2024-02-01T20:29:43,095 Created temporary directory: /tmp/pip-build-tracker-yp68ovx1 2024-02-01T20:29:43,096 Initialized build tracking at /tmp/pip-build-tracker-yp68ovx1 2024-02-01T20:29:43,097 Created build tracker: /tmp/pip-build-tracker-yp68ovx1 2024-02-01T20:29:43,097 Entered build tracker: /tmp/pip-build-tracker-yp68ovx1 2024-02-01T20:29:43,098 Created temporary directory: /tmp/pip-wheel-334z3qqs 2024-02-01T20:29:43,102 Created temporary directory: /tmp/pip-ephem-wheel-cache-dcbblsvg 2024-02-01T20:29:43,124 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-02-01T20:29:43,128 2 location(s) to search for versions of porous-media: 2024-02-01T20:29:43,128 * https://pypi.org/simple/porous-media/ 2024-02-01T20:29:43,128 * https://www.piwheels.org/simple/porous-media/ 2024-02-01T20:29:43,129 Fetching project page and analyzing links: https://pypi.org/simple/porous-media/ 2024-02-01T20:29:43,129 Getting page https://pypi.org/simple/porous-media/ 2024-02-01T20:29:43,131 Found index url https://pypi.org/simple/ 2024-02-01T20:29:43,349 Fetched page https://pypi.org/simple/porous-media/ as application/vnd.pypi.simple.v1+json 2024-02-01T20:29:43,353 Skipping link: No binaries permitted for porous-media: https://files.pythonhosted.org/packages/8d/aa/23156715fa495249b2758769e4fa2567e7760d8163a52093c07b32cab1f7/porous_media-0.1.0-py2.py3-none-any.whl (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9) 2024-02-01T20:29:43,354 Found link https://files.pythonhosted.org/packages/03/ae/895e5a752d9520e0cab951bb55c0cf72a1b030407edf4f68df420e091dbf/porous_media-0.1.0.tar.gz (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9), version: 0.1.0 2024-02-01T20:29:43,355 Skipping link: No binaries permitted for porous-media: https://files.pythonhosted.org/packages/7a/2b/68bf0447869b0e05a5d80d56fa7e51b643a0361dea2fbeda73da2d2ea5e6/porous_media-0.1.1-py2.py3-none-any.whl (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9) 2024-02-01T20:29:43,356 Found link https://files.pythonhosted.org/packages/1c/19/afaf97f13a4c6782bfb31883c7bfe177c7ec44e00708fac2c72e570d30b7/porous_media-0.1.1.tar.gz (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9), version: 0.1.1 2024-02-01T20:29:43,357 Skipping link: No binaries permitted for porous-media: https://files.pythonhosted.org/packages/4e/7f/dd78526e28ad2a7aaef881c6cde3d259c9a6878e5119f7bea051dba2b901/porous_media-0.1.2-py2.py3-none-any.whl (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9) 2024-02-01T20:29:43,357 Found link https://files.pythonhosted.org/packages/c6/10/1fb8da0ed29a49642f003f479d058d99b17a25fb39718c8059447e81f19b/porous_media-0.1.2.tar.gz (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9), version: 0.1.2 2024-02-01T20:29:43,358 Skipping link: No binaries permitted for porous-media: https://files.pythonhosted.org/packages/09/d1/d05f573f6a568b9e5a5b8c312f82b13987a1c09883b2310b71a554660ed2/porous_media-0.1.3-py2.py3-none-any.whl (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9) 2024-02-01T20:29:43,359 Found link https://files.pythonhosted.org/packages/12/37/9300f1927b7193000a0808c54e609207a5b6e48a7cb6dcadb727fd0d5eab/porous_media-0.1.3.tar.gz (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9), version: 0.1.3 2024-02-01T20:29:43,360 Skipping link: No binaries permitted for porous-media: https://files.pythonhosted.org/packages/28/5b/52c6fa3fed13747d0eb33d9adfbb1bc241529e4d065d527de90e9ed291af/porous_media-0.1.5-py2.py3-none-any.whl (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9) 2024-02-01T20:29:43,361 Found link https://files.pythonhosted.org/packages/ff/13/4e9c4f8698177f147b15ea3a97bd35d1d6db20cb6d48e06b46b11c9402f3/porous_media-0.1.5.tar.gz (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9), version: 0.1.5 2024-02-01T20:29:43,362 Skipping link: No binaries permitted for porous-media: https://files.pythonhosted.org/packages/f3/4d/a1bccfd58733301094ad6f8dda871997fe8f6fa33b437f3e18bde049ad1e/porous_media-0.1.6-py2.py3-none-any.whl (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9) 2024-02-01T20:29:43,363 Found link https://files.pythonhosted.org/packages/b6/7b/8bf2e6c5dd5fd149eba27c01484a3ce7180febd4d0f60184e1ab0bbd8ef8/porous_media-0.1.6.tar.gz (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9), version: 0.1.6 2024-02-01T20:29:43,364 Skipping link: No binaries permitted for porous-media: https://files.pythonhosted.org/packages/be/51/88176485305d519a2c7d26aac9d69b2694c3cc0a0b5a91f8779abcee834c/porous_media-0.1.7-py2.py3-none-any.whl (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9) 2024-02-01T20:29:43,364 Found link https://files.pythonhosted.org/packages/38/7e/f03709885fafe7c9713184fbfbf46ce66348af0aea2347a4b201d20e9ae5/porous_media-0.1.7.tar.gz (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9), version: 0.1.7 2024-02-01T20:29:43,365 Skipping link: No binaries permitted for porous-media: https://files.pythonhosted.org/packages/b2/c8/7626fa194761ee91ddbd4e9ba2a00a1d1a01724773d0013033f9eb0d0d47/porous_media-0.2.0-py2.py3-none-any.whl (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9) 2024-02-01T20:29:43,366 Found link https://files.pythonhosted.org/packages/82/56/74f40b37724413a4b7e64ab051e0f3da1379115b3714c21f44db182532ca/porous_media-0.2.0.tar.gz (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9), version: 0.2.0 2024-02-01T20:29:43,366 Skipping link: No binaries permitted for porous-media: https://files.pythonhosted.org/packages/8f/fd/45c772bd507140db766055597d18e33bd135d8726829838189c76140afe7/porous_media-0.2.1-py2.py3-none-any.whl (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9) 2024-02-01T20:29:43,367 Found link https://files.pythonhosted.org/packages/4a/0e/96cc5aca564110ec968da13044a9ef7af04f6d1eb1ab0674f046111ace2b/porous_media-0.2.1.tar.gz (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9), version: 0.2.1 2024-02-01T20:29:43,368 Fetching project page and analyzing links: https://www.piwheels.org/simple/porous-media/ 2024-02-01T20:29:43,369 Getting page https://www.piwheels.org/simple/porous-media/ 2024-02-01T20:29:43,370 Found index url https://www.piwheels.org/simple/ 2024-02-01T20:29:43,532 Fetched page https://www.piwheels.org/simple/porous-media/ as text/html 2024-02-01T20:29:43,535 Skipping link: No binaries permitted for porous-media: https://www.piwheels.org/simple/porous-media/porous_media-0.1.5-py2.py3-none-any.whl#sha256=cbeead35bacddf92c5d1b46faa193fe90ce1d29664223c85861d02b0e5826aa1 (from https://www.piwheels.org/simple/porous-media/) (requires-python:>=3.9) 2024-02-01T20:29:43,535 Skipping link: No binaries permitted for porous-media: https://www.piwheels.org/simple/porous-media/porous_media-0.1.3-py2.py3-none-any.whl#sha256=da500be3d674cd26bb4400cda802088fd4e1361080a4be1a2e2f525bd050aec3 (from https://www.piwheels.org/simple/porous-media/) (requires-python:>=3.9) 2024-02-01T20:29:43,536 Skipping link: No binaries permitted for porous-media: https://www.piwheels.org/simple/porous-media/porous_media-0.1.2-py2.py3-none-any.whl#sha256=2e11acfaa8901230a1cbff1cec7bb5c9ad8d629684ba176b9a36ff622fdee90b (from https://www.piwheels.org/simple/porous-media/) (requires-python:>=3.9) 2024-02-01T20:29:43,537 Skipping link: No binaries permitted for porous-media: https://www.piwheels.org/simple/porous-media/porous_media-0.1.1-py2.py3-none-any.whl#sha256=73590dad04a9e67fda010bcf97fe37b17fd0f4c3403cf4e475f9a2c3c2330626 (from https://www.piwheels.org/simple/porous-media/) (requires-python:>=3.9) 2024-02-01T20:29:43,537 Skipping link: No binaries permitted for porous-media: https://www.piwheels.org/simple/porous-media/porous_media-0.1.0-py2.py3-none-any.whl#sha256=92ec168e839a0e69eacf0b16c74c0afc9240778d9298a93c919a19459c34dea0 (from https://www.piwheels.org/simple/porous-media/) (requires-python:>=3.9) 2024-02-01T20:29:43,538 Skipping link: not a file: https://www.piwheels.org/simple/porous-media/ 2024-02-01T20:29:43,538 Skipping link: not a file: https://pypi.org/simple/porous-media/ 2024-02-01T20:29:43,558 Given no hashes to check 1 links for project 'porous-media': discarding no candidates 2024-02-01T20:29:43,576 Collecting porous-media==0.1.6 2024-02-01T20:29:43,579 Created temporary directory: /tmp/pip-unpack-k8a9wibd 2024-02-01T20:29:43,715 Downloading porous_media-0.1.6.tar.gz (1.1 MB) 2024-02-01T20:29:44,058 Added porous-media==0.1.6 from https://files.pythonhosted.org/packages/b6/7b/8bf2e6c5dd5fd149eba27c01484a3ce7180febd4d0f60184e1ab0bbd8ef8/porous_media-0.1.6.tar.gz to build tracker '/tmp/pip-build-tracker-yp68ovx1' 2024-02-01T20:29:44,060 Running setup.py (path:/tmp/pip-wheel-334z3qqs/porous-media_069abb8380e84a698d260c5abc1257d9/setup.py) egg_info for package porous-media 2024-02-01T20:29:44,061 Created temporary directory: /tmp/pip-pip-egg-info-ofbdoqbd 2024-02-01T20:29:44,061 Preparing metadata (setup.py): started 2024-02-01T20:29:44,062 Running command python setup.py egg_info 2024-02-01T20:29:45,209 running egg_info 2024-02-01T20:29:45,211 creating /tmp/pip-pip-egg-info-ofbdoqbd/porous_media.egg-info 2024-02-01T20:29:45,234 writing /tmp/pip-pip-egg-info-ofbdoqbd/porous_media.egg-info/PKG-INFO 2024-02-01T20:29:45,242 writing dependency_links to /tmp/pip-pip-egg-info-ofbdoqbd/porous_media.egg-info/dependency_links.txt 2024-02-01T20:29:45,247 writing requirements to /tmp/pip-pip-egg-info-ofbdoqbd/porous_media.egg-info/requires.txt 2024-02-01T20:29:45,248 writing top-level names to /tmp/pip-pip-egg-info-ofbdoqbd/porous_media.egg-info/top_level.txt 2024-02-01T20:29:45,249 writing manifest file '/tmp/pip-pip-egg-info-ofbdoqbd/porous_media.egg-info/SOURCES.txt' 2024-02-01T20:29:45,332 reading manifest file '/tmp/pip-pip-egg-info-ofbdoqbd/porous_media.egg-info/SOURCES.txt' 2024-02-01T20:29:45,333 reading manifest template 'MANIFEST.in' 2024-02-01T20:29:45,355 adding license file 'LICENSE' 2024-02-01T20:29:45,358 writing manifest file '/tmp/pip-pip-egg-info-ofbdoqbd/porous_media.egg-info/SOURCES.txt' 2024-02-01T20:29:45,467 Preparing metadata (setup.py): finished with status 'done' 2024-02-01T20:29:45,471 Source in /tmp/pip-wheel-334z3qqs/porous-media_069abb8380e84a698d260c5abc1257d9 