2024-02-01T20:31:45,632 Created temporary directory: /tmp/pip-build-tracker-qhclxid6
2024-02-01T20:31:45,633 Initialized build tracking at /tmp/pip-build-tracker-qhclxid6
2024-02-01T20:31:45,634 Created build tracker: /tmp/pip-build-tracker-qhclxid6
2024-02-01T20:31:45,634 Entered build tracker: /tmp/pip-build-tracker-qhclxid6
2024-02-01T20:31:45,635 Created temporary directory: /tmp/pip-wheel-opdutsue
2024-02-01T20:31:45,638 Created temporary directory: /tmp/pip-ephem-wheel-cache-ol0wl0ya
2024-02-01T20:31:45,660 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-02-01T20:31:45,664 2 location(s) to search for versions of porous-media:
2024-02-01T20:31:45,664 * https://pypi.org/simple/porous-media/
2024-02-01T20:31:45,664 * https://www.piwheels.org/simple/porous-media/
2024-02-01T20:31:45,665 Fetching project page and analyzing links: https://pypi.org/simple/porous-media/
2024-02-01T20:31:45,665 Getting page https://pypi.org/simple/porous-media/
2024-02-01T20:31:45,667 Found index url https://pypi.org/simple/
2024-02-01T20:31:45,808 Fetched page https://pypi.org/simple/porous-media/ as application/vnd.pypi.simple.v1+json
2024-02-01T20:31:45,813   Skipping link: No binaries permitted for porous-media: https://files.pythonhosted.org/packages/8d/aa/23156715fa495249b2758769e4fa2567e7760d8163a52093c07b32cab1f7/porous_media-0.1.0-py2.py3-none-any.whl (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9)
2024-02-01T20:31:45,814   Found link https://files.pythonhosted.org/packages/03/ae/895e5a752d9520e0cab951bb55c0cf72a1b030407edf4f68df420e091dbf/porous_media-0.1.0.tar.gz (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9), version: 0.1.0
2024-02-01T20:31:45,815   Skipping link: No binaries permitted for porous-media: https://files.pythonhosted.org/packages/7a/2b/68bf0447869b0e05a5d80d56fa7e51b643a0361dea2fbeda73da2d2ea5e6/porous_media-0.1.1-py2.py3-none-any.whl (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9)
2024-02-01T20:31:45,815   Found link https://files.pythonhosted.org/packages/1c/19/afaf97f13a4c6782bfb31883c7bfe177c7ec44e00708fac2c72e570d30b7/porous_media-0.1.1.tar.gz (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9), version: 0.1.1
2024-02-01T20:31:45,816   Skipping link: No binaries permitted for porous-media: https://files.pythonhosted.org/packages/4e/7f/dd78526e28ad2a7aaef881c6cde3d259c9a6878e5119f7bea051dba2b901/porous_media-0.1.2-py2.py3-none-any.whl (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9)
2024-02-01T20:31:45,817   Found link https://files.pythonhosted.org/packages/c6/10/1fb8da0ed29a49642f003f479d058d99b17a25fb39718c8059447e81f19b/porous_media-0.1.2.tar.gz (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9), version: 0.1.2
2024-02-01T20:31:45,818   Skipping link: No binaries permitted for porous-media: https://files.pythonhosted.org/packages/09/d1/d05f573f6a568b9e5a5b8c312f82b13987a1c09883b2310b71a554660ed2/porous_media-0.1.3-py2.py3-none-any.whl (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9)
2024-02-01T20:31:45,819   Found link https://files.pythonhosted.org/packages/12/37/9300f1927b7193000a0808c54e609207a5b6e48a7cb6dcadb727fd0d5eab/porous_media-0.1.3.tar.gz (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9), version: 0.1.3
2024-02-01T20:31:45,820   Skipping link: No binaries permitted for porous-media: https://files.pythonhosted.org/packages/28/5b/52c6fa3fed13747d0eb33d9adfbb1bc241529e4d065d527de90e9ed291af/porous_media-0.1.5-py2.py3-none-any.whl (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9)
2024-02-01T20:31:45,820   Found link https://files.pythonhosted.org/packages/ff/13/4e9c4f8698177f147b15ea3a97bd35d1d6db20cb6d48e06b46b11c9402f3/porous_media-0.1.5.tar.gz (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9), version: 0.1.5
2024-02-01T20:31:45,821   Skipping link: No binaries permitted for porous-media: https://files.pythonhosted.org/packages/f3/4d/a1bccfd58733301094ad6f8dda871997fe8f6fa33b437f3e18bde049ad1e/porous_media-0.1.6-py2.py3-none-any.whl (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9)
2024-02-01T20:31:45,822   Found link https://files.pythonhosted.org/packages/b6/7b/8bf2e6c5dd5fd149eba27c01484a3ce7180febd4d0f60184e1ab0bbd8ef8/porous_media-0.1.6.tar.gz (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9), version: 0.1.6
2024-02-01T20:31:45,823   Skipping link: No binaries permitted for porous-media: https://files.pythonhosted.org/packages/be/51/88176485305d519a2c7d26aac9d69b2694c3cc0a0b5a91f8779abcee834c/porous_media-0.1.7-py2.py3-none-any.whl (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9)
2024-02-01T20:31:45,824   Found link https://files.pythonhosted.org/packages/38/7e/f03709885fafe7c9713184fbfbf46ce66348af0aea2347a4b201d20e9ae5/porous_media-0.1.7.tar.gz (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9), version: 0.1.7
2024-02-01T20:31:45,825   Skipping link: No binaries permitted for porous-media: https://files.pythonhosted.org/packages/b2/c8/7626fa194761ee91ddbd4e9ba2a00a1d1a01724773d0013033f9eb0d0d47/porous_media-0.2.0-py2.py3-none-any.whl (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9)
2024-02-01T20:31:45,826   Found link https://files.pythonhosted.org/packages/82/56/74f40b37724413a4b7e64ab051e0f3da1379115b3714c21f44db182532ca/porous_media-0.2.0.tar.gz (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9), version: 0.2.0
