2024-02-01T19:28:33,828 Created temporary directory: /tmp/pip-build-tracker-zkobz2xt 2024-02-01T19:28:33,829 Initialized build tracking at /tmp/pip-build-tracker-zkobz2xt 2024-02-01T19:28:33,830 Created build tracker: /tmp/pip-build-tracker-zkobz2xt 2024-02-01T19:28:33,830 Entered build tracker: /tmp/pip-build-tracker-zkobz2xt 2024-02-01T19:28:33,831 Created temporary directory: /tmp/pip-wheel-din2eymd 2024-02-01T19:28:33,834 Created temporary directory: /tmp/pip-ephem-wheel-cache-9k471cdl 2024-02-01T19:28:33,856 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-02-01T19:28:33,860 2 location(s) to search for versions of porous-media: 2024-02-01T19:28:33,860 * https://pypi.org/simple/porous-media/ 2024-02-01T19:28:33,860 * https://www.piwheels.org/simple/porous-media/ 2024-02-01T19:28:33,861 Fetching project page and analyzing links: https://pypi.org/simple/porous-media/ 2024-02-01T19:28:33,861 Getting page https://pypi.org/simple/porous-media/ 2024-02-01T19:28:33,863 Found index url https://pypi.org/simple/ 2024-02-01T19:28:34,071 Fetched page https://pypi.org/simple/porous-media/ as application/vnd.pypi.simple.v1+json 2024-02-01T19:28:34,074 Skipping link: No binaries permitted for porous-media: https://files.pythonhosted.org/packages/8d/aa/23156715fa495249b2758769e4fa2567e7760d8163a52093c07b32cab1f7/porous_media-0.1.0-py2.py3-none-any.whl (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9) 2024-02-01T19:28:34,075 Found link https://files.pythonhosted.org/packages/03/ae/895e5a752d9520e0cab951bb55c0cf72a1b030407edf4f68df420e091dbf/porous_media-0.1.0.tar.gz (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9), version: 0.1.0 2024-02-01T19:28:34,075 Skipping link: No binaries permitted for porous-media: https://files.pythonhosted.org/packages/7a/2b/68bf0447869b0e05a5d80d56fa7e51b643a0361dea2fbeda73da2d2ea5e6/porous_media-0.1.1-py2.py3-none-any.whl (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9) 2024-02-01T19:28:34,076 Found link https://files.pythonhosted.org/packages/1c/19/afaf97f13a4c6782bfb31883c7bfe177c7ec44e00708fac2c72e570d30b7/porous_media-0.1.1.tar.gz (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9), version: 0.1.1 2024-02-01T19:28:34,077 Skipping link: No binaries permitted for porous-media: https://files.pythonhosted.org/packages/4e/7f/dd78526e28ad2a7aaef881c6cde3d259c9a6878e5119f7bea051dba2b901/porous_media-0.1.2-py2.py3-none-any.whl (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9) 2024-02-01T19:28:34,078 Found link https://files.pythonhosted.org/packages/c6/10/1fb8da0ed29a49642f003f479d058d99b17a25fb39718c8059447e81f19b/porous_media-0.1.2.tar.gz (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9), version: 0.1.2 2024-02-01T19:28:34,078 Skipping link: No binaries permitted for porous-media: https://files.pythonhosted.org/packages/09/d1/d05f573f6a568b9e5a5b8c312f82b13987a1c09883b2310b71a554660ed2/porous_media-0.1.3-py2.py3-none-any.whl (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9) 2024-02-01T19:28:34,079 Found link https://files.pythonhosted.org/packages/12/37/9300f1927b7193000a0808c54e609207a5b6e48a7cb6dcadb727fd0d5eab/porous_media-0.1.3.tar.gz (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9), version: 0.1.3 2024-02-01T19:28:34,080 Skipping link: No binaries permitted for porous-media: https://files.pythonhosted.org/packages/28/5b/52c6fa3fed13747d0eb33d9adfbb1bc241529e4d065d527de90e9ed291af/porous_media-0.1.5-py2.py3-none-any.whl (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9) 2024-02-01T19:28:34,081 Found link https://files.pythonhosted.org/packages/ff/13/4e9c4f8698177f147b15ea3a97bd35d1d6db20cb6d48e06b46b11c9402f3/porous_media-0.1.5.tar.gz (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9), version: 0.1.5 2024-02-01T19:28:34,082 Fetching project page and analyzing links: https://www.piwheels.org/simple/porous-media/ 2024-02-01T19:28:34,083 Getting page https://www.piwheels.org/simple/porous-media/ 2024-02-01T19:28:34,084 Found index url https://www.piwheels.org/simple/ 2024-02-01T19:28:34,241 Fetched page https://www.piwheels.org/simple/porous-media/ as text/html 2024-02-01T19:28:34,243 Skipping link: No binaries permitted for porous-media: https://www.piwheels.org/simple/porous-media/porous_media-0.1.3-py2.py3-none-any.whl#sha256=da500be3d674cd26bb4400cda802088fd4e1361080a4be1a2e2f525bd050aec3 (from https://www.piwheels.org/simple/porous-media/) (requires-python:>=3.9) 2024-02-01T19:28:34,244 Skipping link: No binaries permitted for porous-media: https://www.piwheels.org/simple/porous-media/porous_media-0.1.2-py2.py3-none-any.whl#sha256=2e11acfaa8901230a1cbff1cec7bb5c9ad8d629684ba176b9a36ff622fdee90b (from https://www.piwheels.org/simple/porous-media/) (requires-python:>=3.9) 