2024-02-06T16:32:38,398 Created temporary directory: /tmp/pip-build-tracker-s4_7b7so 2024-02-06T16:32:38,399 Initialized build tracking at /tmp/pip-build-tracker-s4_7b7so 2024-02-06T16:32:38,400 Created build tracker: /tmp/pip-build-tracker-s4_7b7so 2024-02-06T16:32:38,400 Entered build tracker: /tmp/pip-build-tracker-s4_7b7so 2024-02-06T16:32:38,400 Created temporary directory: /tmp/pip-wheel-v9iuvpcy 2024-02-06T16:32:38,405 Created temporary directory: /tmp/pip-ephem-wheel-cache-577sdfy7 2024-02-06T16:32:38,429 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-02-06T16:32:38,433 2 location(s) to search for versions of nngt: 2024-02-06T16:32:38,433 * https://pypi.org/simple/nngt/ 2024-02-06T16:32:38,433 * https://www.piwheels.org/simple/nngt/ 2024-02-06T16:32:38,433 Fetching project page and analyzing links: https://pypi.org/simple/nngt/ 2024-02-06T16:32:38,433 Getting page https://pypi.org/simple/nngt/ 2024-02-06T16:32:38,435 Found index url https://pypi.org/simple/ 2024-02-06T16:32:38,487 Fetched page https://pypi.org/simple/nngt/ as application/vnd.pypi.simple.v1+json 2024-02-06T16:32:38,520 Found link https://files.pythonhosted.org/packages/d4/c5/b906ebd42bcd83fd06aa93bee7d0ca74e68e924a64d55f0a8065080a06b6/nngt-0.9.dev1.tar.gz (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4), version: 0.9.dev1 2024-02-06T16:32:38,520 Found link https://files.pythonhosted.org/packages/3e/eb/cbaac25c605476b563f71885c04d6c62be1164c947d00436d92c566cefc9/nngt-0.9.dev2.tar.gz (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4), version: 0.9.dev2 2024-02-06T16:32:38,521 Found link https://files.pythonhosted.org/packages/0b/6b/811cdf28df1390d60d04693d58505fe6cf7a0167968bb0be799735ab2ed0/nngt-0.9.dev3.tar.gz (from https://pypi.org/simple/nngt/), version: 0.9.dev3 2024-02-06T16:32:38,521 Found link https://files.pythonhosted.org/packages/29/43/dcf9b9c68ba056ebaf2a8c5f5aac61251e6d426874bb80baa5fc4f170c97/nngt-1.0.0a1.tar.gz (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4), version: 1.0.0a1 2024-02-06T16:32:38,522 Found link https://files.pythonhosted.org/packages/c9/7d/e052c3a5265e2a9670e8fa8a872e00aa0d40860994be50526bee34d73524/nngt-1.0.0a2.tar.gz (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4), version: 1.0.0a2 2024-02-06T16:32:38,523 Found link https://files.pythonhosted.org/packages/68/10/5b61ebf9140f33935ee2ec0044c54bac1e7b541f0e8a503afb3749a44d3d/nngt-1.0.1.tar.gz (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4), version: 1.0.1 2024-02-06T16:32:38,523 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/5b/33/c0d1d7516f9ec978a63942331d56c206d8526e2f9ccdffba0935847d63e1/nngt-1.0.2-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-02-06T16:32:38,523 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/ea/22/38fa33baea04550e08f53dfb402bcfda2236ab44a7314640a5a101233b18/nngt-1.0.2-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-02-06T16:32:38,524 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/a1/1e/4bbca4cbbe313504133080382b0be7b7e0a989d4097e9cc6b548fe01fbf8/nngt-1.1.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-02-06T16:32:38,524 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/b2/78/d35beaaaa3d2fc091a0ab596f766153ed8c4dfed73ac8374fd33a3d9213f/nngt-1.1.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-02-06T16:32:38,524 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/f2/17/bb2c448f30a99b8a87a039a4299c9358013f8324955a9f0c259e2fd02a7b/nngt-1.1.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-02-06T16:32:38,524 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/15/3e/2d59287009fa1b7ad9ba8aceebc7ed6f64877e8af50fa30eec73f63b8d91/nngt-1.1.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-02-06T16:32:38,524 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/d7/cc/65f356f5997051ad1448f339e77c6f1fda5527a5506147414774ab7fff26/nngt-1.1.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-02-06T16:32:38,525 Found link https://files.pythonhosted.org/packages/dd/57/c080b633f928e59009df278f86a5deb857ec855ced0e92bf5a66e6622587/nngt-1.1.0.tar.gz (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4), version: 1.1.0 2024-02-06T16:32:38,525 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/e3/e6/fc145bf6967aebd5d58431d0bd45681dc4c686cd3b401adca59e2a1c34bc/nngt-1.1.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-02-06T16:32:38,526 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/24/15/ee7a6d70087cd846165dc3839ffd0260dda96402b9fc73156caef56d6029/nngt-1.1.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-02-06T16:32:38,526 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/86/1e/4874d92118ab96083ceb646ab9b30a45bde02c8e6b3d769d3b93141a4dc8/nngt-1.1.1-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-02-06T16:32:38,526 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/c7/36/ce4ab69869e68453358afddc06324659a9e466ea169c1dc95860057aac09/nngt-1.1.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-02-06T16:32:38,526 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/8a/9e/5a72e54751c8bfa4948b29600b1f87de74783192579d4982b4e586b982d3/nngt-1.1.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-02-06T16:32:38,526 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/29/93/73ee8314cd35a11a2436365c25b0e0c374e2f20e173e0d0e031932eee984/nngt-1.1.1-py2.py3-none-any.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-02-06T16:32:38,527 Found link https://files.pythonhosted.org/packages/ac/aa/b4ab15d3b63545f5dbfa9e6227f539d92945a6f7eff265439b52b13f6ffd/nngt-1.1.1.tar.gz (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4), version: 1.1.1 2024-02-06T16:32:38,527 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/b4/0a/04ad1b67874b1d6707e820dc531d0efe08a364d65250f8e1fc7980c7e654/nngt-1.2.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-02-06T16:32:38,527 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/28/1f/5244fdfa5ba3e812bce1072fb45755c185240b961c5150d6fd92fa0ed2bb/nngt-1.2.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-02-06T16:32:38,528 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/de/ce/5fdb8cbb30d49ec87c36aceba565ef2f9c04bd2c23dc1d5c621d0bce5ea6/nngt-1.2.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-02-06T16:32:38,528 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/36/9a/16076817d9d648a6e31e692e1918c3db7d0a49070677761e850802f41d71/nngt-1.2.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-02-06T16:32:38,528 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/35/2d/a30bd5c371864d925fb186e15a976db1372f76a3c9c4da6aa7be280ac57f/nngt-1.2.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-02-06T16:32:38,528 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/f9/d3/52b491207f8f67736bb9cffd5c5b8922b9250724dced3807aaeed3a5904f/nngt-1.2.0-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-02-06T16:32:38,529 Found link https://files.pythonhosted.org/packages/4e/9e/ef294c748a3533c056cf01400babef12331739103b0ca6651fac41256a15/nngt-1.2.0.tar.gz (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4), version: 1.2.0 2024-02-06T16:32:38,529 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/57/5c/b1dcf3f243ae56d646f3bbf467279f8f45784815448c2e1662f1d67dac10/nngt-1.2.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-02-06T16:32:38,529 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/15/e7/6eeb8d6f281cbd4bd85c596cb265096f0bab09eb691641f2adb7dfaaf080/nngt-1.2.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-02-06T16:32:38,530 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/b7/51/95a49f4cb97067007fa4a40bb0d87200b9985171e09687baca2eaa102165/nngt-1.2.1-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-02-06T16:32:38,530 Skipping link: No binaries permitted for nngt: 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https://files.pythonhosted.org/packages/50/4b/fb9f77c77cf52605c95cf0241e994901171085ebfcd488168db7b9ef3804/nngt-1.2.1-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-02-06T16:32:38,531 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/f2/0e/7a9fad8bf9c9ba34369702f6331cebabe94df89cb778fd73ee3b4987a4e6/nngt-1.2.1-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-02-06T16:32:38,531 Found link https://files.pythonhosted.org/packages/f4/b0/36ffbf5d499dca0f7a27bede696f864054c63d42dbb100b012375c220064/nngt-1.2.1.tar.gz (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4), version: 1.2.1 2024-02-06T16:32:38,532 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/f8/4d/4056306e7110fa9a27536aefbe2ce9075591c715ea4a80ba6e13336f79dc/nngt-1.3.