2024-02-09T06:00:39,707 Created temporary directory: /tmp/pip-build-tracker-utpfky05 2024-02-09T06:00:39,708 Initialized build tracking at /tmp/pip-build-tracker-utpfky05 2024-02-09T06:00:39,709 Created build tracker: /tmp/pip-build-tracker-utpfky05 2024-02-09T06:00:39,709 Entered build tracker: /tmp/pip-build-tracker-utpfky05 2024-02-09T06:00:39,710 Created temporary directory: /tmp/pip-wheel-xlv66s_7 2024-02-09T06:00:39,713 Created temporary directory: /tmp/pip-ephem-wheel-cache-ggcon6w9 2024-02-09T06:00:39,736 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-02-09T06:00:39,740 2 location(s) to search for versions of hecatomb: 2024-02-09T06:00:39,740 * https://pypi.org/simple/hecatomb/ 2024-02-09T06:00:39,740 * https://www.piwheels.org/simple/hecatomb/ 2024-02-09T06:00:39,741 Fetching project page and analyzing links: https://pypi.org/simple/hecatomb/ 2024-02-09T06:00:39,741 Getting page https://pypi.org/simple/hecatomb/ 2024-02-09T06:00:39,743 Found index url https://pypi.org/simple/ 2024-02-09T06:00:39,958 Fetched page https://pypi.org/simple/hecatomb/ as application/vnd.pypi.simple.v1+json 2024-02-09T06:00:39,961 Skipping link: No binaries permitted for hecatomb: https://files.pythonhosted.org/packages/cd/63/aaa5ce961dbf2daa1babcfd88326eb999b63b3d9b697762955b278494d51/hecatomb-1.2.0-py3-none-any.whl (from https://pypi.org/simple/hecatomb/) (requires-python:>=3.7) 2024-02-09T06:00:39,962 Found link https://files.pythonhosted.org/packages/e4/8a/60abbe18523fcf27f997b4b5e25499d58a76e6a17cb2343787c4853050f9/hecatomb-1.2.0.tar.gz (from https://pypi.org/simple/hecatomb/) (requires-python:>=3.7), version: 1.2.0 2024-02-09T06:00:39,963 Skipping link: No binaries permitted for hecatomb: https://files.pythonhosted.org/packages/6b/f0/3284cfa8ff54616784442f04b2532d7276a58b3eb2417cfd15def8e0c56f/hecatomb-1.3.0-py3-none-any.whl (from https://pypi.org/simple/hecatomb/) (requires-python:>=3.9) 2024-02-09T06:00:39,963 Found link https://files.pythonhosted.org/packages/ce/56/2dab4a7325b279174f9da6f0a213f655f4e031363974e67130ffc24261e8/hecatomb-1.3.0.tar.gz (from https://pypi.org/simple/hecatomb/) (requires-python:>=3.9), version: 1.3.0 2024-02-09T06:00:39,964 Skipping link: No binaries permitted for hecatomb: https://files.pythonhosted.org/packages/a2/7d/dc077ab4a55c89c38c2fb9d38deb3db7e7fdcff5efad9f51c11e689eaedb/hecatomb-1.3.1-py3-none-any.whl (from https://pypi.org/simple/hecatomb/) (requires-python:>=3.9) 2024-02-09T06:00:39,965 Found link https://files.pythonhosted.org/packages/9c/4a/d3baa63f70267bbfa3112d1af6dc491e105aa4dbf41f9a44c69b8c07111f/hecatomb-1.3.1.tar.gz (from https://pypi.org/simple/hecatomb/) (requires-python:>=3.9), version: 1.3.1 2024-02-09T06:00:39,966 Skipping link: No binaries permitted for hecatomb: https://files.pythonhosted.org/packages/35/f5/da7aae250963fd15d6dc9680a056045db375096be2d680f91e42352530ef/hecatomb-1.3.2-py3-none-any.whl (from https://pypi.org/simple/hecatomb/) (requires-python:>=3.9) 2024-02-09T06:00:39,967 Found link https://files.pythonhosted.org/packages/d2/05/5afc0f3a18a2ccd8b34f6c087a276f941d0e285833c9b2a7b6d8a62d4c5a/hecatomb-1.3.2.tar.gz (from https://pypi.org/simple/hecatomb/) (requires-python:>=3.9), version: 1.3.2 2024-02-09T06:00:39,968 Fetching project page and analyzing links: https://www.piwheels.org/simple/hecatomb/ 2024-02-09T06:00:39,968 Getting page https://www.piwheels.org/simple/hecatomb/ 2024-02-09T06:00:39,970 Found index url https://www.piwheels.org/simple/ 2024-02-09T06:00:40,139 Fetched page https://www.piwheels.org/simple/hecatomb/ as text/html 2024-02-09T06:00:40,142 Skipping link: No binaries permitted for hecatomb: https://www.piwheels.org/simple/hecatomb/hecatomb-1.3.1-py3-none-any.whl#sha256=8f0817abc80281adfc7773bdc4a03ddc88bf1432032a5e8440dba75f23489930 (from https://www.piwheels.org/simple/hecatomb/) (requires-python:>=3.9) 2024-02-09T06:00:40,142 Skipping link: No binaries permitted for hecatomb: https://www.piwheels.org/simple/hecatomb/hecatomb-1.3.0-py3-none-any.whl#sha256=7c88ee5207d15214efcf06eab485fc2b867d86cc43648f88f8ca409228d62d42 (from https://www.piwheels.org/simple/hecatomb/) (requires-python:>=3.9) 2024-02-09T06:00:40,143 Skipping link: No binaries permitted for hecatomb: https://www.piwheels.org/simple/hecatomb/hecatomb-1.2.0-py3-none-any.whl#sha256=ad0eaa01aaa37d90124282fa20269ed0e9153ae6f03c8ab3f713b7245f58e98b (from https://www.piwheels.org/simple/hecatomb/) (requires-python:>=3.7) 2024-02-09T06:00:40,144 Skipping link: not a file: https://www.piwheels.org/simple/hecatomb/ 2024-02-09T06:00:40,144 Skipping link: not a file: https://pypi.org/simple/hecatomb/ 2024-02-09T06:00:40,164 Given no hashes to check 1 links for project 'hecatomb': discarding no candidates 2024-02-09T06:00:40,183 Collecting hecatomb==1.3.2 2024-02-09T06:00:40,185 Created temporary directory: /tmp/pip-unpack-ij2b4cys 2024-02-09T06:00:40,640 Downloading hecatomb-1.3.2.tar.gz (98.5 MB) 2024-02-09T06:01:01,444 Added hecatomb==1.3.2 from https://files.pythonhosted.org/packages/d2/05/5afc0f3a18a2ccd8b34f6c087a276f941d0e285833c9b2a7b6d8a62d4c5a/hecatomb-1.3.2.tar.gz to build tracker '/tmp/pip-build-tracker-utpfky05' 2024-02-09T06:01:01,447 Running setup.py (path:/tmp/pip-wheel-xlv66s_7/hecatomb_869af537093d4f40b6ae8c40c1246be8/setup.py) egg_info for package hecatomb 2024-02-09T06:01:01,448 Created temporary directory: /tmp/pip-pip-egg-info-sbsv4teg 2024-02-09T06:01:01,449 Preparing metadata (setup.py): started 2024-02-09T06:01:01,450 Running command python setup.py egg_info 2024-02-09T06:01:02,777 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:314: InformationOnly: Normalizing 'v1.3.2' to '1.3.2' 2024-02-09T06:01:02,777 self.metadata.version = self._normalize_version(self.metadata.version) 2024-02-09T06:01:02,826 running egg_info 2024-02-09T06:01:02,827 creating /tmp/pip-pip-egg-info-sbsv4teg/hecatomb.egg-info 2024-02-09T06:01:02,861 writing /tmp/pip-pip-egg-info-sbsv4teg/hecatomb.egg-info/PKG-INFO 2024-02-09T06:01:02,865 writing dependency_links to /tmp/pip-pip-egg-info-sbsv4teg/hecatomb.egg-info/dependency_links.txt 2024-02-09T06:01:02,866 writing entry points to /tmp/pip-pip-egg-info-sbsv4teg/hecatomb.egg-info/entry_points.txt 2024-02-09T06:01:02,867 writing requirements to /tmp/pip-pip-egg-info-sbsv4teg/hecatomb.egg-info/requires.txt 2024-02-09T06:01:02,868 writing top-level names to /tmp/pip-pip-egg-info-sbsv4teg/hecatomb.egg-info/top_level.txt 2024-02-09T06:01:02,872 writing manifest file '/tmp/pip-pip-egg-info-sbsv4teg/hecatomb.egg-info/SOURCES.txt' 2024-02-09T06:01:02,944 file hecatomb.py (for module hecatomb) not found 2024-02-09T06:01:02,979 reading manifest file '/tmp/pip-pip-egg-info-sbsv4teg/hecatomb.egg-info/SOURCES.txt' 2024-02-09T06:01:02,980 reading manifest template 'MANIFEST.in' 2024-02-09T06:01:03,023 warning: no previously-included files matching '*' found under directory 'hecatomb/snakemake/conda/' 2024-02-09T06:01:03,023 warning: no previously-included files matching '*' found under directory 'hecatomb/snakemake/databases/' 2024-02-09T06:01:03,024 adding license file 'LICENSE' 2024-02-09T06:01:03,028 writing manifest file '/tmp/pip-pip-egg-info-sbsv4teg/hecatomb.egg-info/SOURCES.txt' 2024-02-09T06:01:03,134 Preparing metadata (setup.py): finished with status 'done' 2024-02-09T06:01:03,139 Source in /tmp/pip-wheel-xlv66s_7/hecatomb_869af537093d4f40b6ae8c40c1246be8 has version 