2024-02-06T16:31:45,775 Created temporary directory: /tmp/pip-build-tracker-hqe8d8b6 2024-02-06T16:31:45,776 Initialized build tracking at /tmp/pip-build-tracker-hqe8d8b6 2024-02-06T16:31:45,776 Created build tracker: /tmp/pip-build-tracker-hqe8d8b6 2024-02-06T16:31:45,777 Entered build tracker: /tmp/pip-build-tracker-hqe8d8b6 2024-02-06T16:31:45,777 Created temporary directory: /tmp/pip-wheel-4fii01g0 2024-02-06T16:31:45,781 Created temporary directory: /tmp/pip-ephem-wheel-cache-yocep8s1 2024-02-06T16:31:45,805 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-02-06T16:31:45,808 2 location(s) to search for versions of bioen: 2024-02-06T16:31:45,808 * https://pypi.org/simple/bioen/ 2024-02-06T16:31:45,808 * https://www.piwheels.org/simple/bioen/ 2024-02-06T16:31:45,809 Fetching project page and analyzing links: https://pypi.org/simple/bioen/ 2024-02-06T16:31:45,809 Getting page https://pypi.org/simple/bioen/ 2024-02-06T16:31:45,811 Found index url https://pypi.org/simple/ 2024-02-06T16:31:45,863 Fetched page https://pypi.org/simple/bioen/ as application/vnd.pypi.simple.v1+json 2024-02-06T16:31:45,867 Skipping link: No binaries permitted for bioen: https://files.pythonhosted.org/packages/e8/72/d84e7a1948bb08b25c83c740546027d27b3daa601bc4eb471aed6e6d99c6/bioen-0.1.2-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/bioen/) 2024-02-06T16:31:45,867 Skipping link: No binaries permitted for bioen: https://files.pythonhosted.org/packages/65/24/a8ff33f261d69c5ca8b39f13b31076c1976a995fdb3f443d03672f993258/bioen-0.1.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/bioen/) 2024-02-06T16:31:45,867 Skipping link: No binaries permitted for bioen: https://files.pythonhosted.org/packages/15/37/7c6d0827cefd20315d03ce77f1c1f70fb28caa993ca3bc4aa3b5b77e4c67/bioen-0.1.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/bioen/) 2024-02-06T16:31:45,868 Skipping link: No binaries permitted for bioen: https://files.pythonhosted.org/packages/d4/d6/5e6c5ec45b33ee1174d6442ea65f0bf94af29d6121f1cc1d84242bbd8fde/bioen-0.1.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/bioen/) 2024-02-06T16:31:45,868 Found link https://files.pythonhosted.org/packages/7a/f9/8c82f09b480376a64815fac6482104760ec7c29af14c064cfaa365c433d5/bioen-0.1.2.tar.gz (from https://pypi.org/simple/bioen/), version: 0.1.2 2024-02-06T16:31:45,868 Skipping link: No binaries permitted for bioen: https://files.pythonhosted.org/packages/28/5c/a6fc89094a37b9bd3097847ab0e228def42e32aada8096f8a9478c34fcf1/bioen-0.1.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/bioen/) 2024-02-06T16:31:45,868 Skipping link: No binaries permitted for bioen: https://files.pythonhosted.org/packages/67/0b/76663e23d81a98d85cb6a4b9d5d676cc7e3ddde3621c3c31452935381834/bioen-0.1.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/bioen/) 2024-02-06T16:31:45,869 Skipping link: No binaries permitted for bioen: https://files.pythonhosted.org/packages/86/a6/7971df1b5697261f947f99342cd713d7c457c84356c6ffbb12fe8ba89007/bioen-0.1.3-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/bioen/) 2024-02-06T16:31:45,869 Skipping link: No binaries permitted for bioen: https://files.pythonhosted.org/packages/8b/ba/ded1f84f2bb2162ba56f4809864e4718890b0004df0d14b4d0683877638a/bioen-0.1.3-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/bioen/) 2024-02-06T16:31:45,869 Skipping link: No binaries permitted for bioen: https://files.pythonhosted.org/packages/d5/6c/f9a76168b860d753e3f7ebd2665db4a418c91f22ca60c0a6ebfb6b06c5cf/bioen-0.1.