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-02-06T16:32:38,532 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/75/0d/d3187d5a98d2af7c076ba2ef8d3962af1118390d69a9541b58bb2fa7a0d1/nngt-1.3.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-02-06T16:32:38,532 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/f5/4a/336052f8c881c892297ee49f2dc71cba8cf64450c19007729aa0f79fc085/nngt-1.3.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-02-06T16:32:38,532 Skipping link: No binaries permitted for nngt: https://files.pythonhosted.org/packages/d5/be/bd33a63f3d5065275dd65db6796bde95480df792e726ed99430f29ec7b6e/nngt-1.3.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-02-06T16:32:38,532 Skipping link: No binaries permitted for nngt: 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(from https://www.piwheels.org/simple/nngt/) (requires-python:>=3.5, <4) 2024-02-06T16:32:38,659 Skipping link: No binaries permitted for nngt: https://www.piwheels.org/simple/nngt/nngt-2.5.0-py2.py3-none-any.whl#sha256=3d7a5eadd1bba7d15e228118108110782a0317230eea89a2766ff248eca8b8e4 (from https://www.piwheels.org/simple/nngt/) (requires-python:>=3.5, <4) 2024-02-06T16:32:38,659 Skipping link: No binaries permitted for nngt: https://www.piwheels.org/simple/nngt/nngt-2.4.0-py2.py3-none-any.whl#sha256=719fa783391ce80efda6895bb3cf21d095eb304cc84b1b9093eec691f12d5430 (from https://www.piwheels.org/simple/nngt/) (requires-python:>=3.5, <4) 2024-02-06T16:32:38,659 Skipping link: No binaries permitted for nngt: https://www.piwheels.org/simple/nngt/nngt-2.3.0-py2.py3-none-any.whl#sha256=9ceb1e3f6b850a6312d2f6369049700bdd0f6373ceb0dcac6db84298061771a5 (from https://www.piwheels.org/simple/nngt/) (requires-python:>=3.5, <4) 2024-02-06T16:32:38,659 Skipping link: No binaries permitted for nngt: 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(from https://www.piwheels.org/simple/nngt/) (requires-python:>=3.5, <4) 2024-02-06T16:32:38,660 Skipping link: No binaries permitted for nngt: https://www.piwheels.org/simple/nngt/nngt-1.3.2-py2.py3-none-any.whl#sha256=2e9bbc319b5dc8e0a175fe922cbb21384a1d2062997ddf0c130e431c65d56556 (from https://www.piwheels.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-02-06T16:32:38,660 Skipping link: No binaries permitted for nngt: https://www.piwheels.org/simple/nngt/nngt-1.3.0-py2.py3-none-any.whl#sha256=92fd1d9e492340b28c4d6afc731517fbdefe0e7ec055373d9d168e8e186010bd (from https://www.piwheels.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-02-06T16:32:38,660 Skipping link: No binaries permitted for nngt: https://www.piwheels.org/simple/nngt/nngt-1.2.0-py2.py3-none-any.whl#sha256=78c1a2180699a196075737e03ae45317d5cbc25797a4da300bcad9f4dfaac92a (from https://www.piwheels.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-02-06T16:32:38,661 Skipping link: No binaries permitted for nngt: https://www.piwheels.org/simple/nngt/nngt-1.1.1-py2.py3-none-any.whl#sha256=cf97d4373ddc648722bda8f85401c6e50bed8ed00e83a8d20c428404fb5213bb (from https://www.piwheels.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-02-06T16:32:38,661 Skipping link: No binaries permitted for nngt: https://www.piwheels.org/simple/nngt/nngt-1.1.0-py2.py3-none-any.whl#sha256=350f62a1d8f12c02cbc9349e841506285a02e93a6064804eca88ee287543b603 (from https://www.piwheels.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-02-06T16:32:38,661 Skipping link: No binaries permitted for nngt: https://www.piwheels.org/simple/nngt/nngt-1.0.1-py2.py3-none-any.whl#sha256=36e7bdc186dc9ab11d060c4ff2e57e21f7fba2eeeb6584f16325fa8dd10ce51b (from https://www.piwheels.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-02-06T16:32:38,661 Skipping link: No binaries permitted for nngt: https://www.piwheels.org/simple/nngt/nngt-1.0.0a2-py2.py3-none-any.whl#sha256=abb39c653092b849625bc2b29a452f537a21ba15eeaa58cb2cef702b5ad413e5 (from https://www.piwheels.org/simple/nngt/) (requires-python:>=2.7, <4) 2024-02-06T16:32:38,662 Skipping link: not a file: https://www.piwheels.org/simple/nngt/ 2024-02-06T16:32:38,662 Skipping link: not a file: https://pypi.org/simple/nngt/ 2024-02-06T16:32:38,682 Given no hashes to check 1 links for project 'nngt': discarding no candidates 2024-02-06T16:32:38,699 Collecting nngt==2.7.3 2024-02-06T16:32:38,701 Created temporary directory: /tmp/pip-unpack-o0kb2g0k 2024-02-06T16:32:38,803 Downloading NNGT-2.7.3.tar.gz (339 kB) 2024-02-06T16:32:39,142 Added nngt==2.7.3 from https://files.pythonhosted.org/packages/31/09/af0bc3ca9f68422c58a27a66806410cea97d230fee9272eace3c718cb157/NNGT-2.7.3.tar.gz to build tracker '/tmp/pip-build-tracker-s4_7b7so' 2024-02-06T16:32:39,150 Created temporary directory: /tmp/pip-build-env-0hk8_hmd 2024-02-06T16:32:39,160 Installing build dependencies: started 2024-02-06T16:32:39,161 Running command pip subprocess to install build dependencies 2024-02-06T16:32:40,322 Using pip 23.3.1 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9) 2024-02-06T16:32:40,858 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-02-06T16:32:42,240 Collecting setuptools>=61.0 2024-02-06T16:32:42,257 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.0.3-py3-none-any.whl (819 kB) 2024-02-06T16:32:43,237 Collecting numpy>=1.17 2024-02-06T16:32:43,253 Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.4-cp39-cp39-linux_armv7l.whl (5.6 MB) 2024-02-06T16:32:44,685 Collecting cython>=0.18 2024-02-06T16:32:44,686 Obtaining dependency information for cython>=0.18 from https://files.pythonhosted.org/packages/e3/7f/f584f5d15323feb897d42ef0e9d910649e2150d7a30cf7e7a8cc1d236e6f/Cython-3.0.8-py2.py3-none-any.whl.metadata 2024-02-06T16:32:44,693 Using cached Cython-3.0.8-py2.py3-none-any.whl.metadata (3.2 kB) 2024-02-06T16:32:44,932 Using cached Cython-3.0.8-py2.py3-none-any.whl (1.2 MB) 2024-02-06T16:32:46,771 Installing collected packages: setuptools, numpy, cython 2024-02-06T16:32:57,254 Creating /tmp/pip-build-env-0hk8_hmd/overlay/bin 2024-02-06T16:32:57,256 changing mode of /tmp/pip-build-env-0hk8_hmd/overlay/bin/f2py to 755 2024-02-06T16:32:59,985 changing mode of /tmp/pip-build-env-0hk8_hmd/overlay/bin/cygdb to 755 2024-02-06T16:32:59,987 changing mode of /tmp/pip-build-env-0hk8_hmd/overlay/bin/cython to 755 2024-02-06T16:32:59,989 changing mode of /tmp/pip-build-env-0hk8_hmd/overlay/bin/cythonize to 755 2024-02-06T16:33:00,012 ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. 2024-02-06T16:33:00,012 scipy 1.8.1 requires numpy<1.25.0,>=1.17.3, but you have numpy 1.26.4 which is incompatible. 2024-02-06T16:33:00,013 Successfully installed cython-3.0.8 numpy-1.26.4 setuptools-69.0.3 2024-02-06T16:33:00,201 [notice] A new release of pip is available: 23.3.1 -> 23.3.2 2024-02-06T16:33:00,201 [notice] To update, run: python3 -m pip install --upgrade pip 2024-02-06T16:33:00,610 Installing build dependencies: finished with status 'done' 2024-02-06T16:33:00,615 Getting requirements to build wheel: started 2024-02-06T16:33:00,616 Running command Getting requirements to build wheel 2024-02-06T16:33:12,811 Compiling ./nngt/generation/cconnect.pyx because it changed. 2024-02-06T16:33:12,812 [1/1] Cythonizing ./nngt/generation/cconnect.pyx 2024-02-06T16:33:13,097 running egg_info 2024-02-06T16:33:13,103 writing NNGT.egg-info/PKG-INFO 2024-02-06T16:33:13,105 /tmp/pip-build-env-0hk8_hmd/overlay/lib/python3.9/site-packages/setuptools/_core_metadata.py:157: SetuptoolsDeprecationWarning: Invalid config. 2024-02-06T16:33:13,105 !! 2024-02-06T16:33:13,106 ******************************************************************************** 2024-02-06T16:33:13,106 newlines are not allowed in `summary` and will break in the future 2024-02-06T16:33:13,106 ******************************************************************************** 2024-02-06T16:33:13,106 !! 