1.3.2, which satisfies requirement hecatomb==1.3.2 from https://files.pythonhosted.org/packages/d2/05/5afc0f3a18a2ccd8b34f6c087a276f941d0e285833c9b2a7b6d8a62d4c5a/hecatomb-1.3.2.tar.gz 2024-02-09T06:01:03,139 Removed hecatomb==1.3.2 from https://files.pythonhosted.org/packages/d2/05/5afc0f3a18a2ccd8b34f6c087a276f941d0e285833c9b2a7b6d8a62d4c5a/hecatomb-1.3.2.tar.gz from build tracker '/tmp/pip-build-tracker-utpfky05' 2024-02-09T06:01:03,146 Created temporary directory: /tmp/pip-unpack-bu7l0i3x 2024-02-09T06:01:03,147 Created temporary directory: /tmp/pip-unpack-f_1kjlyh 2024-02-09T06:01:03,159 Building wheels for collected packages: hecatomb 2024-02-09T06:01:03,164 Created temporary directory: /tmp/pip-wheel-4gsjc77j 2024-02-09T06:01:03,164 Building wheel for hecatomb (setup.py): started 2024-02-09T06:01:03,166 Destination directory: /tmp/pip-wheel-4gsjc77j 2024-02-09T06:01:03,166 Running command python setup.py bdist_wheel 2024-02-09T06:01:04,201 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:314: InformationOnly: Normalizing 'v1.3.2' to '1.3.2' 2024-02-09T06:01:04,202 self.metadata.version = self._normalize_version(self.metadata.version) 2024-02-09T06:01:04,243 running bdist_wheel 2024-02-09T06:01:04,593 running build 2024-02-09T06:01:04,593 running build_py 2024-02-09T06:01:04,629 file hecatomb.py (for module hecatomb) not found 2024-02-09T06:01:04,630 creating build 2024-02-09T06:01:04,631 creating build/lib 2024-02-09T06:01:04,631 creating build/lib/hecatomb 2024-02-09T06:01:04,633 copying hecatomb/__main__.py -> build/lib/hecatomb 2024-02-09T06:01:04,635 copying hecatomb/__init__.py -> build/lib/hecatomb 2024-02-09T06:01:04,636 running egg_info 2024-02-09T06:01:04,711 writing hecatomb.egg-info/PKG-INFO 2024-02-09T06:01:04,715 writing dependency_links to hecatomb.egg-info/dependency_links.txt 2024-02-09T06:01:04,716 writing entry points to hecatomb.egg-info/entry_points.txt 2024-02-09T06:01:04,717 writing requirements to hecatomb.egg-info/requires.txt 2024-02-09T06:01:04,719 writing top-level names to hecatomb.egg-info/top_level.txt 2024-02-09T06:01:04,721 file hecatomb.py (for module hecatomb) not found 2024-02-09T06:01:04,755 reading manifest file 'hecatomb.egg-info/SOURCES.txt' 2024-02-09T06:01:04,758 reading manifest template 'MANIFEST.in' 2024-02-09T06:01:04,797 warning: no previously-included files matching '*' found under directory 'hecatomb/snakemake/conda/' 2024-02-09T06:01:04,798 warning: no previously-included files matching '*' found under directory 'hecatomb/snakemake/databases/' 2024-02-09T06:01:04,798 adding license file 'LICENSE' 2024-02-09T06:01:04,803 writing manifest file 'hecatomb.egg-info/SOURCES.txt' 2024-02-09T06:01:04,806 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'hecatomb.snakemake.config' is absent from the `packages` configuration. 2024-02-09T06:01:04,806 !! 2024-02-09T06:01:04,808 ******************************************************************************** 2024-02-09T06:01:04,808 ############################ 2024-02-09T06:01:04,809 # Package would be ignored # 2024-02-09T06:01:04,809 ############################ 2024-02-09T06:01:04,810 Python recognizes 'hecatomb.snakemake.config' as an importable package[^1], 2024-02-09T06:01:04,811 but it is absent from setuptools' `packages` configuration. 2024-02-09T06:01:04,812 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-09T06:01:04,812 package, please make sure that 'hecatomb.snakemake.config' is explicitly added 2024-02-09T06:01:04,813 to the `packages` configuration field. 2024-02-09T06:01:04,814 Alternatively, you can also rely on setuptools' discovery methods 2024-02-09T06:01:04,815 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-09T06:01:04,815 instead of `find_packages(...)`/`find:`). 2024-02-09T06:01:04,816 You can read more about "package discovery" on setuptools documentation page: 2024-02-09T06:01:04,817 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-09T06:01:04,818 If you don't want 'hecatomb.snakemake.config' to be distributed and are 2024-02-09T06:01:04,819 already explicitly excluding 'hecatomb.snakemake.config' via 2024-02-09T06:01:04,819 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-09T06:01:04,820 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-09T06:01:04,821 combination with a more fine grained `package-data` configuration. 2024-02-09T06:01:04,822 You can read more about "package data files" on setuptools documentation page: 2024-02-09T06:01:04,823 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-09T06:01:04,825 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-09T06:01:04,825 even if it does not contain any `.py` files. 2024-02-09T06:01:04,825 On the other hand, currently there is no concept of package data 2024-02-09T06:01:04,826 directory, all directories are treated like packages. 2024-02-09T06:01:04,826 ******************************************************************************** 2024-02-09T06:01:04,827 !! 2024-02-09T06:01:04,827 check.warn(importable) 2024-02-09T06:01:04,828 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'hecatomb.snakemake.profile.default' is absent from the `packages` configuration. 2024-02-09T06:01:04,828 !! 2024-02-09T06:01:04,829 ******************************************************************************** 2024-02-09T06:01:04,830 ############################ 2024-02-09T06:01:04,830 # Package would be ignored # 2024-02-09T06:01:04,830 ############################ 2024-02-09T06:01:04,831 Python recognizes 'hecatomb.snakemake.profile.default' as an importable package[^1], 2024-02-09T06:01:04,831 but it is absent from setuptools' `packages` configuration. 2024-02-09T06:01:04,832 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-09T06:01:04,833 package, please make sure that 'hecatomb.snakemake.profile.default' is explicitly added 2024-02-09T06:01:04,833 to the `packages` configuration field. 2024-02-09T06:01:04,834 Alternatively, you can also rely on setuptools' discovery methods 2024-02-09T06:01:04,835 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-09T06:01:04,835 instead of `find_packages(...)`/`find:`). 2024-02-09T06:01:04,836 You can read more about "package discovery" on setuptools documentation page: 2024-02-09T06:01:04,837 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-09T06:01:04,838 If you don't want 'hecatomb.snakemake.profile.default' to be distributed and are 2024-02-09T06:01:04,838 already explicitly excluding 'hecatomb.snakemake.profile.default' via 2024-02-09T06:01:04,839 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-09T06:01:04,839 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-09T06:01:04,840 combination with a more fine grained `package-data` configuration. 2024-02-09T06:01:04,841 You can read more about "package data files" on setuptools documentation page: 2024-02-09T06:01:04,842 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-09T06:01:04,843 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-09T06:01:04,844 even if it does not contain any `.py` files. 2024-02-09T06:01:04,844 On the other hand, currently there is no concept of package data 2024-02-09T06:01:04,845 directory, all directories are treated like packages. 2024-02-09T06:01:04,845 ******************************************************************************** 2024-02-09T06:01:04,846 !! 