martini3001/antr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,955 copying build/lib/vermouth/data/mappings/martini3001/bald.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,957 copying build/lib/vermouth/data/mappings/martini3001/meob.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,959 copying build/lib/vermouth/data/mappings/martini3001/tolu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,961 copying build/lib/vermouth/data/mappings/martini3001/trp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,962 copying build/lib/vermouth/data/mappings/martini3001/asn.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,964 copying build/lib/vermouth/data/mappings/martini3001/lys.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,966 copying build/lib/vermouth/data/mappings/martini3001/ala.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,967 copying build/lib/vermouth/data/mappings/martini3001/mxyl.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,969 copying build/lib/vermouth/data/mappings/martini3001/thr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,971 copying build/lib/vermouth/data/mappings/martini3001/leu.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,973 copying build/lib/vermouth/data/mappings/martini3001/fura.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,975 copying build/lib/vermouth/data/mappings/martini3001/cume.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,977 copying build/lib/vermouth/data/mappings/martini3001/chxe.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,979 copying build/lib/vermouth/data/mappings/martini3001/val.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,981 copying build/lib/vermouth/data/mappings/martini3001/pyrd.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,982 copying build/lib/vermouth/data/mappings/martini3001/pro.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,984 copying build/lib/vermouth/data/mappings/martini3001/glh.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,986 copying build/lib/vermouth/data/mappings/martini3001/styr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,988 copying build/lib/vermouth/data/mappings/martini3001/gly.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,990 copying build/lib/vermouth/data/mappings/martini3001/ser.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,991 copying build/lib/vermouth/data/mappings/martini3001/pro.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,993 copying build/lib/vermouth/data/mappings/martini3001/zthp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,995 copying build/lib/vermouth/data/mappings/martini3001/met.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,997 copying build/lib/vermouth/data/mappings/martini3001/nitb.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:34:59,998 copying build/lib/vermouth/data/mappings/martini3001/hid.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:35:00,000 copying build/lib/vermouth/data/mappings/martini3001/modifications.amber.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:35:00,003 copying build/lib/vermouth/data/mappings/martini3001/arg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:35:00,005 copying build/lib/vermouth/data/mappings/martini3001/dman.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:35:00,007 copying build/lib/vermouth/data/mappings/martini3001/pcro.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:35:00,009 copying build/lib/vermouth/data/mappings/martini3001/hsp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:35:00,012 copying build/lib/vermouth/data/mappings/martini3001/thf.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:35:00,014 copying build/lib/vermouth/data/mappings/martini3001/eben.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:35:00,016 copying build/lib/vermouth/data/mappings/martini3001/gln.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:35:00,018 copying build/lib/vermouth/data/mappings/martini3001/met.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:35:00,020 copying build/lib/vermouth/data/mappings/martini3001/lys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:35:00,023 copying build/lib/vermouth/data/mappings/martini3001/asp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:35:00,025 copying build/lib/vermouth/data/mappings/martini3001/asn.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:35:00,027 copying build/lib/vermouth/data/mappings/martini3001/thp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:35:00,029 copying build/lib/vermouth/data/mappings/martini3001/hie.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:35:00,032 copying build/lib/vermouth/data/mappings/martini3001/modifications.charmm36.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:35:00,034 copying build/lib/vermouth/data/mappings/martini3001/lsn.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:35:00,037 copying build/lib/vermouth/data/mappings/martini3001/mind.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:35:00,039 copying build/lib/vermouth/data/mappings/martini3001/mboa.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:35:00,041 copying build/lib/vermouth/data/mappings/martini3001/oxyl.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:35:00,044 copying build/lib/vermouth/data/mappings/martini3001/indo.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:35:00,046 copying build/lib/vermouth/data/mappings/martini3001/gly.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:35:00,048 copying build/lib/vermouth/data/mappings/martini3001/cpen.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:35:00,050 copying build/lib/vermouth/data/mappings/martini3001/benz.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:35:00,053 copying build/lib/vermouth/data/mappings/martini3001/cys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:35:00,055 copying build/lib/vermouth/data/mappings/martini3001/pyr1.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:35:00,057 copying build/lib/vermouth/data/mappings/martini3001/lyn.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:35:00,059 copying build/lib/vermouth/data/mappings/martini3001/imia.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:35:00,061 copying build/lib/vermouth/data/mappings/martini3001/pxyl.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:35:00,063 copying build/lib/vermouth/data/mappings/martini3001/phmk.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:35:00,066 copying build/lib/vermouth/data/mappings/martini3001/hsd.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:35:00,068 copying build/lib/vermouth/data/mappings/martini3001/sm139.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:35:00,070 copying build/lib/vermouth/data/mappings/martini3001/tyr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:35:00,072 copying build/lib/vermouth/data/mappings/martini3001/arg.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:35:00,074 copying build/lib/vermouth/data/mappings/martini3001/hse.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:35:00,077 copying build/lib/vermouth/data/mappings/martini3001/glu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2024-01-31T16:35:00,079 copying build/lib/vermouth/data/mappings/pope.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:35:00,081 copying build/lib/vermouth/data/mappings/asn.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:35:00,083 copying build/lib/vermouth/data/mappings/pro.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:35:00,085 copying build/lib/vermouth/data/mappings/hsp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:35:00,088 copying build/lib/vermouth/data/mappings/gln.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:35:00,090 copying build/lib/vermouth/data/mappings/fmn.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:35:00,092 copying build/lib/vermouth/data/mappings/lys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:35:00,094 copying build/lib/vermouth/data/mappings/gln.charmm36.martini22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:35:00,096 copying build/lib/vermouth/data/mappings/thr.charmm36.martini22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:35:00,098 copying build/lib/vermouth/data/mappings/asp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:35:00,101 copying build/lib/vermouth/data/mappings/arg.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:35:00,102 copying build/lib/vermouth/data/mappings/glu.charmm36.martini22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:35:00,104 copying build/lib/vermouth/data/mappings/gly.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:35:00,106 copying build/lib/vermouth/data/mappings/his.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:35:00,108 copying build/lib/vermouth/data/mappings/glu0.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:35:00,109 copying build/lib/vermouth/data/mappings/tyr.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:35:00,111 copying build/lib/vermouth/data/mappings/cys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:35:00,112 copying build/lib/vermouth/data/mappings/thr.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:35:00,114 copying build/lib/vermouth/data/mappings/asp.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:35:00,116 copying build/lib/vermouth/data/mappings/leu.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:35:00,117 copying build/lib/vermouth/data/mappings/hsd.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:35:00,119 copying build/lib/vermouth/data/mappings/ala.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:35:00,120 copying build/lib/vermouth/data/mappings/tyr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:35:00,122 copying build/lib/vermouth/data/mappings/popg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:35:00,124 copying build/lib/vermouth/data/mappings/dppc.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:35:00,126 copying build/lib/vermouth/data/mappings/hse.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:35:00,128 copying build/lib/vermouth/data/mappings/glu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:35:00,129 copying build/lib/vermouth/data/mappings/modifications.gromos.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2024-01-31T16:35:00,132 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields 2024-01-31T16:35:00,133 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/amber 2024-01-31T16:35:00,134 copying build/lib/vermouth/data/force_fields/amber/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/amber 2024-01-31T16:35:00,136 copying build/lib/vermouth/data/force_fields/amber/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/amber 2024-01-31T16:35:00,139 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30dev 2024-01-31T16:35:00,140 copying build/lib/vermouth/data/force_fields/martini30dev/citations.bib -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30dev 2024-01-31T16:35:00,142 copying build/lib/vermouth/data/force_fields/martini30dev/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30dev 2024-01-31T16:35:00,143 copying build/lib/vermouth/data/force_fields/martini30dev/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30dev 2024-01-31T16:35:00,146 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22 2024-01-31T16:35:00,147 copying build/lib/vermouth/data/force_fields/elnedyn22/general.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22 2024-01-31T16:35:00,149 copying build/lib/vermouth/data/force_fields/elnedyn22/citations.bib -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22 2024-01-31T16:35:00,151 copying build/lib/vermouth/data/force_fields/elnedyn22/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22 2024-01-31T16:35:00,153 copying build/lib/vermouth/data/force_fields/elnedyn22/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22 2024-01-31T16:35:00,156 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22p 2024-01-31T16:35:00,157 copying build/lib/vermouth/data/force_fields/martini22p/general.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22p 2024-01-31T16:35:00,159 copying build/lib/vermouth/data/force_fields/martini22p/citations.bib -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22p 2024-01-31T16:35:00,160 copying build/lib/vermouth/data/force_fields/martini22p/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22p 2024-01-31T16:35:00,162 copying build/lib/vermouth/data/force_fields/martini22p/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22p 2024-01-31T16:35:00,165 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/gromos 2024-01-31T16:35:00,166 copying build/lib/vermouth/data/force_fields/gromos/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/gromos 2024-01-31T16:35:00,168 copying build/lib/vermouth/data/force_fields/gromos/cofactors.