2024-02-06T16:33:13,106 write_field('Summary', single_line(summary)) 2024-02-06T16:33:13,120 writing dependency_links to NNGT.egg-info/dependency_links.txt 2024-02-06T16:33:13,128 writing requirements to NNGT.egg-info/requires.txt 2024-02-06T16:33:13,341 writing top-level names to NNGT.egg-info/top_level.txt 2024-02-06T16:33:13,377 dependency /tmp/pip-build-env-0hk8_hmd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-02-06T16:33:13,377 dependency /tmp/pip-build-env-0hk8_hmd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-02-06T16:33:13,377 dependency /tmp/pip-build-env-0hk8_hmd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-02-06T16:33:13,378 dependency /tmp/pip-build-env-0hk8_hmd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-02-06T16:33:13,378 dependency /tmp/pip-build-env-0hk8_hmd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-02-06T16:33:13,382 reading manifest file 'NNGT.egg-info/SOURCES.txt' 2024-02-06T16:33:13,387 reading manifest template 'MANIFEST.in' 2024-02-06T16:33:13,497 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2024-02-06T16:33:13,499 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2024-02-06T16:33:13,500 adding license file 'LICENSES/BSD-2-Clause.txt' 2024-02-06T16:33:13,500 adding license file 'LICENSES/CC-BY-SA-4.0.txt' 2024-02-06T16:33:13,500 adding license file 'LICENSES/CC0-1.0.txt' 2024-02-06T16:33:13,500 adding license file 'LICENSES/GPL-3.0-or-later.txt' 2024-02-06T16:33:13,500 adding license file 'LICENSES/Python-2.0.txt' 2024-02-06T16:33:13,508 writing manifest file 'NNGT.egg-info/SOURCES.txt' 2024-02-06T16:33:14,169 Getting requirements to build wheel: finished with status 'done' 2024-02-06T16:33:14,181 Installing backend dependencies: started 2024-02-06T16:33:14,185 Running command pip subprocess to install backend dependencies 2024-02-06T16:33:15,354 Using pip 23.3.1 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9) 2024-02-06T16:33:15,908 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-02-06T16:33:16,256 Collecting wheel 2024-02-06T16:33:16,273 Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB) 2024-02-06T16:33:17,937 Installing collected packages: wheel 2024-02-06T16:33:18,163 Creating /tmp/pip-build-env-0hk8_hmd/normal/bin 2024-02-06T16:33:18,165 changing mode of /tmp/pip-build-env-0hk8_hmd/normal/bin/wheel to 755 2024-02-06T16:33:18,178 Successfully installed wheel-0.42.0 2024-02-06T16:33:18,361 [notice] A new release of pip is available: 23.3.1 -> 23.3.2 2024-02-06T16:33:18,361 [notice] To update, run: python3 -m pip install --upgrade pip 2024-02-06T16:33:18,579 Installing backend dependencies: finished with status 'done' 2024-02-06T16:33:18,582 Created temporary directory: /tmp/pip-modern-metadata-j402901v 2024-02-06T16:33:18,584 Preparing metadata (pyproject.toml): started 2024-02-06T16:33:18,585 Running command Preparing metadata (pyproject.toml) 2024-02-06T16:33:20,516 running dist_info 2024-02-06T16:33:20,523 creating /tmp/pip-modern-metadata-j402901v/NNGT.egg-info 2024-02-06T16:33:20,528 writing /tmp/pip-modern-metadata-j402901v/NNGT.egg-info/PKG-INFO 2024-02-06T16:33:20,530 /tmp/pip-build-env-0hk8_hmd/overlay/lib/python3.9/site-packages/setuptools/_core_metadata.py:157: SetuptoolsDeprecationWarning: Invalid config. 2024-02-06T16:33:20,530 !! 2024-02-06T16:33:20,531 ******************************************************************************** 2024-02-06T16:33:20,531 newlines are not allowed in `summary` and will break in the future 2024-02-06T16:33:20,531 ******************************************************************************** 2024-02-06T16:33:20,531 !! 2024-02-06T16:33:20,531 write_field('Summary', single_line(summary)) 2024-02-06T16:33:20,543 writing dependency_links to /tmp/pip-modern-metadata-j402901v/NNGT.egg-info/dependency_links.txt 2024-02-06T16:33:20,550 writing requirements to /tmp/pip-modern-metadata-j402901v/NNGT.egg-info/requires.txt 2024-02-06T16:33:20,551 writing top-level names to /tmp/pip-modern-metadata-j402901v/NNGT.egg-info/top_level.txt 2024-02-06T16:33:20,552 writing manifest file '/tmp/pip-modern-metadata-j402901v/NNGT.egg-info/SOURCES.txt' 2024-02-06T16:33:20,594 dependency /tmp/pip-build-env-0hk8_hmd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-02-06T16:33:20,594 dependency /tmp/pip-build-env-0hk8_hmd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-02-06T16:33:20,594 dependency /tmp/pip-build-env-0hk8_hmd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-02-06T16:33:20,595 dependency /tmp/pip-build-env-0hk8_hmd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-02-06T16:33:20,595 dependency /tmp/pip-build-env-0hk8_hmd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-02-06T16:33:20,599 reading manifest file '/tmp/pip-modern-metadata-j402901v/NNGT.egg-info/SOURCES.txt' 2024-02-06T16:33:20,601 reading manifest template 'MANIFEST.in' 2024-02-06T16:33:20,708 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2024-02-06T16:33:20,710 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2024-02-06T16:33:20,710 adding license file 'LICENSES/BSD-2-Clause.txt' 2024-02-06T16:33:20,710 adding license file 'LICENSES/CC-BY-SA-4.0.txt' 2024-02-06T16:33:20,711 adding license file 'LICENSES/CC0-1.0.txt' 2024-02-06T16:33:20,711 adding license file 'LICENSES/GPL-3.0-or-later.txt' 2024-02-06T16:33:20,711 adding license file 'LICENSES/Python-2.0.txt' 2024-02-06T16:33:20,716 writing manifest file '/tmp/pip-modern-metadata-j402901v/NNGT.egg-info/SOURCES.txt' 2024-02-06T16:33:20,717 creating '/tmp/pip-modern-metadata-j402901v/NNGT-2.7.3.dist-info' 2024-02-06T16:33:20,938 Preparing metadata (pyproject.toml): finished with status 'done' 2024-02-06T16:33:20,946 Source in /tmp/pip-wheel-v9iuvpcy/nngt_ad90fa79fd314c5d9e3f89a4f6fcbc6e has version 2.7.3, which satisfies requirement nngt==2.7.3 from https://files.pythonhosted.org/packages/31/09/af0bc3ca9f68422c58a27a66806410cea97d230fee9272eace3c718cb157/NNGT-2.7.3.tar.gz 2024-02-06T16:33:20,947 Removed nngt==2.7.3 from https://files.pythonhosted.org/packages/31/09/af0bc3ca9f68422c58a27a66806410cea97d230fee9272eace3c718cb157/NNGT-2.7.3.tar.gz from build tracker '/tmp/pip-build-tracker-s4_7b7so' 2024-02-06T16:33:20,956 Created temporary directory: /tmp/pip-unpack-nn1dg9oy 2024-02-06T16:33:20,957 Created temporary directory: /tmp/pip-unpack-j05eapic 2024-02-06T16:33:21,027 Building wheels for collected packages: nngt 2024-02-06T16:33:21,031 Created temporary directory: /tmp/pip-wheel-a2exybqi 2024-02-06T16:33:21,032 Destination directory: /tmp/pip-wheel-a2exybqi 2024-02-06T16:33:21,034 Building wheel for nngt (pyproject.toml): started 2024-02-06T16:33:21,035 Running command Building wheel for nngt (pyproject.toml) 2024-02-06T16:33:22,889 running bdist_wheel 2024-02-06T16:33:22,909 running build 2024-02-06T16:33:22,909 running build_py 2024-02-06T16:33:22,915 creating build 2024-02-06T16:33:22,915 creating build/lib.linux-armv7l-cpython-39 2024-02-06T16:33:22,916 creating build/lib.linux-armv7l-cpython-39/nngt 2024-02-06T16:33:22,917 copying ./nngt/__init__.py -> build/lib.linux-armv7l-cpython-39/nngt 2024-02-06T16:33:22,920 creating build/lib.linux-armv7l-cpython-39/nngt/generation 2024-02-06T16:33:22,921 copying ./nngt/generation/graph_connectivity.py -> build/lib.linux-armv7l-cpython-39/nngt/generation 2024-02-06T16:33:22,924 copying ./nngt/generation/connect_algorithms.py -> build/lib.linux-armv7l-cpython-39/nngt/generation 2024-02-06T16:33:22,928 copying ./nngt/generation/__init__.py -> build/lib.linux-armv7l-cpython-39/nngt/generation 2024-02-06T16:33:22,931 copying ./nngt/generation/mpi_connect.py -> build/lib.linux-armv7l-cpython-39/nngt/generation 2024-02-06T16:33:22,934 copying ./nngt/generation/connectors.py -> build/lib.linux-armv7l-cpython-39/nngt/generation 2024-02-06T16:33:22,938 copying ./nngt/generation/rewiring.py -> build/lib.linux-armv7l-cpython-39/nngt/generation 2024-02-06T16:33:22,943 creating build/lib.linux-armv7l-cpython-39/nngt/geospatial 2024-02-06T16:33:22,944 copying ./nngt/geospatial/plot.py -> build/lib.linux-armv7l-cpython-39/nngt/geospatial 2024-02-06T16:33:22,949 copying ./nngt/geospatial/__init__.py -> build/lib.linux-armv7l-cpython-39/nngt/geospatial 2024-02-06T16:33:22,951 copying ./nngt/geospatial/countries.py -> build/lib.linux-armv7l-cpython-39/nngt/geospatial 2024-02-06T16:33:22,953 creating build/lib.linux-armv7l-cpython-39/nngt/analysis 2024-02-06T16:33:22,954 copying ./nngt/analysis/graph_analysis.py -> build/lib.linux-armv7l-cpython-39/nngt/analysis 2024-02-06T16:33:22,957 copying ./nngt/analysis/clustering.py -> build/lib.linux-armv7l-cpython-39/nngt/analysis 2024-02-06T16:33:22,959 copying ./nngt/analysis/gt_functions.py -> build/lib.linux-armv7l-cpython-39/nngt/analysis 2024-02-06T16:33:22,962 copying ./nngt/analysis/nx_functions.py -> build/lib.linux-armv7l-cpython-39/nngt/analysis 