2024-02-01T20:32:33,156 Created temporary directory: /tmp/pip-build-tracker-uv236y7j
2024-02-01T20:32:33,158 Initialized build tracking at /tmp/pip-build-tracker-uv236y7j
2024-02-01T20:32:33,158 Created build tracker: /tmp/pip-build-tracker-uv236y7j
2024-02-01T20:32:33,159 Entered build tracker: /tmp/pip-build-tracker-uv236y7j
2024-02-01T20:32:33,159 Created temporary directory: /tmp/pip-wheel-cs8rr2jm
2024-02-01T20:32:33,163 Created temporary directory: /tmp/pip-ephem-wheel-cache-te6x3lj1
2024-02-01T20:32:33,184 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-02-01T20:32:33,188 2 location(s) to search for versions of porous-media:
2024-02-01T20:32:33,188 * https://pypi.org/simple/porous-media/
2024-02-01T20:32:33,188 * https://www.piwheels.org/simple/porous-media/
2024-02-01T20:32:33,189 Fetching project page and analyzing links: https://pypi.org/simple/porous-media/
2024-02-01T20:32:33,189 Getting page https://pypi.org/simple/porous-media/
2024-02-01T20:32:33,191 Found index url https://pypi.org/simple/
2024-02-01T20:32:33,330 Fetched page https://pypi.org/simple/porous-media/ as application/vnd.pypi.simple.v1+json
2024-02-01T20:32:33,334   Skipping link: No binaries permitted for porous-media: https://files.pythonhosted.org/packages/8d/aa/23156715fa495249b2758769e4fa2567e7760d8163a52093c07b32cab1f7/porous_media-0.1.0-py2.py3-none-any.whl (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9)
2024-02-01T20:32:33,335   Found link https://files.pythonhosted.org/packages/03/ae/895e5a752d9520e0cab951bb55c0cf72a1b030407edf4f68df420e091dbf/porous_media-0.1.0.tar.gz (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9), version: 0.1.0
2024-02-01T20:32:33,336   Skipping link: No binaries permitted for porous-media: https://files.pythonhosted.org/packages/7a/2b/68bf0447869b0e05a5d80d56fa7e51b643a0361dea2fbeda73da2d2ea5e6/porous_media-0.1.1-py2.py3-none-any.whl (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9)
2024-02-01T20:32:33,337   Found link https://files.pythonhosted.org/packages/1c/19/afaf97f13a4c6782bfb31883c7bfe177c7ec44e00708fac2c72e570d30b7/porous_media-0.1.1.tar.gz (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9), version: 0.1.1
2024-02-01T20:32:33,337   Skipping link: No binaries permitted for porous-media: https://files.pythonhosted.org/packages/4e/7f/dd78526e28ad2a7aaef881c6cde3d259c9a6878e5119f7bea051dba2b901/porous_media-0.1.2-py2.py3-none-any.whl (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9)
2024-02-01T20:32:33,339   Found link https://files.pythonhosted.org/packages/c6/10/1fb8da0ed29a49642f003f479d058d99b17a25fb39718c8059447e81f19b/porous_media-0.1.2.tar.gz (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9), version: 0.1.2
2024-02-01T20:32:33,339   Skipping link: No binaries permitted for porous-media: https://files.pythonhosted.org/packages/09/d1/d05f573f6a568b9e5a5b8c312f82b13987a1c09883b2310b71a554660ed2/porous_media-0.1.3-py2.py3-none-any.whl (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9)
2024-02-01T20:32:33,340   Found link https://files.pythonhosted.org/packages/12/37/9300f1927b7193000a0808c54e609207a5b6e48a7cb6dcadb727fd0d5eab/porous_media-0.1.3.tar.gz (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9), version: 0.1.3
2024-02-01T20:32:33,341   Skipping link: No binaries permitted for porous-media: https://files.pythonhosted.org/packages/28/5b/52c6fa3fed13747d0eb33d9adfbb1bc241529e4d065d527de90e9ed291af/porous_media-0.1.5-py2.py3-none-any.whl (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9)
2024-02-01T20:32:33,342   Found link https://files.pythonhosted.org/packages/ff/13/4e9c4f8698177f147b15ea3a97bd35d1d6db20cb6d48e06b46b11c9402f3/porous_media-0.1.5.tar.gz (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9), version: 0.1.5
2024-02-01T20:32:33,342   Skipping link: No binaries permitted for porous-media: https://files.pythonhosted.org/packages/f3/4d/a1bccfd58733301094ad6f8dda871997fe8f6fa33b437f3e18bde049ad1e/porous_media-0.1.6-py2.py3-none-any.whl (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9)
2024-02-01T20:32:33,343   Found link https://files.pythonhosted.org/packages/b6/7b/8bf2e6c5dd5fd149eba27c01484a3ce7180febd4d0f60184e1ab0bbd8ef8/porous_media-0.1.6.tar.gz (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9), version: 0.1.6
2024-02-01T20:32:33,344   Skipping link: No binaries permitted for porous-media: https://files.pythonhosted.org/packages/be/51/88176485305d519a2c7d26aac9d69b2694c3cc0a0b5a91f8779abcee834c/porous_media-0.1.7-py2.py3-none-any.whl (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9)
2024-02-01T20:32:33,345   Found link https://files.pythonhosted.org/packages/38/7e/f03709885fafe7c9713184fbfbf46ce66348af0aea2347a4b201d20e9ae5/porous_media-0.1.7.tar.gz (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9), version: 0.1.7
2024-02-01T20:32:33,346   Skipping link: No binaries permitted for porous-media: https://files.pythonhosted.org/packages/b2/c8/7626fa194761ee91ddbd4e9ba2a00a1d1a01724773d0013033f9eb0d0d47/porous_media-0.2.0-py2.py3-none-any.whl (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9)
2024-02-01T20:32:33,346   Found link https://files.pythonhosted.org/packages/82/56/74f40b37724413a4b7e64ab051e0f3da1379115b3714c21f44db182532ca/porous_media-0.2.0.tar.gz (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9), version: 0.2.0