2024-02-01T20:31:45,826   Skipping link: No binaries permitted for porous-media: https://files.pythonhosted.org/packages/8f/fd/45c772bd507140db766055597d18e33bd135d8726829838189c76140afe7/porous_media-0.2.1-py2.py3-none-any.whl (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9)
2024-02-01T20:31:45,827   Found link https://files.pythonhosted.org/packages/4a/0e/96cc5aca564110ec968da13044a9ef7af04f6d1eb1ab0674f046111ace2b/porous_media-0.2.1.tar.gz (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9), version: 0.2.1
2024-02-01T20:31:45,828 Fetching project page and analyzing links: https://www.piwheels.org/simple/porous-media/
2024-02-01T20:31:45,828 Getting page https://www.piwheels.org/simple/porous-media/
2024-02-01T20:31:45,830 Found index url https://www.piwheels.org/simple/
2024-02-01T20:31:45,985 Fetched page https://www.piwheels.org/simple/porous-media/ as text/html
2024-02-01T20:31:45,988   Skipping link: No binaries permitted for porous-media: https://www.piwheels.org/simple/porous-media/porous_media-0.1.6-py2.py3-none-any.whl#sha256=d22bbf49d4b6af6bbed21d1bf097949499976b7a6f39a4aca45557699c7121bf (from https://www.piwheels.org/simple/porous-media/) (requires-python:>=3.9)
2024-02-01T20:31:45,989   Skipping link: No binaries permitted for porous-media: https://www.piwheels.org/simple/porous-media/porous_media-0.1.5-py2.py3-none-any.whl#sha256=cbeead35bacddf92c5d1b46faa193fe90ce1d29664223c85861d02b0e5826aa1 (from https://www.piwheels.org/simple/porous-media/) (requires-python:>=3.9)
2024-02-01T20:31:45,989   Skipping link: No binaries permitted for porous-media: https://www.piwheels.org/simple/porous-media/porous_media-0.1.3-py2.py3-none-any.whl#sha256=da500be3d674cd26bb4400cda802088fd4e1361080a4be1a2e2f525bd050aec3 (from https://www.piwheels.org/simple/porous-media/) (requires-python:>=3.9)
2024-02-01T20:31:45,990   Skipping link: No binaries permitted for porous-media: https://www.piwheels.org/simple/porous-media/porous_media-0.1.2-py2.py3-none-any.whl#sha256=2e11acfaa8901230a1cbff1cec7bb5c9ad8d629684ba176b9a36ff622fdee90b (from https://www.piwheels.org/simple/porous-media/) (requires-python:>=3.9)
2024-02-01T20:31:45,991   Skipping link: No binaries permitted for porous-media: https://www.piwheels.org/simple/porous-media/porous_media-0.1.1-py2.py3-none-any.whl#sha256=73590dad04a9e67fda010bcf97fe37b17fd0f4c3403cf4e475f9a2c3c2330626 (from https://www.piwheels.org/simple/porous-media/) (requires-python:>=3.9)
2024-02-01T20:31:45,991   Skipping link: No binaries permitted for porous-media: https://www.piwheels.org/simple/porous-media/porous_media-0.1.0-py2.py3-none-any.whl#sha256=92ec168e839a0e69eacf0b16c74c0afc9240778d9298a93c919a19459c34dea0 (from https://www.piwheels.org/simple/porous-media/) (requires-python:>=3.9)
2024-02-01T20:31:45,992 Skipping link: not a file: https://www.piwheels.org/simple/porous-media/
2024-02-01T20:31:45,993 Skipping link: not a file: https://pypi.org/simple/porous-media/
2024-02-01T20:31:46,012 Given no hashes to check 1 links for project 'porous-media': discarding no candidates
2024-02-01T20:31:46,031 Collecting porous-media==0.1.7
2024-02-01T20:31:46,033   Created temporary directory: /tmp/pip-unpack-q4g7gojq
2024-02-01T20:31:46,276   Downloading porous_media-0.1.7.tar.gz (1.1 MB)
2024-02-01T20:31:46,703   Added porous-media==0.1.7 from https://files.pythonhosted.org/packages/38/7e/f03709885fafe7c9713184fbfbf46ce66348af0aea2347a4b201d20e9ae5/porous_media-0.1.7.tar.gz to build tracker '/tmp/pip-build-tracker-qhclxid6'
2024-02-01T20:31:46,704   Running setup.py (path:/tmp/pip-wheel-opdutsue/porous-media_0022ca8cdf09475f9344d110373e10d2/setup.py) egg_info for package porous-media
2024-02-01T20:31:46,705   Created temporary directory: /tmp/pip-pip-egg-info-ycxzf5bp
2024-02-01T20:31:46,706   Preparing metadata (setup.py): started
2024-02-01T20:31:46,707   Running command python setup.py egg_info
2024-02-01T20:31:47,906   running egg_info
2024-02-01T20:31:47,907   creating /tmp/pip-pip-egg-info-ycxzf5bp/porous_media.egg-info
2024-02-01T20:31:47,932   writing /tmp/pip-pip-egg-info-ycxzf5bp/porous_media.egg-info/PKG-INFO
2024-02-01T20:31:47,940   writing dependency_links to /tmp/pip-pip-egg-info-ycxzf5bp/porous_media.egg-info/dependency_links.txt
2024-02-01T20:31:47,945   writing requirements to /tmp/pip-pip-egg-info-ycxzf5bp/porous_media.egg-info/requires.txt
2024-02-01T20:31:47,946   writing top-level names to /tmp/pip-pip-egg-info-ycxzf5bp/porous_media.egg-info/top_level.txt
2024-02-01T20:31:47,947   writing manifest file '/tmp/pip-pip-egg-info-ycxzf5bp/porous_media.egg-info/SOURCES.txt'
2024-02-01T20:31:48,030   reading manifest file '/tmp/pip-pip-egg-info-ycxzf5bp/porous_media.egg-info/SOURCES.txt'
2024-02-01T20:31:48,031   reading manifest template 'MANIFEST.in'
2024-02-01T20:31:48,053   adding license file 'LICENSE'
2024-02-01T20:31:48,056   writing manifest file '/tmp/pip-pip-egg-info-ycxzf5bp/porous_media.egg-info/SOURCES.txt'
2024-02-01T20:31:48,165   Preparing metadata (setup.py): finished with status 'done'
2024-02-01T20:31:48,169   Source in /tmp/pip-wheel-opdutsue/porous-media_0022ca8cdf09475f9344d110373e10d2 has version 0.1.7, which satisfies requirement porous-media==0.1.7 from https://files.pythonhosted.org/packages/38/7e/f03709885fafe7c9713184fbfbf46ce66348af0aea2347a4b201d20e9ae5/porous_media-0.1.7.tar.gz
2024-02-01T20:31:48,170   Removed porous-media==0.1.7 from https://files.pythonhosted.org/packages/38/7e/f03709885fafe7c9713184fbfbf46ce66348af0aea2347a4b201d20e9ae5/porous_media-0.1.7.tar.gz from build tracker '/tmp/pip-build-tracker-qhclxid6'