2024-02-09T06:01:04,847 check.warn(importable) 2024-02-09T06:01:04,847 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'hecatomb.snakemake.profile.example_slurm' is absent from the `packages` configuration. 2024-02-09T06:01:04,848 !! 2024-02-09T06:01:04,849 ******************************************************************************** 2024-02-09T06:01:04,850 ############################ 2024-02-09T06:01:04,850 # Package would be ignored # 2024-02-09T06:01:04,851 ############################ 2024-02-09T06:01:04,851 Python recognizes 'hecatomb.snakemake.profile.example_slurm' as an importable package[^1], 2024-02-09T06:01:04,851 but it is absent from setuptools' `packages` configuration. 2024-02-09T06:01:04,852 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-09T06:01:04,853 package, please make sure that 'hecatomb.snakemake.profile.example_slurm' is explicitly added 2024-02-09T06:01:04,853 to the `packages` configuration field. 2024-02-09T06:01:04,854 Alternatively, you can also rely on setuptools' discovery methods 2024-02-09T06:01:04,854 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-09T06:01:04,854 instead of `find_packages(...)`/`find:`). 2024-02-09T06:01:04,855 You can read more about "package discovery" on setuptools documentation page: 2024-02-09T06:01:04,856 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-09T06:01:04,857 If you don't want 'hecatomb.snakemake.profile.example_slurm' to be distributed and are 2024-02-09T06:01:04,858 already explicitly excluding 'hecatomb.snakemake.profile.example_slurm' via 2024-02-09T06:01:04,858 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-09T06:01:04,858 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-09T06:01:04,859 combination with a more fine grained `package-data` configuration. 2024-02-09T06:01:04,860 You can read more about "package data files" on setuptools documentation page: 2024-02-09T06:01:04,861 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-09T06:01:04,862 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-09T06:01:04,863 even if it does not contain any `.py` files. 2024-02-09T06:01:04,863 On the other hand, currently there is no concept of package data 2024-02-09T06:01:04,864 directory, all directories are treated like packages. 2024-02-09T06:01:04,864 ******************************************************************************** 2024-02-09T06:01:04,865 !! 2024-02-09T06:01:04,865 check.warn(importable) 2024-02-09T06:01:04,866 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'hecatomb.snakemake.workflow' is absent from the `packages` configuration. 2024-02-09T06:01:04,866 !! 2024-02-09T06:01:04,867 ******************************************************************************** 2024-02-09T06:01:04,868 ############################ 2024-02-09T06:01:04,868 # Package would be ignored # 2024-02-09T06:01:04,869 ############################ 2024-02-09T06:01:04,869 Python recognizes 'hecatomb.snakemake.workflow' as an importable package[^1], 2024-02-09T06:01:04,870 but it is absent from setuptools' `packages` configuration. 2024-02-09T06:01:04,871 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-09T06:01:04,871 package, please make sure that 'hecatomb.snakemake.workflow' is explicitly added 2024-02-09T06:01:04,872 to the `packages` configuration field. 2024-02-09T06:01:04,873 Alternatively, you can also rely on setuptools' discovery methods 2024-02-09T06:01:04,873 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-09T06:01:04,874 instead of `find_packages(...)`/`find:`). 2024-02-09T06:01:04,875 You can read more about "package discovery" on setuptools documentation page: 2024-02-09T06:01:04,876 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-09T06:01:04,877 If you don't want 'hecatomb.snakemake.workflow' to be distributed and are 2024-02-09T06:01:04,877 already explicitly excluding 'hecatomb.snakemake.workflow' via 2024-02-09T06:01:04,878 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-09T06:01:04,878 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-09T06:01:04,879 combination with a more fine grained `package-data` configuration. 2024-02-09T06:01:04,879 You can read more about "package data files" on setuptools documentation page: 2024-02-09T06:01:04,880 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-09T06:01:04,881 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-09T06:01:04,882 even if it does not contain any `.py` files. 2024-02-09T06:01:04,882 On the other hand, currently there is no concept of package data 2024-02-09T06:01:04,883 directory, all directories are treated like packages. 2024-02-09T06:01:04,883 ******************************************************************************** 2024-02-09T06:01:04,884 !! 2024-02-09T06:01:04,884 check.warn(importable) 2024-02-09T06:01:04,885 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'hecatomb.snakemake.workflow.envs' is absent from the `packages` configuration. 2024-02-09T06:01:04,885 !! 2024-02-09T06:01:04,886 ******************************************************************************** 2024-02-09T06:01:04,886 ############################ 2024-02-09T06:01:04,887 # Package would be ignored # 2024-02-09T06:01:04,888 ############################ 2024-02-09T06:01:04,888 Python recognizes 'hecatomb.snakemake.workflow.envs' as an importable package[^1], 2024-02-09T06:01:04,889 but it is absent from setuptools' `packages` configuration. 2024-02-09T06:01:04,890 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-09T06:01:04,890 package, please make sure that 'hecatomb.snakemake.workflow.envs' is explicitly added 2024-02-09T06:01:04,891 to the `packages` configuration field. 2024-02-09T06:01:04,892 Alternatively, you can also rely on setuptools' discovery methods 2024-02-09T06:01:04,892 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-09T06:01:04,893 instead of `find_packages(...)`/`find:`). 2024-02-09T06:01:04,894 You can read more about "package discovery" on setuptools documentation page: 2024-02-09T06:01:04,895 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-09T06:01:04,896 If you don't want 'hecatomb.snakemake.workflow.envs' to be distributed and are 2024-02-09T06:01:04,896 already explicitly excluding 'hecatomb.snakemake.workflow.envs' via 2024-02-09T06:01:04,897 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-09T06:01:04,897 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-09T06:01:04,898 combination with a more fine grained `package-data` configuration. 2024-02-09T06:01:04,899 You can read more about "package data files" on setuptools documentation page: 2024-02-09T06:01:04,900 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-09T06:01:04,901 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-09T06:01:04,902 even if it does not contain any `.py` files. 2024-02-09T06:01:04,902 On the other hand, currently there is no concept of package data 2024-02-09T06:01:04,903 directory, all directories are treated like packages. 2024-02-09T06:01:04,903 ******************************************************************************** 2024-02-09T06:01:04,905 !! 2024-02-09T06:01:04,905 check.warn(importable) 2024-02-09T06:01:04,905 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'hecatomb.snakemake.workflow.report' is absent from the `packages` configuration. 2024-02-09T06:01:04,906 !! 