2024-02-01T20:32:33,347   Skipping link: No binaries permitted for porous-media: https://files.pythonhosted.org/packages/8f/fd/45c772bd507140db766055597d18e33bd135d8726829838189c76140afe7/porous_media-0.2.1-py2.py3-none-any.whl (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9)
2024-02-01T20:32:33,348   Found link https://files.pythonhosted.org/packages/4a/0e/96cc5aca564110ec968da13044a9ef7af04f6d1eb1ab0674f046111ace2b/porous_media-0.2.1.tar.gz (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9), version: 0.2.1
2024-02-01T20:32:33,349 Fetching project page and analyzing links: https://www.piwheels.org/simple/porous-media/
2024-02-01T20:32:33,349 Getting page https://www.piwheels.org/simple/porous-media/
2024-02-01T20:32:33,351 Found index url https://www.piwheels.org/simple/
2024-02-01T20:32:33,502 Fetched page https://www.piwheels.org/simple/porous-media/ as text/html
2024-02-01T20:32:33,505   Skipping link: No binaries permitted for porous-media: https://www.piwheels.org/simple/porous-media/porous_media-0.1.6-py2.py3-none-any.whl#sha256=d22bbf49d4b6af6bbed21d1bf097949499976b7a6f39a4aca45557699c7121bf (from https://www.piwheels.org/simple/porous-media/) (requires-python:>=3.9)
2024-02-01T20:32:33,506   Skipping link: No binaries permitted for porous-media: https://www.piwheels.org/simple/porous-media/porous_media-0.1.5-py2.py3-none-any.whl#sha256=cbeead35bacddf92c5d1b46faa193fe90ce1d29664223c85861d02b0e5826aa1 (from https://www.piwheels.org/simple/porous-media/) (requires-python:>=3.9)
2024-02-01T20:32:33,506   Skipping link: No binaries permitted for porous-media: https://www.piwheels.org/simple/porous-media/porous_media-0.1.3-py2.py3-none-any.whl#sha256=da500be3d674cd26bb4400cda802088fd4e1361080a4be1a2e2f525bd050aec3 (from https://www.piwheels.org/simple/porous-media/) (requires-python:>=3.9)
2024-02-01T20:32:33,507   Skipping link: No binaries permitted for porous-media: https://www.piwheels.org/simple/porous-media/porous_media-0.1.2-py2.py3-none-any.whl#sha256=2e11acfaa8901230a1cbff1cec7bb5c9ad8d629684ba176b9a36ff622fdee90b (from https://www.piwheels.org/simple/porous-media/) (requires-python:>=3.9)
2024-02-01T20:32:33,507   Skipping link: No binaries permitted for porous-media: https://www.piwheels.org/simple/porous-media/porous_media-0.1.1-py2.py3-none-any.whl#sha256=73590dad04a9e67fda010bcf97fe37b17fd0f4c3403cf4e475f9a2c3c2330626 (from https://www.piwheels.org/simple/porous-media/) (requires-python:>=3.9)
2024-02-01T20:32:33,508   Skipping link: No binaries permitted for porous-media: https://www.piwheels.org/simple/porous-media/porous_media-0.1.0-py2.py3-none-any.whl#sha256=92ec168e839a0e69eacf0b16c74c0afc9240778d9298a93c919a19459c34dea0 (from https://www.piwheels.org/simple/porous-media/) (requires-python:>=3.9)
2024-02-01T20:32:33,509 Skipping link: not a file: https://www.piwheels.org/simple/porous-media/
2024-02-01T20:32:33,509 Skipping link: not a file: https://pypi.org/simple/porous-media/
2024-02-01T20:32:33,529 Given no hashes to check 1 links for project 'porous-media': discarding no candidates
2024-02-01T20:32:33,547 Collecting porous-media==0.2.0
2024-02-01T20:32:33,549   Created temporary directory: /tmp/pip-unpack-ejfb08y9
2024-02-01T20:32:33,786   Downloading porous_media-0.2.0.tar.gz (1.1 MB)
2024-02-01T20:32:34,182   Added porous-media==0.2.0 from https://files.pythonhosted.org/packages/82/56/74f40b37724413a4b7e64ab051e0f3da1379115b3714c21f44db182532ca/porous_media-0.2.0.tar.gz to build tracker '/tmp/pip-build-tracker-uv236y7j'
2024-02-01T20:32:34,183   Running setup.py (path:/tmp/pip-wheel-cs8rr2jm/porous-media_c373a16bae0640f7b60726dbfa3f7367/setup.py) egg_info for package porous-media
2024-02-01T20:32:34,184   Created temporary directory: /tmp/pip-pip-egg-info-_1bt6br2
2024-02-01T20:32:34,185   Preparing metadata (setup.py): started
2024-02-01T20:32:34,186   Running command python setup.py egg_info
2024-02-01T20:32:35,372   running egg_info
2024-02-01T20:32:35,373   creating /tmp/pip-pip-egg-info-_1bt6br2/porous_media.egg-info
2024-02-01T20:32:35,397   writing /tmp/pip-pip-egg-info-_1bt6br2/porous_media.egg-info/PKG-INFO
2024-02-01T20:32:35,405   writing dependency_links to /tmp/pip-pip-egg-info-_1bt6br2/porous_media.egg-info/dependency_links.txt
2024-02-01T20:32:35,410   writing requirements to /tmp/pip-pip-egg-info-_1bt6br2/porous_media.egg-info/requires.txt
2024-02-01T20:32:35,411   writing top-level names to /tmp/pip-pip-egg-info-_1bt6br2/porous_media.egg-info/top_level.txt
2024-02-01T20:32:35,412   writing manifest file '/tmp/pip-pip-egg-info-_1bt6br2/porous_media.egg-info/SOURCES.txt'
2024-02-01T20:32:35,494   reading manifest file '/tmp/pip-pip-egg-info-_1bt6br2/porous_media.egg-info/SOURCES.txt'
2024-02-01T20:32:35,495   reading manifest template 'MANIFEST.in'
2024-02-01T20:32:35,516   adding license file 'LICENSE'
2024-02-01T20:32:35,519   writing manifest file '/tmp/pip-pip-egg-info-_1bt6br2/porous_media.egg-info/SOURCES.txt'
2024-02-01T20:32:35,628   Preparing metadata (setup.py): finished with status 'done'
2024-02-01T20:32:35,632   Source in /tmp/pip-wheel-cs8rr2jm/porous-media_c373a16bae0640f7b60726dbfa3f7367 has version 0.2.0, which satisfies requirement porous-media==0.2.0 from https://files.pythonhosted.org/packages/82/56/74f40b37724413a4b7e64ab051e0f3da1379115b3714c21f44db182532ca/porous_media-0.2.0.tar.gz
2024-02-01T20:32:35,633   Removed porous-media==0.2.0 from https://files.pythonhosted.org/packages/82/56/74f40b37724413a4b7e64ab051e0f3da1379115b3714c21f44db182532ca/porous_media-0.2.0.tar.gz from build tracker '/tmp/pip-build-tracker-uv236y7j'