2024-02-01T20:31:48,177 Created temporary directory: /tmp/pip-unpack-m610st7a
2024-02-01T20:31:48,178 Created temporary directory: /tmp/pip-unpack-8lv23roh
2024-02-01T20:31:48,229 Building wheels for collected packages: porous-media
2024-02-01T20:31:48,233   Created temporary directory: /tmp/pip-wheel-y91jjuu4
2024-02-01T20:31:48,234   Building wheel for porous-media (setup.py): started
2024-02-01T20:31:48,235   Destination directory: /tmp/pip-wheel-y91jjuu4
2024-02-01T20:31:48,235   Running command python setup.py bdist_wheel
2024-02-01T20:31:49,359   running bdist_wheel
2024-02-01T20:31:49,451   running build
2024-02-01T20:31:49,451   running build_py
2024-02-01T20:31:49,478   creating build
2024-02-01T20:31:49,478   creating build/lib
2024-02-01T20:31:49,479   creating build/lib/porous_media
2024-02-01T20:31:49,480   copying src/porous_media/console.py -> build/lib/porous_media
2024-02-01T20:31:49,482   copying src/porous_media/__init__.py -> build/lib/porous_media
2024-02-01T20:31:49,484   copying src/porous_media/log.py -> build/lib/porous_media
2024-02-01T20:31:49,486   creating build/lib/porous_media/analyses
2024-02-01T20:31:49,487   copying src/porous_media/analyses/__init__.py -> build/lib/porous_media/analyses
2024-02-01T20:31:49,489   copying src/porous_media/analyses/liver_variables.py -> build/lib/porous_media/analyses
2024-02-01T20:31:49,491   creating build/lib/porous_media/febio
2024-02-01T20:31:49,491   copying src/porous_media/febio/__init__.py -> build/lib/porous_media/febio
2024-02-01T20:31:49,493   copying src/porous_media/febio/febio_manipulation.py -> build/lib/porous_media/febio
2024-02-01T20:31:49,495   creating build/lib/porous_media/data
2024-02-01T20:31:49,496   copying src/porous_media/data/xdmf_calculations.py -> build/lib/porous_media/data
2024-02-01T20:31:49,498   copying src/porous_media/data/__init__.py -> build/lib/porous_media/data
2024-02-01T20:31:49,499   copying src/porous_media/data/xdmf_tools.py -> build/lib/porous_media/data
2024-02-01T20:31:49,502   creating build/lib/porous_media/mesh
2024-02-01T20:31:49,503   copying src/porous_media/mesh/mesh_tools.py -> build/lib/porous_media/mesh
2024-02-01T20:31:49,505   copying src/porous_media/mesh/mesh_zonation.py -> build/lib/porous_media/mesh
2024-02-01T20:31:49,507   copying src/porous_media/mesh/__init__.py -> build/lib/porous_media/mesh
2024-02-01T20:31:49,509   creating build/lib/porous_media/visualization
2024-02-01T20:31:49,510   copying src/porous_media/visualization/image_manipulation.py -> build/lib/porous_media/visualization
2024-02-01T20:31:49,511   copying src/porous_media/visualization/__init__.py -> build/lib/porous_media/visualization
2024-02-01T20:31:49,513   copying src/porous_media/visualization/plots.py -> build/lib/porous_media/visualization
2024-02-01T20:31:49,514   copying src/porous_media/visualization/vtu_reader.py -> build/lib/porous_media/visualization
2024-02-01T20:31:49,516   copying src/porous_media/visualization/image_annotation.py -> build/lib/porous_media/visualization
2024-02-01T20:31:49,518   copying src/porous_media/visualization/pyvista_visualization.py -> build/lib/porous_media/visualization
2024-02-01T20:31:49,520   copying src/porous_media/visualization/video.py -> build/lib/porous_media/visualization
2024-02-01T20:31:49,522   creating build/lib/porous_media/analyses/spt
2024-02-01T20:31:49,523   copying src/porous_media/analyses/spt/spt_plots_analysis.py -> build/lib/porous_media/analyses/spt
2024-02-01T20:31:49,526   copying src/porous_media/analyses/spt/spt_information.py -> build/lib/porous_media/analyses/spt
2024-02-01T20:31:49,528   copying src/porous_media/analyses/spt/__init__.py -> build/lib/porous_media/analyses/spt
2024-02-01T20:31:49,529   copying src/porous_media/analyses/spt/spt_data_processing.py -> build/lib/porous_media/analyses/spt
2024-02-01T20:31:49,531   copying src/porous_media/analyses/spt/spt_plots_geometry.py -> build/lib/porous_media/analyses/spt
2024-02-01T20:31:49,534   creating build/lib/porous_media/analyses/examples
2024-02-01T20:31:49,534   copying src/porous_media/analyses/examples/__init__.py -> build/lib/porous_media/analyses/examples
2024-02-01T20:31:49,536   copying src/porous_media/analyses/examples/groups.py -> build/lib/porous_media/analyses/examples
2024-02-01T20:31:49,538   creating build/lib/porous_media/analyses/simliva
2024-02-01T20:31:49,539   copying src/porous_media/analyses/simliva/__init__.py -> build/lib/porous_media/analyses/simliva
2024-02-01T20:31:49,541   copying src/porous_media/analyses/simliva/simliva_example.py -> build/lib/porous_media/analyses/simliva
2024-02-01T20:31:49,543   running egg_info
2024-02-01T20:31:49,597   writing src/porous_media.egg-info/PKG-INFO
2024-02-01T20:31:49,605   writing dependency_links to src/porous_media.egg-info/dependency_links.txt
2024-02-01T20:31:49,609   writing requirements to src/porous_media.egg-info/requires.txt
2024-02-01T20:31:49,611   writing top-level names to src/porous_media.egg-info/top_level.txt
2024-02-01T20:31:49,643   reading manifest file 'src/porous_media.egg-info/SOURCES.txt'
2024-02-01T20:31:49,645   reading manifest template 'MANIFEST.in'
2024-02-01T20:31:49,666   adding license file 'LICENSE'
2024-02-01T20:31:49,670   writing manifest file 'src/porous_media.egg-info/SOURCES.txt'
2024-02-01T20:31:49,672   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'porous_media.resources.images' is absent from the `packages` configuration.
2024-02-01T20:31:49,673   !!