2024-02-06T16:33:22,964 copying ./nngt/analysis/nngt_functions.py -> build/lib.linux-armv7l-cpython-39/nngt/analysis 2024-02-06T16:33:22,967 copying ./nngt/analysis/__init__.py -> build/lib.linux-armv7l-cpython-39/nngt/analysis 2024-02-06T16:33:22,968 copying ./nngt/analysis/ig_functions.py -> build/lib.linux-armv7l-cpython-39/nngt/analysis 2024-02-06T16:33:22,970 copying ./nngt/analysis/activity_analysis.py -> build/lib.linux-armv7l-cpython-39/nngt/analysis 2024-02-06T16:33:22,973 copying ./nngt/analysis/bayesian_blocks.py -> build/lib.linux-armv7l-cpython-39/nngt/analysis 2024-02-06T16:33:22,976 creating build/lib.linux-armv7l-cpython-39/nngt/core 2024-02-06T16:33:22,977 copying ./nngt/core/connections.py -> build/lib.linux-armv7l-cpython-39/nngt/core 2024-02-06T16:33:22,980 copying ./nngt/core/graph_interface.py -> build/lib.linux-armv7l-cpython-39/nngt/core 2024-02-06T16:33:22,982 copying ./nngt/core/gt_graph.py -> build/lib.linux-armv7l-cpython-39/nngt/core 2024-02-06T16:33:22,986 copying ./nngt/core/ig_graph.py -> build/lib.linux-armv7l-cpython-39/nngt/core 2024-02-06T16:33:22,988 copying ./nngt/core/graph.py -> build/lib.linux-armv7l-cpython-39/nngt/core 2024-02-06T16:33:22,992 copying ./nngt/core/neural_pop_group.py -> build/lib.linux-armv7l-cpython-39/nngt/core 2024-02-06T16:33:22,995 copying ./nngt/core/__init__.py -> build/lib.linux-armv7l-cpython-39/nngt/core 2024-02-06T16:33:22,997 copying ./nngt/core/group_structure.py -> build/lib.linux-armv7l-cpython-39/nngt/core 2024-02-06T16:33:23,000 copying ./nngt/core/nngt_graph.py -> build/lib.linux-armv7l-cpython-39/nngt/core 2024-02-06T16:33:23,003 copying ./nngt/core/nx_graph.py -> build/lib.linux-armv7l-cpython-39/nngt/core 2024-02-06T16:33:23,006 copying ./nngt/core/networks.py -> build/lib.linux-armv7l-cpython-39/nngt/core 2024-02-06T16:33:23,008 copying ./nngt/core/spatial_graph.py -> build/lib.linux-armv7l-cpython-39/nngt/core 2024-02-06T16:33:23,012 creating build/lib.linux-armv7l-cpython-39/nngt/lib 2024-02-06T16:33:23,013 copying ./nngt/lib/graph_helpers.py -> build/lib.linux-armv7l-cpython-39/nngt/lib 2024-02-06T16:33:23,016 copying ./nngt/lib/logger.py -> build/lib.linux-armv7l-cpython-39/nngt/lib 2024-02-06T16:33:23,018 copying ./nngt/lib/errors.py -> build/lib.linux-armv7l-cpython-39/nngt/lib 2024-02-06T16:33:23,020 copying ./nngt/lib/constants.py -> build/lib.linux-armv7l-cpython-39/nngt/lib 2024-02-06T16:33:23,022 copying ./nngt/lib/connect_tools.py -> build/lib.linux-armv7l-cpython-39/nngt/lib 2024-02-06T16:33:23,024 copying ./nngt/lib/sorting.py -> build/lib.linux-armv7l-cpython-39/nngt/lib 2024-02-06T16:33:23,027 copying ./nngt/lib/graph_backends.py -> build/lib.linux-armv7l-cpython-39/nngt/lib 2024-02-06T16:33:23,029 copying ./nngt/lib/_frozendict.py -> build/lib.linux-armv7l-cpython-39/nngt/lib 2024-02-06T16:33:23,031 copying ./nngt/lib/__init__.py -> build/lib.linux-armv7l-cpython-39/nngt/lib 2024-02-06T16:33:23,033 copying ./nngt/lib/rng_tools.py -> build/lib.linux-armv7l-cpython-39/nngt/lib 2024-02-06T16:33:23,035 copying ./nngt/lib/nngt_config.py -> build/lib.linux-armv7l-cpython-39/nngt/lib 2024-02-06T16:33:23,038 copying ./nngt/lib/converters.py -> build/lib.linux-armv7l-cpython-39/nngt/lib 2024-02-06T16:33:23,040 copying ./nngt/lib/test_functions.py -> build/lib.linux-armv7l-cpython-39/nngt/lib 2024-02-06T16:33:23,043 copying ./nngt/lib/db_tools.py -> build/lib.linux-armv7l-cpython-39/nngt/lib 2024-02-06T16:33:23,045 copying ./nngt/lib/decorator.py -> build/lib.linux-armv7l-cpython-39/nngt/lib 2024-02-06T16:33:23,048 creating build/lib.linux-armv7l-cpython-39/nngt/database 2024-02-06T16:33:23,049 copying ./nngt/database/pickle_field.py -> build/lib.linux-armv7l-cpython-39/nngt/database 2024-02-06T16:33:23,051 copying ./nngt/database/__init__.py -> build/lib.linux-armv7l-cpython-39/nngt/database 2024-02-06T16:33:23,053 copying ./nngt/database/db_generation.py -> build/lib.linux-armv7l-cpython-39/nngt/database 2024-02-06T16:33:23,055 copying ./nngt/database/csv_utils.py -> build/lib.linux-armv7l-cpython-39/nngt/database 2024-02-06T16:33:23,058 copying ./nngt/database/db_main.py -> build/lib.linux-armv7l-cpython-39/nngt/database 2024-02-06T16:33:23,061 creating build/lib.linux-armv7l-cpython-39/nngt/simulation 2024-02-06T16:33:23,063 copying ./nngt/simulation/nest_utils.py -> build/lib.linux-armv7l-cpython-39/nngt/simulation 2024-02-06T16:33:23,065 copying ./nngt/simulation/nest_plot.py -> build/lib.linux-armv7l-cpython-39/nngt/simulation 2024-02-06T16:33:23,069 copying ./nngt/simulation/__init__.py -> build/lib.linux-armv7l-cpython-39/nngt/simulation 2024-02-06T16:33:23,071 copying ./nngt/simulation/nest_graph.py -> build/lib.linux-armv7l-cpython-39/nngt/simulation 2024-02-06T16:33:23,073 copying ./nngt/simulation/nest_activity.py -> build/lib.linux-armv7l-cpython-39/nngt/simulation 2024-02-06T16:33:23,077 creating build/lib.linux-armv7l-cpython-39/nngt/io 2024-02-06T16:33:23,078 copying ./nngt/io/graph_saving.py -> build/lib.linux-armv7l-cpython-39/nngt/io 2024-02-06T16:33:23,081 copying ./nngt/io/saving_helpers.py -> build/lib.linux-armv7l-cpython-39/nngt/io 2024-02-06T16:33:23,083 copying ./nngt/io/loading_helpers.py -> build/lib.linux-armv7l-cpython-39/nngt/io 2024-02-06T16:33:23,085 copying ./nngt/io/graph_loading.py -> build/lib.linux-armv7l-cpython-39/nngt/io 2024-02-06T16:33:23,088 copying ./nngt/io/io_helpers.py -> build/lib.linux-armv7l-cpython-39/nngt/io 2024-02-06T16:33:23,090 copying ./nngt/io/__init__.py -> build/lib.linux-armv7l-cpython-39/nngt/io 2024-02-06T16:33:23,093 creating build/lib.linux-armv7l-cpython-39/nngt/geometry 2024-02-06T16:33:23,094 copying ./nngt/geometry/svgtools.py -> build/lib.linux-armv7l-cpython-39/nngt/geometry 2024-02-06T16:33:23,097 copying ./nngt/geometry/dxftools.py -> build/lib.linux-armv7l-cpython-39/nngt/geometry 2024-02-06T16:33:23,099 copying ./nngt/geometry/backup_shape.py -> build/lib.linux-armv7l-cpython-39/nngt/geometry 2024-02-06T16:33:23,101 copying ./nngt/geometry/pync_log.py -> build/lib.linux-armv7l-cpython-39/nngt/geometry 2024-02-06T16:33:23,103 copying ./nngt/geometry/plot.py -> build/lib.linux-armv7l-cpython-39/nngt/geometry 2024-02-06T16:33:23,105 copying ./nngt/geometry/geom_utils.py -> build/lib.linux-armv7l-cpython-39/nngt/geometry 2024-02-06T16:33:23,107 copying ./nngt/geometry/__init__.py -> build/lib.linux-armv7l-cpython-39/nngt/geometry 2024-02-06T16:33:23,109 copying ./nngt/geometry/shape_io.py -> build/lib.linux-armv7l-cpython-39/nngt/geometry 2024-02-06T16:33:23,111 copying ./nngt/geometry/units.py -> build/lib.linux-armv7l-cpython-39/nngt/geometry 2024-02-06T16:33:23,113 copying ./nngt/geometry/tools.py -> build/lib.linux-armv7l-cpython-39/nngt/geometry 2024-02-06T16:33:23,115 copying ./nngt/geometry/triangulate.py -> build/lib.linux-armv7l-cpython-39/nngt/geometry 2024-02-06T16:33:23,117 copying ./nngt/geometry/shape.py -> build/lib.linux-armv7l-cpython-39/nngt/geometry 2024-02-06T16:33:23,121 creating build/lib.linux-armv7l-cpython-39/nngt/plot 2024-02-06T16:33:23,122 copying ./nngt/plot/custom_plt.py -> build/lib.linux-armv7l-cpython-39/nngt/plot 2024-02-06T16:33:23,125 copying ./nngt/plot/plt_networks.py -> build/lib.linux-armv7l-cpython-39/nngt/plot 2024-02-06T16:33:23,161 copying ./nngt/plot/hive_helpers.py -> build/lib.linux-armv7l-cpython-39/nngt/plot 2024-02-06T16:33:23,163 copying ./nngt/plot/__init__.py -> build/lib.linux-armv7l-cpython-39/nngt/plot 2024-02-06T16:33:23,165 copying ./nngt/plot/animations.py -> build/lib.linux-armv7l-cpython-39/nngt/plot 2024-02-06T16:33:23,167 copying ./nngt/plot/plt_properties.py -> build/lib.linux-armv7l-cpython-39/nngt/plot 2024-02-06T16:33:23,171 creating build/lib.linux-armv7l-cpython-39/nngt/geometry/dxf_import 2024-02-06T16:33:23,172 copying ./nngt/geometry/dxf_import/read_dxf.py -> build/lib.linux-armv7l-cpython-39/nngt/geometry/dxf_import 2024-02-06T16:33:23,174 copying ./nngt/geometry/dxf_import/homcoord.py -> build/lib.linux-armv7l-cpython-39/nngt/geometry/dxf_import 2024-02-06T16:33:23,176 copying ./nngt/geometry/dxf_import/__init__.py -> build/lib.linux-armv7l-cpython-39/nngt/geometry/dxf_import 2024-02-06T16:33:23,178 creating build/lib.linux-armv7l-cpython-39/nngt/geometry/examples 2024-02-06T16:33:23,179 copying ./nngt/geometry/examples/backup_shape.py -> build/lib.linux-armv7l-cpython-39/nngt/geometry/examples 2024-02-06T16:33:23,181 