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/gromos 2024-01-31T16:35:00,170 copying build/lib/vermouth/data/force_fields/gromos/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/gromos 2024-01-31T16:35:00,175 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn21 2024-01-31T16:35:00,175 copying build/lib/vermouth/data/force_fields/elnedyn21/general.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn21 2024-01-31T16:35:00,177 copying build/lib/vermouth/data/force_fields/elnedyn21/citations.bib -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn21 2024-01-31T16:35:00,179 copying build/lib/vermouth/data/force_fields/elnedyn21/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn21 2024-01-31T16:35:00,181 copying build/lib/vermouth/data/force_fields/elnedyn21/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn21 2024-01-31T16:35:00,184 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22p 2024-01-31T16:35:00,185 copying build/lib/vermouth/data/force_fields/elnedyn22p/general.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22p 2024-01-31T16:35:00,187 copying build/lib/vermouth/data/force_fields/elnedyn22p/citations.bib -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22p 2024-01-31T16:35:00,189 copying build/lib/vermouth/data/force_fields/elnedyn22p/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22p 2024-01-31T16:35:00,190 copying build/lib/vermouth/data/force_fields/elnedyn22p/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22p 2024-01-31T16:35:00,193 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30b32 2024-01-31T16:35:00,194 copying build/lib/vermouth/data/force_fields/martini30b32/small_molecules.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30b32 2024-01-31T16:35:00,196 copying build/lib/vermouth/data/force_fields/martini30b32/citations.bib -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30b32 2024-01-31T16:35:00,198 copying build/lib/vermouth/data/force_fields/martini30b32/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30b32 2024-01-31T16:35:00,200 copying build/lib/vermouth/data/force_fields/martini30b32/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30b32 2024-01-31T16:35:00,203 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/charmm 2024-01-31T16:35:00,204 copying build/lib/vermouth/data/force_fields/charmm/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/charmm 2024-01-31T16:35:00,206 copying build/lib/vermouth/data/force_fields/charmm/small_molecule_charmm.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/charmm 2024-01-31T16:35:00,252 copying build/lib/vermouth/data/force_fields/charmm/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/charmm 2024-01-31T16:35:00,255 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22 2024-01-31T16:35:00,256 copying build/lib/vermouth/data/force_fields/martini22/general.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22 2024-01-31T16:35:00,257 copying build/lib/vermouth/data/force_fields/martini22/citations.bib -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22 2024-01-31T16:35:00,259 copying build/lib/vermouth/data/force_fields/martini22/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22 2024-01-31T16:35:00,261 copying build/lib/vermouth/data/force_fields/martini22/nucleotides.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22 2024-01-31T16:35:00,263 copying build/lib/vermouth/data/force_fields/martini22/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22 2024-01-31T16:35:00,266 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini3001 2024-01-31T16:35:00,266 copying build/lib/vermouth/data/force_fields/martini3001/general.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini3001 2024-01-31T16:35:00,268 copying build/lib/vermouth/data/force_fields/martini3001/citations.bib -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini3001 2024-01-31T16:35:00,270 copying build/lib/vermouth/data/force_fields/martini3001/small_molecule_martini3.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini3001 2024-01-31T16:35:00,272 copying build/lib/vermouth/data/force_fields/martini3001/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini3001 2024-01-31T16:35:00,274 copying build/lib/vermouth/data/force_fields/martini3001/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini3001 2024-01-31T16:35:00,276 copying build/lib/vermouth/data/quotes.txt -> build/bdist.linux-armv7l/wheel/vermouth/data 2024-01-31T16:35:00,278 copying build/lib/vermouth/citation_parser.py -> build/bdist.linux-armv7l/wheel/vermouth 2024-01-31T16:35:00,282 creating build/bdist.linux-armv7l/wheel/vermouth/tests 2024-01-31T16:35:00,282 copying build/lib/vermouth/tests/test_native_forcefield.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2024-01-31T16:35:00,284 copying build/lib/vermouth/tests/molecule_strategies.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2024-01-31T16:35:00,287 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data 2024-01-31T16:35:00,288 copying build/lib/vermouth/tests/data/1bta.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2024-01-31T16:35:00,292 copying build/lib/vermouth/tests/data/6E8W.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2024-01-31T16:35:00,340 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/mappings 2024-01-31T16:35:00,342 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/mappings/universal-test 2024-01-31T16:35:00,343 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/mappings/universal-test/pepplane 2024-01-31T16:35:00,345 copying build/lib/vermouth/tests/data/mappings/universal-test/pepplane/modifications.mapping -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/mappings/universal-test/pepplane 2024-01-31T16:35:00,347 copying build/lib/vermouth/tests/data/mappings/universal-test/pepplane/ala.mapping -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/mappings/universal-test/pepplane 2024-01-31T16:35:00,349 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/mappings/universal-test/martini-test 2024-01-31T16:35:00,350 copying build/lib/vermouth/tests/data/mappings/universal-test/martini-test/ser.mapping -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/mappings/universal-test/martini-test 2024-01-31T16:35:00,352 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests 2024-01-31T16:35:00,354 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0 2024-01-31T16:35:00,355 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix 2024-01-31T16:35:00,356 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix 2024-01-31T16:35:00,358 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2024-01-31T16:35:00,359 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2024-01-31T16:35:00,361 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2024-01-31T16:35:00,362 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2024-01-31T16:35:00,365 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2024-01-31T16:35:00,367 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2024-01-31T16:35:00,370 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2024-01-31T16:35:00,372 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2024-01-31T16:35:00,374 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix 2024-01-31T16:35:00,378 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet 2024-01-31T16:35:00,379 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet 2024-01-31T16:35:00,381 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2024-01-31T16:35:00,382 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2024-01-31T16:35:00,385 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2024-01-31T16:35:00,387 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2024-01-31T16:35:00,389 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2024-01-31T16:35:00,391 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2024-01-31T16:35:00,394 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2024-01-31T16:35:00,397 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2024-01-31T16:35:00,398 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet 2024-01-31T16:35:00,402 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini 2024-01-31T16:35:00,403 copying build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini 2024-01-31T16:35:00,405 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2024-01-31T16:35:00,407 copying build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2024-01-31T16:35:00,409 copying build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2024-01-31T16:35:00,411 copying build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2024-01-31T16:35:00,413 copying build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2024-01-31T16:35:00,415 copying build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2024-01-31T16:35:00,417 copying build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini 2024-01-31T16:35:00,419 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage 2024-01-31T16:35:00,420 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage 2024-01-31T16:35:00,423 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2024-01-31T16:35:00,424 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2024-01-31T16:35:00,426 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2024-01-31T16:35:00,428 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2024-01-31T16:35:00,431 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2024-01-31T16:35:00,433 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2024-01-31T16:35:00,436 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2024-01-31T16:35:00,438 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2024-01-31T16:35:00,440 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage 2024-01-31T16:35:00,443 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1 2024-01-31T16:35:00,444 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias 2024-01-31T16:35:00,446 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias 2024-01-31T16:35:00,448 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/martinize2 2024-01-31T16:35:00,449 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/martinize2 2024-01-31T16:35:00,451 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/martinize2/virtual_sites_atomtypes.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/martinize2 2024-01-31T16:35:00,454 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/martinize2/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/martinize2 2024-01-31T16:35:00,456 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/martinize2/virtual_sites_nonbond_params.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/martinize2 2024-01-31T16:35:00,458 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/martinize2 2024-01-31T16:35:00,462 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/martinize2 2024-01-31T16:35:00,465 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/martinize2 2024-01-31T16:35:00,467 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias 2024-01-31T16:35:00,473 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/map.map -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias 2024-01-31T16:35:00,478 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm 2024-01-31T16:35:00,479 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm 2024-01-31T16:35:00,482 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2024-01-31T16:35:00,483 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2024-01-31T16:35:00,486 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2024-01-31T16:35:00,488 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/cg.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2024-01-31T16:35:00,490 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2024-01-31T16:35:00,493 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2024-01-31T16:35:00,499 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2024-01-31T16:35:00,501 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/chain_.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2024-01-31T16:35:00,504 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm 2024-01-31T16:35:00,516 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm 2024-01-31T16:35:00,517 copying build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm 2024-01-31T16:35:00,520 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2024-01-31T16:35:00,521 copying build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2024-01-31T16:35:00,523 copying build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2024-01-31T16:35:00,525 copying build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/cg.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2024-01-31T16:35:00,527 copying build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/sys.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2024-01-31T16:35:00,530 copying build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2024-01-31T16:35:00,533 copying build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2024-01-31T16:35:00,537 copying build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2024-01-31T16:35:00,539 copying build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/chain_.