2024-02-01T20:31:49,674           ********************************************************************************
2024-02-01T20:31:49,674           ############################
2024-02-01T20:31:49,675           # Package would be ignored #
2024-02-01T20:31:49,675           ############################
2024-02-01T20:31:49,675           Python recognizes 'porous_media.resources.images' as an importable package[^1],
2024-02-01T20:31:49,676           but it is absent from setuptools' `packages` configuration.

2024-02-01T20:31:49,677           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-01T20:31:49,677           package, please make sure that 'porous_media.resources.images' is explicitly added
2024-02-01T20:31:49,678           to the `packages` configuration field.

2024-02-01T20:31:49,679           Alternatively, you can also rely on setuptools' discovery methods
2024-02-01T20:31:49,679           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-01T20:31:49,680           instead of `find_packages(...)`/`find:`).

2024-02-01T20:31:49,681           You can read more about "package discovery" on setuptools documentation page:

2024-02-01T20:31:49,681           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-01T20:31:49,682           If you don't want 'porous_media.resources.images' to be distributed and are
2024-02-01T20:31:49,683           already explicitly excluding 'porous_media.resources.images' via
2024-02-01T20:31:49,683           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-01T20:31:49,684           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-01T20:31:49,684           combination with a more fine grained `package-data` configuration.

2024-02-01T20:31:49,685           You can read more about "package data files" on setuptools documentation page:

2024-02-01T20:31:49,686           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-01T20:31:49,688           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-01T20:31:49,689                 even if it does not contain any `.py` files.
2024-02-01T20:31:49,690                 On the other hand, currently there is no concept of package data
2024-02-01T20:31:49,691                 directory, all directories are treated like packages.
2024-02-01T20:31:49,692           ********************************************************************************

2024-02-01T20:31:49,694   !!
2024-02-01T20:31:49,694     check.warn(importable)
2024-02-01T20:31:49,695   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'porous_media.resources.vtk.vtk_single' is absent from the `packages` configuration.
2024-02-01T20:31:49,695   !!

2024-02-01T20:31:49,696           ********************************************************************************
2024-02-01T20:31:49,697           ############################
2024-02-01T20:31:49,697           # Package would be ignored #
2024-02-01T20:31:49,698           ############################
2024-02-01T20:31:49,698           Python recognizes 'porous_media.resources.vtk.vtk_single' as an importable package[^1],
2024-02-01T20:31:49,699           but it is absent from setuptools' `packages` configuration.

2024-02-01T20:31:49,700           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-01T20:31:49,702           package, please make sure that 'porous_media.resources.vtk.vtk_single' is explicitly added
2024-02-01T20:31:49,705           to the `packages` configuration field.

2024-02-01T20:31:49,706           Alternatively, you can also rely on setuptools' discovery methods
2024-02-01T20:31:49,706           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-01T20:31:49,707           instead of `find_packages(...)`/`find:`).