2024-02-01T20:32:35,639 Created temporary directory: /tmp/pip-unpack-fh5j120i
2024-02-01T20:32:35,640 Created temporary directory: /tmp/pip-unpack-cffd5mh7
2024-02-01T20:32:35,688 Building wheels for collected packages: porous-media
2024-02-01T20:32:35,692   Created temporary directory: /tmp/pip-wheel-_e9ryf8x
2024-02-01T20:32:35,693   Building wheel for porous-media (setup.py): started
2024-02-01T20:32:35,694   Destination directory: /tmp/pip-wheel-_e9ryf8x
2024-02-01T20:32:35,694   Running command python setup.py bdist_wheel
2024-02-01T20:32:36,825   running bdist_wheel
2024-02-01T20:32:36,917   running build
2024-02-01T20:32:36,917   running build_py
2024-02-01T20:32:36,944   creating build
2024-02-01T20:32:36,944   creating build/lib
2024-02-01T20:32:36,945   creating build/lib/porous_media
2024-02-01T20:32:36,946   copying src/porous_media/log.py -> build/lib/porous_media
2024-02-01T20:32:36,948   copying src/porous_media/console.py -> build/lib/porous_media
2024-02-01T20:32:36,950   copying src/porous_media/__init__.py -> build/lib/porous_media
2024-02-01T20:32:36,952   creating build/lib/porous_media/data
2024-02-01T20:32:36,953   copying src/porous_media/data/xdmf_calculations.py -> build/lib/porous_media/data
2024-02-01T20:32:36,956   copying src/porous_media/data/xdmf_tools.py -> build/lib/porous_media/data
2024-02-01T20:32:36,958   copying src/porous_media/data/__init__.py -> build/lib/porous_media/data
2024-02-01T20:32:36,959   creating build/lib/porous_media/analyses
2024-02-01T20:32:36,960   copying src/porous_media/analyses/liver_variables.py -> build/lib/porous_media/analyses
2024-02-01T20:32:36,962   copying src/porous_media/analyses/__init__.py -> build/lib/porous_media/analyses
2024-02-01T20:32:36,964   creating build/lib/porous_media/visualization
2024-02-01T20:32:36,965   copying src/porous_media/visualization/video.py -> build/lib/porous_media/visualization
2024-02-01T20:32:36,967   copying src/porous_media/visualization/image_manipulation.py -> build/lib/porous_media/visualization
2024-02-01T20:32:36,968   copying src/porous_media/visualization/pyvista_visualization.py -> build/lib/porous_media/visualization
2024-02-01T20:32:36,970   copying src/porous_media/visualization/plots.py -> build/lib/porous_media/visualization
2024-02-01T20:32:36,972   copying src/porous_media/visualization/vtu_reader.py -> build/lib/porous_media/visualization
2024-02-01T20:32:36,973   copying src/porous_media/visualization/image_annotation.py -> build/lib/porous_media/visualization
2024-02-01T20:32:36,975   copying src/porous_media/visualization/__init__.py -> build/lib/porous_media/visualization
2024-02-01T20:32:36,977   creating build/lib/porous_media/febio
2024-02-01T20:32:36,978   copying src/porous_media/febio/__init__.py -> build/lib/porous_media/febio
2024-02-01T20:32:36,980   copying src/porous_media/febio/febio_manipulation.py -> build/lib/porous_media/febio
2024-02-01T20:32:36,982   creating build/lib/porous_media/mesh
2024-02-01T20:32:36,983   copying src/porous_media/mesh/mesh_tools.py -> build/lib/porous_media/mesh
2024-02-01T20:32:36,985   copying src/porous_media/mesh/mesh_zonation.py -> build/lib/porous_media/mesh
2024-02-01T20:32:36,987   copying src/porous_media/mesh/__init__.py -> build/lib/porous_media/mesh
2024-02-01T20:32:36,989   creating build/lib/porous_media/analyses/spt
2024-02-01T20:32:36,989   copying src/porous_media/analyses/spt/spt_plots_analysis.py -> build/lib/porous_media/analyses/spt
2024-02-01T20:32:36,992   copying src/porous_media/analyses/spt/spt_plots_geometry.py -> build/lib/porous_media/analyses/spt
2024-02-01T20:32:36,994   copying src/porous_media/analyses/spt/spt_data_processing.py -> build/lib/porous_media/analyses/spt
2024-02-01T20:32:36,995   copying src/porous_media/analyses/spt/__init__.py -> build/lib/porous_media/analyses/spt
2024-02-01T20:32:36,997   copying src/porous_media/analyses/spt/spt_information.py -> build/lib/porous_media/analyses/spt
2024-02-01T20:32:37,000   creating build/lib/porous_media/analyses/examples
2024-02-01T20:32:37,001   copying src/porous_media/analyses/examples/groups.py -> build/lib/porous_media/analyses/examples
2024-02-01T20:32:37,003   copying src/porous_media/analyses/examples/__init__.py -> build/lib/porous_media/analyses/examples
2024-02-01T20:32:37,005   creating build/lib/porous_media/analyses/simliva
2024-02-01T20:32:37,006   copying src/porous_media/analyses/simliva/simliva_example.py -> build/lib/porous_media/analyses/simliva
2024-02-01T20:32:37,007   copying src/porous_media/analyses/simliva/__init__.py -> build/lib/porous_media/analyses/simliva
2024-02-01T20:32:37,009   running egg_info
2024-02-01T20:32:37,064   writing src/porous_media.egg-info/PKG-INFO
2024-02-01T20:32:37,072   writing dependency_links to src/porous_media.egg-info/dependency_links.txt
2024-02-01T20:32:37,077   writing requirements to src/porous_media.egg-info/requires.txt
2024-02-01T20:32:37,078   writing top-level names to src/porous_media.egg-info/top_level.txt
2024-02-01T20:32:37,113   reading manifest file 'src/porous_media.egg-info/SOURCES.txt'
2024-02-01T20:32:37,116   reading manifest template 'MANIFEST.in'
2024-02-01T20:32:37,139   adding license file 'LICENSE'
2024-02-01T20:32:37,143   writing manifest file 'src/porous_media.egg-info/SOURCES.txt'
2024-02-01T20:32:37,145   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'porous_media.resources.images' is absent from the `packages` configuration.
2024-02-01T20:32:37,146   !!