2024-02-09T06:01:04,906 ******************************************************************************** 2024-02-09T06:01:04,907 ############################ 2024-02-09T06:01:04,907 # Package would be ignored # 2024-02-09T06:01:04,908 ############################ 2024-02-09T06:01:04,908 Python recognizes 'hecatomb.snakemake.workflow.report' as an importable package[^1], 2024-02-09T06:01:04,908 but it is absent from setuptools' `packages` configuration. 2024-02-09T06:01:04,909 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-09T06:01:04,909 package, please make sure that 'hecatomb.snakemake.workflow.report' is explicitly added 2024-02-09T06:01:04,910 to the `packages` configuration field. 2024-02-09T06:01:04,911 Alternatively, you can also rely on setuptools' discovery methods 2024-02-09T06:01:04,911 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-09T06:01:04,912 instead of `find_packages(...)`/`find:`). 2024-02-09T06:01:04,912 You can read more about "package discovery" on setuptools documentation page: 2024-02-09T06:01:04,913 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-09T06:01:04,914 If you don't want 'hecatomb.snakemake.workflow.report' to be distributed and are 2024-02-09T06:01:04,915 already explicitly excluding 'hecatomb.snakemake.workflow.report' via 2024-02-09T06:01:04,915 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-09T06:01:04,916 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-09T06:01:04,916 combination with a more fine grained `package-data` configuration. 2024-02-09T06:01:04,917 You can read more about "package data files" on setuptools documentation page: 2024-02-09T06:01:04,918 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-09T06:01:04,919 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-09T06:01:04,920 even if it does not contain any `.py` files. 2024-02-09T06:01:04,920 On the other hand, currently there is no concept of package data 2024-02-09T06:01:04,921 directory, all directories are treated like packages. 2024-02-09T06:01:04,921 ******************************************************************************** 2024-02-09T06:01:04,922 !! 2024-02-09T06:01:04,923 check.warn(importable) 2024-02-09T06:01:04,923 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'hecatomb.snakemake.workflow.rules.annotation' is absent from the `packages` configuration. 2024-02-09T06:01:04,924 !! 2024-02-09T06:01:04,925 ******************************************************************************** 2024-02-09T06:01:04,925 ############################ 2024-02-09T06:01:04,926 # Package would be ignored # 2024-02-09T06:01:04,926 ############################ 2024-02-09T06:01:04,927 Python recognizes 'hecatomb.snakemake.workflow.rules.annotation' as an importable package[^1], 2024-02-09T06:01:04,927 but it is absent from setuptools' `packages` configuration. 2024-02-09T06:01:04,928 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-09T06:01:04,929 package, please make sure that 'hecatomb.snakemake.workflow.rules.annotation' is explicitly added 2024-02-09T06:01:04,929 to the `packages` configuration field. 2024-02-09T06:01:04,931 Alternatively, you can also rely on setuptools' discovery methods 2024-02-09T06:01:04,931 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-09T06:01:04,932 instead of `find_packages(...)`/`find:`). 2024-02-09T06:01:04,932 You can read more about "package discovery" on setuptools documentation page: 2024-02-09T06:01:04,933 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-09T06:01:04,934 If you don't want 'hecatomb.snakemake.workflow.rules.annotation' to be distributed and are 2024-02-09T06:01:04,934 already explicitly excluding 'hecatomb.snakemake.workflow.rules.annotation' via 2024-02-09T06:01:04,935 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-09T06:01:04,935 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-09T06:01:04,936 combination with a more fine grained `package-data` configuration. 2024-02-09T06:01:04,936 You can read more about "package data files" on setuptools documentation page: 2024-02-09T06:01:04,937 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-09T06:01:04,939 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-09T06:01:04,939 even if it does not contain any `.py` files. 2024-02-09T06:01:04,939 On the other hand, currently there is no concept of package data 2024-02-09T06:01:04,940 directory, all directories are treated like packages. 2024-02-09T06:01:04,940 ******************************************************************************** 2024-02-09T06:01:04,941 !! 2024-02-09T06:01:04,942 check.warn(importable) 2024-02-09T06:01:04,942 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'hecatomb.snakemake.workflow.rules.assembly' is absent from the `packages` configuration. 2024-02-09T06:01:04,943 !! 2024-02-09T06:01:04,944 ******************************************************************************** 2024-02-09T06:01:04,945 ############################ 2024-02-09T06:01:04,945 # Package would be ignored # 2024-02-09T06:01:04,945 ############################ 2024-02-09T06:01:04,946 Python recognizes 'hecatomb.snakemake.workflow.rules.assembly' as an importable package[^1], 2024-02-09T06:01:04,946 but it is absent from setuptools' `packages` configuration. 2024-02-09T06:01:04,947 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-09T06:01:04,948 package, please make sure that 'hecatomb.snakemake.workflow.rules.assembly' is explicitly added 2024-02-09T06:01:04,948 to the `packages` configuration field. 2024-02-09T06:01:04,949 Alternatively, you can also rely on setuptools' discovery methods 2024-02-09T06:01:04,950 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-09T06:01:04,950 instead of `find_packages(...)`/`find:`). 2024-02-09T06:01:04,951 You can read more about "package discovery" on setuptools documentation page: 2024-02-09T06:01:04,952 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-09T06:01:04,953 If you don't want 'hecatomb.snakemake.workflow.rules.assembly' to be distributed and are 2024-02-09T06:01:04,953 already explicitly excluding 'hecatomb.snakemake.workflow.rules.assembly' via 2024-02-09T06:01:04,954 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-09T06:01:04,954 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-09T06:01:04,955 combination with a more fine grained `package-data` configuration. 2024-02-09T06:01:04,956 You can read more about "package data files" on setuptools documentation page: 2024-02-09T06:01:04,957 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-09T06:01:04,958 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-09T06:01:04,959 even if it does not contain any `.py` files. 2024-02-09T06:01:04,959 On the other hand, currently there is no concept of package data 2024-02-09T06:01:04,960 directory, all directories are treated like packages. 2024-02-09T06:01:04,960 ******************************************************************************** 2024-02-09T06:01:04,961 !! 2024-02-09T06:01:04,961 check.warn(importable) 2024-02-09T06:01:04,962 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'hecatomb.snakemake.workflow.rules.preflight' is absent from the `packages` configuration. 2024-02-09T06:01:04,962 !! 2024-02-09T06:01:04,963 ******************************************************************************** 2024-02-09T06:01:04,963 ############################ 2024-02-09T06:01:04,964 # Package would be ignored # 2024-02-09T06:01:04,964 ############################ 2024-02-09T06:01:04,964 Python recognizes 'hecatomb.snakemake.workflow.rules.preflight' as an importable package[^1], 2024-02-09T06:01:04,965 but it is absent from setuptools' `packages` configuration. 