2024-02-01T19:28:34,245 Skipping link: No binaries permitted for porous-media: https://www.piwheels.org/simple/porous-media/porous_media-0.1.1-py2.py3-none-any.whl#sha256=73590dad04a9e67fda010bcf97fe37b17fd0f4c3403cf4e475f9a2c3c2330626 (from https://www.piwheels.org/simple/porous-media/) (requires-python:>=3.9) 2024-02-01T19:28:34,245 Skipping link: No binaries permitted for porous-media: https://www.piwheels.org/simple/porous-media/porous_media-0.1.0-py2.py3-none-any.whl#sha256=92ec168e839a0e69eacf0b16c74c0afc9240778d9298a93c919a19459c34dea0 (from https://www.piwheels.org/simple/porous-media/) (requires-python:>=3.9) 2024-02-01T19:28:34,245 Skipping link: not a file: https://www.piwheels.org/simple/porous-media/ 2024-02-01T19:28:34,246 Skipping link: not a file: https://pypi.org/simple/porous-media/ 2024-02-01T19:28:34,265 Given no hashes to check 1 links for project 'porous-media': discarding no candidates 2024-02-01T19:28:34,282 Collecting porous-media==0.1.5 2024-02-01T19:28:34,285 Created temporary directory: /tmp/pip-unpack-ygp4jzoj 2024-02-01T19:28:34,781 Downloading porous_media-0.1.5.tar.gz (1.1 MB) 2024-02-01T19:28:35,229 Added porous-media==0.1.5 from https://files.pythonhosted.org/packages/ff/13/4e9c4f8698177f147b15ea3a97bd35d1d6db20cb6d48e06b46b11c9402f3/porous_media-0.1.5.tar.gz to build tracker '/tmp/pip-build-tracker-zkobz2xt' 2024-02-01T19:28:35,231 Running setup.py (path:/tmp/pip-wheel-din2eymd/porous-media_09daa04b597148ddaa0a807dedf953e0/setup.py) egg_info for package porous-media 2024-02-01T19:28:35,232 Created temporary directory: /tmp/pip-pip-egg-info-hihkqwnd 2024-02-01T19:28:35,233 Preparing metadata (setup.py): started 2024-02-01T19:28:35,234 Running command python setup.py egg_info 2024-02-01T19:28:36,423 running egg_info 2024-02-01T19:28:36,424 creating /tmp/pip-pip-egg-info-hihkqwnd/porous_media.egg-info 2024-02-01T19:28:36,448 writing /tmp/pip-pip-egg-info-hihkqwnd/porous_media.egg-info/PKG-INFO 2024-02-01T19:28:36,456 writing dependency_links to /tmp/pip-pip-egg-info-hihkqwnd/porous_media.egg-info/dependency_links.txt 2024-02-01T19:28:36,461 writing requirements to /tmp/pip-pip-egg-info-hihkqwnd/porous_media.egg-info/requires.txt 2024-02-01T19:28:36,462 writing top-level names to /tmp/pip-pip-egg-info-hihkqwnd/porous_media.egg-info/top_level.txt 2024-02-01T19:28:36,464 writing manifest file '/tmp/pip-pip-egg-info-hihkqwnd/porous_media.egg-info/SOURCES.txt' 2024-02-01T19:28:36,548 reading manifest file '/tmp/pip-pip-egg-info-hihkqwnd/porous_media.egg-info/SOURCES.txt' 2024-02-01T19:28:36,549 reading manifest template 'MANIFEST.in' 2024-02-01T19:28:36,570 adding license file 'LICENSE' 2024-02-01T19:28:36,574 writing manifest file '/tmp/pip-pip-egg-info-hihkqwnd/porous_media.egg-info/SOURCES.txt' 2024-02-01T19:28:36,683 Preparing metadata (setup.py): finished with status 'done' 2024-02-01T19:28:36,687 Source in /tmp/pip-wheel-din2eymd/porous-media_09daa04b597148ddaa0a807dedf953e0 has version 0.1.5, which satisfies requirement porous-media==0.1.5 from https://files.pythonhosted.org/packages/ff/13/4e9c4f8698177f147b15ea3a97bd35d1d6db20cb6d48e06b46b11c9402f3/porous_media-0.1.5.tar.gz 2024-02-01T19:28:36,688 Removed porous-media==0.1.5 from https://files.pythonhosted.org/packages/ff/13/4e9c4f8698177f147b15ea3a97bd35d1d6db20cb6d48e06b46b11c9402f3/porous_media-0.1.5.tar.gz from build tracker '/tmp/pip-build-tracker-zkobz2xt' 2024-02-01T19:28:36,694 Created temporary directory: /tmp/pip-unpack-c6lc8qej 2024-02-01T19:28:36,695 Created temporary directory: /tmp/pip-unpack-5e389zqc 2024-02-01T19:28:36,746 Building wheels for collected packages: porous-media 2024-02-01T19:28:36,750 Created temporary directory: /tmp/pip-wheel-bzahh5_k 2024-02-01T19:28:36,750 Building wheel for porous-media (setup.py): started 2024-02-01T19:28:36,751 Destination directory: /tmp/pip-wheel-bzahh5_k 2024-02-01T19:28:36,752 Running command python setup.py bdist_wheel 2024-02-01T19:28:37,896 running bdist_wheel 2024-02-01T19:28:37,991 running build 2024-02-01T19:28:37,992 running build_py 2024-02-01T19:28:38,019 creating build 2024-02-01T19:28:38,019 creating build/lib 2024-02-01T19:28:38,020 creating build/lib/porous_media 2024-02-01T19:28:38,022 copying src/porous_media/log.py -> build/lib/porous_media 2024-02-01T19:28:38,024 copying src/porous_media/console.py -> build/lib/porous_media 2024-02-01T19:28:38,026 copying src/porous_media/__init__.py -> build/lib/porous_media 2024-02-01T19:28:38,028 creating build/lib/porous_media/febio 2024-02-01T19:28:38,029 copying src/porous_media/febio/febio_manipulation.py -> build/lib/porous_media/febio 2024-02-01T19:28:38,031 copying src/porous_media/febio/__init__.py -> build/lib/porous_media/febio 2024-02-01T19:28:38,033 