has version 0.1.6, which satisfies requirement porous-media==0.1.6 from https://files.pythonhosted.org/packages/b6/7b/8bf2e6c5dd5fd149eba27c01484a3ce7180febd4d0f60184e1ab0bbd8ef8/porous_media-0.1.6.tar.gz 2024-02-01T20:29:45,472 Removed porous-media==0.1.6 from https://files.pythonhosted.org/packages/b6/7b/8bf2e6c5dd5fd149eba27c01484a3ce7180febd4d0f60184e1ab0bbd8ef8/porous_media-0.1.6.tar.gz from build tracker '/tmp/pip-build-tracker-yp68ovx1' 2024-02-01T20:29:45,478 Created temporary directory: /tmp/pip-unpack-ans7jc8e 2024-02-01T20:29:45,479 Created temporary directory: /tmp/pip-unpack-a3bc21mp 2024-02-01T20:29:45,530 Building wheels for collected packages: porous-media 2024-02-01T20:29:45,534 Created temporary directory: /tmp/pip-wheel-323umson 2024-02-01T20:29:45,534 Building wheel for porous-media (setup.py): started 2024-02-01T20:29:45,536 Destination directory: /tmp/pip-wheel-323umson 2024-02-01T20:29:45,536 Running command python setup.py bdist_wheel 2024-02-01T20:29:46,686 running bdist_wheel 2024-02-01T20:29:46,780 running build 2024-02-01T20:29:46,781 running build_py 2024-02-01T20:29:46,807 creating build 2024-02-01T20:29:46,808 creating build/lib 2024-02-01T20:29:46,808 creating build/lib/porous_media 2024-02-01T20:29:46,809 copying src/porous_media/log.py -> build/lib/porous_media 2024-02-01T20:29:46,811 copying src/porous_media/console.py -> build/lib/porous_media 2024-02-01T20:29:46,813 copying src/porous_media/__init__.py -> build/lib/porous_media 2024-02-01T20:29:46,815 creating build/lib/porous_media/data 2024-02-01T20:29:46,816 copying src/porous_media/data/xdmf_calculations.py -> build/lib/porous_media/data 2024-02-01T20:29:46,819 copying src/porous_media/data/xdmf_tools.py -> build/lib/porous_media/data 2024-02-01T20:29:46,821 copying src/porous_media/data/__init__.py -> build/lib/porous_media/data 2024-02-01T20:29:46,823 creating build/lib/porous_media/analyses 2024-02-01T20:29:46,824 copying src/porous_media/analyses/liver_variables.py -> build/lib/porous_media/analyses 2024-02-01T20:29:46,826 copying src/porous_media/analyses/__init__.py -> build/lib/porous_media/analyses 2024-02-01T20:29:46,828 creating build/lib/porous_media/visualization 2024-02-01T20:29:46,829 copying src/porous_media/visualization/video.py -> build/lib/porous_media/visualization 2024-02-01T20:29:46,831 copying src/porous_media/visualization/image_manipulation.py -> build/lib/porous_media/visualization 2024-02-01T20:29:46,832 copying src/porous_media/visualization/pyvista_visualization.py -> build/lib/porous_media/visualization 2024-02-01T20:29:46,835 copying src/porous_media/visualization/plots.py -> build/lib/porous_media/visualization 2024-02-01T20:29:46,836 copying src/porous_media/visualization/vtu_reader.py -> build/lib/porous_media/visualization 2024-02-01T20:29:46,838 copying src/porous_media/visualization/image_annotation.py -> build/lib/porous_media/visualization 2024-02-01T20:29:46,840 copying src/porous_media/visualization/__init__.py -> build/lib/porous_media/visualization 2024-02-01T20:29:46,841 creating build/lib/porous_media/febio 2024-02-01T20:29:46,842 copying src/porous_media/febio/__init__.py -> build/lib/porous_media/febio 2024-02-01T20:29:46,844 copying src/porous_media/febio/febio_manipulation.py -> build/lib/porous_media/febio 2024-02-01T20:29:46,846 creating build/lib/porous_media/mesh 2024-02-01T20:29:46,847 copying src/porous_media/mesh/mesh_tools.py -> build/lib/porous_media/mesh 2024-02-01T20:29:46,849 copying src/porous_media/mesh/mesh_zonation.py -> build/lib/porous_media/mesh 2024-02-01T20:29:46,851 copying src/porous_media/mesh/__init__.py -> build/lib/porous_media/mesh 2024-02-01T20:29:46,853 creating build/lib/porous_media/analyses/spt 2024-02-01T20:29:46,854 copying src/porous_media/analyses/spt/spt_plots_analysis.py -> build/lib/porous_media/analyses/spt 2024-02-01T20:29:46,856 copying src/porous_media/analyses/spt/spt_plots_geometry.py -> build/lib/porous_media/analyses/spt 2024-02-01T20:29:46,859 copying src/porous_media/analyses/spt/spt_data_processing.py -> build/lib/porous_media/analyses/spt 2024-02-01T20:29:46,860 copying src/porous_media/analyses/spt/__init__.py -> build/lib/porous_media/analyses/spt 2024-02-01T20:29:46,862 copying src/porous_media/analyses/spt/spt_information.py -> build/lib/porous_media/analyses/spt 2024-02-01T20:29:46,864 creating build/lib/porous_media/analyses/examples 2024-02-01T20:29:46,865 copying src/porous_media/analyses/examples/groups.py -> build/lib/porous_media/analyses/examples 2024-02-01T20:29:46,867 copying src/porous_media/analyses/examples/__init__.py -> build/lib/porous_media/analyses/examples 2024-02-01T20:29:46,869 creating build/lib/porous_media/analyses/simliva 2024-02-01T20:29:46,870 copying src/porous_media/analyses/simliva/simliva_example.py -> build/lib/porous_media/analyses/simliva 2024-02-01T20:29:46,872 copying src/porous_media/analyses/simliva/__init__.py -> build/lib/porous_media/analyses/simliva 2024-02-01T20:29:46,873 running egg_info 