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/bioen/) 2024-02-06T16:31:45,869 Skipping link: No binaries permitted for bioen: https://files.pythonhosted.org/packages/ef/87/b076765647bde5c15e9cff765fd412a9bbb0f2a6e21bef3c589767da44a6/bioen-0.1.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/bioen/) 2024-02-06T16:31:45,870 Skipping link: No binaries permitted for bioen: https://files.pythonhosted.org/packages/ae/26/385ccb4b73bf6362e571e549a9e65fe205426c79f15bc2de3d3663901a58/bioen-0.1.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/bioen/) 2024-02-06T16:31:45,870 Found link https://files.pythonhosted.org/packages/7b/74/15dc29e3d9f4e6a5ebc47903f7214c838be99925f3d49720914489130a45/bioen-0.1.3.tar.gz (from https://pypi.org/simple/bioen/), version: 0.1.3 2024-02-06T16:31:45,870 Fetching project page and analyzing links: https://www.piwheels.org/simple/bioen/ 2024-02-06T16:31:45,871 Getting page https://www.piwheels.org/simple/bioen/ 2024-02-06T16:31:45,872 Found index url https://www.piwheels.org/simple/ 2024-02-06T16:31:45,940 Fetched page https://www.piwheels.org/simple/bioen/ as text/html 2024-02-06T16:31:45,941 Skipping link: not a file: https://www.piwheels.org/simple/bioen/ 2024-02-06T16:31:45,941 Skipping link: not a file: https://pypi.org/simple/bioen/ 2024-02-06T16:31:45,959 Given no hashes to check 1 links for project 'bioen': discarding no candidates 2024-02-06T16:31:45,975 Collecting bioen==0.1.3 2024-02-06T16:31:45,977 Created temporary directory: /tmp/pip-unpack-xjwlf4xh 2024-02-06T16:31:46,025 Downloading bioen-0.1.3.tar.gz (5.8 MB) 2024-02-06T16:31:47,202 Added bioen==0.1.3 from https://files.pythonhosted.org/packages/7b/74/15dc29e3d9f4e6a5ebc47903f7214c838be99925f3d49720914489130a45/bioen-0.1.3.tar.gz to build tracker '/tmp/pip-build-tracker-hqe8d8b6' 2024-02-06T16:31:47,203 Running setup.py (path:/tmp/pip-wheel-4fii01g0/bioen_3149a7a5a68a43a8a0374e4620d622b7/setup.py) egg_info for package bioen 2024-02-06T16:31:47,204 Created temporary directory: /tmp/pip-pip-egg-info-xgi9y189 2024-02-06T16:31:47,204 Preparing metadata (setup.py): started 2024-02-06T16:31:47,205 Running command python setup.py egg_info 2024-02-06T16:31:50,995 Traceback (most recent call last): 2024-02-06T16:31:50,996 File "", line 2, in 2024-02-06T16:31:50,997 File "", line 34, in 2024-02-06T16:31:50,997 File "/tmp/pip-wheel-4fii01g0/bioen_3149a7a5a68a43a8a0374e4620d622b7/setup.py", line 253, in 2024-02-06T16:31:50,999 reqs = [l.strip() for l in open(BIOEN_REQUIREMENTS_TXT).readlines()] 2024-02-06T16:31:50,999 FileNotFoundError: [Errno 2] No such file or directory: 'requirements.txt' 2024-02-06T16:31:50,999 Warning: liblbfgs is not used! 2024-02-06T16:31:50,999 --- 2024-02-06T16:31:51,000 bioen v0.1.3 2024-02-06T16:31:51,000 BIOEN_OPENMP : False 2024-02-06T16:31:51,000 BIOEN_FAST_CFLAGS : True 2024-02-06T16:31:51,000 CFLAGS : ['-O3', '-fPIC', '-Wno-unknown-pragmas', '-march=native', '-std=gnu99', '-DENABLE_GSL'] 2024-02-06T16:31:51,000 LDFLAGS : ['-lm', '-lgsl', '-lgslcblas'] 2024-02-06T16:31:51,000 RPATH : True 2024-02-06T16:31:51,000 --- 2024-02-06T16:31:51,086 ERROR: python setup.py egg_info exited with 1 2024-02-06T16:31:51,103 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2024-02-06T16:31:51,103 exec(compile('"'"''"'"''"'"' 2024-02-06T16:31:51,103 # This is -- a caller that pip uses to run setup.py 2024-02-06T16:31:51,103 # 2024-02-06T16:31:51,103 # - It imports setuptools before invoking setup.py, to enable projects that directly 2024-02-06T16:31:51,103 # import from `distutils.core` to work with newer packaging standards. 