2024-02-09T06:01:04,966 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-09T06:01:04,966 package, please make sure that 'hecatomb.snakemake.workflow.rules.preflight' is explicitly added 2024-02-09T06:01:04,967 to the `packages` configuration field. 2024-02-09T06:01:04,968 Alternatively, you can also rely on setuptools' discovery methods 2024-02-09T06:01:04,968 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-09T06:01:04,969 instead of `find_packages(...)`/`find:`). 2024-02-09T06:01:04,970 You can read more about "package discovery" on setuptools documentation page: 2024-02-09T06:01:04,970 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-09T06:01:04,971 If you don't want 'hecatomb.snakemake.workflow.rules.preflight' to be distributed and are 2024-02-09T06:01:04,972 already explicitly excluding 'hecatomb.snakemake.workflow.rules.preflight' via 2024-02-09T06:01:04,972 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-09T06:01:04,973 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-09T06:01:04,973 combination with a more fine grained `package-data` configuration. 2024-02-09T06:01:04,974 You can read more about "package data files" on setuptools documentation page: 2024-02-09T06:01:04,975 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-09T06:01:04,977 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-09T06:01:04,977 even if it does not contain any `.py` files. 2024-02-09T06:01:04,978 On the other hand, currently there is no concept of package data 2024-02-09T06:01:04,978 directory, all directories are treated like packages. 2024-02-09T06:01:04,979 ******************************************************************************** 2024-02-09T06:01:04,979 !! 2024-02-09T06:01:04,980 check.warn(importable) 2024-02-09T06:01:04,980 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'hecatomb.snakemake.workflow.rules.preprocessing' is absent from the `packages` configuration. 2024-02-09T06:01:04,981 !! 2024-02-09T06:01:04,982 ******************************************************************************** 2024-02-09T06:01:04,982 ############################ 2024-02-09T06:01:04,983 # Package would be ignored # 2024-02-09T06:01:04,984 ############################ 2024-02-09T06:01:04,984 Python recognizes 'hecatomb.snakemake.workflow.rules.preprocessing' as an importable package[^1], 2024-02-09T06:01:04,985 but it is absent from setuptools' `packages` configuration. 2024-02-09T06:01:04,985 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-09T06:01:04,986 package, please make sure that 'hecatomb.snakemake.workflow.rules.preprocessing' is explicitly added 2024-02-09T06:01:04,986 to the `packages` configuration field. 2024-02-09T06:01:04,987 Alternatively, you can also rely on setuptools' discovery methods 2024-02-09T06:01:04,987 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-09T06:01:04,988 instead of `find_packages(...)`/`find:`). 2024-02-09T06:01:04,989 You can read more about "package discovery" on setuptools documentation page: 2024-02-09T06:01:04,990 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-09T06:01:04,990 If you don't want 'hecatomb.snakemake.workflow.rules.preprocessing' to be distributed and are 2024-02-09T06:01:04,991 already explicitly excluding 'hecatomb.snakemake.workflow.rules.preprocessing' via 2024-02-09T06:01:04,991 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-09T06:01:04,992 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-09T06:01:04,992 combination with a more fine grained `package-data` configuration. 2024-02-09T06:01:04,993 You can read more about "package data files" on setuptools documentation page: 2024-02-09T06:01:04,994 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-09T06:01:04,995 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-09T06:01:04,995 even if it does not contain any `.py` files. 2024-02-09T06:01:04,996 On the other hand, currently there is no concept of package data 2024-02-09T06:01:04,996 directory, all directories are treated like packages. 2024-02-09T06:01:04,997 ******************************************************************************** 2024-02-09T06:01:04,998 !! 2024-02-09T06:01:04,998 check.warn(importable) 2024-02-09T06:01:04,999 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'hecatomb.snakemake.workflow.rules.reports' is absent from the `packages` configuration. 2024-02-09T06:01:04,999 !! 2024-02-09T06:01:05,000 ******************************************************************************** 2024-02-09T06:01:05,001 ############################ 2024-02-09T06:01:05,001 # Package would be ignored # 2024-02-09T06:01:05,002 ############################ 2024-02-09T06:01:05,002 Python recognizes 'hecatomb.snakemake.workflow.rules.reports' as an importable package[^1], 2024-02-09T06:01:05,003 but it is absent from setuptools' `packages` configuration. 2024-02-09T06:01:05,004 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-09T06:01:05,004 package, please make sure that 'hecatomb.snakemake.workflow.rules.reports' is explicitly added 2024-02-09T06:01:05,005 to the `packages` configuration field. 2024-02-09T06:01:05,006 Alternatively, you can also rely on setuptools' discovery methods 2024-02-09T06:01:05,006 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-09T06:01:05,007 instead of `find_packages(...)`/`find:`). 2024-02-09T06:01:05,008 You can read more about "package discovery" on setuptools documentation page: 2024-02-09T06:01:05,009 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-09T06:01:05,010 If you don't want 'hecatomb.snakemake.workflow.rules.reports' to be distributed and are 2024-02-09T06:01:05,010 already explicitly excluding 'hecatomb.snakemake.workflow.rules.reports' via 2024-02-09T06:01:05,011 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-09T06:01:05,011 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-09T06:01:05,012 combination with a more fine grained `package-data` configuration. 2024-02-09T06:01:05,012 You can read more about "package data files" on setuptools documentation page: 2024-02-09T06:01:05,013 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-09T06:01:05,014 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-09T06:01:05,015 even if it does not contain any `.py` files. 2024-02-09T06:01:05,015 On the other hand, currently there is no concept of package data 2024-02-09T06:01:05,016 directory, all directories are treated like packages. 2024-02-09T06:01:05,016 ******************************************************************************** 2024-02-09T06:01:05,017 !! 2024-02-09T06:01:05,018 check.warn(importable) 2024-02-09T06:01:05,018 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'hecatomb.snakemake.workflow.scripts' is absent from the `packages` configuration. 2024-02-09T06:01:05,019 !! 2024-02-09T06:01:05,020 ******************************************************************************** 2024-02-09T06:01:05,020 ############################ 2024-02-09T06:01:05,021 # Package would be ignored # 2024-02-09T06:01:05,021 ############################ 2024-02-09T06:01:05,022 Python recognizes 'hecatomb.snakemake.workflow.scripts' as an importable package[^1], 2024-02-09T06:01:05,022 but it is absent from setuptools' `packages` configuration. 