copying ./nngt/geometry/examples/gen_obstacles.py -> build/lib.linux-armv7l-cpython-39/nngt/geometry/examples 2024-02-06T16:33:23,183 copying ./nngt/geometry/examples/load_shapes.py -> build/lib.linux-armv7l-cpython-39/nngt/geometry/examples 2024-02-06T16:33:23,184 copying ./nngt/geometry/examples/load_culture.py -> build/lib.linux-armv7l-cpython-39/nngt/geometry/examples 2024-02-06T16:33:23,187 creating build/lib.linux-armv7l-cpython-39/nngt/plot/chord_diag 2024-02-06T16:33:23,187 copying ./nngt/plot/chord_diag/example.py -> build/lib.linux-armv7l-cpython-39/nngt/plot/chord_diag 2024-02-06T16:33:23,189 copying ./nngt/plot/chord_diag/utilities.py -> build/lib.linux-armv7l-cpython-39/nngt/plot/chord_diag 2024-02-06T16:33:23,191 copying ./nngt/plot/chord_diag/__init__.py -> build/lib.linux-armv7l-cpython-39/nngt/plot/chord_diag 2024-02-06T16:33:23,193 copying ./nngt/plot/chord_diag/chord_diagram.py -> build/lib.linux-armv7l-cpython-39/nngt/plot/chord_diag 2024-02-06T16:33:23,195 copying ./nngt/plot/chord_diag/gradient.py -> build/lib.linux-armv7l-cpython-39/nngt/plot/chord_diag 2024-02-06T16:33:23,206 copying ./nngt/nngt.conf.default -> build/lib.linux-armv7l-cpython-39/nngt 2024-02-06T16:33:23,209 copying ./nngt/generation/cconnect.pyxbld -> build/lib.linux-armv7l-cpython-39/nngt/generation 2024-02-06T16:33:23,211 copying ./nngt/generation/cconnect.pyx -> build/lib.linux-armv7l-cpython-39/nngt/generation 2024-02-06T16:33:23,214 copying ./nngt/generation/cconnect.pxd -> build/lib.linux-armv7l-cpython-39/nngt/generation 2024-02-06T16:33:23,216 copying ./nngt/generation/func_connect.cpp -> build/lib.linux-armv7l-cpython-39/nngt/generation 2024-02-06T16:33:23,219 copying ./nngt/generation/func_connect.h -> build/lib.linux-armv7l-cpython-39/nngt/generation 2024-02-06T16:33:23,221 copying ./nngt/geometry/README.md -> build/lib.linux-armv7l-cpython-39/nngt/geometry 2024-02-06T16:33:23,223 copying ./nngt/plot/chord_diag/README.md -> build/lib.linux-armv7l-cpython-39/nngt/plot/chord_diag 2024-02-06T16:33:23,235 running build_ext 2024-02-06T16:33:23,242 building 'nngt.generation.cconnect' extension 2024-02-06T16:33:23,242 creating build/temp.linux-armv7l-cpython-39 2024-02-06T16:33:23,243 creating build/temp.linux-armv7l-cpython-39/nngt 2024-02-06T16:33:23,244 creating build/temp.linux-armv7l-cpython-39/nngt/generation 2024-02-06T16:33:23,245 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I./nngt/generation -I./nngt/generation/ -I/tmp/pip-build-env-0hk8_hmd/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c ./nngt/generation/cconnect.cpp -o build/temp.linux-armv7l-cpython-39/./nngt/generation/cconnect.o 2024-02-06T16:33:23,709 In file included from /tmp/pip-build-env-0hk8_hmd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2024-02-06T16:33:23,710 from /tmp/pip-build-env-0hk8_hmd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2024-02-06T16:33:23,710 from /tmp/pip-build-env-0hk8_hmd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5, 2024-02-06T16:33:23,710 from ./nngt/generation/cconnect.cpp:1246: 2024-02-06T16:33:23,710 /tmp/pip-build-env-0hk8_hmd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2024-02-06T16:33:23,710 17 | #warning "Using deprecated NumPy API, disable it with " \ 2024-02-06T16:33:23,710 | ^~~~~~~ 2024-02-06T16:34:25,624 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I./nngt/generation -I./nngt/generation/ -I/tmp/pip-build-env-0hk8_hmd/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c ./nngt/generation/func_connect.cpp -o build/temp.linux-armv7l-cpython-39/./nngt/generation/func_connect.o 2024-02-06T16:34:25,935 ./nngt/generation/func_connect.cpp:232: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 2024-02-06T16:34:25,935 232 | #pragma omp parallel num_threads(omp) 2024-02-06T16:34:25,935 | 2024-02-06T16:34:25,936 ./nngt/generation/func_connect.cpp:237: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 2024-02-06T16:34:25,936 237 | #pragma omp for schedule(static) 2024-02-06T16:34:25,936 | 2024-02-06T16:34:25,936 ./nngt/generation/func_connect.cpp:324: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 2024-02-06T16:34:25,936 324 | #pragma omp parallel num_threads(num_omp) 2024-02-06T16:34:25,936 | 2024-02-06T16:34:25,936 ./nngt/generation/func_connect.cpp:340: warning: ignoring ‘#pragma omp single’ [-Wunknown-pragmas] 2024-02-06T16:34:25,937 340 | #pragma omp single 2024-02-06T16:34:25,937 | 2024-02-06T16:34:25,937 ./nngt/generation/func_connect.cpp:344: warning: ignoring ‘#pragma omp barrier’ [-Wunknown-pragmas] 2024-02-06T16:34:25,937 344 | #pragma omp barrier 2024-02-06T16:34:25,937 | 2024-02-06T16:34:25,937 ./nngt/generation/func_connect.cpp:345: warning: ignoring ‘#pragma omp flush’ [-Wunknown-pragmas] 2024-02-06T16:34:25,938 345 | #pragma omp flush(current_enum) 2024-02-06T16:34:25,938 | 2024-02-06T16:34:25,938 ./nngt/generation/func_connect.cpp:349: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 2024-02-06T16:34:25,938 349 | #pragma omp for schedule(static) 2024-02-06T16:34:25,938 | 2024-02-06T16:34:25,938 ./nngt/generation/func_connect.cpp:401: warning: ignoring ‘#pragma omp atomic’ [-Wunknown-pragmas] 2024-02-06T16:34:25,939 401 | #pragma omp atomic 2024-02-06T16:34:25,939 | 2024-02-06T16:34:25,939 ./nngt/generation/func_connect.cpp:404: warning: ignoring ‘#pragma omp barrier’ [-Wunknown-pragmas] 2024-02-06T16:34:25,939 404 | #pragma omp barrier // ensure everyone is ready 2024-02-06T16:34:25,939 | 2024-02-06T16:34:25,939 ./nngt/generation/func_connect.cpp:405: warning: ignoring ‘#pragma omp flush’ [-Wunknown-pragmas] 2024-02-06T16:34:25,940 405 | #pragma omp flush(current_enum) // and gets last value 2024-02-06T16:34:25,940 | 2024-02-06T16:34:25,940 ./nngt/generation/func_connect.cpp:406: warning: ignoring ‘#pragma omp barrier’ [-Wunknown-pragmas] 2024-02-06T16:34:25,940 406 | #pragma omp barrier // for sure 2024-02-06T16:34:25,940 | 2024-02-06T16:34:25,940 ./nngt/generation/func_connect.cpp:410: warning: ignoring ‘#pragma omp single’ [-Wunknown-pragmas] 2024-02-06T16:34:25,940 410 | #pragma omp single 2024-02-06T16:34:25,941 | 2024-02-06T16:34:25,941 ./nngt/generation/func_connect.cpp:420: warning: ignoring ‘#pragma omp barrier’ [-Wunknown-pragmas] 2024-02-06T16:34:25,941 420 | #pragma omp barrier 2024-02-06T16:34:25,941 | 2024-02-06T16:34:25,941 ./nngt/generation/func_connect.cpp:422: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 2024-02-06T16:34:25,941 422 | #pragma omp critical 2024-02-06T16:34:25,941 | 2024-02-06T16:34:25,942 ./nngt/generation/func_connect.cpp:444: warning: ignoring ‘#pragma omp flush’ [-Wunknown-pragmas] 2024-02-06T16:34:25,942 444 | #pragma omp flush(ecount_fill) 2024-02-06T16:34:25,942 | 2024-02-06T16:34:27,080 ./nngt/generation/func_connect.cpp: In function ‘void generation::_gen_edges(int64_t*, const std::vector&, const std::vector&, const std::vector&, const std::vector >&, unsigned int, bool, bool, std::vector&)’: 2024-02-06T16:34:27,080 ./nngt/generation/func_connect.cpp:229:9: warning: unused variable ‘omp’ [-Wunused-variable] 2024-02-06T16:34:27,080 229 | int omp = seeds.size(); 2024-02-06T16:34:27,080 | ^~~ 2024-02-06T16:34:27,101 ./nngt/generation/func_connect.cpp: In function ‘void generation::_cdistance_rule(int64_t*, const std::vector&, const std::vector >&, const string&, float, float, const std::vector&, const std::vector&, size_t, size_t, const std::vector >&, std::vector&, bool, bool, std::vector&)’: 2024-02-06T16:34:27,102 ./nngt/generation/func_connect.cpp:271:9: warning: unused variable ‘num_omp’ [-Wunused-variable] 2024-02-06T16:34:27,102 271 | int num_omp = seeds.size(); 2024-02-06T16:34:27,102 | ^~~~~~~ 2024-02-06T16:34:30,808 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/./nngt/generation/cconnect.o build/temp.linux-armv7l-cpython-39/./nngt/generation/func_connect.o -L./nngt/generation/ -L/usr/lib -L/usr/lib -lgomp -o build/lib.linux-armv7l-cpython-39/nngt/generation/cconnect.cpython-39-arm-linux-gnueabihf.so 2024-02-06T16:34:31,298 installing to build/bdist.linux-armv7l/wheel 2024-02-06T16:34:31,299 running install 2024-02-06T16:34:31,324 running install_lib 2024-02-06T16:34:31,330 creating build/bdist.linux-armv7l 2024-02-06T16:34:31,330 creating build/bdist.linux-armv7l/wheel 2024-02-06T16:34:31,332 creating build/bdist.linux-armv7l/wheel/nngt 2024-02-06T16:34:31,334 creating build/bdist.linux-armv7l/wheel/nngt/generation 2024-02-06T16:34:31,335 copying build/lib.linux-armv7l-cpython-39/nngt/generation/func_connect.cpp -> build/bdist.linux-armv7l/wheel/nngt/generation 2024-02-06T16:34:31,337 copying build/lib.linux-armv7l-cpython-39/nngt/generation/graph_connectivity.py -> build/bdist.linux-armv7l/wheel/nngt/generation 2024-02-06T16:34:31,340 copying build/lib.linux-armv7l-cpython-39/nngt/generation/func_connect.h -> build/bdist.linux-armv7l/wheel/nngt/generation 2024-02-06T16:34:31,342 copying build/lib.linux-armv7l-cpython-39/nngt/generation/cconnect.