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2024-01-31T16:35:00,542 copying build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/input.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm 2024-01-31T16:35:00,548 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_GO 2024-01-31T16:35:00,549 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_GO 2024-01-31T16:35:00,552 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/martinize2 2024-01-31T16:35:00,553 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/martinize2 2024-01-31T16:35:00,555 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/martinize2/go_atomtypes.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/martinize2 2024-01-31T16:35:00,558 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/martinize2/go_nbparams.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/martinize2 2024-01-31T16:35:00,560 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/martinize2/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/martinize2 2024-01-31T16:35:00,562 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/martinize2 2024-01-31T16:35:00,566 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/martinize2 2024-01-31T16:35:00,569 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/martinize2 2024-01-31T16:35:00,571 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_GO 2024-01-31T16:35:00,576 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/map.map -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_GO 2024-01-31T16:35:00,582 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin 2024-01-31T16:35:00,583 copying build/lib/vermouth/tests/data/integration_tests/tier-1/villin/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin 2024-01-31T16:35:00,585 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2024-01-31T16:35:00,587 copying build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2024-01-31T16:35:00,589 copying build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2024-01-31T16:35:00,591 copying build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2024-01-31T16:35:00,593 copying build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2024-01-31T16:35:00,596 copying build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2024-01-31T16:35:00,598 copying build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2024-01-31T16:35:00,600 copying build/lib/vermouth/tests/data/integration_tests/tier-1/villin/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin 2024-01-31T16:35:00,604 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap 2024-01-31T16:35:00,605 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap 2024-01-31T16:35:00,607 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/6LFO_gap.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap 2024-01-31T16:35:00,613 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2024-01-31T16:35:00,614 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2024-01-31T16:35:00,616 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2024-01-31T16:35:00,618 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/cg.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2024-01-31T16:35:00,620 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/chain_R.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2024-01-31T16:35:00,622 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2024-01-31T16:35:00,625 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2024-01-31T16:35:00,629 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2024-01-31T16:35:00,631 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2024-01-31T16:35:00,632 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2024-01-31T16:35:00,635 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2024-01-31T16:35:00,635 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2024-01-31T16:35:00,637 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2024-01-31T16:35:00,639 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2024-01-31T16:35:00,642 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2024-01-31T16:35:00,644 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2024-01-31T16:35:00,646 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2024-01-31T16:35:00,650 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/test.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2024-01-31T16:35:00,653 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2024-01-31T16:35:00,654 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2024-01-31T16:35:00,658 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2024-01-31T16:35:00,661 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2024-01-31T16:35:00,663 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2024-01-31T16:35:00,665 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2024-01-31T16:35:00,669 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti 2024-01-31T16:35:00,670 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti 2024-01-31T16:35:00,672 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2024-01-31T16:35:00,673 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2024-01-31T16:35:00,675 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2024-01-31T16:35:00,677 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2024-01-31T16:35:00,680 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2024-01-31T16:35:00,681 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2024-01-31T16:35:00,684 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2024-01-31T16:35:00,686 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2024-01-31T16:35:00,688 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti 2024-01-31T16:35:00,692 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5 2024-01-31T16:35:00,693 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5 2024-01-31T16:35:00,695 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2024-01-31T16:35:00,696 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2024-01-31T16:35:00,698 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2024-01-31T16:35:00,700 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/cg.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2024-01-31T16:35:00,701 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2024-01-31T16:35:00,705 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2024-01-31T16:35:00,709 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2024-01-31T16:35:00,711 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/chain_.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2024-01-31T16:35:00,714 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5 2024-01-31T16:35:00,725 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain 2024-01-31T16:35:00,726 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain 2024-01-31T16:35:00,728 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2024-01-31T16:35:00,729 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2024-01-31T16:35:00,731 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2024-01-31T16:35:00,733 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/cg.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2024-01-31T16:35:00,734 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2024-01-31T16:35:00,737 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2024-01-31T16:35:00,739 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2024-01-31T16:35:00,741 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2024-01-31T16:35:00,743 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain 2024-01-31T16:35:00,747 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias 2024-01-31T16:35:00,748 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias 2024-01-31T16:35:00,750 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/martinize2 2024-01-31T16:35:00,751 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/martinize2 2024-01-31T16:35:00,752 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/martinize2/go_atomtypes.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/martinize2 2024-01-31T16:35:00,755 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/martinize2/go_nbparams.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/martinize2 2024-01-31T16:35:00,757 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/martinize2/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/martinize2 2024-01-31T16:35:00,759 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/martinize2 2024-01-31T16:35:00,761 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/martinize2 2024-01-31T16:35:00,764 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/martinize2 2024-01-31T16:35:00,766 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias 2024-01-31T16:35:00,771 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/map.map -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias 2024-01-31T16:35:00,776 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40 2024-01-31T16:35:00,777 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40 2024-01-31T16:35:00,779 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/3i40.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40 2024-01-31T16:35:00,783 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2024-01-31T16:35:00,783 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2024-01-31T16:35:00,785 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2024-01-31T16:35:00,787 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/cg.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2024-01-31T16:35:00,789 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2024-01-31T16:35:00,791 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2024-01-31T16:35:00,794 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/chain_C.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2024-01-31T16:35:00,796 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2024-01-31T16:35:00,798 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2024-01-31T16:35:00,800 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/insulin_dimer.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2024-01-31T16:35:00,803 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region 2024-01-31T16:35:00,804 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region 2024-01-31T16:35:00,806 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2024-01-31T16:35:00,807 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2024-01-31T16:35:00,810 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2024-01-31T16:35:00,812 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/cg.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2024-01-31T16:35:00,814 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2024-01-31T16:35:00,817 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2024-01-31T16:35:00,820 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2024-01-31T16:35:00,823 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2024-01-31T16:35:00,825 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region 2024-01-31T16:35:00,831 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme 2024-01-31T16:35:00,832 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme 2024-01-31T16:35:00,835 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2024-01-31T16:35:00,836 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2024-01-31T16:35:00,839 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2024-01-31T16:35:00,843 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2024-01-31T16:35:00,846 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2024-01-31T16:35:00,848 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2024-01-31T16:35:00,851 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2024-01-31T16:35:00,856 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/test.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2024-01-31T16:35:00,859 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2024-01-31T16:35:00,861 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme 2024-01-31T16:35:00,867 copying build/lib/vermouth/tests/data/ala5.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2024-01-31T16:35:00,871 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields 2024-01-31T16:35:00,872 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/pepplane 2024-01-31T16:35:00,874 copying build/lib/vermouth/tests/data/force_fields/pepplane/general.ff -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/pepplane 2024-01-31T16:35:00,876 copying build/lib/vermouth/tests/data/force_fields/pepplane/ala.ff -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/pepplane 2024-01-31T16:35:00,878 copying build/lib/vermouth/tests/data/force_fields/pepplane/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/pepplane 2024-01-31T16:35:00,881 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/martini-test 2024-01-31T16:35:00,882 copying build/lib/vermouth/tests/data/force_fields/martini-test/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/martini-test 2024-01-31T16:35:00,886 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/universal-test 2024-01-31T16:35:00,887 copying build/lib/vermouth/tests/data/force_fields/universal-test/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/universal-test 2024-01-31T16:35:00,889 copying build/lib/vermouth/tests/data/force_fields/universal-test/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/universal-test 2024-01-31T16:35:00,893 copying build/lib/vermouth/tests/data/1bta_mutated.