2024-02-01T20:29:46,927 writing src/porous_media.egg-info/PKG-INFO 2024-02-01T20:29:46,935 writing dependency_links to src/porous_media.egg-info/dependency_links.txt 2024-02-01T20:29:46,940 writing requirements to src/porous_media.egg-info/requires.txt 2024-02-01T20:29:46,941 writing top-level names to src/porous_media.egg-info/top_level.txt 2024-02-01T20:29:46,973 reading manifest file 'src/porous_media.egg-info/SOURCES.txt' 2024-02-01T20:29:46,976 reading manifest template 'MANIFEST.in' 2024-02-01T20:29:46,995 adding license file 'LICENSE' 2024-02-01T20:29:46,999 writing manifest file 'src/porous_media.egg-info/SOURCES.txt' 2024-02-01T20:29:47,002 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'porous_media.resources.images' is absent from the `packages` configuration. 2024-02-01T20:29:47,003 !! 2024-02-01T20:29:47,004 ******************************************************************************** 2024-02-01T20:29:47,004 ############################ 2024-02-01T20:29:47,005 # Package would be ignored # 2024-02-01T20:29:47,005 ############################ 2024-02-01T20:29:47,006 Python recognizes 'porous_media.resources.images' as an importable package[^1], 2024-02-01T20:29:47,006 but it is absent from setuptools' `packages` configuration. 2024-02-01T20:29:47,007 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-01T20:29:47,007 package, please make sure that 'porous_media.resources.images' is explicitly added 2024-02-01T20:29:47,008 to the `packages` configuration field. 2024-02-01T20:29:47,009 Alternatively, you can also rely on setuptools' discovery methods 2024-02-01T20:29:47,009 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-01T20:29:47,009 instead of `find_packages(...)`/`find:`). 2024-02-01T20:29:47,010 You can read more about "package discovery" on setuptools documentation page: 2024-02-01T20:29:47,011 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-01T20:29:47,012 If you don't want 'porous_media.resources.images' to be distributed and are 2024-02-01T20:29:47,012 already explicitly excluding 'porous_media.resources.images' via 2024-02-01T20:29:47,013 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-01T20:29:47,013 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-01T20:29:47,014 combination with a more fine grained `package-data` configuration. 2024-02-01T20:29:47,015 You can read more about "package data files" on setuptools documentation page: 2024-02-01T20:29:47,016 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-01T20:29:47,018 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-01T20:29:47,019 even if it does not contain any `.py` files. 2024-02-01T20:29:47,021 On the other hand, currently there is no concept of package data 2024-02-01T20:29:47,022 directory, all directories are treated like packages. 2024-02-01T20:29:47,022 ******************************************************************************** 2024-02-01T20:29:47,023 !! 2024-02-01T20:29:47,024 check.warn(importable) 2024-02-01T20:29:47,024 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'porous_media.resources.vtk.vtk_single' is absent from the `packages` configuration. 2024-02-01T20:29:47,025 !! 2024-02-01T20:29:47,026 ******************************************************************************** 2024-02-01T20:29:47,026 ############################ 2024-02-01T20:29:47,027 # Package would be ignored # 2024-02-01T20:29:47,027 ############################ 2024-02-01T20:29:47,028 Python recognizes 'porous_media.resources.vtk.vtk_single' as an importable package[^1], 2024-02-01T20:29:47,029 but it is absent from setuptools' `packages` configuration. 2024-02-01T20:29:47,034 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-01T20:29:47,034 package, please make sure that 'porous_media.resources.vtk.vtk_single' is explicitly added 2024-02-01T20:29:47,035 to the `packages` configuration field. 2024-02-01T20:29:47,036 Alternatively, you can also rely on setuptools' discovery methods 2024-02-01T20:29:47,036 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-01T20:29:47,037 instead of `find_packages(...)`/`find:`). 2024-02-01T20:29:47,038 You can read more about "package discovery" on setuptools documentation page: 2024-02-01T20:29:47,040 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-01T20:29:47,042 If you don't want 'porous_media.resources.vtk.vtk_single' to be distributed and are 2024-02-01T20:29:47,042 already explicitly excluding 'porous_media.resources.vtk.vtk_single' via 2024-02-01T20:29:47,044 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-01T20:29:47,044 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-01T20:29:47,045 combination with a more fine grained `package-data` configuration. 2024-02-01T20:29:47,052 You can read more about "package data files" on setuptools documentation page: 2024-02-01T20:29:47,052 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-01T20:29:47,060 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-01T20:29:47,063 even if it does not contain any `.py` files. 