2024-02-01T20:31:49,708           You can read more about "package discovery" on setuptools documentation page:

2024-02-01T20:31:49,709           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-01T20:31:49,711           If you don't want 'porous_media.resources.vtk.vtk_single' to be distributed and are
2024-02-01T20:31:49,711           already explicitly excluding 'porous_media.resources.vtk.vtk_single' via
2024-02-01T20:31:49,712           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-01T20:31:49,712           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-01T20:31:49,713           combination with a more fine grained `package-data` configuration.

2024-02-01T20:31:49,714           You can read more about "package data files" on setuptools documentation page:

2024-02-01T20:31:49,714           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-01T20:31:49,716           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-01T20:31:49,717                 even if it does not contain any `.py` files.
2024-02-01T20:31:49,718                 On the other hand, currently there is no concept of package data
2024-02-01T20:31:49,718                 directory, all directories are treated like packages.
2024-02-01T20:31:49,719           ********************************************************************************

2024-02-01T20:31:49,721   !!
2024-02-01T20:31:49,721     check.warn(importable)
2024-02-01T20:31:49,722   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'porous_media.resources.vtk.vtk_timecourse' is absent from the `packages` configuration.
2024-02-01T20:31:49,723   !!

2024-02-01T20:31:49,724           ********************************************************************************
2024-02-01T20:31:49,725           ############################
2024-02-01T20:31:49,726           # Package would be ignored #
2024-02-01T20:31:49,726           ############################
2024-02-01T20:31:49,727           Python recognizes 'porous_media.resources.vtk.vtk_timecourse' as an importable package[^1],
2024-02-01T20:31:49,727           but it is absent from setuptools' `packages` configuration.

2024-02-01T20:31:49,728           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-01T20:31:49,729           package, please make sure that 'porous_media.resources.vtk.vtk_timecourse' is explicitly added
2024-02-01T20:31:49,730           to the `packages` configuration field.

2024-02-01T20:31:49,735           Alternatively, you can also rely on setuptools' discovery methods
2024-02-01T20:31:49,736           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-01T20:31:49,737           instead of `find_packages(...)`/`find:`).

2024-02-01T20:31:49,739           You can read more about "package discovery" on setuptools documentation page:

2024-02-01T20:31:49,741           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-01T20:31:49,743           If you don't want 'porous_media.resources.vtk.vtk_timecourse' to be distributed and are
2024-02-01T20:31:49,744           already explicitly excluding 'porous_media.resources.vtk.vtk_timecourse' via
2024-02-01T20:31:49,745           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-01T20:31:49,745           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-01T20:31:49,746           combination with a more fine grained `package-data` configuration.

2024-02-01T20:31:49,747           You can read more about "package data files" on setuptools documentation page:

2024-02-01T20:31:49,748           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-01T20:31:49,750           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-01T20:31:49,750                 even if it does not contain any `.py` files.
2024-02-01T20:31:49,751                 On the other hand, currently there is no concept of package data
2024-02-01T20:31:49,751                 directory, all directories are treated like packages.
2024-02-01T20:31:49,751           ********************************************************************************

2024-02-01T20:31:49,752   !!
2024-02-01T20:31:49,753     check.warn(importable)
2024-02-01T20:31:49,753   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'porous_media.resources.zonation' is absent from the `packages` configuration.
2024-02-01T20:31:49,754   !!

2024-02-01T20:31:49,759           ********************************************************************************
2024-02-01T20:31:49,761           ############################
2024-02-01T20:31:49,762           # Package would be ignored #
2024-02-01T20:31:49,762           ############################
2024-02-01T20:31:49,763           Python recognizes 'porous_media.resources.zonation' as an importable package[^1],
2024-02-01T20:31:49,763           but it is absent from setuptools' `packages` configuration.

2024-02-01T20:31:49,764           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-01T20:31:49,765           package, please make sure that 'porous_media.resources.zonation' is explicitly added
2024-02-01T20:31:49,765           to the `packages` configuration field.

2024-02-01T20:31:49,767           Alternatively, you can also rely on setuptools' discovery methods
2024-02-01T20:31:49,768           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-01T20:31:49,769           instead of `find_packages(...)`/`find:`).

2024-02-01T20:31:49,770           You can read more about "package discovery" on setuptools documentation page:

2024-02-01T20:31:49,771           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-01T20:31:49,772           If you don't want 'porous_media.resources.zonation' to be distributed and are
2024-02-01T20:31:49,772           already explicitly excluding 'porous_media.resources.zonation' via
2024-02-01T20:31:49,773           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-01T20:31:49,773           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-01T20:31:49,774           combination with a more fine grained `package-data` configuration.

2024-02-01T20:31:49,775           You can read more about "package data files" on setuptools documentation page:

2024-02-01T20:31:49,776           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-01T20:31:49,777           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-01T20:31:49,778                 even if it does not contain any `.py` files.
2024-02-01T20:31:49,779                 On the other hand, currently there is no concept of package data
2024-02-01T20:31:49,779                 directory, all directories are treated like packages.
2024-02-01T20:31:49,780           ********************************************************************************