creating build/lib/porous_media/visualization 2024-02-01T19:28:38,034 copying src/porous_media/visualization/image_annotation.py -> build/lib/porous_media/visualization 2024-02-01T19:28:38,036 copying src/porous_media/visualization/image_manipulation.py -> build/lib/porous_media/visualization 2024-02-01T19:28:38,038 copying src/porous_media/visualization/video.py -> build/lib/porous_media/visualization 2024-02-01T19:28:38,040 copying src/porous_media/visualization/vtu_reader.py -> build/lib/porous_media/visualization 2024-02-01T19:28:38,042 copying src/porous_media/visualization/pyvista_visualization.py -> build/lib/porous_media/visualization 2024-02-01T19:28:38,044 copying src/porous_media/visualization/__init__.py -> build/lib/porous_media/visualization 2024-02-01T19:28:38,046 copying src/porous_media/visualization/plots.py -> build/lib/porous_media/visualization 2024-02-01T19:28:38,048 creating build/lib/porous_media/analyses 2024-02-01T19:28:38,049 copying src/porous_media/analyses/__init__.py -> build/lib/porous_media/analyses 2024-02-01T19:28:38,051 copying src/porous_media/analyses/liver_variables.py -> build/lib/porous_media/analyses 2024-02-01T19:28:38,053 creating build/lib/porous_media/mesh 2024-02-01T19:28:38,054 copying src/porous_media/mesh/mesh_zonation.py -> build/lib/porous_media/mesh 2024-02-01T19:28:38,057 copying src/porous_media/mesh/__init__.py -> build/lib/porous_media/mesh 2024-02-01T19:28:38,059 copying src/porous_media/mesh/mesh_tools.py -> build/lib/porous_media/mesh 2024-02-01T19:28:38,061 creating build/lib/porous_media/data 2024-02-01T19:28:38,062 copying src/porous_media/data/xdmf_tools.py -> build/lib/porous_media/data 2024-02-01T19:28:38,065 copying src/porous_media/data/__init__.py -> build/lib/porous_media/data 2024-02-01T19:28:38,066 copying src/porous_media/data/xdmf_calculations.py -> build/lib/porous_media/data 2024-02-01T19:28:38,069 creating build/lib/porous_media/analyses/simliva 2024-02-01T19:28:38,070 copying src/porous_media/analyses/simliva/__init__.py -> build/lib/porous_media/analyses/simliva 2024-02-01T19:28:38,072 copying src/porous_media/analyses/simliva/simliva_example.py -> build/lib/porous_media/analyses/simliva 2024-02-01T19:28:38,075 creating build/lib/porous_media/analyses/examples 2024-02-01T19:28:38,076 copying src/porous_media/analyses/examples/groups.py -> build/lib/porous_media/analyses/examples 2024-02-01T19:28:38,078 copying src/porous_media/analyses/examples/__init__.py -> build/lib/porous_media/analyses/examples 2024-02-01T19:28:38,080 creating build/lib/porous_media/analyses/spt 2024-02-01T19:28:38,081 copying src/porous_media/analyses/spt/spt_data_processing.py -> build/lib/porous_media/analyses/spt 2024-02-01T19:28:38,083 copying src/porous_media/analyses/spt/spt_information.py -> build/lib/porous_media/analyses/spt 2024-02-01T19:28:38,085 copying src/porous_media/analyses/spt/__init__.py -> build/lib/porous_media/analyses/spt 2024-02-01T19:28:38,087 copying src/porous_media/analyses/spt/spt_plots_analysis.py -> build/lib/porous_media/analyses/spt 2024-02-01T19:28:38,090 copying src/porous_media/analyses/spt/spt_plots_geometry.py -> build/lib/porous_media/analyses/spt 2024-02-01T19:28:38,092 running egg_info 2024-02-01T19:28:38,147 writing src/porous_media.egg-info/PKG-INFO 2024-02-01T19:28:38,155 writing dependency_links to src/porous_media.egg-info/dependency_links.txt 2024-02-01T19:28:38,160 writing requirements to src/porous_media.egg-info/requires.txt 2024-02-01T19:28:38,161 writing top-level names to src/porous_media.egg-info/top_level.txt 2024-02-01T19:28:38,194 reading manifest file 'src/porous_media.egg-info/SOURCES.txt' 2024-02-01T19:28:38,197 reading manifest template 'MANIFEST.in' 2024-02-01T19:28:38,218 adding license file 'LICENSE' 2024-02-01T19:28:38,222 writing manifest file 'src/porous_media.egg-info/SOURCES.txt' 2024-02-01T19:28:38,224 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'porous_media.resources.images' is absent from the `packages` configuration. 2024-02-01T19:28:38,225 !! 2024-02-01T19:28:38,226 ******************************************************************************** 2024-02-01T19:28:38,226 ############################ 2024-02-01T19:28:38,227 # Package would be ignored # 2024-02-01T19:28:38,227 ############################ 2024-02-01T19:28:38,228 Python recognizes 'porous_media.resources.images' as an importable package[^1], 2024-02-01T19:28:38,229 but it is absent from setuptools' `packages` configuration. 2024-02-01T19:28:38,230 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-01T19:28:38,230 package, please make sure that 'porous_media.resources.images' is explicitly added 2024-02-01T19:28:38,231 to the `packages` configuration field. 