2024-02-01T20:29:47,063 On the other hand, currently there is no concept of package data 2024-02-01T20:29:47,064 directory, all directories are treated like packages. 2024-02-01T20:29:47,065 ******************************************************************************** 2024-02-01T20:29:47,066 !! 2024-02-01T20:29:47,066 check.warn(importable) 2024-02-01T20:29:47,068 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'porous_media.resources.vtk.vtk_timecourse' is absent from the `packages` configuration. 2024-02-01T20:29:47,068 !! 2024-02-01T20:29:47,070 ******************************************************************************** 2024-02-01T20:29:47,071 ############################ 2024-02-01T20:29:47,072 # Package would be ignored # 2024-02-01T20:29:47,072 ############################ 2024-02-01T20:29:47,073 Python recognizes 'porous_media.resources.vtk.vtk_timecourse' as an importable package[^1], 2024-02-01T20:29:47,073 but it is absent from setuptools' `packages` configuration. 2024-02-01T20:29:47,074 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-01T20:29:47,075 package, please make sure that 'porous_media.resources.vtk.vtk_timecourse' is explicitly added 2024-02-01T20:29:47,075 to the `packages` configuration field. 2024-02-01T20:29:47,076 Alternatively, you can also rely on setuptools' discovery methods 2024-02-01T20:29:47,076 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-01T20:29:47,077 instead of `find_packages(...)`/`find:`). 2024-02-01T20:29:47,078 You can read more about "package discovery" on setuptools documentation page: 2024-02-01T20:29:47,080 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-01T20:29:47,084 If you don't want 'porous_media.resources.vtk.vtk_timecourse' to be distributed and are 2024-02-01T20:29:47,085 already explicitly excluding 'porous_media.resources.vtk.vtk_timecourse' via 2024-02-01T20:29:47,085 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-01T20:29:47,086 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-01T20:29:47,086 combination with a more fine grained `package-data` configuration. 2024-02-01T20:29:47,087 You can read more about "package data files" on setuptools documentation page: 2024-02-01T20:29:47,088 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-01T20:29:47,091 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-01T20:29:47,092 even if it does not contain any `.py` files. 2024-02-01T20:29:47,092 On the other hand, currently there is no concept of package data 2024-02-01T20:29:47,093 directory, all directories are treated like packages. 2024-02-01T20:29:47,094 ******************************************************************************** 2024-02-01T20:29:47,094 !! 2024-02-01T20:29:47,095 check.warn(importable) 2024-02-01T20:29:47,095 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'porous_media.resources.zonation' is absent from the `packages` configuration. 2024-02-01T20:29:47,096 !! 2024-02-01T20:29:47,096 ******************************************************************************** 2024-02-01T20:29:47,097 ############################ 2024-02-01T20:29:47,097 # Package would be ignored # 2024-02-01T20:29:47,098 ############################ 2024-02-01T20:29:47,098 Python recognizes 'porous_media.resources.zonation' as an importable package[^1], 2024-02-01T20:29:47,098 but it is absent from setuptools' `packages` configuration. 2024-02-01T20:29:47,099 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-01T20:29:47,100 package, please make sure that 'porous_media.resources.zonation' is explicitly added 2024-02-01T20:29:47,100 to the `packages` configuration field. 2024-02-01T20:29:47,101 Alternatively, you can also rely on setuptools' discovery methods 2024-02-01T20:29:47,101 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-01T20:29:47,102 instead of `find_packages(...)`/`find:`). 2024-02-01T20:29:47,103 You can read more about "package discovery" on setuptools documentation page: 2024-02-01T20:29:47,104 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-01T20:29:47,105 If you don't want 'porous_media.resources.zonation' to be distributed and are 2024-02-01T20:29:47,105 already explicitly excluding 'porous_media.resources.zonation' via 2024-02-01T20:29:47,106 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-01T20:29:47,106 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-01T20:29:47,107 combination with a more fine grained `package-data` configuration. 2024-02-01T20:29:47,108 You can read more about "package data files" on setuptools documentation page: 2024-02-01T20:29:47,109 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-01T20:29:47,111 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-01T20:29:47,111 even if it does not contain any `.py` files. 2024-02-01T20:29:47,112 On the other hand, currently there is no concept of package data 2024-02-01T20:29:47,112 directory, all directories are treated like packages. 2024-02-01T20:29:47,113 ******************************************************************************** 2024-02-01T20:29:47,114 !! 