2024-02-06T16:31:51,103 # - It provides a clear error message when setuptools is not installed. 2024-02-06T16:31:51,103 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2024-02-06T16:31:51,103 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2024-02-06T16:31:51,103 # manifest_maker: standard file '"'"'-c'"'"' not found". 2024-02-06T16:31:51,103 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2024-02-06T16:31:51,103 import os, sys, tokenize 2024-02-06T16:31:51,103 2024-02-06T16:31:51,103 try: 2024-02-06T16:31:51,103 import setuptools 2024-02-06T16:31:51,103 except ImportError as error: 2024-02-06T16:31:51,103 print( 2024-02-06T16:31:51,103 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2024-02-06T16:31:51,103 "the build environment.", 2024-02-06T16:31:51,103 file=sys.stderr, 2024-02-06T16:31:51,103 ) 2024-02-06T16:31:51,103 sys.exit(1) 2024-02-06T16:31:51,103 2024-02-06T16:31:51,103 __file__ = %r 2024-02-06T16:31:51,103 sys.argv[0] = __file__ 2024-02-06T16:31:51,103 2024-02-06T16:31:51,103 if os.path.exists(__file__): 2024-02-06T16:31:51,103 filename = __file__ 2024-02-06T16:31:51,103 with tokenize.open(__file__) as f: 2024-02-06T16:31:51,103 setup_py_code = f.read() 2024-02-06T16:31:51,103 else: 2024-02-06T16:31:51,103 filename = "" 2024-02-06T16:31:51,103 setup_py_code = "from setuptools import setup; setup()" 2024-02-06T16:31:51,103 2024-02-06T16:31:51,103 exec(compile(setup_py_code, filename, "exec")) 2024-02-06T16:31:51,103 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-4fii01g0/bioen_3149a7a5a68a43a8a0374e4620d622b7/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-xgi9y189[/] 2024-02-06T16:31:51,103 [bold magenta]cwd[/]: /tmp/pip-wheel-4fii01g0/bioen_3149a7a5a68a43a8a0374e4620d622b7/ 2024-02-06T16:31:51,104 Preparing metadata (setup.py): finished with status 'error' 2024-02-06T16:31:51,105 ERROR: metadata generation failed 2024-02-06T16:31:51,111 Exception information: 2024-02-06T16:31:51,111 Traceback (most recent call last): 2024-02-06T16:31:51,111 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata 2024-02-06T16:31:51,111 call_subprocess( 2024-02-06T16:31:51,111 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess 2024-02-06T16:31:51,111 raise error 2024-02-06T16:31:51,111 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2024-02-06T16:31:51,111 2024-02-06T16:31:51,111 The above exception was the direct cause of the following exception: 2024-02-06T16:31:51,111 2024-02-06T16:31:51,111 Traceback (most recent call last): 2024-02-06T16:31:51,111 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2024-02-06T16:31:51,111 status = run_func(*args) 2024-02-06T16:31:51,111 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 245, in wrapper 2024-02-06T16:31:51,111 return func(self, options, args) 2024-02-06T16:31:51,111 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 147, in run 2024-02-06T16:31:51,111 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2024-02-06T16:31:51,111 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/resolution/resolvelib/resolver.py", line 95, in resolve 2024-02-06T16:31:51,111 result = self._result = resolver.resolve( 2024-02-06T16:31:51,111 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_vendor/resolvelib/resolvers.py", line 546, in resolve 2024-02-06T16:31:51,111 state = resolution.resolve(requirements, max_rounds=max_rounds) 2024-02-06T16:31:51,111 