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/nngt/generation 2024-02-06T16:34:31,389 copying build/lib.linux-armv7l-cpython-39/nngt/generation/cconnect.pyxbld -> build/bdist.linux-armv7l/wheel/nngt/generation 2024-02-06T16:34:31,390 copying build/lib.linux-armv7l-cpython-39/nngt/generation/connect_algorithms.py -> build/bdist.linux-armv7l/wheel/nngt/generation 2024-02-06T16:34:31,393 copying build/lib.linux-armv7l-cpython-39/nngt/generation/cconnect.pyx -> build/bdist.linux-armv7l/wheel/nngt/generation 2024-02-06T16:34:31,395 copying build/lib.linux-armv7l-cpython-39/nngt/generation/__init__.py -> build/bdist.linux-armv7l/wheel/nngt/generation 2024-02-06T16:34:31,397 copying build/lib.linux-armv7l-cpython-39/nngt/generation/mpi_connect.py -> build/bdist.linux-armv7l/wheel/nngt/generation 2024-02-06T16:34:31,399 copying build/lib.linux-armv7l-cpython-39/nngt/generation/connectors.py -> build/bdist.linux-armv7l/wheel/nngt/generation 2024-02-06T16:34:31,401 copying build/lib.linux-armv7l-cpython-39/nngt/generation/cconnect.pxd -> build/bdist.linux-armv7l/wheel/nngt/generation 2024-02-06T16:34:31,403 copying build/lib.linux-armv7l-cpython-39/nngt/generation/rewiring.py -> build/bdist.linux-armv7l/wheel/nngt/generation 2024-02-06T16:34:31,406 creating build/bdist.linux-armv7l/wheel/nngt/geospatial 2024-02-06T16:34:31,407 copying build/lib.linux-armv7l-cpython-39/nngt/geospatial/plot.py -> build/bdist.linux-armv7l/wheel/nngt/geospatial 2024-02-06T16:34:31,409 copying build/lib.linux-armv7l-cpython-39/nngt/geospatial/__init__.py -> build/bdist.linux-armv7l/wheel/nngt/geospatial 2024-02-06T16:34:31,410 copying build/lib.linux-armv7l-cpython-39/nngt/geospatial/countries.py -> build/bdist.linux-armv7l/wheel/nngt/geospatial 2024-02-06T16:34:31,413 creating build/bdist.linux-armv7l/wheel/nngt/analysis 2024-02-06T16:34:31,413 copying build/lib.linux-armv7l-cpython-39/nngt/analysis/graph_analysis.py -> build/bdist.linux-armv7l/wheel/nngt/analysis 2024-02-06T16:34:31,416 copying build/lib.linux-armv7l-cpython-39/nngt/analysis/clustering.py -> build/bdist.linux-armv7l/wheel/nngt/analysis 2024-02-06T16:34:31,419 copying build/lib.linux-armv7l-cpython-39/nngt/analysis/gt_functions.py -> build/bdist.linux-armv7l/wheel/nngt/analysis 2024-02-06T16:34:31,422 copying build/lib.linux-armv7l-cpython-39/nngt/analysis/nx_functions.py -> build/bdist.linux-armv7l/wheel/nngt/analysis 2024-02-06T16:34:31,425 copying build/lib.linux-armv7l-cpython-39/nngt/analysis/nngt_functions.py -> build/bdist.linux-armv7l/wheel/nngt/analysis 2024-02-06T16:34:31,427 copying build/lib.linux-armv7l-cpython-39/nngt/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/nngt/analysis 2024-02-06T16:34:31,428 copying build/lib.linux-armv7l-cpython-39/nngt/analysis/ig_functions.py -> build/bdist.linux-armv7l/wheel/nngt/analysis 2024-02-06T16:34:31,431 copying build/lib.linux-armv7l-cpython-39/nngt/analysis/activity_analysis.py -> build/bdist.linux-armv7l/wheel/nngt/analysis 2024-02-06T16:34:31,433 copying build/lib.linux-armv7l-cpython-39/nngt/analysis/bayesian_blocks.py -> build/bdist.linux-armv7l/wheel/nngt/analysis 2024-02-06T16:34:31,436 copying build/lib.linux-armv7l-cpython-39/nngt/nngt.conf.default -> build/bdist.linux-armv7l/wheel/nngt 2024-02-06T16:34:31,437 copying build/lib.linux-armv7l-cpython-39/nngt/__init__.py -> build/bdist.linux-armv7l/wheel/nngt 2024-02-06T16:34:31,440 creating build/bdist.linux-armv7l/wheel/nngt/core 2024-02-06T16:34:31,441 copying build/lib.linux-armv7l-cpython-39/nngt/core/connections.py -> build/bdist.linux-armv7l/wheel/nngt/core 2024-02-06T16:34:31,443 copying build/lib.linux-armv7l-cpython-39/nngt/core/graph_interface.py -> build/bdist.linux-armv7l/wheel/nngt/core 2024-02-06T16:34:31,445 copying build/lib.linux-armv7l-cpython-39/nngt/core/gt_graph.py -> build/bdist.linux-armv7l/wheel/nngt/core 2024-02-06T16:34:31,448 copying build/lib.linux-armv7l-cpython-39/nngt/core/ig_graph.py -> build/bdist.linux-armv7l/wheel/nngt/core 2024-02-06T16:34:31,451 copying build/lib.linux-armv7l-cpython-39/nngt/core/graph.py -> build/bdist.linux-armv7l/wheel/nngt/core 2024-02-06T16:34:31,455 copying build/lib.linux-armv7l-cpython-39/nngt/core/neural_pop_group.py -> build/bdist.linux-armv7l/wheel/nngt/core 2024-02-06T16:34:31,458 copying build/lib.linux-armv7l-cpython-39/nngt/core/__init__.py -> build/bdist.linux-armv7l/wheel/nngt/core 2024-02-06T16:34:31,459 copying build/lib.linux-armv7l-cpython-39/nngt/core/group_structure.py -> build/bdist.linux-armv7l/wheel/nngt/core 2024-02-06T16:34:31,462 copying build/lib.linux-armv7l-cpython-39/nngt/core/nngt_graph.py -> build/bdist.linux-armv7l/wheel/nngt/core 2024-02-06T16:34:31,465 copying build/lib.linux-armv7l-cpython-39/nngt/core/nx_graph.py -> build/bdist.linux-armv7l/wheel/nngt/core 2024-02-06T16:34:31,468 copying build/lib.linux-armv7l-cpython-39/nngt/core/networks.py -> build/bdist.linux-armv7l/wheel/nngt/core 2024-02-06T16:34:31,470 copying build/lib.linux-armv7l-cpython-39/nngt/core/spatial_graph.py -> build/bdist.linux-armv7l/wheel/nngt/core 2024-02-06T16:34:31,473 creating build/bdist.linux-armv7l/wheel/nngt/lib 2024-02-06T16:34:31,473 copying build/lib.linux-armv7l-cpython-39/nngt/lib/graph_helpers.py -> build/bdist.linux-armv7l/wheel/nngt/lib 2024-02-06T16:34:31,476 copying build/lib.linux-armv7l-cpython-39/nngt/lib/logger.py -> build/bdist.linux-armv7l/wheel/nngt/lib 2024-02-06T16:34:31,478 copying build/lib.linux-armv7l-cpython-39/nngt/lib/errors.py -> build/bdist.linux-armv7l/wheel/nngt/lib 2024-02-06T16:34:31,479 copying build/lib.linux-armv7l-cpython-39/nngt/lib/constants.py -> build/bdist.linux-armv7l/wheel/nngt/lib 2024-02-06T16:34:31,481 copying build/lib.linux-armv7l-cpython-39/nngt/lib/connect_tools.py -> build/bdist.linux-armv7l/wheel/nngt/lib 2024-02-06T16:34:31,483 copying build/lib.linux-armv7l-cpython-39/nngt/lib/sorting.py -> build/bdist.linux-armv7l/wheel/nngt/lib 2024-02-06T16:34:31,485 copying build/lib.linux-armv7l-cpython-39/nngt/lib/graph_backends.py -> build/bdist.linux-armv7l/wheel/nngt/lib 2024-02-06T16:34:31,487 copying build/lib.linux-armv7l-cpython-39/nngt/lib/_frozendict.py -> build/bdist.linux-armv7l/wheel/nngt/lib 2024-02-06T16:34:31,489 copying build/lib.linux-armv7l-cpython-39/nngt/lib/__init__.py -> build/bdist.linux-armv7l/wheel/nngt/lib 2024-02-06T16:34:31,491 copying build/lib.linux-armv7l-cpython-39/nngt/lib/rng_tools.py -> build/bdist.linux-armv7l/wheel/nngt/lib 2024-02-06T16:34:31,493 copying build/lib.linux-armv7l-cpython-39/nngt/lib/nngt_config.py -> build/bdist.linux-armv7l/wheel/nngt/lib 2024-02-06T16:34:31,495 copying build/lib.linux-armv7l-cpython-39/nngt/lib/converters.py -> build/bdist.linux-armv7l/wheel/nngt/lib 2024-02-06T16:34:31,497 copying build/lib.linux-armv7l-cpython-39/nngt/lib/test_functions.py -> build/bdist.linux-armv7l/wheel/nngt/lib 2024-02-06T16:34:31,499 copying build/lib.linux-armv7l-cpython-39/nngt/lib/db_tools.py -> build/bdist.linux-armv7l/wheel/nngt/lib 2024-02-06T16:34:31,501 copying build/lib.linux-armv7l-cpython-39/nngt/lib/decorator.py -> build/bdist.linux-armv7l/wheel/nngt/lib 2024-02-06T16:34:31,504 creating build/bdist.linux-armv7l/wheel/nngt/database 2024-02-06T16:34:31,504 copying build/lib.linux-armv7l-cpython-39/nngt/database/pickle_field.py -> build/bdist.linux-armv7l/wheel/nngt/database 2024-02-06T16:34:31,506 copying build/lib.linux-armv7l-cpython-39/nngt/database/__init__.py -> build/bdist.linux-armv7l/wheel/nngt/database 2024-02-06T16:34:31,508 copying build/lib.linux-armv7l-cpython-39/nngt/database/db_generation.py -> build/bdist.linux-armv7l/wheel/nngt/database 2024-02-06T16:34:31,510 copying build/lib.linux-armv7l-cpython-39/nngt/database/csv_utils.py -> build/bdist.linux-armv7l/wheel/nngt/database 2024-02-06T16:34:31,512 copying build/lib.linux-armv7l-cpython-39/nngt/database/db_main.py -> build/bdist.linux-armv7l/wheel/nngt/database 2024-02-06T16:34:31,515 creating build/bdist.linux-armv7l/wheel/nngt/simulation 2024-02-06T16:34:31,516 copying build/lib.linux-armv7l-cpython-39/nngt/simulation/nest_utils.py -> build/bdist.linux-armv7l/wheel/nngt/simulation 2024-02-06T16:34:31,519 copying build/lib.linux-armv7l-cpython-39/nngt/simulation/nest_plot.py -> build/bdist.linux-armv7l/wheel/nngt/simulation 2024-02-06T16:34:31,521 copying build/lib.linux-armv7l-cpython-39/nngt/simulation/__init__.py -> build/bdist.linux-armv7l/wheel/nngt/simulation 2024-02-06T16:34:31,524 copying build/lib.linux-armv7l-cpython-39/nngt/simulation/nest_graph.py -> build/bdist.linux-armv7l/wheel/nngt/simulation 2024-02-06T16:34:31,526 copying build/lib.linux-armv7l-cpython-39/nngt/simulation/nest_activity.py -> build/bdist.linux-armv7l/wheel/nngt/simulation 2024-02-06T16:34:31,529 creating build/bdist.linux-armv7l/wheel/nngt/io 2024-02-06T16:34:31,530 copying build/lib.linux-armv7l-cpython-39/nngt/io/graph_saving.py -> build/bdist.linux-armv7l/wheel/nngt/io 2024-02-06T16:34:31,533 copying build/lib.linux-armv7l-cpython-39/nngt/io/saving_helpers.py -> build/bdist.linux-armv7l/wheel/nngt/io 2024-02-06T16:34:31,535 copying build/lib.linux-armv7l-cpython-39/nngt/io/loading_helpers.py -> build/bdist.linux-armv7l/wheel/nngt/io 2024-02-06T16:34:31,537 copying build/lib.linux-armv7l-cpython-39/nngt/io/graph_loading.py -> build/bdist.linux-armv7l/wheel/nngt/io 2024-02-06T16:34:31,540 copying build/lib.linux-armv7l-cpython-39/nngt/io/io_helpers.py -> build/bdist.linux-armv7l/wheel/nngt/io 2024-02-06T16:34:31,542 copying build/lib.linux-armv7l-cpython-39/nngt/io/__init__.py -> build/bdist.linux-armv7l/wheel/nngt/io 2024-02-06T16:34:31,544 creating build/bdist.linux-armv7l/wheel/nngt/geometry 2024-02-06T16:34:31,545 copying build/lib.linux-armv7l-cpython-39/nngt/geometry/svgtools.py -> build/bdist.linux-armv7l/wheel/nngt/geometry 2024-02-06T16:34:31,547 copying build/lib.linux-armv7l-cpython-39/nngt/geometry/dxftools.py -> build/bdist.linux-armv7l/wheel/nngt/geometry 2024-02-06T16:34:31,549 creating build/bdist.linux-armv7l/wheel/nngt/geometry/dxf_import 2024-02-06T16:34:31,550 copying build/lib.linux-armv7l-cpython-39/nngt/geometry/dxf_import/read_dxf.py -> build/bdist.linux-armv7l/wheel/nngt/geometry/dxf_import 2024-02-06T16:34:31,552 copying build/lib.linux-armv7l-cpython-39/nngt/geometry/dxf_import/homcoord.py -> build/bdist.linux-armv7l/wheel/nngt/geometry/dxf_import 2024-02-06T16:34:31,555 copying build/lib.linux-armv7l-cpython-39/nngt/geometry/dxf_import/__init__.py -> build/bdist.linux-armv7l/wheel/nngt/geometry/dxf_import 2024-02-06T16:34:31,556 copying build/lib.linux-armv7l-cpython-39/nngt/geometry/backup_shape.py -> build/bdist.linux-armv7l/wheel/nngt/geometry 2024-02-06T16:34:31,559 copying build/lib.linux-armv7l-cpython-39/nngt/geometry/pync_log.py -> build/bdist.linux-armv7l/wheel/nngt/geometry 2024-02-06T16:34:31,561 copying build/lib.linux-armv7l-cpython-39/nngt/geometry/plot.py -> build/bdist.linux-armv7l/wheel/nngt/geometry 2024-02-06T16:34:31,563 copying build/lib.linux-armv7l-cpython-39/nngt/geometry/geom_utils.py -> build/bdist.linux-armv7l/wheel/nngt/geometry 2024-02-06T16:34:31,564 copying build/lib.linux-armv7l-cpython-39/nngt/geometry/README.md -> build/bdist.linux-armv7l/wheel/nngt/geometry 2024-02-06T16:34:31,566 copying build/lib.linux-armv7l-cpython-39/nngt/geometry/__init__.py -> build/bdist.linux-armv7l/wheel/nngt/geometry 2024-02-06T16:34:31,568 copying build/lib.linux-armv7l-cpython-39/nngt/geometry/shape_io.py -> build/bdist.linux-armv7l/wheel/nngt/geometry 2024-02-06T16:34:31,570 copying build/lib.linux-armv7l-cpython-39/nngt/geometry/units.py -> build/bdist.linux-armv7l/wheel/nngt/geometry 2024-02-06T16:34:31,572 copying build/lib.linux-armv7l-cpython-39/nngt/geometry/tools.py -> build/bdist.linux-armv7l/wheel/nngt/geometry 2024-02-06T16:34:31,574 creating build/bdist.linux-armv7l/wheel/nngt/geometry/examples 2024-02-06T16:34:31,575 copying build/lib.linux-armv7l-cpython-39/nngt/geometry/examples/backup_shape.py -> build/bdist.linux-armv7l/wheel/nngt/geometry/examples 2024-02-06T16:34:31,577 copying build/lib.linux-armv7l-cpython-39/nngt/geometry/examples/gen_obstacles.py -> build/bdist.linux-armv7l/wheel/nngt/geometry/examples 2024-02-06T16:34:31,579 copying build/lib.linux-armv7l-cpython-39/nngt/geometry/examples/load_shapes.py -> build/bdist.linux-armv7l/wheel/nngt/geometry/examples 2024-02-06T16:34:31,580 copying build/lib.linux-armv7l-cpython-39/nngt/geometry/examples/load_culture.py -> build/bdist.linux-armv7l/wheel/nngt/geometry/examples 2024-02-06T16:34:31,582 copying build/lib.linux-armv7l-cpython-39/nngt/geometry/triangulate.py -> build/bdist.linux-armv7l/wheel/nngt/geometry 2024-02-06T16:34:31,584 copying build/lib.linux-armv7l-cpython-39/nngt/geometry/shape.py -> build/bdist.linux-armv7l/wheel/nngt/geometry 2024-02-06T16:34:31,588 creating build/bdist.linux-armv7l/wheel/nngt/plot 2024-02-06T16:34:31,589 creating build/bdist.linux-armv7l/wheel/nngt/plot/chord_diag 2024-02-06T16:34:31,590 copying build/lib.linux-armv7l-cpython-39/nngt/plot/chord_diag/example.py -> build/bdist.linux-armv7l/wheel/nngt/plot/chord_diag 2024-02-06T16:34:31,592 copying build/lib.linux-armv7l-cpython-39/nngt/plot/chord_diag/README.md -> build/bdist.linux-armv7l/wheel/nngt/plot/chord_diag 2024-02-06T16:34:31,594 copying build/lib.linux-armv7l-cpython-39/nngt/plot/chord_diag/utilities.py -> build/bdist.linux-armv7l/wheel/nngt/plot/chord_diag 2024-02-06T16:34:31,596 copying build/lib.linux-armv7l-cpython-39/nngt/plot/chord_diag/__init__.py -> build/bdist.linux-armv7l/wheel/nngt/plot/chord_diag 2024-02-06T16:34:31,597 copying build/lib.linux-armv7l-cpython-39/nngt/plot/chord_diag/chord_diagram.py -> build/bdist.linux-armv7l/wheel/nngt/plot/chord_diag 2024-02-06T16:34:31,600 copying build/lib.linux-armv7l-cpython-39/nngt/plot/chord_diag/gradient.py -> build/bdist.linux-armv7l/wheel/nngt/plot/chord_diag 2024-02-06T16:34:31,601 copying build/lib.linux-armv7l-cpython-39/nngt/plot/custom_plt.py -> build/bdist.linux-armv7l/wheel/nngt/plot 2024-02-06T16:34:31,603 copying build/lib.linux-armv7l-cpython-39/nngt/plot/plt_networks.py -> build/bdist.linux-armv7l/wheel/nngt/plot 2024-02-06T16:34:31,607 copying build/lib.linux-armv7l-cpython-39/nngt/plot/hive_helpers.py -> build/bdist.linux-armv7l/wheel/nngt/plot 2024-02-06T16:34:31,609 copying build/lib.linux-armv7l-cpython-39/nngt/plot/__init__.py -> build/bdist.linux-armv7l/wheel/nngt/plot 2024-02-06T16:34:31,611 copying build/lib.linux-armv7l-cpython-39/nngt/plot/animations.py -> build/bdist.linux-armv7l/wheel/nngt/plot 2024-02-06T16:34:31,613 copying build/lib.linux-armv7l-cpython-39/nngt/plot/plt_properties.py -> build/bdist.linux-armv7l/wheel/nngt/plot 2024-02-06T16:34:31,616 running install_egg_info 2024-02-06T16:34:31,621 running egg_info 2024-02-06T16:34:31,625 writing NNGT.egg-info/PKG-INFO 2024-02-06T16:34:31,628 /tmp/pip-build-env-0hk8_hmd/overlay/lib/python3.9/site-packages/setuptools/_core_metadata.py:157: SetuptoolsDeprecationWarning: Invalid config. 2024-02-06T16:34:31,628 !! 2024-02-06T16:34:31,628 ******************************************************************************** 2024-02-06T16:34:31,628 newlines are not allowed in `summary` and will break in the future 2024-02-06T16:34:31,628 ******************************************************************************** 2024-02-06T16:34:31,629 !! 