2024-02-01T20:29:47,115 check.warn(importable) 2024-02-01T20:29:47,115 copying src/porous_media/py.typed -> build/lib/porous_media 2024-02-01T20:29:47,116 creating build/lib/porous_media/resources 2024-02-01T20:29:47,116 creating build/lib/porous_media/resources/images 2024-02-01T20:29:47,117 copying src/porous_media/resources/images/mesh_zonation.png -> build/lib/porous_media/resources/images 2024-02-01T20:29:47,117 creating build/lib/porous_media/resources/vtk 2024-02-01T20:29:47,118 creating build/lib/porous_media/resources/vtk/vtk_single 2024-02-01T20:29:47,119 copying src/porous_media/resources/vtk/vtk_single/lobule_zonation_pattern.t0022.vtk -> build/lib/porous_media/resources/vtk/vtk_single 2024-02-01T20:29:47,119 creating build/lib/porous_media/resources/vtk/vtk_timecourse 2024-02-01T20:29:47,120 copying src/porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0000.vtk -> build/lib/porous_media/resources/vtk/vtk_timecourse 2024-02-01T20:29:47,121 copying src/porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0008.vtk -> build/lib/porous_media/resources/vtk/vtk_timecourse 2024-02-01T20:29:47,121 copying src/porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0022.vtk -> build/lib/porous_media/resources/vtk/vtk_timecourse 2024-02-01T20:29:47,122 creating build/lib/porous_media/resources/zonation 2024-02-01T20:29:47,122 copying src/porous_media/resources/zonation/mesh_zonation.h5 -> build/lib/porous_media/resources/zonation 2024-02-01T20:29:47,123 copying src/porous_media/resources/zonation/mesh_zonation.vtk -> build/lib/porous_media/resources/zonation 2024-02-01T20:29:47,123 copying src/porous_media/resources/zonation/mesh_zonation.xdmf -> build/lib/porous_media/resources/zonation 2024-02-01T20:29:47,124 copying src/porous_media/resources/zonation/mesh_zonation_lobulus.vtk -> build/lib/porous_media/resources/zonation 2024-02-01T20:29:47,124 copying src/porous_media/data/flow_dependency.png -> build/lib/porous_media/data 2024-02-01T20:29:47,124 copying src/porous_media/analyses/spt/MII-symposium.md -> build/lib/porous_media/analyses/spt 2024-02-01T20:29:47,125 copying src/porous_media/analyses/spt/spt.md -> build/lib/porous_media/analyses/spt 2024-02-01T20:29:47,128 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-02-01T20:29:47,129 !! 2024-02-01T20:29:47,130 ******************************************************************************** 2024-02-01T20:29:47,130 Please avoid running ``setup.py`` directly. 2024-02-01T20:29:47,131 Instead, use pypa/build, pypa/installer or other 2024-02-01T20:29:47,131 standards-based tools. 2024-02-01T20:29:47,132 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-02-01T20:29:47,133 ******************************************************************************** 2024-02-01T20:29:47,134 !! 2024-02-01T20:29:47,134 self.initialize_options() 2024-02-01T20:29:47,152 installing to build/bdist.linux-armv7l/wheel 2024-02-01T20:29:47,153 running install 2024-02-01T20:29:47,176 running install_lib 2024-02-01T20:29:47,200 creating build/bdist.linux-armv7l 2024-02-01T20:29:47,200 creating build/bdist.linux-armv7l/wheel 2024-02-01T20:29:47,202 creating build/bdist.linux-armv7l/wheel/porous_media 2024-02-01T20:29:47,203 creating build/bdist.linux-armv7l/wheel/porous_media/data 2024-02-01T20:29:47,204 copying build/lib/porous_media/data/flow_dependency.png -> build/bdist.linux-armv7l/wheel/porous_media/data 2024-02-01T20:29:47,209 copying build/lib/porous_media/data/xdmf_calculations.py -> build/bdist.linux-armv7l/wheel/porous_media/data 2024-02-01T20:29:47,211 copying build/lib/porous_media/data/xdmf_tools.py -> build/bdist.linux-armv7l/wheel/porous_media/data 2024-02-01T20:29:47,213 copying build/lib/porous_media/data/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media/data 2024-02-01T20:29:47,215 copying build/lib/porous_media/py.typed -> build/bdist.linux-armv7l/wheel/porous_media 2024-02-01T20:29:47,217 creating build/bdist.linux-armv7l/wheel/porous_media/resources 2024-02-01T20:29:47,218 creating build/bdist.linux-armv7l/wheel/porous_media/resources/images 2024-02-01T20:29:47,219 copying build/lib/porous_media/resources/images/mesh_zonation.png -> build/bdist.linux-armv7l/wheel/porous_media/resources/images 2024-02-01T20:29:47,227 creating build/bdist.linux-armv7l/wheel/porous_media/resources/vtk 2024-02-01T20:29:47,228 creating build/bdist.linux-armv7l/wheel/porous_media/resources/vtk/vtk_timecourse 2024-02-01T20:29:47,229 copying build/lib/porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0008.vtk -> build/bdist.linux-armv7l/wheel/porous_media/resources/vtk/vtk_timecourse 2024-02-01T20:29:47,237 copying build/lib/porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0022.vtk -> build/bdist.linux-armv7l/wheel/porous_media/resources/vtk/vtk_timecourse 2024-02-01T20:29:47,246 copying build/lib/porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0000.vtk -> build/bdist.linux-armv7l/wheel/porous_media/resources/vtk/vtk_timecourse 2024-02-01T20:29:47,251 creating