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2024-01-31T16:35:00,898 copying build/lib/vermouth/tests/data/tri_alanine.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2024-01-31T16:35:00,901 copying build/lib/vermouth/tests/data/dna-short.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2024-01-31T16:35:00,903 copying build/lib/vermouth/tests/data/heme.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2024-01-31T16:35:00,906 copying build/lib/vermouth/tests/data/2dn2.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2024-01-31T16:35:00,920 copying build/lib/vermouth/tests/data/2QWO.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2024-01-31T16:35:00,927 copying build/lib/vermouth/tests/data/ala5_cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2024-01-31T16:35:00,930 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/dssp_tests 2024-01-31T16:35:00,931 copying build/lib/vermouth/tests/data/dssp_tests/mini-protein1_betasheet.pdb.v3.0.0-3b1-deb_cv1.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/dssp_tests 2024-01-31T16:35:00,933 copying build/lib/vermouth/tests/data/dssp_tests/mini-protein3_trp-cage.pdb.v2.2.1-3b2-deb_cv1.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/dssp_tests 2024-01-31T16:35:00,935 copying build/lib/vermouth/tests/data/dssp_tests/dssp_1bta.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/dssp_tests 2024-01-31T16:35:00,937 copying build/lib/vermouth/tests/data/dssp_tests/mini-protein2_helix.pdb.v3.0.0-3b1-deb_cv1.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/dssp_tests 2024-01-31T16:35:00,940 copying build/lib/vermouth/tests/data/dssp_tests/mini-protein2_helix.pdb.v2.2.1-3b2-deb_cv1.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/dssp_tests 2024-01-31T16:35:00,942 copying build/lib/vermouth/tests/data/dssp_tests/mini-protein1_betasheet.pdb.v2.2.1-3b2-deb_cv1.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/dssp_tests 2024-01-31T16:35:00,944 copying build/lib/vermouth/tests/data/dssp_tests/mini-protein3_trp-cage.pdb.v3.0.0-3b1-deb_cv1.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/dssp_tests 2024-01-31T16:35:00,946 copying build/lib/vermouth/tests/test_average_beads.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2024-01-31T16:35:00,948 copying build/lib/vermouth/tests/test_map_parser.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2024-01-31T16:35:00,951 copying build/lib/vermouth/tests/test_mapping_integrative.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2024-01-31T16:35:00,953 copying build/lib/vermouth/tests/test_grappa.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2024-01-31T16:35:00,955 copying build/lib/vermouth/tests/test_dssp.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2024-01-31T16:35:00,958 copying build/lib/vermouth/tests/test_logging.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2024-01-31T16:35:00,960 creating build/bdist.linux-armv7l/wheel/vermouth/tests/integration_tests 2024-01-31T16:35:00,961 copying build/lib/vermouth/tests/integration_tests/test_integration.py -> build/bdist.linux-armv7l/wheel/vermouth/tests/integration_tests 2024-01-31T16:35:00,964 copying build/lib/vermouth/tests/integration_tests/__init__.py -> build/bdist.linux-armv7l/wheel/vermouth/tests/integration_tests 2024-01-31T16:35:00,965 copying build/lib/vermouth/tests/test_vs_generation.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2024-01-31T16:35:00,967 copying build/lib/vermouth/tests/test_water_bias.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2024-01-31T16:35:00,969 creating build/bdist.linux-armv7l/wheel/vermouth/tests/gmx 2024-01-31T16:35:00,970 copying build/lib/vermouth/tests/gmx/test_itp.py -> build/bdist.linux-armv7l/wheel/vermouth/tests/gmx 2024-01-31T16:35:00,973 copying build/lib/vermouth/tests/gmx/test_topology.py -> build/bdist.linux-armv7l/wheel/vermouth/tests/gmx 2024-01-31T16:35:00,975 copying build/lib/vermouth/tests/gmx/test_gro.py -> build/bdist.linux-armv7l/wheel/vermouth/tests/gmx 2024-01-31T16:35:00,977 copying build/lib/vermouth/tests/test_apply_rubber_band.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2024-01-31T16:35:00,980 copying build/lib/vermouth/tests/test_version.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2024-01-31T16:35:00,981 copying build/lib/vermouth/tests/test_links.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2024-01-31T16:35:00,984 copying build/lib/vermouth/tests/test_sort_molecule_atoms.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2024-01-31T16:35:00,986 copying build/lib/vermouth/tests/datafiles.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2024-01-31T16:35:00,988 copying build/lib/vermouth/tests/test_annotate_mut_mod.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2024-01-31T16:35:00,990 copying build/lib/vermouth/tests/test_itp_files.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2024-01-31T16:35:00,992 copying build/lib/vermouth/tests/test_tune_cystein_bridges.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2024-01-31T16:35:00,995 creating build/bdist.linux-armv7l/wheel/vermouth/tests/pdb 2024-01-31T16:35:00,996 copying build/lib/vermouth/tests/pdb/test_read_pdb.py -> build/bdist.linux-armv7l/wheel/vermouth/tests/pdb 2024-01-31T16:35:00,998 copying build/lib/vermouth/tests/pdb/test_write_pdb.py -> build/bdist.linux-armv7l/wheel/vermouth/tests/pdb 2024-01-31T16:35:01,000 copying build/lib/vermouth/tests/test_ptm_detection.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2024-01-31T16:35:01,002 copying build/lib/vermouth/tests/test_graph_utils.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2024-01-31T16:35:01,005 copying build/lib/vermouth/tests/test_map_input.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2024-01-31T16:35:01,007 copying build/lib/vermouth/tests/test_make_bonds.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2024-01-31T16:35:01,009 copying build/lib/vermouth/tests/test_ffinput.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2024-01-31T16:35:01,012 copying build/lib/vermouth/tests/test_utils.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2024-01-31T16:35:01,014 copying build/lib/vermouth/tests/test_ff_files.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2024-01-31T16:35:01,017 copying build/lib/vermouth/tests/helper_functions.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2024-01-31T16:35:01,019 copying build/lib/vermouth/tests/test_section_parser.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2024-01-31T16:35:01,021 copying build/lib/vermouth/tests/test_file_writer.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2024-01-31T16:35:01,023 copying build/lib/vermouth/tests/test_repair_graph.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2024-01-31T16:35:01,025 copying build/lib/vermouth/tests/test_do_mapping.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2024-01-31T16:35:01,028 copying build/lib/vermouth/tests/test_add_molecule_edges.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2024-01-31T16:35:01,030 copying build/lib/vermouth/tests/test_selectors.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2024-01-31T16:35:01,032 copying build/lib/vermouth/tests/test_set_molecule_meta.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2024-01-31T16:35:01,034 copying build/lib/vermouth/tests/test_ismags.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2024-01-31T16:35:01,037 creating build/bdist.linux-armv7l/wheel/vermouth/tests/rcsu 2024-01-31T16:35:01,037 copying build/lib/vermouth/tests/rcsu/test_read_go_map.py -> build/bdist.linux-armv7l/wheel/vermouth/tests/rcsu 2024-01-31T16:35:01,039 copying build/lib/vermouth/tests/rcsu/test_go_structure_bias.py -> build/bdist.linux-armv7l/wheel/vermouth/tests/rcsu 2024-01-31T16:35:01,042 copying build/lib/vermouth/tests/rcsu/test_go_utils.py -> build/bdist.linux-armv7l/wheel/vermouth/tests/rcsu 2024-01-31T16:35:01,044 copying build/lib/vermouth/tests/__init__.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2024-01-31T16:35:01,045 copying build/lib/vermouth/tests/test_name_moltype.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2024-01-31T16:35:01,048 copying build/lib/vermouth/tests/test_edge_tuning.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2024-01-31T16:35:01,050 copying build/lib/vermouth/tests/test_forcefield.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2024-01-31T16:35:01,052 copying build/lib/vermouth/tests/test_molecule.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2024-01-31T16:35:01,056 copying build/lib/vermouth/tests/test_geometry.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2024-01-31T16:35:01,058 copying build/lib/vermouth/system.py -> build/bdist.linux-armv7l/wheel/vermouth 2024-01-31T16:35:01,061 copying build/lib/vermouth/forcefield.py -> build/bdist.linux-armv7l/wheel/vermouth 2024-01-31T16:35:01,063 creating build/bdist.linux-armv7l/wheel/vermouth/gmx 2024-01-31T16:35:01,064 copying build/lib/vermouth/gmx/rtp.py -> build/bdist.linux-armv7l/wheel/vermouth/gmx 2024-01-31T16:35:01,067 copying build/lib/vermouth/gmx/itp.py -> build/bdist.linux-armv7l/wheel/vermouth/gmx 2024-01-31T16:35:01,069 copying build/lib/vermouth/gmx/gro.py -> build/bdist.linux-armv7l/wheel/vermouth/gmx 2024-01-31T16:35:01,071 copying build/lib/vermouth/gmx/topology.py -> build/bdist.linux-armv7l/wheel/vermouth/gmx 2024-01-31T16:35:01,073 copying build/lib/vermouth/gmx/itp_read.py -> build/bdist.linux-armv7l/wheel/vermouth/gmx 2024-01-31T16:35:01,076 copying build/lib/vermouth/gmx/__init__.py -> build/bdist.linux-armv7l/wheel/vermouth/gmx 2024-01-31T16:35:01,077 copying build/lib/vermouth/ffinput.py -> build/bdist.linux-armv7l/wheel/vermouth 2024-01-31T16:35:01,080 creating build/bdist.linux-armv7l/wheel/vermouth/pdb 2024-01-31T16:35:01,081 copying build/lib/vermouth/pdb/pdb.py -> build/bdist.linux-armv7l/wheel/vermouth/pdb 2024-01-31T16:35:01,084 copying build/lib/vermouth/pdb/__init__.py -> build/bdist.linux-armv7l/wheel/vermouth/pdb 2024-01-31T16:35:01,086 copying build/lib/vermouth/file_writer.py -> build/bdist.linux-armv7l/wheel/vermouth 2024-01-31T16:35:01,088 copying build/lib/vermouth/ismags.py -> build/bdist.linux-armv7l/wheel/vermouth 2024-01-31T16:35:01,091 copying build/lib/vermouth/map_parser.py -> build/bdist.linux-armv7l/wheel/vermouth 2024-01-31T16:35:01,093 copying build/lib/vermouth/graph_utils.py -> build/bdist.linux-armv7l/wheel/vermouth 2024-01-31T16:35:01,095 copying build/lib/vermouth/truncating_formatter.py -> build/bdist.linux-armv7l/wheel/vermouth 2024-01-31T16:35:01,098 creating build/bdist.linux-armv7l/wheel/vermouth/graphing 2024-01-31T16:35:01,099 copying build/lib/vermouth/graphing/grappa.py -> build/bdist.linux-armv7l/wheel/vermouth/graphing 2024-01-31T16:35:01,102 copying build/lib/vermouth/geometry.py -> build/bdist.linux-armv7l/wheel/vermouth 2024-01-31T16:35:01,104 copying build/lib/vermouth/utils.py -> build/bdist.linux-armv7l/wheel/vermouth 2024-01-31T16:35:01,106 copying build/lib/vermouth/parser_utils.py -> build/bdist.linux-armv7l/wheel/vermouth 2024-01-31T16:35:01,109 creating build/bdist.linux-armv7l/wheel/vermouth/rcsu 2024-01-31T16:35:01,109 copying build/lib/vermouth/rcsu/go_utils.py -> build/bdist.linux-armv7l/wheel/vermouth/rcsu 2024-01-31T16:35:01,111 copying build/lib/vermouth/rcsu/go_vs_includes.py -> build/bdist.linux-armv7l/wheel/vermouth/rcsu 2024-01-31T16:35:01,114 copying build/lib/vermouth/rcsu/go_structure_bias.py -> build/bdist.linux-armv7l/wheel/vermouth/rcsu 2024-01-31T16:35:01,117 copying build/lib/vermouth/rcsu/contact_map.py -> build/bdist.linux-armv7l/wheel/vermouth/rcsu 2024-01-31T16:35:01,118 copying build/lib/vermouth/rcsu/go_pipeline.py -> build/bdist.linux-armv7l/wheel/vermouth/rcsu 2024-01-31T16:35:01,120 copying build/lib/vermouth/rcsu/__init__.py -> build/bdist.linux-armv7l/wheel/vermouth/rcsu 2024-01-31T16:35:01,122 copying build/lib/vermouth/__init__.py -> build/bdist.linux-armv7l/wheel/vermouth 2024-01-31T16:35:01,124 copying build/lib/vermouth/log_helpers.py -> build/bdist.linux-armv7l/wheel/vermouth 2024-01-31T16:35:01,126 copying build/lib/vermouth/selectors.py -> build/bdist.linux-armv7l/wheel/vermouth 2024-01-31T16:35:01,129 creating build/bdist.linux-armv7l/wheel/vermouth/dssp 2024-01-31T16:35:01,130 copying build/lib/vermouth/dssp/dssp.py -> build/bdist.linux-armv7l/wheel/vermouth/dssp 2024-01-31T16:35:01,133 copying build/lib/vermouth/dssp/__init__.py -> build/bdist.linux-armv7l/wheel/vermouth/dssp 2024-01-31T16:35:01,135 running install_egg_info 2024-01-31T16:35:01,141 Copying vermouth.egg-info to build/bdist.linux-armv7l/wheel/vermouth-0.10.0-py3.11.egg-info 2024-01-31T16:35:01,160 running install_scripts 2024-01-31T16:35:01,161 creating build/bdist.linux-armv7l/wheel/vermouth-0.10.0.data 2024-01-31T16:35:01,162 creating build/bdist.linux-armv7l/wheel/vermouth-0.10.0.data/scripts 2024-01-31T16:35:01,163 copying build/scripts-3.11/martinize2 -> build/bdist.linux-armv7l/wheel/vermouth-0.10.0.data/scripts 2024-01-31T16:35:01,166 changing mode of build/bdist.linux-armv7l/wheel/vermouth-0.10.0.data/scripts/martinize2 to 755 2024-01-31T16:35:01,183 creating build/bdist.linux-armv7l/wheel/vermouth-0.10.0.dist-info/WHEEL 2024-01-31T16:35:01,185 creating '/tmp/pip-wheel-7tdsmxkn/.tmp-0_ovyey9/vermouth-0.10.0-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-01-31T16:35:01,188 adding 'vermouth/__init__.py' 2024-01-31T16:35:01,190 adding 'vermouth/citation_parser.py' 2024-01-31T16:35:01,193 adding 'vermouth/edge_tuning.py' 2024-01-31T16:35:01,198 adding 'vermouth/ffinput.py' 2024-01-31T16:35:01,200 adding 'vermouth/file_writer.py' 2024-01-31T16:35:01,202 adding 'vermouth/forcefield.py' 2024-01-31T16:35:01,203 adding 'vermouth/geometry.py' 2024-01-31T16:35:01,206 adding 'vermouth/graph_utils.py' 2024-01-31T16:35:01,211 adding 'vermouth/ismags.py' 2024-01-31T16:35:01,214 adding 'vermouth/log_helpers.py' 2024-01-31T16:35:01,217 adding 'vermouth/map_input.py' 2024-01-31T16:35:01,221 adding 'vermouth/map_parser.py' 2024-01-31T16:35:01,228 adding 'vermouth/molecule.py' 2024-01-31T16:35:01,231 adding 'vermouth/parser_utils.py' 2024-01-31T16:35:01,233 adding 'vermouth/selectors.py' 2024-01-31T16:35:01,234 adding 'vermouth/system.py' 2024-01-31T16:35:01,236 adding 'vermouth/truncating_formatter.py' 2024-01-31T16:35:01,237 adding 'vermouth/utils.py' 2024-01-31T16:35:01,239 adding 'vermouth/data/quotes.txt' 2024-01-31T16:35:01,243 adding 'vermouth/data/force_fields/amber/aminoacids.rtp' 2024-01-31T16:35:01,245 adding 'vermouth/data/force_fields/amber/modifications.ff' 2024-01-31T16:35:01,248 adding 'vermouth/data/force_fields/charmm/aminoacids.rtp' 2024-01-31T16:35:01,249 adding 'vermouth/data/force_fields/charmm/modifications.ff' 2024-01-31T16:35:01,452 adding 'vermouth/data/force_fields/charmm/small_molecule_charmm.ff' 2024-01-31T16:35:01,466 adding 'vermouth/data/force_fields/elnedyn21/aminoacids.ff' 2024-01-31T16:35:01,467 adding 'vermouth/data/force_fields/elnedyn21/citations.bib' 2024-01-31T16:35:01,469 adding 'vermouth/data/force_fields/elnedyn21/general.ff' 2024-01-31T16:35:01,470 adding 'vermouth/data/force_fields/elnedyn21/modifications.ff' 2024-01-31T16:35:01,472 adding 'vermouth/data/force_fields/elnedyn22/aminoacids.ff' 2024-01-31T16:35:01,474 adding 'vermouth/data/force_fields/elnedyn22/citations.bib' 2024-01-31T16:35:01,475 adding 'vermouth/data/force_fields/elnedyn22/general.ff' 2024-01-31T16:35:01,476 adding 'vermouth/data/force_fields/elnedyn22/modifications.ff' 2024-01-31T16:35:01,478 adding 'vermouth/data/force_fields/elnedyn22p/aminoacids.ff' 2024-01-31T16:35:01,480 adding 'vermouth/data/force_fields/elnedyn22p/citations.bib' 2024-01-31T16:35:01,481 adding 'vermouth/data/force_fields/elnedyn22p/general.ff' 2024-01-31T16:35:01,483 adding 'vermouth/data/force_fields/elnedyn22p/modifications.ff' 2024-01-31T16:35:01,487 adding 'vermouth/data/force_fields/gromos/aminoacids.rtp' 2024-01-31T16:35:01,490 adding 'vermouth/data/force_fields/gromos/cofactors.ff' 2024-01-31T16:35:01,491 adding 'vermouth/data/force_fields/gromos/modifications.ff' 2024-01-31T16:35:01,494 adding 'vermouth/data/force_fields/martini22/aminoacids.ff' 2024-01-31T16:35:01,495 adding 'vermouth/data/force_fields/martini22/citations.bib' 2024-01-31T16:35:01,497 adding 'vermouth/data/force_fields/martini22/general.ff' 2024-01-31T16:35:01,498 adding 'vermouth/data/force_fields/martini22/modifications.ff' 2024-01-31T16:35:01,500 adding 'vermouth/data/force_fields/martini22/nucleotides.ff' 2024-01-31T16:35:01,503 adding 'vermouth/data/force_fields/martini22p/aminoacids.ff' 2024-01-31T16:35:01,504 adding 'vermouth/data/force_fields/martini22p/citations.bib' 2024-01-31T16:35:01,506 adding 'vermouth/data/force_fields/martini22p/general.ff' 2024-01-31T16:35:01,507 adding 'vermouth/data/force_fields/martini22p/modifications.ff' 2024-01-31T16:35:01,510 adding 'vermouth/data/force_fields/martini3001/aminoacids.ff' 2024-01-31T16:35:01,512 adding 'vermouth/data/force_fields/martini3001/citations.bib' 2024-01-31T16:35:01,513 adding 'vermouth/data/force_fields/martini3001/general.ff' 2024-01-31T16:35:01,514 adding 'vermouth/data/force_fields/martini3001/modifications.ff' 2024-01-31T16:35:01,516 adding 'vermouth/data/force_fields/martini3001/small_molecule_martini3.ff' 2024-01-31T16:35:01,518 adding 'vermouth/data/force_fields/martini30b32/aminoacids.ff' 2024-01-31T16:35:01,520 adding 'vermouth/data/force_fields/martini30b32/citations.bib' 2024-01-31T16:35:01,521 adding 'vermouth/data/force_fields/martini30b32/modifications.ff' 2024-01-31T16:35:01,522 adding 'vermouth/data/force_fields/martini30b32/small_molecules.ff' 2024-01-31T16:35:01,524 adding 'vermouth/data/force_fields/martini30dev/aminoacids.ff' 2024-01-31T16:35:01,526 adding 'vermouth/data/force_fields/martini30dev/citations.bib' 2024-01-31T16:35:01,527 adding 'vermouth/data/force_fields/martini30dev/modifications.ff' 2024-01-31T16:35:01,530 adding 'vermouth/data/mappings/ala.charmm36.map' 2024-01-31T16:35:01,531 adding 'vermouth/data/mappings/ala.gromos.map' 2024-01-31T16:35:01,532 adding 'vermouth/data/mappings/arg.charmm36.map' 2024-01-31T16:35:01,533 adding 'vermouth/data/mappings/arg.charmm36.martini22p.map' 2024-01-31T16:35:01,534 adding 'vermouth/data/mappings/arg.gromos.map' 2024-01-31T16:35:01,535 adding 'vermouth/data/mappings/asn.charmm36.map' 2024-01-31T16:35:01,537 adding 'vermouth/data/mappings/asn.charmm36.martini22p.map' 2024-01-31T16:35:01,538 adding 'vermouth/data/mappings/asn.gromos.map' 2024-01-31T16:35:01,539 adding 'vermouth/data/mappings/asp.charmm36.map' 2024-01-31T16:35:01,540 adding 'vermouth/data/mappings/asp.charmm36.martini22p.map' 2024-01-31T16:35:01,542 adding 'vermouth/data/mappings/asp.gromos.map' 2024-01-31T16:35:01,543 adding 'vermouth/data/mappings/asp0.gromos.map' 2024-01-31T16:35:01,544 adding 'vermouth/data/mappings/chol.charmm36.map' 2024-01-31T16:35:01,545 adding 'vermouth/data/mappings/cys.charmm36.map' 2024-01-31T16:35:01,546 adding 'vermouth/data/mappings/cys.gromos.map' 2024-01-31T16:35:01,548 adding 'vermouth/data/mappings/dmpc.charmm36.map' 2024-01-31T16:35:01,550 adding 'vermouth/data/mappings/dopc.charmm36.map' 2024-01-31T16:35:01,551 adding 'vermouth/data/mappings/dppc.charmm36.map' 2024-01-31T16:35:01,553 adding 'vermouth/data/mappings/dppg.charmm36.map' 2024-01-31T16:35:01,554 adding 'vermouth/data/mappings/fmn.gromos.map' 2024-01-31T16:35:01,555 adding 'vermouth/data/mappings/gln.charmm36.map' 2024-01-31T16:35:01,557 adding 'vermouth/data/mappings/gln.charmm36.martini22p.map' 2024-01-31T16:35:01,558 adding 'vermouth/data/mappings/gln.gromos.map' 2024-01-31T16:35:01,559 adding 'vermouth/data/mappings/glu.charmm36.map' 2024-01-31T16:35:01,561 adding 'vermouth/data/mappings/glu.charmm36.martini22p.map' 2024-01-31T16:35:01,562 adding 'vermouth/data/mappings/glu.gromos.map' 2024-01-31T16:35:01,563 adding 'vermouth/data/mappings/glu0.gromos.map' 2024-01-31T16:35:01,564 adding 'vermouth/data/mappings/gly.charmm36.map' 2024-01-31T16:35:01,565 adding 'vermouth/data/mappings/gly.gromos.map' 2024-01-31T16:35:01,567 adding 'vermouth/data/mappings/his.charmm36.map' 2024-01-31T16:35:01,568 adding 'vermouth/data/mappings/his.gromos.map' 2024-01-31T16:35:01,569 adding 'vermouth/data/mappings/hsd.charmm36.map' 2024-01-31T16:35:01,570 adding 'vermouth/data/mappings/hse.charmm36.map' 2024-01-31T16:35:01,572 adding 'vermouth/data/mappings/hsp.charmm36.map' 2024-01-31T16:35:01,573 adding 'vermouth/data/mappings/ile.charmm36.map' 2024-01-31T16:35:01,574 adding 'vermouth/data/mappings/ile.gromos.map' 2024-01-31T16:35:01,575 adding 'vermouth/data/mappings/leu.charmm36.map' 2024-01-31T16:35:01,577 adding 'vermouth/data/mappings/leu.gromos.map' 2024-01-31T16:35:01,578 adding 'vermouth/data/mappings/lys.charmm36.map' 2024-01-31T16:35:01,579 adding 'vermouth/data/mappings/lys.charmm36.martini22p.map' 2024-01-31T16:35:01,581 adding 'vermouth/data/mappings/lys.gromos.map' 2024-01-31T16:35:01,582 adding 'vermouth/data/mappings/met.charmm36.map' 2024-01-31T16:35:01,583 adding 'vermouth/data/mappings/met.gromos.map' 2024-01-31T16:35:01,584 adding 'vermouth/data/mappings/modifications.gromos.mapping' 2024-01-31T16:35:01,585 adding 'vermouth/data/mappings/modifications.mapping' 2024-01-31T16:35:01,586 adding 'vermouth/data/mappings/nad.gromos.map' 2024-01-31T16:35:01,588 adding 'vermouth/data/mappings/phe.charmm36.map' 2024-01-31T16:35:01,589 adding 'vermouth/data/mappings/phe.gromos.map' 2024-01-31T16:35:01,590 adding 'vermouth/data/mappings/popc.charmm36.map' 2024-01-31T16:35:01,592 adding 'vermouth/data/mappings/pope.charmm36.map' 2024-01-31T16:35:01,593 adding 'vermouth/data/mappings/popg.charmm36.map' 2024-01-31T16:35:01,595 adding 'vermouth/data/mappings/pops.charmm36.map' 2024-01-31T16:35:01,596 adding 'vermouth/data/mappings/pro.charmm36.map' 2024-01-31T16:35:01,597 adding 'vermouth/data/mappings/pro.gromos.map' 2024-01-31T16:35:01,598 adding 'vermouth/data/mappings/ser.charmm36.map' 2024-01-31T16:35:01,600 adding 'vermouth/data/mappings/ser.charmm36.martini22p.map' 2024-01-31T16:35:01,601 adding 'vermouth/data/mappings/ser.gromos.map' 2024-01-31T16:35:01,602 adding 'vermouth/data/mappings/thr.charmm36.map' 2024-01-31T16:35:01,603 adding 'vermouth/data/mappings/thr.charmm36.martini22p.map' 2024-01-31T16:35:01,604 adding 'vermouth/data/mappings/thr.gromos.map' 2024-01-31T16:35:01,606 adding 'vermouth/data/mappings/tpp.gromos.map' 2024-01-31T16:35:01,607 adding 'vermouth/data/mappings/trp.charmm36.map' 2024-01-31T16:35:01,608 adding 'vermouth/data/mappings/trp.gromos.map' 2024-01-31T16:35:01,609 adding 'vermouth/data/mappings/tyr.charmm36.map' 2024-01-31T16:35:01,610 adding 'vermouth/data/mappings/tyr.gromos.map' 2024-01-31T16:35:01,611 adding 'vermouth/data/mappings/val.charmm36.map' 2024-01-31T16:35:01,613 adding 'vermouth/data/mappings/val.gromos.map' 2024-01-31T16:35:01,615 adding 'vermouth/data/mappings/elnedyn/ala.charmm36.map' 2024-01-31T16:35:01,616 adding 'vermouth/data/mappings/elnedyn/arg.charmm36.map' 2024-01-31T16:35:01,617 adding 'vermouth/data/mappings/elnedyn/asn.charmm36.map' 2024-01-31T16:35:01,619 adding 'vermouth/data/mappings/elnedyn/asp.charmm36.map' 2024-01-31T16:35:01,620 adding 'vermouth/data/mappings/elnedyn/chol.charmm36.map' 2024-01-31T16:35:01,621 adding 'vermouth/data/mappings/elnedyn/cys.charmm36.map' 2024-01-31T16:35:01,623 adding 'vermouth/data/mappings/elnedyn/dmpc.charmm36.map' 2024-01-31T16:35:01,625 adding 'vermouth/data/mappings/elnedyn/dopc.charmm36.map' 2024-01-31T16:35:01,626 adding 'vermouth/data/mappings/elnedyn/dppc.charmm36.map' 2024-01-31T16:35:01,628 adding 'vermouth/data/mappings/elnedyn/dppg.charmm36.map' 2024-01-31T16:35:01,629 adding 'vermouth/data/mappings/elnedyn/gln.charmm36.map' 2024-01-31T16:35:01,631 adding 'vermouth/data/mappings/elnedyn/glu.charmm36.map' 2024-01-31T16:35:01,632 adding 'vermouth/data/mappings/elnedyn/gly.charmm36.map' 2024-01-31T16:35:01,634 adding 'vermouth/data/mappings/elnedyn/his.charmm36.map' 2024-01-31T16:35:01,635 adding 'vermouth/data/mappings/elnedyn/ile.charmm36.map' 2024-01-31T16:35:01,636 adding 'vermouth/data/mappings/elnedyn/leu.charmm36.map' 2024-01-31T16:35:01,637 adding 'vermouth/data/mappings/elnedyn/lys.charmm36.map' 2024-01-31T16:35:01,639 adding 'vermouth/data/mappings/elnedyn/met.charmm36.map' 2024-01-31T16:35:01,640 adding 'vermouth/data/mappings/elnedyn/modifications.elnedyn21.mapping' 2024-01-31T16:35:01,641 adding 'vermouth/data/mappings/elnedyn/modifications.elnedyn22.mapping' 2024-01-31T16:35:01,643 adding 'vermouth/data/mappings/elnedyn/modifications.elnedyn22p.mapping' 2024-01-31T16:35:01,644 adding 'vermouth/data/mappings/elnedyn/phe.charmm36.map' 2024-01-31T16:35:01,646 adding 'vermouth/data/mappings/elnedyn/popc.charmm36.map' 2024-01-31T16:35:01,648 adding 'vermouth/data/mappings/elnedyn/pope.charmm36.map' 2024-01-31T16:35:01,649 adding 'vermouth/data/mappings/elnedyn/popg.charmm36.map' 2024-01-31T16:35:01,651 adding 'vermouth/data/mappings/elnedyn/pops.charmm36.map' 2024-01-31T16:35:01,652 adding 'vermouth/data/mappings/elnedyn/pro.charmm36.map' 2024-01-31T16:35:01,653 adding 'vermouth/data/mappings/elnedyn/ser.charmm36.map' 2024-01-31T16:35:01,655 adding 'vermouth/data/mappings/elnedyn/thr.charmm36.map' 2024-01-31T16:35:01,656 adding 