2024-02-01T20:32:37,147           ********************************************************************************
2024-02-01T20:32:37,148           ############################
2024-02-01T20:32:37,148           # Package would be ignored #
2024-02-01T20:32:37,148           ############################
2024-02-01T20:32:37,149           Python recognizes 'porous_media.resources.images' as an importable package[^1],
2024-02-01T20:32:37,149           but it is absent from setuptools' `packages` configuration.

2024-02-01T20:32:37,150           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-01T20:32:37,151           package, please make sure that 'porous_media.resources.images' is explicitly added
2024-02-01T20:32:37,151           to the `packages` configuration field.

2024-02-01T20:32:37,152           Alternatively, you can also rely on setuptools' discovery methods
2024-02-01T20:32:37,152           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-01T20:32:37,153           instead of `find_packages(...)`/`find:`).

2024-02-01T20:32:37,154           You can read more about "package discovery" on setuptools documentation page:

2024-02-01T20:32:37,155           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-01T20:32:37,156           If you don't want 'porous_media.resources.images' to be distributed and are
2024-02-01T20:32:37,156           already explicitly excluding 'porous_media.resources.images' via
2024-02-01T20:32:37,156           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-01T20:32:37,157           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-01T20:32:37,157           combination with a more fine grained `package-data` configuration.

2024-02-01T20:32:37,158           You can read more about "package data files" on setuptools documentation page:

2024-02-01T20:32:37,159           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-01T20:32:37,161           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-01T20:32:37,162                 even if it does not contain any `.py` files.
2024-02-01T20:32:37,164                 On the other hand, currently there is no concept of package data
2024-02-01T20:32:37,165                 directory, all directories are treated like packages.
2024-02-01T20:32:37,165           ********************************************************************************

2024-02-01T20:32:37,166   !!
2024-02-01T20:32:37,167     check.warn(importable)
2024-02-01T20:32:37,167   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'porous_media.resources.vtk.vtk_single' is absent from the `packages` configuration.
2024-02-01T20:32:37,168   !!

2024-02-01T20:32:37,169           ********************************************************************************
2024-02-01T20:32:37,169           ############################
2024-02-01T20:32:37,170           # Package would be ignored #
2024-02-01T20:32:37,171           ############################
2024-02-01T20:32:37,173           Python recognizes 'porous_media.resources.vtk.vtk_single' as an importable package[^1],
2024-02-01T20:32:37,176           but it is absent from setuptools' `packages` configuration.

2024-02-01T20:32:37,177           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-01T20:32:37,178           package, please make sure that 'porous_media.resources.vtk.vtk_single' is explicitly added
2024-02-01T20:32:37,179           to the `packages` configuration field.

2024-02-01T20:32:37,180           Alternatively, you can also rely on setuptools' discovery methods
2024-02-01T20:32:37,181           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-01T20:32:37,181           instead of `find_packages(...)`/`find:`).