build/bdist.linux-armv7l/wheel/porous_media/resources/vtk/vtk_single 2024-02-01T20:29:47,252 copying build/lib/porous_media/resources/vtk/vtk_single/lobule_zonation_pattern.t0022.vtk -> build/bdist.linux-armv7l/wheel/porous_media/resources/vtk/vtk_single 2024-02-01T20:29:47,261 creating build/bdist.linux-armv7l/wheel/porous_media/resources/zonation 2024-02-01T20:29:47,262 copying build/lib/porous_media/resources/zonation/mesh_zonation.xdmf -> build/bdist.linux-armv7l/wheel/porous_media/resources/zonation 2024-02-01T20:29:47,264 copying build/lib/porous_media/resources/zonation/mesh_zonation_lobulus.vtk -> build/bdist.linux-armv7l/wheel/porous_media/resources/zonation 2024-02-01T20:29:47,273 copying build/lib/porous_media/resources/zonation/mesh_zonation.h5 -> build/bdist.linux-armv7l/wheel/porous_media/resources/zonation 2024-02-01T20:29:47,276 copying build/lib/porous_media/resources/zonation/mesh_zonation.vtk -> build/bdist.linux-armv7l/wheel/porous_media/resources/zonation 2024-02-01T20:29:47,280 creating build/bdist.linux-armv7l/wheel/porous_media/analyses 2024-02-01T20:29:47,281 copying build/lib/porous_media/analyses/liver_variables.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses 2024-02-01T20:29:47,283 creating build/bdist.linux-armv7l/wheel/porous_media/analyses/spt 2024-02-01T20:29:47,284 copying build/lib/porous_media/analyses/spt/spt.md -> build/bdist.linux-armv7l/wheel/porous_media/analyses/spt 2024-02-01T20:29:47,285 copying build/lib/porous_media/analyses/spt/spt_plots_analysis.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses/spt 2024-02-01T20:29:47,288 copying build/lib/porous_media/analyses/spt/MII-symposium.md -> build/bdist.linux-armv7l/wheel/porous_media/analyses/spt 2024-02-01T20:29:47,289 copying build/lib/porous_media/analyses/spt/spt_plots_geometry.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses/spt 2024-02-01T20:29:47,292 copying build/lib/porous_media/analyses/spt/spt_data_processing.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses/spt 2024-02-01T20:29:47,293 copying build/lib/porous_media/analyses/spt/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses/spt 2024-02-01T20:29:47,295 copying build/lib/porous_media/analyses/spt/spt_information.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses/spt 2024-02-01T20:29:47,298 creating build/bdist.linux-armv7l/wheel/porous_media/analyses/examples 2024-02-01T20:29:47,299 copying build/lib/porous_media/analyses/examples/groups.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses/examples 2024-02-01T20:29:47,301 copying build/lib/porous_media/analyses/examples/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses/examples 2024-02-01T20:29:47,302 copying build/lib/porous_media/analyses/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses 2024-02-01T20:29:47,304 creating build/bdist.linux-armv7l/wheel/porous_media/analyses/simliva 2024-02-01T20:29:47,305 copying build/lib/porous_media/analyses/simliva/simliva_example.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses/simliva 2024-02-01T20:29:47,307 copying build/lib/porous_media/analyses/simliva/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses/simliva 2024-02-01T20:29:47,308 copying build/lib/porous_media/log.py -> build/bdist.linux-armv7l/wheel/porous_media 2024-02-01T20:29:47,311 creating build/bdist.linux-armv7l/wheel/porous_media/visualization 2024-02-01T20:29:47,312 copying build/lib/porous_media/visualization/video.py -> build/bdist.linux-armv7l/wheel/porous_media/visualization 2024-02-01T20:29:47,313 copying build/lib/porous_media/visualization/image_manipulation.py -> build/bdist.linux-armv7l/wheel/porous_media/visualization 2024-02-01T20:29:47,316 copying build/lib/porous_media/visualization/pyvista_visualization.py -> build/bdist.linux-armv7l/wheel/porous_media/visualization 2024-02-01T20:29:47,318 copying build/lib/porous_media/visualization/plots.py -> build/bdist.linux-armv7l/wheel/porous_media/visualization 2024-02-01T20:29:47,320 copying build/lib/porous_media/visualization/vtu_reader.py -> build/bdist.linux-armv7l/wheel/porous_media/visualization 2024-02-01T20:29:47,322 copying build/lib/porous_media/visualization/image_annotation.py -> build/bdist.linux-armv7l/wheel/porous_media/visualization 2024-02-01T20:29:47,323 copying build/lib/porous_media/visualization/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media/visualization 2024-02-01T20:29:47,325 creating build/bdist.linux-armv7l/wheel/porous_media/febio 2024-02-01T20:29:47,326 copying build/lib/porous_media/febio/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media/febio 2024-02-01T20:29:47,328 copying build/lib/porous_media/febio/febio_manipulation.py -> build/bdist.linux-armv7l/wheel/porous_media/febio 2024-02-01T20:29:47,329 copying build/lib/porous_media/console.py -> build/bdist.linux-armv7l/wheel/porous_media 2024-02-01T20:29:47,332 creating build/bdist.linux-armv7l/wheel/porous_media/mesh 2024-02-01T20:29:47,332 copying build/lib/porous_media/mesh/mesh_tools.py -> build/bdist.linux-armv7l/wheel/porous_media/mesh 