2024-02-01T20:31:49,781   !!
2024-02-01T20:31:49,781     check.warn(importable)
2024-02-01T20:31:49,782   copying src/porous_media/py.typed -> build/lib/porous_media
2024-02-01T20:31:49,782   creating build/lib/porous_media/resources
2024-02-01T20:31:49,783   creating build/lib/porous_media/resources/images
2024-02-01T20:31:49,784   copying src/porous_media/resources/images/mesh_zonation.png -> build/lib/porous_media/resources/images
2024-02-01T20:31:49,784   creating build/lib/porous_media/resources/vtk
2024-02-01T20:31:49,785   creating build/lib/porous_media/resources/vtk/vtk_single
2024-02-01T20:31:49,785   copying src/porous_media/resources/vtk/vtk_single/lobule_zonation_pattern.t0022.vtk -> build/lib/porous_media/resources/vtk/vtk_single
2024-02-01T20:31:49,786   creating build/lib/porous_media/resources/vtk/vtk_timecourse
2024-02-01T20:31:49,787   copying src/porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0000.vtk -> build/lib/porous_media/resources/vtk/vtk_timecourse
2024-02-01T20:31:49,787   copying src/porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0008.vtk -> build/lib/porous_media/resources/vtk/vtk_timecourse
2024-02-01T20:31:49,787   copying src/porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0022.vtk -> build/lib/porous_media/resources/vtk/vtk_timecourse
2024-02-01T20:31:49,788   creating build/lib/porous_media/resources/zonation
2024-02-01T20:31:49,788   copying src/porous_media/resources/zonation/mesh_zonation.h5 -> build/lib/porous_media/resources/zonation
2024-02-01T20:31:49,789   copying src/porous_media/resources/zonation/mesh_zonation.vtk -> build/lib/porous_media/resources/zonation
2024-02-01T20:31:49,789   copying src/porous_media/resources/zonation/mesh_zonation.xdmf -> build/lib/porous_media/resources/zonation
2024-02-01T20:31:49,790   copying src/porous_media/resources/zonation/mesh_zonation_lobulus.vtk -> build/lib/porous_media/resources/zonation
2024-02-01T20:31:49,790   copying src/porous_media/data/flow_dependency.png -> build/lib/porous_media/data
2024-02-01T20:31:49,791   copying src/porous_media/analyses/spt/MII-symposium.md -> build/lib/porous_media/analyses/spt
2024-02-01T20:31:49,791   copying src/porous_media/analyses/spt/spt.md -> build/lib/porous_media/analyses/spt
2024-02-01T20:31:49,809   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-02-01T20:31:49,810   !!

2024-02-01T20:31:49,811           ********************************************************************************
2024-02-01T20:31:49,812           Please avoid running ``setup.py`` directly.
2024-02-01T20:31:49,812           Instead, use pypa/build, pypa/installer or other
2024-02-01T20:31:49,813           standards-based tools.

2024-02-01T20:31:49,814           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-02-01T20:31:49,814           ********************************************************************************