2024-02-01T20:32:37,184           You can read more about "package discovery" on setuptools documentation page:

2024-02-01T20:32:37,186           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-01T20:32:37,187           If you don't want 'porous_media.resources.vtk.vtk_single' to be distributed and are
2024-02-01T20:32:37,188           already explicitly excluding 'porous_media.resources.vtk.vtk_single' via
2024-02-01T20:32:37,188           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-01T20:32:37,189           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-01T20:32:37,191           combination with a more fine grained `package-data` configuration.

2024-02-01T20:32:37,193           You can read more about "package data files" on setuptools documentation page:

2024-02-01T20:32:37,195           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-01T20:32:37,198           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-01T20:32:37,198                 even if it does not contain any `.py` files.
2024-02-01T20:32:37,198                 On the other hand, currently there is no concept of package data
2024-02-01T20:32:37,199                 directory, all directories are treated like packages.
2024-02-01T20:32:37,199           ********************************************************************************

2024-02-01T20:32:37,201   !!
2024-02-01T20:32:37,201     check.warn(importable)
2024-02-01T20:32:37,202   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'porous_media.resources.vtk.vtk_timecourse' is absent from the `packages` configuration.
2024-02-01T20:32:37,204   !!

2024-02-01T20:32:37,206           ********************************************************************************
2024-02-01T20:32:37,207           ############################
2024-02-01T20:32:37,207           # Package would be ignored #
2024-02-01T20:32:37,208           ############################
2024-02-01T20:32:37,208           Python recognizes 'porous_media.resources.vtk.vtk_timecourse' as an importable package[^1],
2024-02-01T20:32:37,209           but it is absent from setuptools' `packages` configuration.

2024-02-01T20:32:37,210           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-01T20:32:37,210           package, please make sure that 'porous_media.resources.vtk.vtk_timecourse' is explicitly added
2024-02-01T20:32:37,211           to the `packages` configuration field.

2024-02-01T20:32:37,212           Alternatively, you can also rely on setuptools' discovery methods
2024-02-01T20:32:37,213           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-01T20:32:37,213           instead of `find_packages(...)`/`find:`).

2024-02-01T20:32:37,215           You can read more about "package discovery" on setuptools documentation page:

2024-02-01T20:32:37,216           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-01T20:32:37,218           If you don't want 'porous_media.resources.vtk.vtk_timecourse' to be distributed and are
2024-02-01T20:32:37,218           already explicitly excluding 'porous_media.resources.vtk.vtk_timecourse' via
2024-02-01T20:32:37,219           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-01T20:32:37,220           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-01T20:32:37,220           combination with a more fine grained `package-data` configuration.

2024-02-01T20:32:37,222           You can read more about "package data files" on setuptools documentation page:

2024-02-01T20:32:37,223           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-01T20:32:37,224           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-01T20:32:37,225                 even if it does not contain any `.py` files.
2024-02-01T20:32:37,225                 On the other hand, currently there is no concept of package data
2024-02-01T20:32:37,226                 directory, all directories are treated like packages.
2024-02-01T20:32:37,226           ********************************************************************************

2024-02-01T20:32:37,232   !!
2024-02-01T20:32:37,233     check.warn(importable)
2024-02-01T20:32:37,233   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'porous_media.resources.zonation' is absent from the `packages` configuration.
2024-02-01T20:32:37,234   !!

2024-02-01T20:32:37,235           ********************************************************************************
2024-02-01T20:32:37,235           ############################
2024-02-01T20:32:37,235           # Package would be ignored #
2024-02-01T20:32:37,236           ############################
2024-02-01T20:32:37,237           Python recognizes 'porous_media.resources.zonation' as an importable package[^1],
2024-02-01T20:32:37,238           but it is absent from setuptools' `packages` configuration.

2024-02-01T20:32:37,240           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-01T20:32:37,240           package, please make sure that 'porous_media.resources.zonation' is explicitly added
2024-02-01T20:32:37,241           to the `packages` configuration field.

2024-02-01T20:32:37,242           Alternatively, you can also rely on setuptools' discovery methods
2024-02-01T20:32:37,242           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-01T20:32:37,243           instead of `find_packages(...)`/`find:`).

2024-02-01T20:32:37,244           You can read more about "package discovery" on setuptools documentation page:

2024-02-01T20:32:37,245           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-01T20:32:37,246           If you don't want 'porous_media.resources.zonation' to be distributed and are
2024-02-01T20:32:37,247           already explicitly excluding 'porous_media.resources.zonation' via
2024-02-01T20:32:37,247           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-01T20:32:37,248           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-01T20:32:37,248           combination with a more fine grained `package-data` configuration.

2024-02-01T20:32:37,249           You can read more about "package data files" on setuptools documentation page:

2024-02-01T20:32:37,251           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-01T20:32:37,252           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-01T20:32:37,253                 even if it does not contain any `.py` files.
2024-02-01T20:32:37,253                 On the other hand, currently there is no concept of package data
2024-02-01T20:32:37,254                 directory, all directories are treated like packages.
2024-02-01T20:32:37,255           ********************************************************************************