'vermouth/data/mappings/elnedyn/trp.charmm36.map' 2024-01-31T16:35:01,657 adding 'vermouth/data/mappings/elnedyn/tyr.charmm36.map' 2024-01-31T16:35:01,659 adding 'vermouth/data/mappings/elnedyn/val.charmm36.map' 2024-01-31T16:35:01,660 adding 'vermouth/data/mappings/elnedyn/elnedyn22p/arg.charmm36.elnedyn22p.map' 2024-01-31T16:35:01,662 adding 'vermouth/data/mappings/elnedyn/elnedyn22p/asn.charmm36.elnedyn22p.map' 2024-01-31T16:35:01,663 adding 'vermouth/data/mappings/elnedyn/elnedyn22p/asp.charmm36.elnedyn22p.map' 2024-01-31T16:35:01,664 adding 'vermouth/data/mappings/elnedyn/elnedyn22p/gln.charmm36.elnedyn22p.map' 2024-01-31T16:35:01,665 adding 'vermouth/data/mappings/elnedyn/elnedyn22p/glu.charmm36.elnedyn22p.map' 2024-01-31T16:35:01,666 adding 'vermouth/data/mappings/elnedyn/elnedyn22p/lys.charmm36.elnedyn22p.map' 2024-01-31T16:35:01,668 adding 'vermouth/data/mappings/elnedyn/elnedyn22p/ser.charmm36.elnedyn22p.map' 2024-01-31T16:35:01,669 adding 'vermouth/data/mappings/elnedyn/elnedyn22p/thr.charmm36.elnedyn22p.map' 2024-01-31T16:35:01,671 adding 'vermouth/data/mappings/elnedyn21/ala.charmm36.map' 2024-01-31T16:35:01,672 adding 'vermouth/data/mappings/elnedyn21/arg.charmm36.elnedyn22p.map' 2024-01-31T16:35:01,673 adding 'vermouth/data/mappings/elnedyn21/arg.charmm36.map' 2024-01-31T16:35:01,675 adding 'vermouth/data/mappings/elnedyn21/asn.charmm36.elnedyn22p.map' 2024-01-31T16:35:01,676 adding 'vermouth/data/mappings/elnedyn21/asn.charmm36.map' 2024-01-31T16:35:01,677 adding 'vermouth/data/mappings/elnedyn21/asp.charmm36.elnedyn22p.map' 2024-01-31T16:35:01,678 adding 'vermouth/data/mappings/elnedyn21/asp.charmm36.map' 2024-01-31T16:35:01,680 adding 'vermouth/data/mappings/elnedyn21/cys.charmm36.map' 2024-01-31T16:35:01,681 adding 'vermouth/data/mappings/elnedyn21/gln.charmm36.elnedyn22p.map' 2024-01-31T16:35:01,682 adding 'vermouth/data/mappings/elnedyn21/gln.charmm36.map' 2024-01-31T16:35:01,683 adding 'vermouth/data/mappings/elnedyn21/glu.charmm36.elnedyn22p.map' 2024-01-31T16:35:01,685 adding 'vermouth/data/mappings/elnedyn21/glu.charmm36.map' 2024-01-31T16:35:01,686 adding 'vermouth/data/mappings/elnedyn21/gly.charmm36.map' 2024-01-31T16:35:01,687 adding 'vermouth/data/mappings/elnedyn21/his.charmm36.map' 2024-01-31T16:35:01,689 adding 'vermouth/data/mappings/elnedyn21/ile.charmm36.map' 2024-01-31T16:35:01,690 adding 'vermouth/data/mappings/elnedyn21/leu.charmm36.map' 2024-01-31T16:35:01,691 adding 'vermouth/data/mappings/elnedyn21/lys.charmm36.elnedyn22p.map' 2024-01-31T16:35:01,693 adding 'vermouth/data/mappings/elnedyn21/lys.charmm36.map' 2024-01-31T16:35:01,694 adding 'vermouth/data/mappings/elnedyn21/met.charmm36.map' 2024-01-31T16:35:01,695 adding 'vermouth/data/mappings/elnedyn21/modifications.mapping' 2024-01-31T16:35:01,696 adding 'vermouth/data/mappings/elnedyn21/phe.charmm36.map' 2024-01-31T16:35:01,698 adding 'vermouth/data/mappings/elnedyn21/pro.charmm36.map' 2024-01-31T16:35:01,699 adding 'vermouth/data/mappings/elnedyn21/ser.charmm36.elnedyn22p.map' 2024-01-31T16:35:01,700 adding 'vermouth/data/mappings/elnedyn21/ser.charmm36.map' 2024-01-31T16:35:01,701 adding 'vermouth/data/mappings/elnedyn21/thr.charmm36.elnedyn22p.map' 2024-01-31T16:35:01,703 adding 'vermouth/data/mappings/elnedyn21/thr.charmm36.map' 2024-01-31T16:35:01,704 adding 'vermouth/data/mappings/elnedyn21/trp.charmm36.map' 2024-01-31T16:35:01,705 adding 'vermouth/data/mappings/elnedyn21/tyr.charmm36.map' 2024-01-31T16:35:01,706 adding 'vermouth/data/mappings/elnedyn21/val.charmm36.map' 2024-01-31T16:35:01,710 adding 'vermouth/data/mappings/martini3001/ala.amber.map' 2024-01-31T16:35:01,711 adding 'vermouth/data/mappings/martini3001/ala.charmm36.map' 2024-01-31T16:35:01,713 adding 'vermouth/data/mappings/martini3001/antr.charmm36.map' 2024-01-31T16:35:01,714 adding 'vermouth/data/mappings/martini3001/arg.amber.map' 2024-01-31T16:35:01,715 adding 'vermouth/data/mappings/martini3001/arg.charmm36.map' 2024-01-31T16:35:01,716 adding 'vermouth/data/mappings/martini3001/ash.amber.map' 2024-01-31T16:35:01,718 adding 'vermouth/data/mappings/martini3001/asn.amber.map' 2024-01-31T16:35:01,719 adding 'vermouth/data/mappings/martini3001/asn.charmm36.map' 2024-01-31T16:35:01,720 adding 'vermouth/data/mappings/martini3001/asp.amber.map' 2024-01-31T16:35:01,721 adding 'vermouth/data/mappings/martini3001/asp.charmm36.map' 2024-01-31T16:35:01,722 adding 'vermouth/data/mappings/martini3001/aspp.charmm36.map' 2024-01-31T16:35:01,724 adding 'vermouth/data/mappings/martini3001/bald.charmm36.map' 2024-01-31T16:35:01,725 adding 'vermouth/data/mappings/martini3001/benz.charmm36.map' 2024-01-31T16:35:01,726 adding 'vermouth/data/mappings/martini3001/c3.charmm36.map' 2024-01-31T16:35:01,728 adding 'vermouth/data/mappings/martini3001/chxe.charmm36.map' 2024-01-31T16:35:01,729 adding 'vermouth/data/mappings/martini3001/cpen.charmm36.map' 2024-01-31T16:35:01,731 adding 'vermouth/data/mappings/martini3001/cume.charmm36.map' 2024-01-31T16:35:01,732 adding 'vermouth/data/mappings/martini3001/cys.amber.map' 2024-01-31T16:35:01,733 adding 'vermouth/data/mappings/martini3001/cys.charmm36.map' 2024-01-31T16:35:01,734 adding 'vermouth/data/mappings/martini3001/diol.charmm36.map' 2024-01-31T16:35:01,735 adding 'vermouth/data/mappings/martini3001/diox.charmm36.map' 2024-01-31T16:35:01,737 adding 'vermouth/data/mappings/martini3001/dman.charmm36.map' 2024-01-31T16:35:01,738 adding 'vermouth/data/mappings/martini3001/eben.charmm36.map' 2024-01-31T16:35:01,739 adding 'vermouth/data/mappings/martini3001/fura.charmm36.map' 2024-01-31T16:35:01,740 adding 'vermouth/data/mappings/martini3001/glh.amber.map' 2024-01-31T16:35:01,742 adding 'vermouth/data/mappings/martini3001/gln.amber.map' 2024-01-31T16:35:01,743 adding 'vermouth/data/mappings/martini3001/gln.charmm36.map' 2024-01-31T16:35:01,744 adding 'vermouth/data/mappings/martini3001/glu.amber.map' 2024-01-31T16:35:01,745 adding 'vermouth/data/mappings/martini3001/glu.charmm36.map' 2024-01-31T16:35:01,747 adding 'vermouth/data/mappings/martini3001/glup.charmm36.map' 2024-01-31T16:35:01,748 adding 'vermouth/data/mappings/martini3001/gly.amber.map' 2024-01-31T16:35:01,749 adding 'vermouth/data/mappings/martini3001/gly.charmm36.map' 2024-01-31T16:35:01,751 adding 'vermouth/data/mappings/martini3001/hid.amber.map' 2024-01-31T16:35:01,752 adding 'vermouth/data/mappings/martini3001/hie.amber.map' 2024-01-31T16:35:01,753 adding 'vermouth/data/mappings/martini3001/hip.amber.map' 2024-01-31T16:35:01,754 adding 'vermouth/data/mappings/martini3001/his.amber.map' 2024-01-31T16:35:01,756 adding 'vermouth/data/mappings/martini3001/his.charmm36.map' 2024-01-31T16:35:01,757 adding 'vermouth/data/mappings/martini3001/hsd.charmm36.map' 2024-01-31T16:35:01,758 adding 'vermouth/data/mappings/martini3001/hse.charmm36.map' 2024-01-31T16:35:01,760 adding 'vermouth/data/mappings/martini3001/hsp.charmm36.map' 2024-01-31T16:35:01,761 adding 'vermouth/data/mappings/martini3001/ile.amber.map' 2024-01-31T16:35:01,763 adding 'vermouth/data/mappings/martini3001/ile.charmm36.map' 2024-01-31T16:35:01,764 adding 'vermouth/data/mappings/martini3001/imia.charmm36.map' 2024-01-31T16:35:01,765 adding 'vermouth/data/mappings/martini3001/inda.charmm36.map' 2024-01-31T16:35:01,766 adding 'vermouth/data/mappings/martini3001/indo.charmm36.map' 2024-01-31T16:35:01,767 adding 'vermouth/data/mappings/martini3001/leu.amber.map' 2024-01-31T16:35:01,769 adding 'vermouth/data/mappings/martini3001/leu.charmm36.map' 2024-01-31T16:35:01,770 adding 'vermouth/data/mappings/martini3001/lsn.charmm36.map' 2024-01-31T16:35:01,772 adding 'vermouth/data/mappings/martini3001/lyn.amber.map' 2024-01-31T16:35:01,773 adding 'vermouth/data/mappings/martini3001/lys.amber.map' 2024-01-31T16:35:01,774 adding 'vermouth/data/mappings/martini3001/lys.charmm36.map' 2024-01-31T16:35:01,775 adding 'vermouth/data/mappings/martini3001/mboa.charmm36.map' 2024-01-31T16:35:01,777 adding 'vermouth/data/mappings/martini3001/mcpe.charmm36.map' 2024-01-31T16:35:01,778 adding 'vermouth/data/mappings/martini3001/meob.charmm36.map' 2024-01-31T16:35:01,779 adding 'vermouth/data/mappings/martini3001/met.amber.map' 2024-01-31T16:35:01,780 adding 'vermouth/data/mappings/martini3001/met.charmm36.map' 2024-01-31T16:35:01,781 adding 'vermouth/data/mappings/martini3001/mind.charmm36.map' 2024-01-31T16:35:01,783 adding 'vermouth/data/mappings/martini3001/modifications.amber.mapping' 2024-01-31T16:35:01,784 adding 'vermouth/data/mappings/martini3001/modifications.charmm36.mapping' 2024-01-31T16:35:01,785 adding 'vermouth/data/mappings/martini3001/mxyl.charmm36.map' 2024-01-31T16:35:01,786 adding 'vermouth/data/mappings/martini3001/naft.charmm36.map' 2024-01-31T16:35:01,787 adding 'vermouth/data/mappings/martini3001/nitb.charmm36.map' 2024-01-31T16:35:01,789 adding 'vermouth/data/mappings/martini3001/oxyl.charmm36.map' 2024-01-31T16:35:01,790 adding 'vermouth/data/mappings/martini3001/pcro.charmm36.map' 2024-01-31T16:35:01,791 adding 'vermouth/data/mappings/martini3001/phe.amber.map' 2024-01-31T16:35:01,793 adding 'vermouth/data/mappings/martini3001/phe.charmm36.map' 2024-01-31T16:35:01,794 adding 'vermouth/data/mappings/martini3001/phen.charmm36.map' 2024-01-31T16:35:01,795 adding 'vermouth/data/mappings/martini3001/phmk.charmm36.map' 2024-01-31T16:35:01,797 adding 'vermouth/data/mappings/martini3001/prld.charmm36.map' 2024-01-31T16:35:01,798 adding 'vermouth/data/mappings/martini3001/pro.amber.map' 2024-01-31T16:35:01,800 adding 'vermouth/data/mappings/martini3001/pro.charmm36.map' 2024-01-31T16:35:01,801 adding 'vermouth/data/mappings/martini3001/pxyl.charmm36.map' 2024-01-31T16:35:01,802 adding 'vermouth/data/mappings/martini3001/pyr1.charmm36.map' 2024-01-31T16:35:01,803 adding 'vermouth/data/mappings/martini3001/pyrd.charmm36.map' 2024-01-31T16:35:01,805 adding 'vermouth/data/mappings/martini3001/pyrl.charmm36.map' 2024-01-31T16:35:01,806 adding 'vermouth/data/mappings/martini3001/pyrm.charmm36.map' 2024-01-31T16:35:01,807 adding 'vermouth/data/mappings/martini3001/qinl.charmm36.map' 2024-01-31T16:35:01,808 adding 'vermouth/data/mappings/martini3001/ser.amber.map' 2024-01-31T16:35:01,809 adding 'vermouth/data/mappings/martini3001/ser.charmm36.map' 2024-01-31T16:35:01,811 adding 'vermouth/data/mappings/martini3001/sm139.charmm36.map' 2024-01-31T16:35:01,812 adding 'vermouth/data/mappings/martini3001/styr.charmm36.map' 2024-01-31T16:35:01,813 adding 'vermouth/data/mappings/martini3001/thaz.charmm36.map' 2024-01-31T16:35:01,814 adding 'vermouth/data/mappings/martini3001/thf.charmm36.map' 2024-01-31T16:35:01,815 adding 'vermouth/data/mappings/martini3001/thip.charmm36.map' 2024-01-31T16:35:01,817 adding 'vermouth/data/mappings/martini3001/thp.charmm36.map' 2024-01-31T16:35:01,818 adding 'vermouth/data/mappings/martini3001/thr.amber.map' 2024-01-31T16:35:01,819 adding 'vermouth/data/mappings/martini3001/thr.charmm36.map' 2024-01-31T16:35:01,820 adding 'vermouth/data/mappings/martini3001/tolu.charmm36.map' 2024-01-31T16:35:01,822 adding 'vermouth/data/mappings/martini3001/trp.amber.map' 2024-01-31T16:35:01,823 adding 'vermouth/data/mappings/martini3001/trp.charmm36.map' 2024-01-31T16:35:01,824 adding 'vermouth/data/mappings/martini3001/tyr.amber.map' 2024-01-31T16:35:01,825 adding 'vermouth/data/mappings/martini3001/tyr.charmm36.map' 2024-01-31T16:35:01,827 adding 'vermouth/data/mappings/martini3001/val.amber.map' 2024-01-31T16:35:01,828 adding 'vermouth/data/mappings/martini3001/val.charmm36.map' 2024-01-31T16:35:01,829 adding 'vermouth/data/mappings/martini3001/zimi.charmm36.map' 2024-01-31T16:35:01,830 adding 'vermouth/data/mappings/martini3001/zthp.charmm36.map' 2024-01-31T16:35:01,831 adding 'vermouth/data/mappings/martini3001/zthz.charmm36.map' 2024-01-31T16:35:01,834 adding 'vermouth/data/mappings/martini30b32/ala.charmm36.map' 2024-01-31T16:35:01,835 adding 'vermouth/data/mappings/martini30b32/arg.charmm36.map' 2024-01-31T16:35:01,836 adding 'vermouth/data/mappings/martini30b32/asn.charmm36.map' 2024-01-31T16:35:01,837 adding 'vermouth/data/mappings/martini30b32/asp.charmm36.map' 2024-01-31T16:35:01,838 adding 'vermouth/data/mappings/martini30b32/benz.charmm36.map' 2024-01-31T16:35:01,840 adding 'vermouth/data/mappings/martini30b32/cys.charmm36.map' 2024-01-31T16:35:01,841 adding 'vermouth/data/mappings/martini30b32/gln.charmm36.map' 2024-01-31T16:35:01,842 adding 'vermouth/data/mappings/martini30b32/glu.charmm36.map' 2024-01-31T16:35:01,843 adding 'vermouth/data/mappings/martini30b32/gly.charmm36.map' 2024-01-31T16:35:01,845 adding 'vermouth/data/mappings/martini30b32/his.charmm36.map' 2024-01-31T16:35:01,846 adding 'vermouth/data/mappings/martini30b32/hsd.charmm36.map' 2024-01-31T16:35:01,847 adding 'vermouth/data/mappings/martini30b32/ile.charmm36.map' 2024-01-31T16:35:01,849 adding 'vermouth/data/mappings/martini30b32/leu.charmm36.map' 2024-01-31T16:35:01,850 adding 'vermouth/data/mappings/martini30b32/lys.charmm36.map' 2024-01-31T16:35:01,851 adding 'vermouth/data/mappings/martini30b32/met.charmm36.map' 