2024-02-01T20:31:49,816   !!
2024-02-01T20:31:49,816     self.initialize_options()
2024-02-01T20:31:49,835   installing to build/bdist.linux-armv7l/wheel
2024-02-01T20:31:49,836   running install
2024-02-01T20:31:49,859   running install_lib
2024-02-01T20:31:49,883   creating build/bdist.linux-armv7l
2024-02-01T20:31:49,884   creating build/bdist.linux-armv7l/wheel
2024-02-01T20:31:49,885   creating build/bdist.linux-armv7l/wheel/porous_media
2024-02-01T20:31:49,887   creating build/bdist.linux-armv7l/wheel/porous_media/analyses
2024-02-01T20:31:49,888   creating build/bdist.linux-armv7l/wheel/porous_media/analyses/spt
2024-02-01T20:31:49,889   copying build/lib/porous_media/analyses/spt/spt_plots_analysis.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses/spt
2024-02-01T20:31:49,892   copying build/lib/porous_media/analyses/spt/MII-symposium.md -> build/bdist.linux-armv7l/wheel/porous_media/analyses/spt
2024-02-01T20:31:49,894   copying build/lib/porous_media/analyses/spt/spt_information.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses/spt
2024-02-01T20:31:49,896   copying build/lib/porous_media/analyses/spt/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses/spt
2024-02-01T20:31:49,898   copying build/lib/porous_media/analyses/spt/spt.md -> build/bdist.linux-armv7l/wheel/porous_media/analyses/spt
2024-02-01T20:31:49,900   copying build/lib/porous_media/analyses/spt/spt_data_processing.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses/spt
2024-02-01T20:31:49,901   copying build/lib/porous_media/analyses/spt/spt_plots_geometry.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses/spt
2024-02-01T20:31:49,904   copying build/lib/porous_media/analyses/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses
2024-02-01T20:31:49,906   creating build/bdist.linux-armv7l/wheel/porous_media/analyses/examples
2024-02-01T20:31:49,907   copying build/lib/porous_media/analyses/examples/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses/examples
2024-02-01T20:31:49,908   copying build/lib/porous_media/analyses/examples/groups.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses/examples
2024-02-01T20:31:49,910   creating build/bdist.linux-armv7l/wheel/porous_media/analyses/simliva
2024-02-01T20:31:49,911   copying build/lib/porous_media/analyses/simliva/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses/simliva
2024-02-01T20:31:49,913   copying build/lib/porous_media/analyses/simliva/simliva_example.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses/simliva
2024-02-01T20:31:49,915   copying build/lib/porous_media/analyses/liver_variables.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses
2024-02-01T20:31:49,917   creating build/bdist.linux-armv7l/wheel/porous_media/febio
2024-02-01T20:31:49,917   copying build/lib/porous_media/febio/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media/febio
2024-02-01T20:31:49,919   copying build/lib/porous_media/febio/febio_manipulation.py -> build/bdist.linux-armv7l/wheel/porous_media/febio
2024-02-01T20:31:49,921   copying build/lib/porous_media/console.py -> build/bdist.linux-armv7l/wheel/porous_media
2024-02-01T20:31:49,923   creating build/bdist.linux-armv7l/wheel/porous_media/data
2024-02-01T20:31:49,924   copying build/lib/porous_media/data/xdmf_calculations.py -> build/bdist.linux-armv7l/wheel/porous_media/data
2024-02-01T20:31:49,926   copying build/lib/porous_media/data/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media/data
2024-02-01T20:31:49,927   copying build/lib/porous_media/data/flow_dependency.png -> build/bdist.linux-armv7l/wheel/porous_media/data
2024-02-01T20:31:49,933   copying build/lib/porous_media/data/xdmf_tools.py -> build/bdist.linux-armv7l/wheel/porous_media/data
2024-02-01T20:31:49,935   copying build/lib/porous_media/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media
2024-02-01T20:31:49,937   copying build/lib/porous_media/py.typed -> build/bdist.linux-armv7l/wheel/porous_media
2024-02-01T20:31:49,939   creating build/bdist.linux-armv7l/wheel/porous_media/resources
2024-02-01T20:31:49,940   creating build/bdist.linux-armv7l/wheel/porous_media/resources/zonation
2024-02-01T20:31:49,941   copying build/lib/porous_media/resources/zonation/mesh_zonation.h5 -> build/bdist.linux-armv7l/wheel/porous_media/resources/zonation
2024-02-01T20:31:49,944   copying build/lib/porous_media/resources/zonation/mesh_zonation.xdmf -> build/bdist.linux-armv7l/wheel/porous_media/resources/zonation
2024-02-01T20:31:49,947   copying build/lib/porous_media/resources/zonation/mesh_zonation.vtk -> build/bdist.linux-armv7l/wheel/porous_media/resources/zonation
2024-02-01T20:31:49,950   copying build/lib/porous_media/resources/zonation/mesh_zonation_lobulus.vtk -> build/bdist.linux-armv7l/wheel/porous_media/resources/zonation
2024-02-01T20:31:49,961   creating build/bdist.linux-armv7l/wheel/porous_media/resources/images
2024-02-01T20:31:49,962   copying build/lib/porous_media/resources/images/mesh_zonation.png -> build/bdist.linux-armv7l/wheel/porous_media/resources/images
2024-02-01T20:31:49,971   creating build/bdist.linux-armv7l/wheel/porous_media/resources/vtk
2024-02-01T20:31:49,972   creating build/bdist.linux-armv7l/wheel/porous_media/resources/vtk/vtk_timecourse
2024-02-01T20:31:49,973   copying build/lib/porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0022.vtk -> build/bdist.linux-armv7l/wheel/porous_media/resources/vtk/vtk_timecourse
2024-02-01T20:31:49,985   copying build/lib/porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0000.vtk -> build/bdist.linux-armv7l/wheel/porous_media/resources/vtk/vtk_timecourse
2024-02-01T20:31:49,992   copying build/lib/porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0008.vtk -> build/bdist.linux-armv7l/wheel/porous_media/resources/vtk/vtk_timecourse
2024-02-01T20:31:50,003   creating build/bdist.linux-armv7l/wheel/porous_media/resources/vtk/vtk_single
2024-02-01T20:31:50,004   copying build/lib/porous_media/resources/vtk/vtk_single/lobule_zonation_pattern.t0022.vtk -> build/bdist.linux-armv7l/wheel/porous_media/resources/vtk/vtk_single
2024-02-01T20:31:50,017   creating build/bdist.linux-armv7l/wheel/porous_media/mesh
2024-02-01T20:31:50,018   copying build/lib/porous_media/mesh/mesh_tools.py -> build/bdist.linux-armv7l/wheel/porous_media/mesh