2024-02-01T20:32:37,256   !!
2024-02-01T20:32:37,257     check.warn(importable)
2024-02-01T20:32:37,257   copying src/porous_media/py.typed -> build/lib/porous_media
2024-02-01T20:32:37,258   creating build/lib/porous_media/resources
2024-02-01T20:32:37,258   creating build/lib/porous_media/resources/images
2024-02-01T20:32:37,259   copying src/porous_media/resources/images/mesh_zonation.png -> build/lib/porous_media/resources/images
2024-02-01T20:32:37,259   creating build/lib/porous_media/resources/vtk
2024-02-01T20:32:37,260   creating build/lib/porous_media/resources/vtk/vtk_single
2024-02-01T20:32:37,261   copying src/porous_media/resources/vtk/vtk_single/lobule_zonation_pattern.t0022.vtk -> build/lib/porous_media/resources/vtk/vtk_single
2024-02-01T20:32:37,262   creating build/lib/porous_media/resources/vtk/vtk_timecourse
2024-02-01T20:32:37,262   copying src/porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0000.vtk -> build/lib/porous_media/resources/vtk/vtk_timecourse
2024-02-01T20:32:37,263   copying src/porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0008.vtk -> build/lib/porous_media/resources/vtk/vtk_timecourse
2024-02-01T20:32:37,263   copying src/porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0022.vtk -> build/lib/porous_media/resources/vtk/vtk_timecourse
2024-02-01T20:32:37,263   creating build/lib/porous_media/resources/zonation
2024-02-01T20:32:37,264   copying src/porous_media/resources/zonation/mesh_zonation.h5 -> build/lib/porous_media/resources/zonation
2024-02-01T20:32:37,264   copying src/porous_media/resources/zonation/mesh_zonation.vtk -> build/lib/porous_media/resources/zonation
2024-02-01T20:32:37,265   copying src/porous_media/resources/zonation/mesh_zonation.xdmf -> build/lib/porous_media/resources/zonation
2024-02-01T20:32:37,265   copying src/porous_media/resources/zonation/mesh_zonation_lobulus.vtk -> build/lib/porous_media/resources/zonation
2024-02-01T20:32:37,266   copying src/porous_media/data/flow_dependency.png -> build/lib/porous_media/data
2024-02-01T20:32:37,266   copying src/porous_media/analyses/spt/MII-symposium.md -> build/lib/porous_media/analyses/spt
2024-02-01T20:32:37,267   copying src/porous_media/analyses/spt/spt.md -> build/lib/porous_media/analyses/spt
2024-02-01T20:32:37,280   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-02-01T20:32:37,281   !!

2024-02-01T20:32:37,282           ********************************************************************************
2024-02-01T20:32:37,282           Please avoid running ``setup.py`` directly.
2024-02-01T20:32:37,283           Instead, use pypa/build, pypa/installer or other
2024-02-01T20:32:37,284           standards-based tools.

2024-02-01T20:32:37,285           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-02-01T20:32:37,285           ********************************************************************************