2024-02-01T19:28:38,232 Alternatively, you can also rely on setuptools' discovery methods 2024-02-01T19:28:38,232 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-01T19:28:38,233 instead of `find_packages(...)`/`find:`). 2024-02-01T19:28:38,234 You can read more about "package discovery" on setuptools documentation page: 2024-02-01T19:28:38,235 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-01T19:28:38,236 If you don't want 'porous_media.resources.images' to be distributed and are 2024-02-01T19:28:38,236 already explicitly excluding 'porous_media.resources.images' via 2024-02-01T19:28:38,237 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-01T19:28:38,237 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-01T19:28:38,238 combination with a more fine grained `package-data` configuration. 2024-02-01T19:28:38,239 You can read more about "package data files" on setuptools documentation page: 2024-02-01T19:28:38,240 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-01T19:28:38,244 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-01T19:28:38,245 even if it does not contain any `.py` files. 2024-02-01T19:28:38,246 On the other hand, currently there is no concept of package data 2024-02-01T19:28:38,246 directory, all directories are treated like packages. 2024-02-01T19:28:38,247 ******************************************************************************** 2024-02-01T19:28:38,248 !! 2024-02-01T19:28:38,249 check.warn(importable) 2024-02-01T19:28:38,249 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'porous_media.resources.vtk.vtk_single' is absent from the `packages` configuration. 2024-02-01T19:28:38,250 !! 2024-02-01T19:28:38,251 ******************************************************************************** 2024-02-01T19:28:38,253 ############################ 2024-02-01T19:28:38,256 # Package would be ignored # 2024-02-01T19:28:38,256 ############################ 2024-02-01T19:28:38,257 Python recognizes 'porous_media.resources.vtk.vtk_single' as an importable package[^1], 2024-02-01T19:28:38,257 but it is absent from setuptools' `packages` configuration. 2024-02-01T19:28:38,258 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-01T19:28:38,259 package, please make sure that 'porous_media.resources.vtk.vtk_single' is explicitly added 2024-02-01T19:28:38,259 to the `packages` configuration field. 2024-02-01T19:28:38,260 Alternatively, you can also rely on setuptools' discovery methods 2024-02-01T19:28:38,260 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-01T19:28:38,261 instead of `find_packages(...)`/`find:`). 2024-02-01T19:28:38,264 You can read more about "package discovery" on setuptools documentation page: 2024-02-01T19:28:38,265 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-01T19:28:38,267 If you don't want 'porous_media.resources.vtk.vtk_single' to be distributed and are 2024-02-01T19:28:38,267 already explicitly excluding 'porous_media.resources.vtk.vtk_single' via 2024-02-01T19:28:38,268 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-01T19:28:38,268 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-01T19:28:38,269 combination with a more fine grained `package-data` configuration. 2024-02-01T19:28:38,272 You can read more about "package data files" on setuptools documentation page: 2024-02-01T19:28:38,274 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-01T19:28:38,276 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-01T19:28:38,276 even if it does not contain any `.py` files. 2024-02-01T19:28:38,277 On the other hand, currently there is no concept of package data 2024-02-01T19:28:38,280 directory, all directories are treated like packages. 2024-02-01T19:28:38,282 ******************************************************************************** 2024-02-01T19:28:38,284 !! 2024-02-01T19:28:38,284 check.warn(importable) 2024-02-01T19:28:38,285 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'porous_media.resources.vtk.vtk_timecourse' is absent from the `packages` configuration. 2024-02-01T19:28:38,285 !! 2024-02-01T19:28:38,286 ******************************************************************************** 2024-02-01T19:28:38,287 ############################ 2024-02-01T19:28:38,287 # Package would be ignored # 2024-02-01T19:28:38,288 ############################ 2024-02-01T19:28:38,289 Python recognizes 'porous_media.resources.vtk.vtk_timecourse' as an importable package[^1], 2024-02-01T19:28:38,289 but it is absent from setuptools' `packages` configuration. 2024-02-01T19:28:38,290 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-01T19:28:38,291 package, please make sure that 'porous_media.resources.vtk.vtk_timecourse' is explicitly added 2024-02-01T19:28:38,292 to the `packages` configuration field. 