2024-02-01T20:31:50,020   copying build/lib/porous_media/mesh/mesh_zonation.py -> build/bdist.linux-armv7l/wheel/porous_media/mesh
2024-02-01T20:31:50,022   copying build/lib/porous_media/mesh/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media/mesh
2024-02-01T20:31:50,024   creating build/bdist.linux-armv7l/wheel/porous_media/visualization
2024-02-01T20:31:50,025   copying build/lib/porous_media/visualization/image_manipulation.py -> build/bdist.linux-armv7l/wheel/porous_media/visualization
2024-02-01T20:31:50,027   copying build/lib/porous_media/visualization/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media/visualization
2024-02-01T20:31:50,029   copying build/lib/porous_media/visualization/plots.py -> build/bdist.linux-armv7l/wheel/porous_media/visualization
2024-02-01T20:31:50,030   copying build/lib/porous_media/visualization/vtu_reader.py -> build/bdist.linux-armv7l/wheel/porous_media/visualization
2024-02-01T20:31:50,032   copying build/lib/porous_media/visualization/image_annotation.py -> build/bdist.linux-armv7l/wheel/porous_media/visualization
2024-02-01T20:31:50,035   copying build/lib/porous_media/visualization/pyvista_visualization.py -> build/bdist.linux-armv7l/wheel/porous_media/visualization
2024-02-01T20:31:50,037   copying build/lib/porous_media/visualization/video.py -> build/bdist.linux-armv7l/wheel/porous_media/visualization
2024-02-01T20:31:50,039   copying build/lib/porous_media/log.py -> build/bdist.linux-armv7l/wheel/porous_media
2024-02-01T20:31:50,041   running install_egg_info
2024-02-01T20:31:50,073   Copying src/porous_media.egg-info to build/bdist.linux-armv7l/wheel/porous_media-0.1.7-py3.11.egg-info
2024-02-01T20:31:50,088   running install_scripts
2024-02-01T20:31:50,111   creating build/bdist.linux-armv7l/wheel/porous_media-0.1.7.dist-info/WHEEL
2024-02-01T20:31:50,113   creating '/tmp/pip-wheel-y91jjuu4/porous_media-0.1.7-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-02-01T20:31:50,116   adding 'porous_media/__init__.py'
2024-02-01T20:31:50,117   adding 'porous_media/console.py'
2024-02-01T20:31:50,118   adding 'porous_media/log.py'
2024-02-01T20:31:50,120   adding 'porous_media/py.typed'
2024-02-01T20:31:50,122   adding 'porous_media/analyses/__init__.py'
2024-02-01T20:31:50,123   adding 'porous_media/analyses/liver_variables.py'
2024-02-01T20:31:50,125   adding 'porous_media/analyses/examples/__init__.py'
2024-02-01T20:31:50,126   adding 'porous_media/analyses/examples/groups.py'
2024-02-01T20:31:50,128   adding 'porous_media/analyses/simliva/__init__.py'
2024-02-01T20:31:50,129   adding 'porous_media/analyses/simliva/simliva_example.py'
2024-02-01T20:31:50,131   adding 'porous_media/analyses/spt/MII-symposium.md'
2024-02-01T20:31:50,132   adding 'porous_media/analyses/spt/__init__.py'
2024-02-01T20:31:50,133   adding 'porous_media/analyses/spt/spt.md'
2024-02-01T20:31:50,135   adding 'porous_media/analyses/spt/spt_data_processing.py'
2024-02-01T20:31:50,136   adding 'porous_media/analyses/spt/spt_information.py'
2024-02-01T20:31:50,138   adding 'porous_media/analyses/spt/spt_plots_analysis.py'
2024-02-01T20:31:50,140   adding 'porous_media/analyses/spt/spt_plots_geometry.py'
2024-02-01T20:31:50,141   adding 'porous_media/data/__init__.py'
2024-02-01T20:31:50,166   adding 'porous_media/data/flow_dependency.png'
2024-02-01T20:31:50,169   adding 'porous_media/data/xdmf_calculations.py'
2024-02-01T20:31:50,171   adding 'porous_media/data/xdmf_tools.py'
2024-02-01T20:31:50,173   adding 'porous_media/febio/__init__.py'
2024-02-01T20:31:50,174   adding 'porous_media/febio/febio_manipulation.py'
2024-02-01T20:31:50,175   adding 'porous_media/mesh/__init__.py'
2024-02-01T20:31:50,177   adding 'porous_media/mesh/mesh_tools.py'
2024-02-01T20:31:50,179   adding 'porous_media/mesh/mesh_zonation.py'
2024-02-01T20:31:50,219   adding 'porous_media/resources/images/mesh_zonation.png'
2024-02-01T20:31:50,304   adding 'porous_media/resources/vtk/vtk_single/lobule_zonation_pattern.t0022.vtk'
2024-02-01T20:31:50,320   adding 'porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0000.vtk'
2024-02-01T20:31:50,414   adding 'porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0008.vtk'
2024-02-01T20:31:50,498   adding 'porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0022.vtk'
2024-02-01T20:31:50,504   adding 'porous_media/resources/zonation/mesh_zonation.h5'
2024-02-01T20:31:50,513   adding 'porous_media/resources/zonation/mesh_zonation.vtk'
2024-02-01T20:31:50,515   adding 'porous_media/resources/zonation/mesh_zonation.xdmf'
2024-02-01T20:31:50,614   adding 'porous_media/resources/zonation/mesh_zonation_lobulus.vtk'
2024-02-01T20:31:50,619   adding 'porous_media/visualization/__init__.py'
2024-02-01T20:31:50,620   adding 'porous_media/visualization/image_annotation.py'
2024-02-01T20:31:50,621   adding 'porous_media/visualization/image_manipulation.py'
2024-02-01T20:31:50,623   adding 'porous_media/visualization/plots.py'
2024-02-01T20:31:50,625   adding 'porous_media/visualization/pyvista_visualization.py'
2024-02-01T20:31:50,626   adding 'porous_media/visualization/video.py'
2024-02-01T20:31:50,627   adding 'porous_media/visualization/vtu_reader.py'
2024-02-01T20:31:50,630   adding 'porous_media-0.1.7.dist-info/LICENSE'
2024-02-01T20:31:50,631   adding 'porous_media-0.1.7.dist-info/METADATA'
2024-02-01T20:31:50,632   adding 'porous_media-0.1.7.dist-info/WHEEL'
2024-02-01T20:31:50,633   adding 'porous_media-0.1.7.dist-info/top_level.txt'
2024-02-01T20:31:50,634   adding 'porous_media-0.1.7.dist-info/zip-safe'
2024-02-01T20:31:50,635   adding 'porous_media-0.1.7.dist-info/RECORD'
2024-02-01T20:31:50,649   removing build/bdist.linux-armv7l/wheel
2024-02-01T20:31:50,777   Building wheel for porous-media (setup.py): finished with status 'done'
2024-02-01T20:31:50,790   Created wheel for porous-media: filename=porous_media-0.1.7-py2.py3-none-any.whl size=1131009 sha256=b7010a5450ceca9d97be8c4339486d31abbb8a6cb76595cf3318998b37767f65
2024-02-01T20:31:50,792   Stored in directory: /tmp/pip-ephem-wheel-cache-ol0wl0ya/wheels/0c/bc/4c/19d69f503aed30b41766ab9456c8e47db4cf561793ce8ff3ae
2024-02-01T20:31:50,805 Successfully built porous-media
2024-02-01T20:31:50,838 Removed build tracker: '/tmp/pip-build-tracker-qhclxid6'