2024-02-01T20:32:37,286   !!
2024-02-01T20:32:37,287     self.initialize_options()
2024-02-01T20:32:37,306   installing to build/bdist.linux-armv7l/wheel
2024-02-01T20:32:37,307   running install
2024-02-01T20:32:37,330   running install_lib
2024-02-01T20:32:37,354   creating build/bdist.linux-armv7l
2024-02-01T20:32:37,355   creating build/bdist.linux-armv7l/wheel
2024-02-01T20:32:37,356   creating build/bdist.linux-armv7l/wheel/porous_media
2024-02-01T20:32:37,358   creating build/bdist.linux-armv7l/wheel/porous_media/data
2024-02-01T20:32:37,359   copying build/lib/porous_media/data/flow_dependency.png -> build/bdist.linux-armv7l/wheel/porous_media/data
2024-02-01T20:32:37,365   copying build/lib/porous_media/data/xdmf_calculations.py -> build/bdist.linux-armv7l/wheel/porous_media/data
2024-02-01T20:32:37,367   copying build/lib/porous_media/data/xdmf_tools.py -> build/bdist.linux-armv7l/wheel/porous_media/data
2024-02-01T20:32:37,369   copying build/lib/porous_media/data/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media/data
2024-02-01T20:32:37,373   copying build/lib/porous_media/py.typed -> build/bdist.linux-armv7l/wheel/porous_media
2024-02-01T20:32:37,375   creating build/bdist.linux-armv7l/wheel/porous_media/resources
2024-02-01T20:32:37,377   creating build/bdist.linux-armv7l/wheel/porous_media/resources/images
2024-02-01T20:32:37,378   copying build/lib/porous_media/resources/images/mesh_zonation.png -> build/bdist.linux-armv7l/wheel/porous_media/resources/images
2024-02-01T20:32:37,386   creating build/bdist.linux-armv7l/wheel/porous_media/resources/vtk
2024-02-01T20:32:37,388   creating build/bdist.linux-armv7l/wheel/porous_media/resources/vtk/vtk_timecourse
2024-02-01T20:32:37,389   copying build/lib/porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0008.vtk -> build/bdist.linux-armv7l/wheel/porous_media/resources/vtk/vtk_timecourse
2024-02-01T20:32:37,398   copying build/lib/porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0022.vtk -> build/bdist.linux-armv7l/wheel/porous_media/resources/vtk/vtk_timecourse
2024-02-01T20:32:37,406   copying build/lib/porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0000.vtk -> build/bdist.linux-armv7l/wheel/porous_media/resources/vtk/vtk_timecourse
2024-02-01T20:32:37,412   creating build/bdist.linux-armv7l/wheel/porous_media/resources/vtk/vtk_single
2024-02-01T20:32:37,412   copying build/lib/porous_media/resources/vtk/vtk_single/lobule_zonation_pattern.t0022.vtk -> build/bdist.linux-armv7l/wheel/porous_media/resources/vtk/vtk_single
2024-02-01T20:32:37,423   creating build/bdist.linux-armv7l/wheel/porous_media/resources/zonation
2024-02-01T20:32:37,424   copying build/lib/porous_media/resources/zonation/mesh_zonation.xdmf -> build/bdist.linux-armv7l/wheel/porous_media/resources/zonation
2024-02-01T20:32:37,426   copying build/lib/porous_media/resources/zonation/mesh_zonation_lobulus.vtk -> build/bdist.linux-armv7l/wheel/porous_media/resources/zonation
2024-02-01T20:32:37,434   copying build/lib/porous_media/resources/zonation/mesh_zonation.h5 -> build/bdist.linux-armv7l/wheel/porous_media/resources/zonation
2024-02-01T20:32:37,437   copying build/lib/porous_media/resources/zonation/mesh_zonation.vtk -> build/bdist.linux-armv7l/wheel/porous_media/resources/zonation
2024-02-01T20:32:37,440   creating build/bdist.linux-armv7l/wheel/porous_media/analyses
2024-02-01T20:32:37,441   copying build/lib/porous_media/analyses/liver_variables.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses
2024-02-01T20:32:37,444   creating build/bdist.linux-armv7l/wheel/porous_media/analyses/spt
2024-02-01T20:32:37,445   copying build/lib/porous_media/analyses/spt/spt.md -> build/bdist.linux-armv7l/wheel/porous_media/analyses/spt
2024-02-01T20:32:37,446   copying build/lib/porous_media/analyses/spt/spt_plots_analysis.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses/spt
2024-02-01T20:32:37,449   copying build/lib/porous_media/analyses/spt/MII-symposium.md -> build/bdist.linux-armv7l/wheel/porous_media/analyses/spt
2024-02-01T20:32:37,450   copying build/lib/porous_media/analyses/spt/spt_plots_geometry.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses/spt
2024-02-01T20:32:37,453   copying build/lib/porous_media/analyses/spt/spt_data_processing.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses/spt
2024-02-01T20:32:37,454   copying build/lib/porous_media/analyses/spt/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses/spt
2024-02-01T20:32:37,456   copying build/lib/porous_media/analyses/spt/spt_information.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses/spt
2024-02-01T20:32:37,459   creating build/bdist.linux-armv7l/wheel/porous_media/analyses/examples
2024-02-01T20:32:37,460   copying build/lib/porous_media/analyses/examples/groups.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses/examples
2024-02-01T20:32:37,462   copying build/lib/porous_media/analyses/examples/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses/examples
2024-02-01T20:32:37,463   copying build/lib/porous_media/analyses/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses
2024-02-01T20:32:37,466   creating build/bdist.linux-armv7l/wheel/porous_media/analyses/simliva
2024-02-01T20:32:37,467   copying build/lib/porous_media/analyses/simliva/simliva_example.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses/simliva
2024-02-01T20:32:37,469   copying build/lib/porous_media/analyses/simliva/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses/simliva
2024-02-01T20:32:37,470   copying build/lib/porous_media/log.py -> build/bdist.linux-armv7l/wheel/porous_media
2024-02-01T20:32:37,473   creating build/bdist.linux-armv7l/wheel/porous_media/visualization
2024-02-01T20:32:37,474   copying build/lib/porous_media/visualization/video.py -> build/bdist.linux-armv7l/wheel/porous_media/visualization
2024-02-01T20:32:37,476   copying build/lib/porous_media/visualization/image_manipulation.py -> build/bdist.linux-armv7l/wheel/porous_media/visualization
2024-02-01T20:32:37,478   copying build/lib/porous_media/visualization/pyvista_visualization.py -> build/bdist.linux-armv7l/wheel/porous_media/visualization
2024-02-01T20:32:37,480   copying build/lib/porous_media/visualization/plots.py -> build/bdist.linux-armv7l/wheel/porous_media/visualization