2024-02-01T19:28:38,293 Alternatively, you can also rely on setuptools' discovery methods 2024-02-01T19:28:38,294 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-01T19:28:38,294 instead of `find_packages(...)`/`find:`). 2024-02-01T19:28:38,295 You can read more about "package discovery" on setuptools documentation page: 2024-02-01T19:28:38,296 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-01T19:28:38,296 If you don't want 'porous_media.resources.vtk.vtk_timecourse' to be distributed and are 2024-02-01T19:28:38,297 already explicitly excluding 'porous_media.resources.vtk.vtk_timecourse' via 2024-02-01T19:28:38,297 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-01T19:28:38,298 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-01T19:28:38,298 combination with a more fine grained `package-data` configuration. 2024-02-01T19:28:38,300 You can read more about "package data files" on setuptools documentation page: 2024-02-01T19:28:38,314 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-01T19:28:38,316 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-01T19:28:38,318 even if it does not contain any `.py` files. 2024-02-01T19:28:38,320 On the other hand, currently there is no concept of package data 2024-02-01T19:28:38,321 directory, all directories are treated like packages. 2024-02-01T19:28:38,322 ******************************************************************************** 2024-02-01T19:28:38,323 !! 2024-02-01T19:28:38,324 check.warn(importable) 2024-02-01T19:28:38,324 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'porous_media.resources.zonation' is absent from the `packages` configuration. 2024-02-01T19:28:38,325 !! 2024-02-01T19:28:38,326 ******************************************************************************** 2024-02-01T19:28:38,327 ############################ 2024-02-01T19:28:38,327 # Package would be ignored # 2024-02-01T19:28:38,328 ############################ 2024-02-01T19:28:38,329 Python recognizes 'porous_media.resources.zonation' as an importable package[^1], 2024-02-01T19:28:38,329 but it is absent from setuptools' `packages` configuration. 2024-02-01T19:28:38,331 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-01T19:28:38,332 package, please make sure that 'porous_media.resources.zonation' is explicitly added 2024-02-01T19:28:38,333 to the `packages` configuration field. 2024-02-01T19:28:38,334 Alternatively, you can also rely on setuptools' discovery methods 2024-02-01T19:28:38,335 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-01T19:28:38,336 instead of `find_packages(...)`/`find:`). 2024-02-01T19:28:38,338 You can read more about "package discovery" on setuptools documentation page: 2024-02-01T19:28:38,339 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-01T19:28:38,340 If you don't want 'porous_media.resources.zonation' to be distributed and are 2024-02-01T19:28:38,342 already explicitly excluding 'porous_media.resources.zonation' via 2024-02-01T19:28:38,344 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-01T19:28:38,344 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-01T19:28:38,345 combination with a more fine grained `package-data` configuration. 2024-02-01T19:28:38,347 You can read more about "package data files" on setuptools documentation page: 2024-02-01T19:28:38,348 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-01T19:28:38,350 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-01T19:28:38,350 even if it does not contain any `.py` files. 2024-02-01T19:28:38,351 On the other hand, currently there is no concept of package data 2024-02-01T19:28:38,351 directory, all directories are treated like packages. 2024-02-01T19:28:38,352 ******************************************************************************** 2024-02-01T19:28:38,353 !! 2024-02-01T19:28:38,353 check.warn(importable) 2024-02-01T19:28:38,354 copying src/porous_media/py.typed -> build/lib/porous_media 2024-02-01T19:28:38,354 creating build/lib/porous_media/resources 2024-02-01T19:28:38,355 creating build/lib/porous_media/resources/images 2024-02-01T19:28:38,355 copying src/porous_media/resources/images/mesh_zonation.png -> build/lib/porous_media/resources/images 2024-02-01T19:28:38,356 creating build/lib/porous_media/resources/vtk 2024-02-01T19:28:38,356 creating build/lib/porous_media/resources/vtk/vtk_single 2024-02-01T19:28:38,357 copying src/porous_media/resources/vtk/vtk_single/lobule_zonation_pattern.t0022.vtk -> build/lib/porous_media/resources/vtk/vtk_single 2024-02-01T19:28:38,357 creating build/lib/porous_media/resources/vtk/vtk_timecourse 2024-02-01T19:28:38,358 copying src/porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0000.vtk -> build/lib/porous_media/resources/vtk/vtk_timecourse 2024-02-01T19:28:38,359 copying src/porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0008.vtk -> build/lib/porous_media/resources/vtk/vtk_timecourse 2024-02-01T19:28:38,359 copying src/porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0022.vtk -> build/lib/porous_media/resources/vtk/vtk_timecourse 2024-02-01T19:28:38,360 creating build/lib/porous_media/resources/zonation 2024-02-01T19:28:38,361 copying src/porous_media/resources/zonation/mesh_zonation.h5 -> build/lib/porous_media/resources/zonation 2024-02-01T19:28:38,361 copying src/porous_media/resources/zonation/mesh_zonation.vtk -> build/lib/porous_media/resources/zonation 2024-02-01T19:28:38,362 copying src/porous_media/resources/zonation/mesh_zonation.xdmf -> build/lib/porous_media/resources/zonation 2024-02-01T19:28:38,363 copying src/porous_media/resources/zonation/mesh_zonation_lobulus.vtk -> build/lib/porous_media/resources/zonation 2024-02-01T19:28:38,363 copying src/porous_media/data/flow_dependency.png -> build/lib/porous_media/data 2024-02-01T19:28:38,364 copying src/porous_media/analyses/spt/MII-symposium.md -> build/lib/porous_media/analyses/spt 2024-02-01T19:28:38,365 copying src/porous_media/analyses/spt/spt.md -> build/lib/porous_media/analyses/spt 2024-02-01T19:28:38,370 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-02-01T19:28:38,371 !! 2024-02-01T19:28:38,372 ******************************************************************************** 2024-02-01T19:28:38,373 Please avoid running ``setup.py`` directly. 2024-02-01T19:28:38,373 Instead, use pypa/build, pypa/installer or other 2024-02-01T19:28:38,374 standards-based tools. 2024-02-01T19:28:38,375 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-02-01T19:28:38,376 ******************************************************************************** 2024-02-01T19:28:38,377 !! 2024-02-01T19:28:38,378 self.initialize_options() 2024-02-01T19:28:38,395 installing to build/bdist.linux-armv7l/wheel 2024-02-01T19:28:38,396 running install 2024-02-01T19:28:38,420 running install_lib 2024-02-01T19:28:38,444 creating build/bdist.linux-armv7l 2024-02-01T19:28:38,445 creating build/bdist.linux-armv7l/wheel 2024-02-01T19:28:38,446 creating build/bdist.linux-armv7l/wheel/porous_media 2024-02-01T19:28:38,448 creating build/bdist.linux-armv7l/wheel/porous_media/febio 2024-02-01T19:28:38,449 copying build/lib/porous_media/febio/febio_manipulation.py -> build/bdist.linux-armv7l/wheel/porous_media/febio 2024-02-01T19:28:38,451 copying build/lib/porous_media/febio/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media/febio 2024-02-01T19:28:38,452 copying build/lib/porous_media/log.py -> build/bdist.linux-armv7l/wheel/porous_media 2024-02-01T19:28:38,454 creating build/bdist.linux-armv7l/wheel/porous_media/visualization 2024-02-01T19:28:38,455 copying build/lib/porous_media/visualization/image_annotation.py -> build/bdist.linux-armv7l/wheel/porous_media/visualization 2024-02-01T19:28:38,457 copying build/lib/porous_media/visualization/image_manipulation.py -> build/bdist.linux-armv7l/wheel/porous_media/visualization 2024-02-01T19:28:38,459 copying build/lib/porous_media/visualization/video.py -> build/bdist.linux-armv7l/wheel/porous_media/visualization 2024-02-01T19:28:38,460 copying build/lib/porous_media/visualization/vtu_reader.py -> build/bdist.linux-armv7l/wheel/porous_media/visualization 2024-02-01T19:28:38,462 copying build/lib/porous_media/visualization/pyvista_visualization.py -> build/bdist.linux-armv7l/wheel/porous_media/visualization 2024-02-01T19:28:38,464 copying build/lib/porous_media/visualization/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media/visualization 2024-02-01T19:28:38,466 copying build/lib/porous_media/visualization/plots.py -> build/bdist.linux-armv7l/wheel/porous_media/visualization 2024-02-01T19:28:38,468 creating build/bdist.linux-armv7l/wheel/porous_media/resources 2024-02-01T19:28:38,469 creating build/bdist.linux-armv7l/wheel/porous_media/resources/vtk 2024-02-01T19:28:38,470 creating build/bdist.linux-armv7l/wheel/porous_media/resources/vtk/vtk_single 2024-02-01T19:28:38,471 copying build/lib/porous_media/resources/vtk/vtk_single/lobule_zonation_pattern.t0022.vtk -> build/bdist.linux-armv7l/wheel/porous_media/resources/vtk/vtk_single 2024-02-01T19:28:38,483 creating build/bdist.linux-armv7l/wheel/porous_media/resources/vtk/vtk_timecourse 2024-02-01T19:28:38,484 copying build/lib/porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0008.vtk -> build/bdist.linux-armv7l/wheel/porous_media/resources/vtk/vtk_timecourse 2024-02-01T19:28:38,493 copying build/lib/porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0022.vtk -> build/bdist.linux-armv7l/wheel/porous_media/resources/vtk/vtk_timecourse 2024-02-01T19:28:38,502 copying build/lib/porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0000.vtk -> build/bdist.linux-armv7l/wheel/porous_media/resources/vtk/vtk_timecourse 2024-02-01T19:28:38,511 creating build/bdist.linux-armv7l/wheel/porous_media/resources/images 2024-02-01T19:28:38,512 copying build/lib/porous_media/resources/images/mesh_zonation.png -> build/bdist.linux-armv7l/wheel/porous_media/resources/images 2024-02-01T19:28:38,522 creating build/bdist.linux-armv7l/wheel/porous_media/resources/zonation 2024-02-01T19:28:38,523 copying build/lib/porous_media/resources/zonation/mesh_zonation_lobulus.vtk -> build/bdist.linux-armv7l/wheel/porous_media/resources/zonation 2024-02-01T19:28:38,535 copying build/lib/porous_media/resources/zonation/mesh_zonation.h5 -> build/bdist.linux-armv7l/wheel/porous_media/resources/zonation 2024-02-01T19:28:38,538 copying build/lib/porous_media/resources/zonation/mesh_zonation.vtk -> build/bdist.linux-armv7l/wheel/porous_media/resources/zonation 2024-02-01T19:28:38,541 copying build/lib/porous_media/resources/zonation/mesh_zonation.xdmf -> build/bdist.linux-armv7l/wheel/porous_media/resources/zonation 2024-02-01T19:28:38,543 copying build/lib/porous_media/console.py -> build/bdist.linux-armv7l/wheel/porous_media 2024-02-01T19:28:38,545 copying build/lib/porous_media/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media 2024-02-01T19:28:38,547 creating build/bdist.linux-armv7l/wheel/porous_media/analyses 2024-02-01T19:28:38,549 creating build/bdist.linux-armv7l/wheel/porous_media/analyses/simliva 2024-02-01T19:28:38,550 copying build/lib/porous_media/analyses/simliva/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses/simliva 2024-02-01T19:28:38,551 copying build/lib/porous_media/analyses/simliva/simliva_example.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses/simliva 2024-02-01T19:28:38,553 copying build/lib/porous_media/analyses/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses 2024-02-01T19:28:38,555 creating build/bdist.linux-armv7l/wheel/porous_media/analyses/examples 2024-02-01T19:28:38,556 copying build/lib/porous_media/analyses/examples/groups.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses/examples 2024-02-01T19:28:38,558 copying build/lib/porous_media/analyses/examples/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses/examples 2024-02-01T19:28:38,559 creating build/bdist.linux-armv7l/wheel/porous_media/analyses/spt 2024-02-01T19:28:38,561 copying build/lib/porous_media/analyses/spt/MII-symposium.md -> build/bdist.linux-armv7l/wheel/porous_media/analyses/spt 2024-02-01T19:28:38,562 copying build/lib/porous_media/analyses/spt/spt_data_processing.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses/spt 2024-02-01T19:28:38,564 copying build/lib/porous_media/analyses/spt/spt.md -> build/bdist.linux-armv7l/wheel/porous_media/analyses/spt 2024-02-01T19:28:38,566 copying build/lib/porous_media/analyses/spt/spt_information.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses/spt 2024-02-01T19:28:38,568 copying build/lib/porous_media/analyses/spt/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses/spt 2024-02-01T19:28:38,569 copying build/lib/porous_media/analyses/spt/spt_plots_analysis.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses/spt 2024-02-01T19:28:38,572 copying build/lib/porous_media/analyses/spt/spt_plots_geometry.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses/spt 2024-02-01T19:28:38,574 copying build/lib/porous_media/analyses/liver_variables.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses 2024-02-01T19:28:38,576 creating build/bdist.linux-armv7l/wheel/porous_media/mesh 2024-02-01T19:28:38,577 copying build/lib/porous_media/mesh/mesh_zonation.py -> build/bdist.linux-armv7l/wheel/porous_media/mesh 2024-02-01T19:28:38,580 copying build/lib/porous_media/mesh/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media/mesh 2024-02-01T19:28:38,581 copying build/lib/porous_media/mesh/mesh_tools.py -> build/bdist.linux-armv7l/wheel/porous_media/mesh 2024-02-01T19:28:38,583 copying build/lib/porous_media/py.typed -> build/bdist.linux-armv7l/wheel/porous_media 2024-02-01T19:28:38,585 creating build/bdist.linux-armv7l/wheel/porous_media/data 2024-02-01T19:28:38,586 copying build/lib/porous_media/data/xdmf_tools.py -> build/bdist.linux-armv7l/wheel/porous_media/data 2024-02-01T19:28:38,589 copying build/lib/porous_media/data/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media/data 2024-02-01T19:28:38,590 copying build/lib/porous_media/data/flow_dependency.png -> build/bdist.linux-armv7l/wheel/porous_media/data 2024-02-01T19:28:38,596 copying build/lib/porous_media/data/xdmf_calculations.py -> build/bdist.linux-armv7l/wheel/porous_media/data 2024-02-01T19:28:38,598 running install_egg_info 2024-02-01T19:28:38,630 Copying src/porous_media.egg-info to build/bdist.linux-armv7l/wheel/porous_media-0.1.5-py3.11.egg-info 2024-02-01T19:28:38,641 running install_scripts 2024-02-01T19:28:38,664 creating build/bdist.linux-armv7l/wheel/porous_media-0.1.5.dist-info/WHEEL 2024-02-01T19:28:38,666 creating '/tmp/pip-wheel-bzahh5_k/porous_media-0.1.5-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-02-01T19:28:38,668 adding 'porous_media/__init__.py' 2024-02-01T19:28:38,670 adding 'porous_media/console.py' 2024-02-01T19:28:38,671 adding 'porous_media/log.py' 2024-02-01T19:28:38,673 adding 'porous_media/py.typed' 2024-02-01T19:28:38,674 adding 'porous_media/analyses/__init__.py' 2024-02-01T19:28:38,676 adding 'porous_media/analyses/liver_variables.py' 2024-02-01T19:28:38,677 adding 'porous_media/analyses/examples/__init__.py' 2024-02-01T19:28:38,679 adding 'porous_media/analyses/examples/groups.py' 2024-02-01T19:28:38,680 adding 'porous_media/analyses/simliva/__init__.py' 2024-02-01T19:28:38,682 adding 'porous_media/analyses/simliva/simliva_example.py' 2024-02-01T19:28:38,683 adding 'porous_media/analyses/spt/MII-symposium.md' 2024-02-01T19:28:38,684 adding 'porous_media/analyses/spt/__init__.py' 2024-02-01T19:28:38,686 adding 'porous_media/analyses/spt/spt.md' 2024-02-01T19:28:38,687 adding 'porous_media/analyses/spt/spt_data_processing.py' 2024-02-01T19:28:38,688 adding 'porous_media/analyses/spt/spt_information.py' 2024-02-01T19:28:38,690 adding 'porous_media/analyses/spt/spt_plots_analysis.py' 2024-02-01T19:28:38,692 adding 'porous_media/analyses/spt/spt_plots_geometry.py' 2024-02-01T19:28:38,694 adding 'porous_media/data/__init__.py' 2024-02-01T19:28:38,718 adding 'porous_media/data/flow_dependency.png' 2024-02-01T19:28:38,721 adding 'porous_media/data/xdmf_calculations.py' 2024-02-01T19:28:38,723 adding 'porous_media/data/xdmf_tools.py' 2024-02-01T19:28:38,725 adding 'porous_media/febio/__init__.py' 2024-02-01T19:28:38,726 adding 'porous_media/febio/febio_manipulation.py' 2024-02-01T19:28:38,728 adding 'porous_media/mesh/__init__.py' 2024-02-01T19:28:38,729 adding 'porous_media/mesh/mesh_tools.py' 2024-02-01T19:28:38,731 adding 'porous_media/mesh/mesh_zonation.py' 2024-02-01T19:28:38,771 adding 'porous_media/resources/images/mesh_zonation.png' 2024-02-01T19:28:38,857 adding 'porous_media/resources/vtk/vtk_single/lobule_zonation_pattern.t0022.vtk' 2024-02-01T19:28:38,873 adding 'porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0000.vtk' 2024-02-01T19:28:38,963 adding 'porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0008.vtk' 2024-02-01T19:28:39,050 adding 'porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0022.vtk' 2024-02-01T19:28:39,056 adding 'porous_media/resources/zonation/mesh_zonation.h5' 2024-02-01T19:28:39,065 adding 'porous_media/resources/zonation/mesh_zonation.vtk' 2024-02-01T19:28:39,067 adding 'porous_media/resources/zonation/mesh_zonation.xdmf' 2024-02-01T19:28:39,162 adding 'porous_media/resources/zonation/mesh_zonation_lobulus.vtk' 2024-02-01T19:28:39,167 adding 'porous_media/visualization/__init__.py' 2024-02-01T19:28:39,168 adding 'porous_media/visualization/image_annotation.py' 2024-02-01T19:28:39,169 adding 'porous_media/visualization/image_manipulation.py' 2024-02-01T19:28:39,171 adding 'porous_media/visualization/plots.py' 2024-02-01T19:28:39,173 adding 'porous_media/visualization/pyvista_visualization.py' 2024-02-01T19:28:39,174 adding 'porous_media/visualization/video.py' 2024-02-01T19:28:39,175 adding 'porous_media/visualization/vtu_reader.py' 2024-02-01T19:28:39,178 adding 'porous_media-0.1.5.dist-info/LICENSE' 2024-02-01T19:28:39,179 adding 'porous_media-0.1.5.dist-info/METADATA' 2024-02-01T19:28:39,181 adding 'porous_media-0.1.5.dist-info/WHEEL' 2024-02-01T19:28:39,181 adding 'porous_media-0.1.5.dist-info/top_level.txt' 2024-02-01T19:28:39,182 adding 'porous_media-0.1.5.dist-info/zip-safe' 2024-02-01T19:28:39,184 adding 'porous_media-0.1.5.dist-info/RECORD' 2024-02-01T19:28:39,198 removing build/bdist.linux-armv7l/wheel 2024-02-01T19:28:39,327 Building wheel for porous-media (setup.py): finished with status 'done' 2024-02-01T19:28:39,341 Created wheel for porous-media: filename=porous_media-0.1.5-py2.py3-none-any.whl size=1131008 sha256=cbeead35bacddf92c5d1b46faa193fe90ce1d29664223c85861d02b0e5826aa1 2024-02-01T19:28:39,342 Stored in directory: /tmp/pip-ephem-wheel-cache-9k471cdl/wheels/cf/e0/55/a538b37a996f78267f0eb521eceb2f824e24857c489e510aba 2024-02-01T19:28:39,357 Successfully built porous-media 2024-02-01T19:28:39,398 Removed build tracker: '/tmp/pip-build-tracker-zkobz2xt'