2024-02-09T06:01:05,024 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-09T06:01:05,024 package, please make sure that 'hecatomb.snakemake.workflow.scripts' is explicitly added 2024-02-09T06:01:05,025 to the `packages` configuration field. 2024-02-09T06:01:05,026 Alternatively, you can also rely on setuptools' discovery methods 2024-02-09T06:01:05,027 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-09T06:01:05,027 instead of `find_packages(...)`/`find:`). 2024-02-09T06:01:05,029 You can read more about "package discovery" on setuptools documentation page: 2024-02-09T06:01:05,030 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-09T06:01:05,031 If you don't want 'hecatomb.snakemake.workflow.scripts' to be distributed and are 2024-02-09T06:01:05,032 already explicitly excluding 'hecatomb.snakemake.workflow.scripts' via 2024-02-09T06:01:05,032 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-09T06:01:05,033 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-09T06:01:05,033 combination with a more fine grained `package-data` configuration. 2024-02-09T06:01:05,034 You can read more about "package data files" on setuptools documentation page: 2024-02-09T06:01:05,035 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-09T06:01:05,037 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-09T06:01:05,038 even if it does not contain any `.py` files. 2024-02-09T06:01:05,039 On the other hand, currently there is no concept of package data 2024-02-09T06:01:05,044 directory, all directories are treated like packages. 2024-02-09T06:01:05,054 ******************************************************************************** 2024-02-09T06:01:05,086 !! 2024-02-09T06:01:05,088 check.warn(importable) 2024-02-09T06:01:05,089 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'hecatomb.test_data' is absent from the `packages` configuration. 2024-02-09T06:01:05,089 !! 2024-02-09T06:01:05,090 ******************************************************************************** 2024-02-09T06:01:05,091 ############################ 2024-02-09T06:01:05,094 # Package would be ignored # 2024-02-09T06:01:05,095 ############################ 2024-02-09T06:01:05,095 Python recognizes 'hecatomb.test_data' as an importable package[^1], 2024-02-09T06:01:05,096 but it is absent from setuptools' `packages` configuration. 2024-02-09T06:01:05,096 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-09T06:01:05,097 package, please make sure that 'hecatomb.test_data' is explicitly added 2024-02-09T06:01:05,097 to the `packages` configuration field. 2024-02-09T06:01:05,098 Alternatively, you can also rely on setuptools' discovery methods 2024-02-09T06:01:05,099 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-09T06:01:05,099 instead of `find_packages(...)`/`find:`). 2024-02-09T06:01:05,100 You can read more about "package discovery" on setuptools documentation page: 2024-02-09T06:01:05,101 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-09T06:01:05,102 If you don't want 'hecatomb.test_data' to be distributed and are 2024-02-09T06:01:05,103 already explicitly excluding 'hecatomb.test_data' via 2024-02-09T06:01:05,103 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-09T06:01:05,104 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-09T06:01:05,104 combination with a more fine grained `package-data` configuration. 2024-02-09T06:01:05,106 You can read more about "package data files" on setuptools documentation page: 2024-02-09T06:01:05,107 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-09T06:01:05,109 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-09T06:01:05,110 even if it does not contain any `.py` files. 2024-02-09T06:01:05,110 On the other hand, currently there is no concept of package data 2024-02-09T06:01:05,111 directory, all directories are treated like packages. 2024-02-09T06:01:05,111 ******************************************************************************** 2024-02-09T06:01:05,127 !! 2024-02-09T06:01:05,128 check.warn(importable) 2024-02-09T06:01:05,131 copying hecatomb/hecatomb.CITATION -> build/lib/hecatomb 2024-02-09T06:01:05,135 copying hecatomb/hecatomb.LICENSE -> build/lib/hecatomb 2024-02-09T06:01:05,140 copying hecatomb/hecatomb.VERSION -> build/lib/hecatomb 2024-02-09T06:01:05,153 creating build/lib/hecatomb/snakemake 2024-02-09T06:01:05,164 creating build/lib/hecatomb/snakemake/config 2024-02-09T06:01:05,166 copying hecatomb/snakemake/config/config.yaml -> build/lib/hecatomb/snakemake/config 2024-02-09T06:01:05,167 copying hecatomb/snakemake/config/dbFiles.yaml -> build/lib/hecatomb/snakemake/config 2024-02-09T06:01:05,168 copying hecatomb/snakemake/config/immutable.yaml -> build/lib/hecatomb/snakemake/config 2024-02-09T06:01:05,174 creating build/lib/hecatomb/snakemake/profile 2024-02-09T06:01:05,175 creating build/lib/hecatomb/snakemake/profile/default 2024-02-09T06:01:05,176 copying hecatomb/snakemake/profile/default/config.yaml -> build/lib/hecatomb/snakemake/profile/default 2024-02-09T06:01:05,176 creating build/lib/hecatomb/snakemake/profile/example_slurm 2024-02-09T06:01:05,177 copying hecatomb/snakemake/profile/example_slurm/config.yaml -> build/lib/hecatomb/snakemake/profile/example_slurm 2024-02-09T06:01:05,178 copying hecatomb/snakemake/profile/example_slurm/slurm-status.py -> build/lib/hecatomb/snakemake/profile/example_slurm 2024-02-09T06:01:05,178 creating build/lib/hecatomb/snakemake/workflow 2024-02-09T06:01:05,179 copying hecatomb/snakemake/workflow/AddHost.smk -> build/lib/hecatomb/snakemake/workflow 2024-02-09T06:01:05,179 copying hecatomb/snakemake/workflow/DownloadDB.smk -> build/lib/hecatomb/snakemake/workflow 2024-02-09T06:01:05,180 copying hecatomb/snakemake/workflow/Hecatomb.smk -> build/lib/hecatomb/snakemake/workflow 2024-02-09T06:01:05,180 copying hecatomb/snakemake/workflow/combineOutputs.smk -> build/lib/hecatomb/snakemake/workflow 2024-02-09T06:01:05,180 creating build/lib/hecatomb/snakemake/workflow/envs 2024-02-09T06:01:05,181 copying hecatomb/snakemake/workflow/envs/bbmap.yaml -> build/lib/hecatomb/snakemake/workflow/envs 2024-02-09T06:01:05,181 copying hecatomb/snakemake/workflow/envs/bedtools.yaml -> build/lib/hecatomb/snakemake/workflow/envs 2024-02-09T06:01:05,182 copying hecatomb/snakemake/workflow/envs/canu.yaml -> build/lib/hecatomb/snakemake/workflow/envs 2024-02-09T06:01:05,182 copying hecatomb/snakemake/workflow/envs/curl.yaml -> build/lib/hecatomb/snakemake/workflow/envs 2024-02-09T06:01:05,183 copying hecatomb/snakemake/workflow/envs/koverage.yaml -> build/lib/hecatomb/snakemake/workflow/envs 2024-02-09T06:01:05,183 copying hecatomb/snakemake/workflow/envs/krona.yaml -> build/lib/hecatomb/snakemake/workflow/envs 2024-02-09T06:01:05,184 copying hecatomb/snakemake/workflow/envs/megahit.yaml -> build/lib/hecatomb/snakemake/workflow/envs 2024-02-09T06:01:05,184 copying hecatomb/snakemake/workflow/envs/metaflye.yaml -> build/lib/hecatomb/snakemake/workflow/envs 2024-02-09T06:01:05,185 copying hecatomb/snakemake/workflow/envs/minimap2.yaml -> build/lib/hecatomb/snakemake/workflow/envs 2024-02-09T06:01:05,186 copying hecatomb/snakemake/workflow/envs/mmseqs2.yaml -> build/lib/hecatomb/snakemake/workflow/envs 2024-02-09T06:01:05,186 copying hecatomb/snakemake/workflow/envs/pigz.yaml -> build/lib/hecatomb/snakemake/workflow/envs 