2024-02-01T20:32:37,482   copying build/lib/porous_media/visualization/vtu_reader.py -> build/bdist.linux-armv7l/wheel/porous_media/visualization
2024-02-01T20:32:37,484   copying build/lib/porous_media/visualization/image_annotation.py -> build/bdist.linux-armv7l/wheel/porous_media/visualization
2024-02-01T20:32:37,486   copying build/lib/porous_media/visualization/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media/visualization
2024-02-01T20:32:37,488   creating build/bdist.linux-armv7l/wheel/porous_media/febio
2024-02-01T20:32:37,489   copying build/lib/porous_media/febio/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media/febio
2024-02-01T20:32:37,490   copying build/lib/porous_media/febio/febio_manipulation.py -> build/bdist.linux-armv7l/wheel/porous_media/febio
2024-02-01T20:32:37,492   copying build/lib/porous_media/console.py -> build/bdist.linux-armv7l/wheel/porous_media
2024-02-01T20:32:37,494   creating build/bdist.linux-armv7l/wheel/porous_media/mesh
2024-02-01T20:32:37,495   copying build/lib/porous_media/mesh/mesh_tools.py -> build/bdist.linux-armv7l/wheel/porous_media/mesh
2024-02-01T20:32:37,498   copying build/lib/porous_media/mesh/mesh_zonation.py -> build/bdist.linux-armv7l/wheel/porous_media/mesh
2024-02-01T20:32:37,500   copying build/lib/porous_media/mesh/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media/mesh
2024-02-01T20:32:37,502   copying build/lib/porous_media/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media
2024-02-01T20:32:37,504   running install_egg_info
2024-02-01T20:32:37,536   Copying src/porous_media.egg-info to build/bdist.linux-armv7l/wheel/porous_media-0.2.0-py3.11.egg-info
2024-02-01T20:32:37,548   running install_scripts
2024-02-01T20:32:37,570   creating build/bdist.linux-armv7l/wheel/porous_media-0.2.0.dist-info/WHEEL
2024-02-01T20:32:37,572   creating '/tmp/pip-wheel-_e9ryf8x/porous_media-0.2.0-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-02-01T20:32:37,575   adding 'porous_media/__init__.py'
2024-02-01T20:32:37,576   adding 'porous_media/console.py'
2024-02-01T20:32:37,577   adding 'porous_media/log.py'
2024-02-01T20:32:37,578   adding 'porous_media/py.typed'
2024-02-01T20:32:37,580   adding 'porous_media/analyses/__init__.py'
2024-02-01T20:32:37,581   adding 'porous_media/analyses/liver_variables.py'
2024-02-01T20:32:37,583   adding 'porous_media/analyses/examples/__init__.py'
2024-02-01T20:32:37,585   adding 'porous_media/analyses/examples/groups.py'
2024-02-01T20:32:37,586   adding 'porous_media/analyses/simliva/__init__.py'
2024-02-01T20:32:37,588   adding 'porous_media/analyses/simliva/simliva_example.py'
2024-02-01T20:32:37,589   adding 'porous_media/analyses/spt/MII-symposium.md'
2024-02-01T20:32:37,591   adding 'porous_media/analyses/spt/__init__.py'
2024-02-01T20:32:37,592   adding 'porous_media/analyses/spt/spt.md'
2024-02-01T20:32:37,593   adding 'porous_media/analyses/spt/spt_data_processing.py'
2024-02-01T20:32:37,594   adding 'porous_media/analyses/spt/spt_information.py'
2024-02-01T20:32:37,596   adding 'porous_media/analyses/spt/spt_plots_analysis.py'
2024-02-01T20:32:37,598   adding 'porous_media/analyses/spt/spt_plots_geometry.py'
2024-02-01T20:32:37,600   adding 'porous_media/data/__init__.py'
2024-02-01T20:32:37,624   adding 'porous_media/data/flow_dependency.png'
2024-02-01T20:32:37,627   adding 'porous_media/data/xdmf_calculations.py'
2024-02-01T20:32:37,629   adding 'porous_media/data/xdmf_tools.py'
2024-02-01T20:32:37,631   adding 'porous_media/febio/__init__.py'
2024-02-01T20:32:37,632   adding 'porous_media/febio/febio_manipulation.py'
2024-02-01T20:32:37,633   adding 'porous_media/mesh/__init__.py'
2024-02-01T20:32:37,634   adding 'porous_media/mesh/mesh_tools.py'
2024-02-01T20:32:37,636   adding 'porous_media/mesh/mesh_zonation.py'
2024-02-01T20:32:37,677   adding 'porous_media/resources/images/mesh_zonation.png'
2024-02-01T20:32:37,761   adding 'porous_media/resources/vtk/vtk_single/lobule_zonation_pattern.t0022.vtk'
2024-02-01T20:32:37,778   adding 'porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0000.vtk'
2024-02-01T20:32:37,861   adding 'porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0008.vtk'
2024-02-01T20:32:37,944   adding 'porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0022.vtk'
2024-02-01T20:32:37,950   adding 'porous_media/resources/zonation/mesh_zonation.h5'
2024-02-01T20:32:37,959   adding 'porous_media/resources/zonation/mesh_zonation.vtk'
2024-02-01T20:32:37,961   adding 'porous_media/resources/zonation/mesh_zonation.xdmf'
2024-02-01T20:32:38,056   adding 'porous_media/resources/zonation/mesh_zonation_lobulus.vtk'
2024-02-01T20:32:38,061   adding 'porous_media/visualization/__init__.py'
2024-02-01T20:32:38,062   adding 'porous_media/visualization/image_annotation.py'
2024-02-01T20:32:38,063   adding 'porous_media/visualization/image_manipulation.py'
2024-02-01T20:32:38,064   adding 'porous_media/visualization/plots.py'
2024-02-01T20:32:38,066   adding 'porous_media/visualization/pyvista_visualization.py'
2024-02-01T20:32:38,068   adding 'porous_media/visualization/video.py'
2024-02-01T20:32:38,069   adding 'porous_media/visualization/vtu_reader.py'
2024-02-01T20:32:38,071   adding 'porous_media-0.2.0.dist-info/LICENSE'
2024-02-01T20:32:38,073   adding 'porous_media-0.2.0.dist-info/METADATA'
2024-02-01T20:32:38,074   adding 'porous_media-0.2.0.dist-info/WHEEL'
2024-02-01T20:32:38,075   adding 'porous_media-0.2.0.dist-info/top_level.txt'
2024-02-01T20:32:38,076   adding 'porous_media-0.2.0.dist-info/zip-safe'
2024-02-01T20:32:38,077   adding 'porous_media-0.2.0.dist-info/RECORD'
2024-02-01T20:32:38,090   removing build/bdist.linux-armv7l/wheel
2024-02-01T20:32:38,217   Building wheel for porous-media (setup.py): finished with status 'done'
2024-02-01T20:32:38,231   Created wheel for porous-media: filename=porous_media-0.2.0-py2.py3-none-any.whl size=1131006 sha256=273cc6d7bb546aad7740d5d1e6287eca6fb4241e40636dacfbbaf17f813da643
2024-02-01T20:32:38,232   Stored in directory: /tmp/pip-ephem-wheel-cache-te6x3lj1/wheels/ad/92/d3/56703a0d8c8e64e0e37b461c96ebb0cb5547551e00d255c8fd
2024-02-01T20:32:38,246 Successfully built porous-media
2024-02-01T20:32:38,285 Removed build tracker: '/tmp/pip-build-tracker-uv236y7j'