2024-02-06T16:34:31,629 write_field('Summary', single_line(summary)) 2024-02-06T16:34:31,641 writing dependency_links to NNGT.egg-info/dependency_links.txt 2024-02-06T16:34:31,647 writing requirements to NNGT.egg-info/requires.txt 2024-02-06T16:34:31,648 writing top-level names to NNGT.egg-info/top_level.txt 2024-02-06T16:34:31,682 dependency /tmp/pip-build-env-0hk8_hmd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-02-06T16:34:31,682 dependency /tmp/pip-build-env-0hk8_hmd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-02-06T16:34:31,683 dependency /tmp/pip-build-env-0hk8_hmd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-02-06T16:34:31,683 dependency /tmp/pip-build-env-0hk8_hmd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-02-06T16:34:31,683 dependency /tmp/pip-build-env-0hk8_hmd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-02-06T16:34:31,688 reading manifest file 'NNGT.egg-info/SOURCES.txt' 2024-02-06T16:34:31,693 reading manifest template 'MANIFEST.in' 2024-02-06T16:34:31,800 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2024-02-06T16:34:31,802 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2024-02-06T16:34:31,802 adding license file 'LICENSES/BSD-2-Clause.txt' 2024-02-06T16:34:31,803 adding license file 'LICENSES/CC-BY-SA-4.0.txt' 2024-02-06T16:34:31,803 adding license file 'LICENSES/CC0-1.0.txt' 2024-02-06T16:34:31,803 adding license file 'LICENSES/GPL-3.0-or-later.txt' 2024-02-06T16:34:31,803 adding license file 'LICENSES/Python-2.0.txt' 2024-02-06T16:34:31,810 writing manifest file 'NNGT.egg-info/SOURCES.txt' 2024-02-06T16:34:31,812 Copying NNGT.egg-info to build/bdist.linux-armv7l/wheel/NNGT-2.7.3-py3.9.egg-info 2024-02-06T16:34:31,823 running install_scripts 2024-02-06T16:34:31,893 creating build/bdist.linux-armv7l/wheel/NNGT-2.7.3.dist-info/WHEEL 2024-02-06T16:34:31,896 creating '/tmp/pip-wheel-a2exybqi/.tmp-zndeiukp/NNGT-2.7.3-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-02-06T16:34:31,900 adding 'nngt/__init__.py' 2024-02-06T16:34:31,902 adding 'nngt/nngt.conf.default' 2024-02-06T16:34:31,904 adding 'nngt/analysis/__init__.py' 2024-02-06T16:34:31,906 adding 'nngt/analysis/activity_analysis.py' 2024-02-06T16:34:31,908 adding 'nngt/analysis/bayesian_blocks.py' 2024-02-06T16:34:31,911 adding 'nngt/analysis/clustering.py' 2024-02-06T16:34:31,916 adding 'nngt/analysis/graph_analysis.py' 2024-02-06T16:34:31,920 adding 'nngt/analysis/gt_functions.py' 2024-02-06T16:34:31,923 adding 'nngt/analysis/ig_functions.py' 2024-02-06T16:34:31,924 adding 'nngt/analysis/nngt_functions.py' 2024-02-06T16:34:31,927 adding 'nngt/analysis/nx_functions.py' 2024-02-06T16:34:31,929 adding 'nngt/core/__init__.py' 2024-02-06T16:34:31,931 adding 'nngt/core/connections.py' 2024-02-06T16:34:31,939 adding 'nngt/core/graph.py' 2024-02-06T16:34:31,941 adding 'nngt/core/graph_interface.py' 2024-02-06T16:34:31,944 adding 'nngt/core/group_structure.py' 2024-02-06T16:34:31,948 adding 'nngt/core/gt_graph.py' 2024-02-06T16:34:31,951 adding 'nngt/core/ig_graph.py' 2024-02-06T16:34:31,954 adding 'nngt/core/networks.py' 2024-02-06T16:34:31,959 adding 'nngt/core/neural_pop_group.py' 2024-02-06T16:34:31,963 adding 'nngt/core/nngt_graph.py' 2024-02-06T16:34:31,967 adding 'nngt/core/nx_graph.py' 2024-02-06T16:34:31,969 adding 'nngt/core/spatial_graph.py' 2024-02-06T16:34:31,971 adding 'nngt/database/__init__.py' 2024-02-06T16:34:31,973 adding 'nngt/database/csv_utils.py' 2024-02-06T16:34:31,974 adding 'nngt/database/db_generation.py' 2024-02-06T16:34:31,977 adding 'nngt/database/db_main.py' 2024-02-06T16:34:31,978 adding 'nngt/database/pickle_field.py' 2024-02-06T16:34:31,980 adding 'nngt/generation/__init__.py' 2024-02-06T16:34:32,576 adding 'nngt/generation/cconnect.cpython-39-arm-linux-gnueabihf.so' 2024-02-06T16:34:32,597 adding 'nngt/generation/cconnect.pxd' 2024-02-06T16:34:32,600 adding 'nngt/generation/cconnect.pyx' 2024-02-06T16:34:32,601 adding 'nngt/generation/cconnect.pyxbld' 2024-02-06T16:34:32,605 adding 'nngt/generation/connect_algorithms.py' 2024-02-06T16:34:32,607 adding 'nngt/generation/connectors.py' 2024-02-06T16:34:32,609 adding 'nngt/generation/func_connect.cpp' 2024-02-06T16:34:32,611 adding 'nngt/generation/func_connect.h' 2024-02-06T16:34:32,617 adding 'nngt/generation/graph_connectivity.py' 2024-02-06T16:34:32,619 adding 'nngt/generation/mpi_connect.py' 2024-02-06T16:34:32,622 adding 'nngt/generation/rewiring.py' 2024-02-06T16:34:32,624 adding 'nngt/geometry/README.md' 2024-02-06T16:34:32,625 adding 'nngt/geometry/__init__.py' 2024-02-06T16:34:32,628 adding 'nngt/geometry/backup_shape.py' 2024-02-06T16:34:32,629 adding 'nngt/geometry/dxftools.py' 2024-02-06T16:34:32,630 adding 'nngt/geometry/geom_utils.py' 2024-02-06T16:34:32,632 adding 'nngt/geometry/plot.py' 2024-02-06T16:34:32,633 adding 'nngt/geometry/pync_log.py' 2024-02-06T16:34:32,639 adding 'nngt/geometry/shape.py' 2024-02-06T16:34:32,641 adding 'nngt/geometry/shape_io.py' 2024-02-06T16:34:32,643 adding 'nngt/geometry/svgtools.py' 2024-02-06T16:34:32,644 adding 'nngt/geometry/tools.py' 2024-02-06T16:34:32,646 adding 'nngt/geometry/triangulate.py' 2024-02-06T16:34:32,647 adding 'nngt/geometry/units.py' 2024-02-06T16:34:32,649 adding 'nngt/geometry/dxf_import/__init__.py' 2024-02-06T16:34:32,652 adding 'nngt/geometry/dxf_import/homcoord.py' 2024-02-06T16:34:32,653 adding 'nngt/geometry/dxf_import/read_dxf.py' 2024-02-06T16:34:32,655 adding 'nngt/geometry/examples/backup_shape.py' 2024-02-06T16:34:32,656 adding 'nngt/geometry/examples/gen_obstacles.py' 2024-02-06T16:34:32,658 adding 'nngt/geometry/examples/load_culture.py' 2024-02-06T16:34:32,659 adding 'nngt/geometry/examples/load_shapes.py' 2024-02-06T16:34:32,661 adding 'nngt/geospatial/__init__.py' 2024-02-06T16:34:32,662 adding 'nngt/geospatial/countries.py' 2024-02-06T16:34:32,664 adding 'nngt/geospatial/plot.py' 2024-02-06T16:34:32,666 adding 'nngt/io/__init__.py' 2024-02-06T16:34:32,668 adding 'nngt/io/graph_loading.py' 2024-02-06T16:34:32,670 adding 'nngt/io/graph_saving.py' 2024-02-06T16:34:32,671 adding 'nngt/io/io_helpers.py' 2024-02-06T16:34:32,673 adding 'nngt/io/loading_helpers.py' 2024-02-06T16:34:32,675 adding 'nngt/io/saving_helpers.py' 2024-02-06T16:34:32,677 adding 'nngt/lib/__init__.py' 2024-02-06T16:34:32,678 adding 'nngt/lib/_frozendict.py' 2024-02-06T16:34:32,680 adding 'nngt/lib/connect_tools.py' 2024-02-06T16:34:32,681 adding 'nngt/lib/constants.py' 2024-02-06T16:34:32,683 adding 'nngt/lib/converters.py' 2024-02-06T16:34:32,684 adding 'nngt/lib/db_tools.py' 2024-02-06T16:34:32,686 adding 'nngt/lib/decorator.py' 2024-02-06T16:34:32,688 adding 'nngt/lib/errors.py' 2024-02-06T16:34:32,689 adding 'nngt/lib/graph_backends.py' 2024-02-06T16:34:32,691 adding 'nngt/lib/graph_helpers.py' 2024-02-06T16:34:32,693 adding 'nngt/lib/logger.py' 2024-02-06T16:34:32,695 adding 'nngt/lib/nngt_config.py' 2024-02-06T16:34:32,697 adding 'nngt/lib/rng_tools.py' 2024-02-06T16:34:32,698 adding 'nngt/lib/sorting.py' 2024-02-06T16:34:32,700 adding 'nngt/lib/test_functions.py' 2024-02-06T16:34:32,702 adding 'nngt/plot/__init__.py' 2024-02-06T16:34:32,706 adding 'nngt/plot/animations.py' 2024-02-06T16:34:32,707 adding 'nngt/plot/custom_plt.py' 2024-02-06T16:34:32,709 adding 'nngt/plot/hive_helpers.py' 2024-02-06T16:34:32,721 adding 'nngt/plot/plt_networks.py' 2024-02-06T16:34:32,725 adding 'nngt/plot/plt_properties.py' 2024-02-06T16:34:32,728 adding 'nngt/plot/chord_diag/README.md' 2024-02-06T16:34:32,729 adding 'nngt/plot/chord_diag/__init__.py' 2024-02-06T16:34:32,732 adding 'nngt/plot/chord_diag/chord_diagram.py' 2024-02-06T16:34:32,733 adding 'nngt/plot/chord_diag/example.py' 2024-02-06T16:34:32,735 adding 'nngt/plot/chord_diag/gradient.py' 2024-02-06T16:34:32,736 adding 'nngt/plot/chord_diag/utilities.py' 2024-02-06T16:34:32,738 adding 'nngt/simulation/__init__.py' 2024-02-06T16:34:32,741 adding 'nngt/simulation/nest_activity.py' 2024-02-06T16:34:32,743 adding 'nngt/simulation/nest_graph.py' 2024-02-06T16:34:32,747 adding 'nngt/simulation/nest_plot.py' 2024-02-06T16:34:32,749 adding 'nngt/simulation/nest_utils.py' 2024-02-06T16:34:32,751 adding 'NNGT-2.7.3.dist-info/BSD-2-Clause.txt' 2024-02-06T16:34:32,753 adding 'NNGT-2.7.3.dist-info/CC-BY-SA-4.0.txt' 2024-02-06T16:34:32,755 adding 'NNGT-2.7.3.dist-info/CC0-1.0.txt' 2024-02-06T16:34:32,761 adding 'NNGT-2.7.3.dist-info/GPL-3.0-or-later.txt' 2024-02-06T16:34:32,768 adding 'NNGT-2.7.3.dist-info/METADATA' 2024-02-06T16:34:32,770 adding 'NNGT-2.7.3.dist-info/Python-2.0.txt' 2024-02-06T16:34:32,771 adding 'NNGT-2.7.3.dist-info/WHEEL' 2024-02-06T16:34:32,771 adding 'NNGT-2.7.3.dist-info/top_level.txt' 2024-02-06T16:34:32,773 adding 'NNGT-2.7.3.dist-info/RECORD' 2024-02-06T16:34:32,800 removing build/bdist.linux-armv7l/wheel 2024-02-06T16:34:33,006 Building wheel for nngt (pyproject.toml): finished with status 'done' 2024-02-06T16:34:33,052 Created wheel for nngt: filename=NNGT-2.7.3-cp39-cp39-linux_armv7l.whl size=1551456 sha256=f4cec3bc5b95ff3ab6f6fe8e7991667f22d7b82cd3c5d5f142a43f697d88ab7c 2024-02-06T16:34:33,053 Stored in directory: /tmp/pip-ephem-wheel-cache-577sdfy7/wheels/e5/c0/ca/6231066866b5169851ab5a3e90652c6aa6f4693d48bfb55d82 2024-02-06T16:34:33,075 Successfully built nngt 2024-02-06T16:34:33,125 Removed build tracker: '/tmp/pip-build-tracker-s4_7b7so'