2024-02-09T06:01:05,187 copying hecatomb/snakemake/workflow/envs/pysam.yaml -> build/lib/hecatomb/snakemake/workflow/envs 2024-02-09T06:01:05,187 copying hecatomb/snakemake/workflow/envs/samtools.yaml -> build/lib/hecatomb/snakemake/workflow/envs 2024-02-09T06:01:05,188 copying hecatomb/snakemake/workflow/envs/seqkit.yaml -> build/lib/hecatomb/snakemake/workflow/envs 2024-02-09T06:01:05,189 copying hecatomb/snakemake/workflow/envs/trimnami.yaml -> build/lib/hecatomb/snakemake/workflow/envs 2024-02-09T06:01:05,190 creating build/lib/hecatomb/snakemake/workflow/report 2024-02-09T06:01:05,190 copying hecatomb/snakemake/workflow/report/host_removed_counts.rst -> build/lib/hecatomb/snakemake/workflow/report 2024-02-09T06:01:05,191 copying hecatomb/snakemake/workflow/report/mapped_counts.rst -> build/lib/hecatomb/snakemake/workflow/report 2024-02-09T06:01:05,191 copying hecatomb/snakemake/workflow/report/nucleotide_annotations.rst -> build/lib/hecatomb/snakemake/workflow/report 2024-02-09T06:01:05,192 copying hecatomb/snakemake/workflow/report/protein_annotations.rst -> build/lib/hecatomb/snakemake/workflow/report 2024-02-09T06:01:05,194 copying hecatomb/snakemake/workflow/report/raw_read_counts.rst -> build/lib/hecatomb/snakemake/workflow/report 2024-02-09T06:01:05,196 copying hecatomb/snakemake/workflow/report/sankey.rst -> build/lib/hecatomb/snakemake/workflow/report 2024-02-09T06:01:05,197 copying hecatomb/snakemake/workflow/report/step07.rst -> build/lib/hecatomb/snakemake/workflow/report 2024-02-09T06:01:05,199 copying hecatomb/snakemake/workflow/report/step08.rst -> build/lib/hecatomb/snakemake/workflow/report 2024-02-09T06:01:05,199 copying hecatomb/snakemake/workflow/report/step09.rst -> build/lib/hecatomb/snakemake/workflow/report 2024-02-09T06:01:05,200 copying hecatomb/snakemake/workflow/report/step10.rst -> build/lib/hecatomb/snakemake/workflow/report 2024-02-09T06:01:05,201 copying hecatomb/snakemake/workflow/report/step11.rst -> build/lib/hecatomb/snakemake/workflow/report 2024-02-09T06:01:05,201 copying hecatomb/snakemake/workflow/report/step12.rst -> build/lib/hecatomb/snakemake/workflow/report 2024-02-09T06:01:05,202 copying hecatomb/snakemake/workflow/report/step13.rst -> build/lib/hecatomb/snakemake/workflow/report 2024-02-09T06:01:05,202 copying hecatomb/snakemake/workflow/report/summary_table.rst -> build/lib/hecatomb/snakemake/workflow/report 2024-02-09T06:01:05,203 copying hecatomb/snakemake/workflow/report/tax_level_counts.rst -> build/lib/hecatomb/snakemake/workflow/report 2024-02-09T06:01:05,203 copying hecatomb/snakemake/workflow/report/unclassified_seqtable.rst -> build/lib/hecatomb/snakemake/workflow/report 2024-02-09T06:01:05,204 creating build/lib/hecatomb/snakemake/workflow/rules 2024-02-09T06:01:05,205 creating build/lib/hecatomb/snakemake/workflow/rules/annotation 2024-02-09T06:01:05,205 copying hecatomb/snakemake/workflow/rules/annotation/contig_annotation.smk -> build/lib/hecatomb/snakemake/workflow/rules/annotation 2024-02-09T06:01:05,206 copying hecatomb/snakemake/workflow/rules/annotation/contig_mapping.smk -> build/lib/hecatomb/snakemake/workflow/rules/annotation 2024-02-09T06:01:05,206 copying hecatomb/snakemake/workflow/rules/annotation/read_annotation.smk -> build/lib/hecatomb/snakemake/workflow/rules/annotation 2024-02-09T06:01:05,207 creating build/lib/hecatomb/snakemake/workflow/rules/assembly 2024-02-09T06:01:05,207 copying hecatomb/snakemake/workflow/rules/assembly/coverage.smk -> build/lib/hecatomb/snakemake/workflow/rules/assembly 2024-02-09T06:01:05,208 copying hecatomb/snakemake/workflow/rules/assembly/longreads.smk -> build/lib/hecatomb/snakemake/workflow/rules/assembly 2024-02-09T06:01:05,208 copying hecatomb/snakemake/workflow/rules/assembly/shortreads.smk -> build/lib/hecatomb/snakemake/workflow/rules/assembly 2024-02-09T06:01:05,209 creating build/lib/hecatomb/snakemake/workflow/rules/preflight 2024-02-09T06:01:05,209 copying hecatomb/snakemake/workflow/rules/preflight/directories.smk -> build/lib/hecatomb/snakemake/workflow/rules/preflight 2024-02-09T06:01:05,210 copying hecatomb/snakemake/workflow/rules/preflight/functions.smk -> build/lib/hecatomb/snakemake/workflow/rules/preflight 2024-02-09T06:01:05,210 copying hecatomb/snakemake/workflow/rules/preflight/targets.smk -> build/lib/hecatomb/snakemake/workflow/rules/preflight 2024-02-09T06:01:05,211 copying hecatomb/snakemake/workflow/rules/preflight/validate.smk -> build/lib/hecatomb/snakemake/workflow/rules/preflight 2024-02-09T06:01:05,217 creating build/lib/hecatomb/snakemake/workflow/rules/preprocessing 2024-02-09T06:01:05,220 copying hecatomb/snakemake/workflow/rules/preprocessing/preprocessing.smk -> build/lib/hecatomb/snakemake/workflow/rules/preprocessing 2024-02-09T06:01:05,222 creating build/lib/hecatomb/snakemake/workflow/rules/reports 2024-02-09T06:01:05,224 copying hecatomb/snakemake/workflow/rules/reports/summaries.smk -> build/lib/hecatomb/snakemake/workflow/rules/reports 2024-02-09T06:01:05,229 copying hecatomb/snakemake/workflow/rules/reports/summaries_optional.smk -> build/lib/hecatomb/snakemake/workflow/rules/reports 2024-02-09T06:01:05,242 creating build/lib/hecatomb/snakemake/workflow/scripts 2024-02-09T06:01:05,274 copying hecatomb/snakemake/workflow/scripts/__init__.py -> build/lib/hecatomb/snakemake/workflow/scripts 2024-02-09T06:01:05,275 copying hecatomb/snakemake/workflow/scripts/aaBigtable.py -> build/lib/hecatomb/snakemake/workflow/scripts 2024-02-09T06:01:05,275 copying hecatomb/snakemake/workflow/scripts/aaPrimaryParse.py -> build/lib/hecatomb/snakemake/workflow/scripts 2024-02-09T06:01:05,276 copying hecatomb/snakemake/workflow/scripts/aaSecondaryParse.py -> build/lib/hecatomb/snakemake/workflow/scripts 2024-02-09T06:01:05,277 copying hecatomb/snakemake/workflow/scripts/contigCountTable.py -> build/lib/hecatomb/snakemake/workflow/scripts 2024-02-09T06:01:05,278 copying hecatomb/snakemake/workflow/scripts/contigKronaText.py -> build/lib/hecatomb/snakemake/workflow/scripts 2024-02-09T06:01:05,279 copying hecatomb/snakemake/workflow/scripts/contigReadTaxon.py -> build/lib/hecatomb/snakemake/workflow/scripts 2024-02-09T06:01:05,279 copying hecatomb/snakemake/workflow/scripts/kronaText.py -> build/lib/hecatomb/snakemake/workflow/scripts 2024-02-09T06:01:05,280 copying hecatomb/snakemake/workflow/scripts/mergeSeqTable.py -> build/lib/hecatomb/snakemake/workflow/scripts 2024-02-09T06:01:05,280 copying hecatomb/snakemake/workflow/scripts/ntBigtable.py -> build/lib/hecatomb/snakemake/workflow/scripts 2024-02-09T06:01:05,280 copying hecatomb/snakemake/workflow/scripts/ntPrimaryParse.py -> build/lib/hecatomb/snakemake/workflow/scripts 2024-02-09T06:01:05,281 copying hecatomb/snakemake/workflow/scripts/ntSecondaryLca.py -> build/lib/hecatomb/snakemake/workflow/scripts 2024-02-09T06:01:05,281 copying hecatomb/snakemake/workflow/scripts/orfmFilt.py -> build/lib/hecatomb/snakemake/workflow/scripts 2024-02-09T06:01:05,282 copying hecatomb/snakemake/workflow/scripts/sankey.py -> build/lib/hecatomb/snakemake/workflow/scripts 2024-02-09T06:01:05,282 copying hecatomb/snakemake/workflow/scripts/seqPropertyTable.py -> build/lib/hecatomb/snakemake/workflow/scripts 2024-02-09T06:01:05,283 copying hecatomb/snakemake/workflow/scripts/taxLevelCounts.py -> build/lib/hecatomb/snakemake/workflow/scripts 2024-02-09T06:01:05,283 creating