2024-02-01T20:29:47,334 copying build/lib/porous_media/mesh/mesh_zonation.py -> build/bdist.linux-armv7l/wheel/porous_media/mesh 2024-02-01T20:29:47,336 copying build/lib/porous_media/mesh/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media/mesh 2024-02-01T20:29:47,338 copying build/lib/porous_media/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media 2024-02-01T20:29:47,339 running install_egg_info 2024-02-01T20:29:47,371 Copying src/porous_media.egg-info to build/bdist.linux-armv7l/wheel/porous_media-0.1.6-py3.11.egg-info 2024-02-01T20:29:47,383 running install_scripts 2024-02-01T20:29:47,404 creating build/bdist.linux-armv7l/wheel/porous_media-0.1.6.dist-info/WHEEL 2024-02-01T20:29:47,406 creating '/tmp/pip-wheel-323umson/porous_media-0.1.6-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-02-01T20:29:47,409 adding 'porous_media/__init__.py' 2024-02-01T20:29:47,410 adding 'porous_media/console.py' 2024-02-01T20:29:47,411 adding 'porous_media/log.py' 2024-02-01T20:29:47,412 adding 'porous_media/py.typed' 2024-02-01T20:29:47,414 adding 'porous_media/analyses/__init__.py' 2024-02-01T20:29:47,415 adding 'porous_media/analyses/liver_variables.py' 2024-02-01T20:29:47,417 adding 'porous_media/analyses/examples/__init__.py' 2024-02-01T20:29:47,418 adding 'porous_media/analyses/examples/groups.py' 2024-02-01T20:29:47,420 adding 'porous_media/analyses/simliva/__init__.py' 2024-02-01T20:29:47,421 adding 'porous_media/analyses/simliva/simliva_example.py' 2024-02-01T20:29:47,423 adding 'porous_media/analyses/spt/MII-symposium.md' 2024-02-01T20:29:47,424 adding 'porous_media/analyses/spt/__init__.py' 2024-02-01T20:29:47,426 adding 'porous_media/analyses/spt/spt.md' 2024-02-01T20:29:47,427 adding 'porous_media/analyses/spt/spt_data_processing.py' 2024-02-01T20:29:47,428 adding 'porous_media/analyses/spt/spt_information.py' 2024-02-01T20:29:47,430 adding 'porous_media/analyses/spt/spt_plots_analysis.py' 2024-02-01T20:29:47,432 adding 'porous_media/analyses/spt/spt_plots_geometry.py' 2024-02-01T20:29:47,434 adding 'porous_media/data/__init__.py' 2024-02-01T20:29:47,458 adding 'porous_media/data/flow_dependency.png' 2024-02-01T20:29:47,461 adding 'porous_media/data/xdmf_calculations.py' 2024-02-01T20:29:47,464 adding 'porous_media/data/xdmf_tools.py' 2024-02-01T20:29:47,466 adding 'porous_media/febio/__init__.py' 2024-02-01T20:29:47,468 adding 'porous_media/febio/febio_manipulation.py' 2024-02-01T20:29:47,470 adding 'porous_media/mesh/__init__.py' 2024-02-01T20:29:47,472 adding 'porous_media/mesh/mesh_tools.py' 2024-02-01T20:29:47,475 adding 'porous_media/mesh/mesh_zonation.py' 2024-02-01T20:29:47,534 adding 'porous_media/resources/images/mesh_zonation.png' 2024-02-01T20:29:47,629 adding 'porous_media/resources/vtk/vtk_single/lobule_zonation_pattern.t0022.vtk' 2024-02-01T20:29:47,646 adding 'porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0000.vtk' 2024-02-01T20:29:47,730 adding 'porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0008.vtk' 2024-02-01T20:29:47,815 adding 'porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0022.vtk' 2024-02-01T20:29:47,820 adding 'porous_media/resources/zonation/mesh_zonation.h5' 2024-02-01T20:29:47,830 adding 'porous_media/resources/zonation/mesh_zonation.vtk' 2024-02-01T20:29:47,831 adding 'porous_media/resources/zonation/mesh_zonation.xdmf' 2024-02-01T20:29:47,929 adding 'porous_media/resources/zonation/mesh_zonation_lobulus.vtk' 2024-02-01T20:29:47,934 adding 'porous_media/visualization/__init__.py' 2024-02-01T20:29:47,935 adding 'porous_media/visualization/image_annotation.py' 2024-02-01T20:29:47,937 adding 'porous_media/visualization/image_manipulation.py' 2024-02-01T20:29:47,938 adding 'porous_media/visualization/plots.py' 2024-02-01T20:29:47,940 adding 'porous_media/visualization/pyvista_visualization.py' 2024-02-01T20:29:47,941 adding 'porous_media/visualization/video.py' 2024-02-01T20:29:47,943 adding 'porous_media/visualization/vtu_reader.py' 2024-02-01T20:29:47,945 adding 'porous_media-0.1.6.dist-info/LICENSE' 2024-02-01T20:29:47,947 adding 'porous_media-0.1.6.dist-info/METADATA' 2024-02-01T20:29:47,948 adding 'porous_media-0.1.6.dist-info/WHEEL' 2024-02-01T20:29:47,949 adding 'porous_media-0.1.6.dist-info/top_level.txt' 2024-02-01T20:29:47,950 adding 'porous_media-0.1.6.dist-info/zip-safe' 2024-02-01T20:29:47,951 adding 'porous_media-0.1.6.dist-info/RECORD' 2024-02-01T20:29:47,970 removing build/bdist.linux-armv7l/wheel 2024-02-01T20:29:48,098 Building wheel for porous-media (setup.py): finished with status 'done' 2024-02-01T20:29:48,112 Created wheel for porous-media: filename=porous_media-0.1.6-py2.py3-none-any.whl size=1131008 sha256=d22bbf49d4b6af6bbed21d1bf097949499976b7a6f39a4aca45557699c7121bf 2024-02-01T20:29:48,113 Stored in directory: /tmp/pip-ephem-wheel-cache-dcbblsvg/wheels/6b/23/4e/11907e508529c897c00139d63faccc6262cd3f67198615d038 2024-02-01T20:29:48,126 Successfully built porous-media 2024-02-01T20:29:48,154 Removed build tracker: '/tmp/pip-build-tracker-yp68ovx1'