2024-01-31T16:35:01,853 adding 'vermouth/data/mappings/martini30b32/modifications.mapping' 2024-01-31T16:35:01,854 adding 'vermouth/data/mappings/martini30b32/phe.charmm36.map' 2024-01-31T16:35:01,855 adding 'vermouth/data/mappings/martini30b32/pro.charmm36.map' 2024-01-31T16:35:01,857 adding 'vermouth/data/mappings/martini30b32/ser.charmm36.map' 2024-01-31T16:35:01,858 adding 'vermouth/data/mappings/martini30b32/thr.charmm36.map' 2024-01-31T16:35:01,859 adding 'vermouth/data/mappings/martini30b32/trp.charmm36.map' 2024-01-31T16:35:01,861 adding 'vermouth/data/mappings/martini30b32/tyr.charmm36.map' 2024-01-31T16:35:01,862 adding 'vermouth/data/mappings/martini30b32/val.charmm36.map' 2024-01-31T16:35:01,864 adding 'vermouth/dssp/__init__.py' 2024-01-31T16:35:01,867 adding 'vermouth/dssp/dssp.py' 2024-01-31T16:35:01,869 adding 'vermouth/gmx/__init__.py' 2024-01-31T16:35:01,871 adding 'vermouth/gmx/gro.py' 2024-01-31T16:35:01,873 adding 'vermouth/gmx/itp.py' 2024-01-31T16:35:01,875 adding 'vermouth/gmx/itp_read.py' 2024-01-31T16:35:01,878 adding 'vermouth/gmx/rtp.py' 2024-01-31T16:35:01,880 adding 'vermouth/gmx/topology.py' 2024-01-31T16:35:01,882 adding 'vermouth/graphing/grappa.py' 2024-01-31T16:35:01,884 adding 'vermouth/pdb/__init__.py' 2024-01-31T16:35:01,887 adding 'vermouth/pdb/pdb.py' 2024-01-31T16:35:01,889 adding 'vermouth/processors/__init__.py' 2024-01-31T16:35:01,891 adding 'vermouth/processors/add_molecule_edges.py' 2024-01-31T16:35:01,893 adding 'vermouth/processors/annotate_mut_mod.py' 2024-01-31T16:35:01,894 adding 'vermouth/processors/apply_posres.py' 2024-01-31T16:35:01,897 adding 'vermouth/processors/apply_rubber_band.py' 2024-01-31T16:35:01,899 adding 'vermouth/processors/attach_mass.py' 2024-01-31T16:35:01,900 adding 'vermouth/processors/average_beads.py' 2024-01-31T16:35:01,902 adding 'vermouth/processors/canonicalize_modifications.py' 2024-01-31T16:35:01,905 adding 'vermouth/processors/do_links.py' 2024-01-31T16:35:01,910 adding 'vermouth/processors/do_mapping.py' 2024-01-31T16:35:01,911 adding 'vermouth/processors/gro_reader.py' 2024-01-31T16:35:01,913 adding 'vermouth/processors/locate_charge_dummies.py' 2024-01-31T16:35:01,915 adding 'vermouth/processors/make_bonds.py' 2024-01-31T16:35:01,916 adding 'vermouth/processors/merge_all_molecules.py' 2024-01-31T16:35:01,918 adding 'vermouth/processors/merge_chains.py' 2024-01-31T16:35:01,919 adding 'vermouth/processors/name_moltype.py' 2024-01-31T16:35:01,920 adding 'vermouth/processors/pdb_reader.py' 2024-01-31T16:35:01,922 adding 'vermouth/processors/processor.py' 2024-01-31T16:35:01,923 adding 'vermouth/processors/quote.py' 2024-01-31T16:35:01,924 adding 'vermouth/processors/rename_modified_residues.py' 2024-01-31T16:35:01,927 adding 'vermouth/processors/repair_graph.py' 2024-01-31T16:35:01,929 adding 'vermouth/processors/set_molecule_meta.py' 2024-01-31T16:35:01,930 adding 'vermouth/processors/sort_molecule_atoms.py' 2024-01-31T16:35:01,931 adding 'vermouth/processors/tune_cystein_bridges.py' 2024-01-31T16:35:01,933 adding 'vermouth/processors/water_bias.py' 2024-01-31T16:35:01,935 adding 'vermouth/rcsu/__init__.py' 2024-01-31T16:35:01,936 adding 'vermouth/rcsu/contact_map.py' 2024-01-31T16:35:01,937 adding 'vermouth/rcsu/go_pipeline.py' 2024-01-31T16:35:01,939 adding 'vermouth/rcsu/go_structure_bias.py' 2024-01-31T16:35:01,940 adding 'vermouth/rcsu/go_utils.py' 2024-01-31T16:35:01,942 adding 'vermouth/rcsu/go_vs_includes.py' 2024-01-31T16:35:01,944 adding 'vermouth/tests/__init__.py' 2024-01-31T16:35:01,945 adding 'vermouth/tests/datafiles.py' 2024-01-31T16:35:01,947 adding 'vermouth/tests/helper_functions.py' 2024-01-31T16:35:01,948 adding 'vermouth/tests/molecule_strategies.py' 2024-01-31T16:35:01,950 adding 'vermouth/tests/test_add_molecule_edges.py' 2024-01-31T16:35:01,952 adding 'vermouth/tests/test_annotate_mut_mod.py' 2024-01-31T16:35:01,954 adding 'vermouth/tests/test_apply_rubber_band.py' 2024-01-31T16:35:01,955 adding 'vermouth/tests/test_average_beads.py' 2024-01-31T16:35:01,958 adding 'vermouth/tests/test_do_mapping.py' 2024-01-31T16:35:01,960 adding 'vermouth/tests/test_dssp.py' 2024-01-31T16:35:01,963 adding 'vermouth/tests/test_edge_tuning.py' 2024-01-31T16:35:01,966 adding 'vermouth/tests/test_ff_files.py' 2024-01-31T16:35:01,969 adding 'vermouth/tests/test_ffinput.py' 2024-01-31T16:35:01,971 adding 'vermouth/tests/test_file_writer.py' 2024-01-31T16:35:01,972 adding 'vermouth/tests/test_forcefield.py' 2024-01-31T16:35:01,974 adding 'vermouth/tests/test_geometry.py' 2024-01-31T16:35:01,976 adding 'vermouth/tests/test_graph_utils.py' 2024-01-31T16:35:01,978 adding 'vermouth/tests/test_grappa.py' 2024-01-31T16:35:01,980 adding 'vermouth/tests/test_ismags.py' 2024-01-31T16:35:01,982 adding 'vermouth/tests/test_itp_files.py' 2024-01-31T16:35:01,984 adding 'vermouth/tests/test_links.py' 2024-01-31T16:35:01,986 adding 'vermouth/tests/test_logging.py' 2024-01-31T16:35:01,987 adding 'vermouth/tests/test_make_bonds.py' 2024-01-31T16:35:01,991 adding 'vermouth/tests/test_map_input.py' 2024-01-31T16:35:01,993 adding 'vermouth/tests/test_map_parser.py' 2024-01-31T16:35:01,994 adding 'vermouth/tests/test_mapping_integrative.py' 2024-01-31T16:35:01,998 adding 'vermouth/tests/test_molecule.py' 2024-01-31T16:35:02,000 adding 'vermouth/tests/test_name_moltype.py' 2024-01-31T16:35:02,001 adding 'vermouth/tests/test_native_forcefield.py' 2024-01-31T16:35:02,003 adding 'vermouth/tests/test_ptm_detection.py' 2024-01-31T16:35:02,005 adding 'vermouth/tests/test_repair_graph.py' 2024-01-31T16:35:02,006 adding 'vermouth/tests/test_section_parser.py' 2024-01-31T16:35:02,008 adding 'vermouth/tests/test_selectors.py' 2024-01-31T16:35:02,009 adding 'vermouth/tests/test_set_molecule_meta.py' 2024-01-31T16:35:02,010 adding 'vermouth/tests/test_sort_molecule_atoms.py' 2024-01-31T16:35:02,012 adding 'vermouth/tests/test_tune_cystein_bridges.py' 2024-01-31T16:35:02,014 adding 'vermouth/tests/test_utils.py' 2024-01-31T16:35:02,015 adding 'vermouth/tests/test_version.py' 2024-01-31T16:35:02,016 adding 'vermouth/tests/test_vs_generation.py' 2024-01-31T16:35:02,018 adding 'vermouth/tests/test_water_bias.py' 2024-01-31T16:35:02,039 adding 'vermouth/tests/data/1bta.pdb' 2024-01-31T16:35:02,061 adding 'vermouth/tests/data/1bta_mutated.pdb' 2024-01-31T16:35:02,126 adding 'vermouth/tests/data/2QWO.pdb' 2024-01-31T16:35:02,266 adding 'vermouth/tests/data/2dn2.pdb' 2024-01-31T16:35:02,786 adding 'vermouth/tests/data/6E8W.pdb' 2024-01-31T16:35:02,808 adding 'vermouth/tests/data/ala5.pdb' 2024-01-31T16:35:02,809 adding 'vermouth/tests/data/ala5_cg.pdb' 2024-01-31T16:35:02,811 adding 'vermouth/tests/data/dna-short.pdb' 2024-01-31T16:35:02,813 adding 'vermouth/tests/data/heme.pdb' 2024-01-31T16:35:02,814 adding 'vermouth/tests/data/tri_alanine.pdb' 2024-01-31T16:35:02,818 adding 'vermouth/tests/data/dssp_tests/dssp_1bta.ssd' 2024-01-31T16:35:02,819 adding 'vermouth/tests/data/dssp_tests/mini-protein1_betasheet.pdb.v2.2.1-3b2-deb_cv1.ssd' 2024-01-31T16:35:02,821 adding 'vermouth/tests/data/dssp_tests/mini-protein1_betasheet.pdb.v3.0.0-3b1-deb_cv1.ssd' 2024-01-31T16:35:02,823 adding 'vermouth/tests/data/dssp_tests/mini-protein2_helix.pdb.v2.2.1-3b2-deb_cv1.ssd' 2024-01-31T16:35:02,825 adding 'vermouth/tests/data/dssp_tests/mini-protein2_helix.pdb.v3.0.0-3b1-deb_cv1.ssd' 2024-01-31T16:35:02,827 adding 'vermouth/tests/data/dssp_tests/mini-protein3_trp-cage.pdb.v2.2.1-3b2-deb_cv1.ssd' 2024-01-31T16:35:02,829 adding 'vermouth/tests/data/dssp_tests/mini-protein3_trp-cage.pdb.v3.0.0-3b1-deb_cv1.ssd' 2024-01-31T16:35:02,832 adding 'vermouth/tests/data/force_fields/martini-test/aminoacids.ff' 2024-01-31T16:35:02,834 adding 'vermouth/tests/data/force_fields/pepplane/ala.ff' 2024-01-31T16:35:02,835 adding 'vermouth/tests/data/force_fields/pepplane/general.ff' 2024-01-31T16:35:02,836 adding 'vermouth/tests/data/force_fields/pepplane/modifications.ff' 2024-01-31T16:35:02,840 adding 'vermouth/tests/data/force_fields/universal-test/aminoacids.rtp' 2024-01-31T16:35:02,841 adding 'vermouth/tests/data/force_fields/universal-test/modifications.ff' 2024-01-31T16:35:02,843 adding 'vermouth/tests/data/integration_tests/tier-0/dipro-termini/README' 2024-01-31T16:35:02,845 adding 'vermouth/tests/data/integration_tests/tier-0/dipro-termini/aa.pdb' 2024-01-31T16:35:02,847 adding 'vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/cg.pdb' 2024-01-31T16:35:02,848 adding 'vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/citation' 2024-01-31T16:35:02,849 adding 'vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/command' 2024-01-31T16:35:02,850 adding 'vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/molecule_0.itp' 2024-01-31T16:35:02,851 adding 'vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/topol.top' 2024-01-31T16:35:02,853 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/README' 2024-01-31T16:35:02,858 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/aa.pdb' 2024-01-31T16:35:02,861 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/cg.pdb' 2024-01-31T16:35:02,863 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/chain_A.ssd' 2024-01-31T16:35:02,864 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/citation' 2024-01-31T16:35:02,865 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/command' 2024-01-31T16:35:02,867 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/molecule_0.itp' 2024-01-31T16:35:02,868 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/screen.output' 2024-01-31T16:35:02,869 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/topol.top' 2024-01-31T16:35:02,871 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/README' 2024-01-31T16:35:02,879 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/aa.pdb' 2024-01-31T16:35:02,882 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/cg.pdb' 2024-01-31T16:35:02,884 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/chain_A.ssd' 2024-01-31T16:35:02,885 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/citation' 2024-01-31T16:35:02,887 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/command' 2024-01-31T16:35:02,889 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/molecule_0.itp' 2024-01-31T16:35:02,890 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/screen.output' 2024-01-31T16:35:02,891 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/topol.top' 2024-01-31T16:35:02,893 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/README' 2024-01-31T16:35:02,896 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/aa.pdb' 2024-01-31T16:35:02,898 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/cg.pdb' 2024-01-31T16:35:02,900 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/chain_A.ssd' 2024-01-31T16:35:02,901 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/citation' 2024-01-31T16:35:02,902 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/command' 2024-01-31T16:35:02,903 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/molecule_0.itp' 2024-01-31T16:35:02,905 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/screen.output' 2024-01-31T16:35:02,906 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/topol.top' 2024-01-31T16:35:02,908 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/README' 2024-01-31T16:35:02,973 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/aa.pdb' 2024-01-31T16:35:02,985 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/cg.pdb' 2024-01-31T16:35:02,987 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/cg.top' 2024-01-31T16:35:02,997 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/chain_.ssd' 2024-01-31T16:35:02,998 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/citation' 2024-01-31T16:35:02,999 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/command' 2024-01-31T16:35:03,019 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/molecule_0.itp' 2024-01-31T16:35:03,021 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/screen.output' 2024-01-31T16:35:03,023 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/README' 2024-01-31T16:35:03,087 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/aa.pdb' 2024-01-31T16:35:03,099 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/cg.pdb' 2024-01-31T16:35:03,101 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/cg.top' 2024-01-31T16:35:03,111 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/chain_.ssd' 2024-01-31T16:35:03,112 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/citation' 2024-01-31T16:35:03,113 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/command' 2024-01-31T16:35:03,133 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/molecule_0.itp' 2024-01-31T16:35:03,135 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/screen.output' 2024-01-31T16:35:03,144 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/3i40.pdb' 2024-01-31T16:35:03,146 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/README' 2024-01-31T16:35:03,149 