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_vendor/resolvelib/resolvers.py", line 397, in resolve 2024-02-06T16:31:51,111 self._add_to_criteria(self.state.criteria, r, parent=None) 2024-02-06T16:31:51,111 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _add_to_criteria 2024-02-06T16:31:51,111 if not criterion.candidates: 2024-02-06T16:31:51,111 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_vendor/resolvelib/structs.py", line 156, in __bool__ 2024-02-06T16:31:51,111 return bool(self._sequence) 2024-02-06T16:31:51,111 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__ 2024-02-06T16:31:51,111 return any(self) 2024-02-06T16:31:51,111 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in 2024-02-06T16:31:51,111 return (c for c in iterator if id(c) not in self._incompatible_ids) 2024-02-06T16:31:51,111 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built 2024-02-06T16:31:51,111 candidate = func() 2024-02-06T16:31:51,111 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/resolution/resolvelib/factory.py", line 211, in _make_candidate_from_link 2024-02-06T16:31:51,111 self._link_candidate_cache[link] = LinkCandidate( 2024-02-06T16:31:51,111 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/resolution/resolvelib/candidates.py", line 293, in __init__ 2024-02-06T16:31:51,111 super().__init__( 2024-02-06T16:31:51,111 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/resolution/resolvelib/candidates.py", line 156, in __init__ 2024-02-06T16:31:51,111 self.dist = self._prepare() 2024-02-06T16:31:51,111 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/resolution/resolvelib/candidates.py", line 225, in _prepare 2024-02-06T16:31:51,111 dist = self._prepare_distribution() 2024-02-06T16:31:51,111 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/resolution/resolvelib/candidates.py", line 304, in _prepare_distribution 2024-02-06T16:31:51,111 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2024-02-06T16:31:51,111 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/operations/prepare.py", line 525, in prepare_linked_requirement 2024-02-06T16:31:51,111 return self._prepare_linked_requirement(req, parallel_builds) 2024-02-06T16:31:51,111 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/operations/prepare.py", line 640, in _prepare_linked_requirement 2024-02-06T16:31:51,111 dist = _get_prepared_distribution( 2024-02-06T16:31:51,111 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/operations/prepare.py", line 71, in _get_prepared_distribution 2024-02-06T16:31:51,111 abstract_dist.prepare_distribution_metadata( 2024-02-06T16:31:51,111 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/distributions/sdist.py", line 67, in prepare_distribution_metadata 2024-02-06T16:31:51,111 self.req.prepare_metadata() 2024-02-06T16:31:51,111 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/req/req_install.py", line 583, in prepare_metadata 2024-02-06T16:31:51,111 self.metadata_directory = generate_metadata_legacy( 2024-02-06T16:31:51,111 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata 2024-02-06T16:31:51,111 raise MetadataGenerationFailed(package_details=details) from error 2024-02-06T16:31:51,111 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2024-02-06T16:31:51,121 Removed bioen==0.1.3 from https://files.pythonhosted.org/packages/7b/74/15dc29e3d9f4e6a5ebc47903f7214c838be99925f3d49720914489130a45/bioen-0.1.3.tar.gz from build tracker '/tmp/pip-build-tracker-hqe8d8b6' 2024-02-06T16:31:51,122 Removed build tracker: '/tmp/pip-build-tracker-hqe8d8b6'