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/cg.pdb' 2024-01-31T16:35:03,150 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/cg.top' 2024-01-31T16:35:03,152 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/chain_A.ssd' 2024-01-31T16:35:03,155 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/chain_C.ssd' 2024-01-31T16:35:03,156 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/citation' 2024-01-31T16:35:03,157 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/command' 2024-01-31T16:35:03,160 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/insulin_dimer.itp' 2024-01-31T16:35:03,163 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/molecule_0.itp' 2024-01-31T16:35:03,164 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/screen.output' 2024-01-31T16:35:03,193 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/6LFO_gap.pdb' 2024-01-31T16:35:03,195 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/README' 2024-01-31T16:35:03,203 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/cg.pdb' 2024-01-31T16:35:03,204 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/cg.top' 2024-01-31T16:35:03,206 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/chain_R.ssd' 2024-01-31T16:35:03,207 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/citation' 2024-01-31T16:35:03,209 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/command' 2024-01-31T16:35:03,226 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/molecule_0.itp' 2024-01-31T16:35:03,228 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/screen.output' 2024-01-31T16:35:03,230 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/README' 2024-01-31T16:35:03,238 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/aa.pdb' 2024-01-31T16:35:03,241 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/cg.pdb' 2024-01-31T16:35:03,243 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/cg.top' 2024-01-31T16:35:03,245 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/chain_A.ssd' 2024-01-31T16:35:03,246 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/citation' 2024-01-31T16:35:03,247 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/command' 2024-01-31T16:35:03,251 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/molecule_0.itp' 2024-01-31T16:35:03,252 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/screen.output' 2024-01-31T16:35:03,254 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/README' 2024-01-31T16:35:03,262 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/aa.pdb' 2024-01-31T16:35:03,265 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/cg.pdb' 2024-01-31T16:35:03,267 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/cg.top' 2024-01-31T16:35:03,269 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/chain_A.ssd' 2024-01-31T16:35:03,270 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/citation' 2024-01-31T16:35:03,272 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/command' 2024-01-31T16:35:03,275 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/molecule_0.itp' 2024-01-31T16:35:03,276 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/screen.output' 2024-01-31T16:35:03,278 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/README' 2024-01-31T16:35:03,288 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/aa.pdb' 2024-01-31T16:35:03,291 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/cg.pdb' 2024-01-31T16:35:03,294 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/chain_A.ssd' 2024-01-31T16:35:03,295 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/citation' 2024-01-31T16:35:03,297 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/command' 2024-01-31T16:35:03,300 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/molecule_0.itp' 2024-01-31T16:35:03,302 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/screen.output' 2024-01-31T16:35:03,304 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/topol.top' 2024-01-31T16:35:03,305 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/README' 2024-01-31T16:35:03,325 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/aa.pdb' 2024-01-31T16:35:03,330 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/cg.pdb' 2024-01-31T16:35:03,335 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/chain_A.ssd' 2024-01-31T16:35:03,336 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/citation' 2024-01-31T16:35:03,338 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/command' 2024-01-31T16:35:03,345 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/molecule_0.itp' 2024-01-31T16:35:03,347 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/screen.output' 2024-01-31T16:35:03,355 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/test.itp' 2024-01-31T16:35:03,357 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/topol.top' 2024-01-31T16:35:03,359 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/README' 2024-01-31T16:35:03,378 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/aa.pdb' 2024-01-31T16:35:03,392 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/map.map' 2024-01-31T16:35:03,399 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/martinize2/cg.pdb' 2024-01-31T16:35:03,400 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/martinize2/citation' 2024-01-31T16:35:03,401 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/martinize2/command' 2024-01-31T16:35:03,409 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/martinize2/molecule_0.itp' 2024-01-31T16:35:03,410 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/martinize2/topol.top' 2024-01-31T16:35:03,412 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/martinize2/virtual_sites_atomtypes.itp' 2024-01-31T16:35:03,413 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_ENbias/martinize2/virtual_sites_nonbond_params.itp' 2024-01-31T16:35:03,415 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/README' 2024-01-31T16:35:03,434 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/aa.pdb' 2024-01-31T16:35:03,448 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/map.map' 2024-01-31T16:35:03,454 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/martinize2/cg.pdb' 2024-01-31T16:35:03,456 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/martinize2/citation' 2024-01-31T16:35:03,457 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/martinize2/command' 2024-01-31T16:35:03,458 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/martinize2/go_atomtypes.itp' 2024-01-31T16:35:03,461 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/martinize2/go_nbparams.itp' 2024-01-31T16:35:03,467 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/martinize2/molecule_0.itp' 2024-01-31T16:35:03,469 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_GO/martinize2/topol.top' 2024-01-31T16:35:03,470 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/README' 2024-01-31T16:35:03,490 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/aa.pdb' 2024-01-31T16:35:03,504 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/map.map' 2024-01-31T16:35:03,510 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/martinize2/cg.pdb' 2024-01-31T16:35:03,511 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/martinize2/citation' 2024-01-31T16:35:03,512 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/martinize2/command' 2024-01-31T16:35:03,514 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/martinize2/go_atomtypes.itp' 2024-01-31T16:35:03,516 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/martinize2/go_nbparams.itp' 2024-01-31T16:35:03,523 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/martinize2/molecule_0.itp' 2024-01-31T16:35:03,524 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_GObias/martinize2/topol.top' 2024-01-31T16:35:03,526 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/README' 2024-01-31T16:35:03,546 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/aa.pdb' 2024-01-31T16:35:03,551 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/cg.pdb' 2024-01-31T16:35:03,555 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/chain_A.ssd' 2024-01-31T16:35:03,564 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/molecule_0.itp' 2024-01-31T16:35:03,565 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/topol.top' 2024-01-31T16:35:03,570 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/cg.pdb' 2024-01-31T16:35:03,575 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/chain_A.ssd' 2024-01-31T16:35:03,576 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/citation' 2024-01-31T16:35:03,577 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/command' 2024-01-31T16:35:03,586 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/molecule_0.itp' 2024-01-31T16:35:03,587 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/screen.output' 2024-01-31T16:35:03,595 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/test.itp' 2024-01-31T16:35:03,596 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/topol.top' 2024-01-31T16:35:03,598 adding 'vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/README' 2024-01-31T16:35:03,620 adding 'vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/input.pdb' 2024-01-31T16:35:03,626 adding 'vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/cg.pdb' 2024-01-31T16:35:03,627 adding 'vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/cg.top' 2024-01-31T16:35:03,632 adding 'vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/chain_.ssd' 2024-01-31T16:35:03,633 adding 'vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/citation' 2024-01-31T16:35:03,634 adding 'vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/command' 2024-01-31T16:35:03,643 adding 'vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/molecule_0.itp' 2024-01-31T16:35:03,645 adding 'vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/screen.output' 2024-01-31T16:35:03,646 adding 'vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/sys.top' 2024-01-31T16:35:03,647 adding 'vermouth/tests/data/integration_tests/tier-1/villin/README' 2024-01-31T16:35:03,651 adding 'vermouth/tests/data/integration_tests/tier-1/villin/aa.pdb' 2024-01-31T16:35:03,654 adding 'vermouth/tests/data/integration_tests/tier-1/villin/martinize2/cg.pdb' 2024-01-31T16:35:03,655 adding 'vermouth/tests/data/integration_tests/tier-1/villin/martinize2/citation' 2024-01-31T16:35:03,656 adding 'vermouth/tests/data/integration_tests/tier-1/villin/martinize2/command' 2024-01-31T16:35:03,658 adding 'vermouth/tests/data/integration_tests/tier-1/villin/martinize2/molecule_0.itp' 2024-01-31T16:35:03,660 adding 'vermouth/tests/data/integration_tests/tier-1/villin/martinize2/screen.output' 2024-01-31T16:35:03,661 adding 'vermouth/tests/data/integration_tests/tier-1/villin/martinize2/topol.top' 2024-01-31T16:35:03,663 adding 'vermouth/tests/data/mappings/universal-test/martini-test/ser.mapping' 2024-01-31T16:35:03,665 adding 'vermouth/tests/data/mappings/universal-test/pepplane/ala.mapping' 2024-01-31T16:35:03,666 adding 'vermouth/tests/data/mappings/universal-test/pepplane/modifications.mapping' 2024-01-31T16:35:03,669 adding 'vermouth/tests/gmx/test_gro.py' 2024-01-31T16:35:03,670 adding 'vermouth/tests/gmx/test_itp.py' 2024-01-31T16:35:03,672 adding 'vermouth/tests/gmx/test_topology.py' 2024-01-31T16:35:03,673 adding 'vermouth/tests/integration_tests/__init__.py' 2024-01-31T16:35:03,675 adding 'vermouth/tests/integration_tests/test_integration.py' 2024-01-31T16:35:03,677 adding 'vermouth/tests/pdb/test_read_pdb.py' 2024-01-31T16:35:03,679 adding 'vermouth/tests/pdb/test_write_pdb.py' 2024-01-31T16:35:03,681 adding 'vermouth/tests/rcsu/test_go_structure_bias.py' 2024-01-31T16:35:03,682 adding 'vermouth/tests/rcsu/test_go_utils.py' 2024-01-31T16:35:03,683 adding 'vermouth/tests/rcsu/test_read_go_map.py' 2024-01-31T16:35:03,689 adding 'vermouth-0.10.0.data/scripts/martinize2' 2024-01-31T16:35:03,692 adding 'vermouth-0.10.0.dist-info/LICENSE' 2024-01-31T16:35:03,693 adding 'vermouth-0.10.0.dist-info/METADATA' 2024-01-31T16:35:03,694 adding 'vermouth-0.10.0.dist-info/WHEEL' 2024-01-31T16:35:03,695 adding 'vermouth-0.10.0.dist-info/pbr.json' 2024-01-31T16:35:03,696 adding 'vermouth-0.10.0.dist-info/top_level.txt' 2024-01-31T16:35:03,706 adding 'vermouth-0.10.0.dist-info/RECORD' 2024-01-31T16:35:03,751 removing build/bdist.linux-armv7l/wheel 2024-01-31T16:35:04,017 Building wheel for vermouth (pyproject.toml): finished with status 'done' 2024-01-31T16:35:04,080 Created wheel for vermouth: filename=vermouth-0.10.0-py2.py3-none-any.whl size=3018059 sha256=25673708980bf393cb0529971417a3ad1181f371b5ebb6c3beb26458a6dd672f 2024-01-31T16:35:04,082 Stored in directory: /tmp/pip-ephem-wheel-cache-hcn3jaz4/wheels/a9/47/5a/0fdc6b884ead06cb97be928a7c293eee345460db42974040c0 2024-01-31T16:35:04,111 Successfully built vermouth 2024-01-31T16:35:04,190 Removed build tracker: '/tmp/pip-build-tracker-oa6j4env'