build/lib/hecatomb/test_data 2024-02-09T06:01:05,284 copying hecatomb/test_data/A13-04-182-06_TAGCTT_R1.fastq.gz -> build/lib/hecatomb/test_data 2024-02-09T06:01:05,284 copying hecatomb/test_data/A13-04-182-06_TAGCTT_R2.fastq.gz -> build/lib/hecatomb/test_data 2024-02-09T06:01:05,285 copying hecatomb/test_data/A13-12-250-06_GGCTAC_R1.fastq.gz -> build/lib/hecatomb/test_data 2024-02-09T06:01:05,286 copying hecatomb/test_data/A13-12-250-06_GGCTAC_R2.fastq.gz -> build/lib/hecatomb/test_data 2024-02-09T06:01:05,401 copying hecatomb/test_data/A13-135-177-06_AGTTCC_R1.fastq.gz -> build/lib/hecatomb/test_data 2024-02-09T06:01:05,488 copying hecatomb/test_data/A13-135-177-06_AGTTCC_R2.fastq.gz -> build/lib/hecatomb/test_data 2024-02-09T06:01:05,581 copying hecatomb/test_data/A13-151-169-06_ATGTCA_R1.fastq.gz -> build/lib/hecatomb/test_data 2024-02-09T06:01:05,650 copying hecatomb/test_data/A13-151-169-06_ATGTCA_R2.fastq.gz -> build/lib/hecatomb/test_data 2024-02-09T06:01:05,729 copying hecatomb/test_data/A13-252-114-06_CCGTCC_R1.fastq.gz -> build/lib/hecatomb/test_data 2024-02-09T06:01:05,801 copying hecatomb/test_data/A13-252-114-06_CCGTCC_R2.fastq.gz -> build/lib/hecatomb/test_data 2024-02-09T06:01:05,883 copying hecatomb/test_data/A13-253-140-06_GTCCGC_R1.fastq.gz -> build/lib/hecatomb/test_data 2024-02-09T06:01:05,947 copying hecatomb/test_data/A13-253-140-06_GTCCGC_R2.fastq.gz -> build/lib/hecatomb/test_data 2024-02-09T06:01:06,023 copying hecatomb/test_data/A13-255-183-06_GTGGCC_R1.fastq.gz -> build/lib/hecatomb/test_data 2024-02-09T06:01:06,090 copying hecatomb/test_data/A13-255-183-06_GTGGCC_R2.fastq.gz -> build/lib/hecatomb/test_data 2024-02-09T06:01:06,158 copying hecatomb/test_data/A13-256-115-06_GTTTCG_R1.fastq.gz -> build/lib/hecatomb/test_data 2024-02-09T06:01:06,229 copying hecatomb/test_data/A13-256-115-06_GTTTCG_R2.fastq.gz -> build/lib/hecatomb/test_data 2024-02-09T06:01:06,326 copying hecatomb/test_data/A13-256-117-06_ACTGAT_R1.fastq.gz -> build/lib/hecatomb/test_data 2024-02-09T06:01:06,495 copying hecatomb/test_data/A13-256-117-06_ACTGAT_R2.fastq.gz -> build/lib/hecatomb/test_data 2024-02-09T06:01:06,582 copying hecatomb/test_data/A13-258-124-06_CGTACG_R1.fastq.gz -> build/lib/hecatomb/test_data 2024-02-09T06:01:06,651 copying hecatomb/test_data/A13-258-124-06_CGTACG_R2.fastq.gz -> build/lib/hecatomb/test_data 2024-02-09T06:01:06,733 copying hecatomb/test_data/test_config.yaml -> build/lib/hecatomb/test_data 2024-02-09T06:01:06,735 file hecatomb.py (for module hecatomb) not found 2024-02-09T06:01:06,777 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-02-09T06:01:06,778 !! 2024-02-09T06:01:06,779 ******************************************************************************** 2024-02-09T06:01:06,779 Please avoid running ``setup.py`` directly. 2024-02-09T06:01:06,780 Instead, use pypa/build, pypa/installer or other 2024-02-09T06:01:06,780 standards-based tools. 2024-02-09T06:01:06,781 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-02-09T06:01:06,782 ******************************************************************************** 2024-02-09T06:01:06,783 !! 2024-02-09T06:01:06,784 self.initialize_options() 2024-02-09T06:01:06,826 installing to build/bdist.linux-armv7l/wheel 2024-02-09T06:01:06,827 running install 2024-02-09T06:01:06,861 running install_lib 2024-02-09T06:01:06,895 creating build/bdist.linux-armv7l 2024-02-09T06:01:06,896 creating build/bdist.linux-armv7l/wheel 2024-02-09T06:01:06,898 creating build/bdist.linux-armv7l/wheel/hecatomb 2024-02-09T06:01:06,899 creating build/bdist.linux-armv7l/wheel/hecatomb/snakemake 2024-02-09T06:01:06,901 creating build/bdist.linux-armv7l/wheel/hecatomb/snakemake/profile 2024-02-09T06:01:06,902 creating build/bdist.linux-armv7l/wheel/hecatomb/snakemake/profile/example_slurm 2024-02-09T06:01:06,903 copying build/lib/hecatomb/snakemake/profile/example_slurm/config.yaml -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/profile/example_slurm 2024-02-09T06:01:06,906 copying build/lib/hecatomb/snakemake/profile/example_slurm/slurm-status.py -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/profile/example_slurm 2024-02-09T06:01:06,908 creating build/bdist.linux-armv7l/wheel/hecatomb/snakemake/profile/default 2024-02-09T06:01:06,909 copying build/lib/hecatomb/snakemake/profile/default/config.yaml -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/profile/default 2024-02-09T06:01:06,911 creating build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow 2024-02-09T06:01:06,912 creating build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/envs 2024-02-09T06:01:06,913 copying build/lib/hecatomb/snakemake/workflow/envs/samtools.yaml -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/envs 2024-02-09T06:01:06,915 copying build/lib/hecatomb/snakemake/workflow/envs/megahit.yaml -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/envs 2024-02-09T06:01:06,917 copying build/lib/hecatomb/snakemake/workflow/envs/canu.yaml -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/envs 2024-02-09T06:01:06,919 copying build/lib/hecatomb/snakemake/workflow/envs/seqkit.yaml -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/envs 2024-02-09T06:01:06,921 copying build/lib/hecatomb/snakemake/workflow/envs/mmseqs2.yaml -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/envs 2024-02-09T06:01:06,922 copying build/lib/hecatomb/snakemake/workflow/envs/pysam.yaml -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/envs 2024-02-09T06:01:06,924 copying build/lib/hecatomb/snakemake/workflow/envs/krona.yaml -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/envs 2024-02-09T06:01:06,926 copying build/lib/hecatomb/snakemake/workflow/envs/pigz.yaml -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/envs 2024-02-09T06:01:06,928 copying build/lib/hecatomb/snakemake/workflow/envs/minimap2.yaml -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/envs 2024-02-09T06:01:06,930 copying build/lib/hecatomb/snakemake/workflow/envs/curl.yaml -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/envs 2024-02-09T06:01:06,931 copying build/lib/hecatomb/snakemake/workflow/envs/bedtools.yaml -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/envs 2024-02-09T06:01:06,933 copying build/lib/hecatomb/snakemake/workflow/envs/koverage.yaml -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/envs 2024-02-09T06:01:06,935 copying build/lib/hecatomb/snakemake/workflow/envs/bbmap.yaml -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/envs 2024-02-09T06:01:06,937 copying build/lib/hecatomb/snakemake/workflow/envs/metaflye.yaml -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/envs 2024-02-09T06:01:06,938 copying build/lib/hecatomb/snakemake/workflow/envs/trimnami.yaml -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/envs 2024-02-09T06:01:06,940 copying build/lib/hecatomb/snakemake/workflow/AddHost.smk -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow 2024-02-09T06:01:06,942 creating build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/report 2024-02-09T06:01:06,943 copying build/lib/hecatomb/snakemake/workflow/report/nucleotide_annotations.rst -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/report 2024-02-09T06:01:06,945 copying build/lib/hecatomb/snakemake/workflow/report/protein_annotations.rst -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/report 2024-02-09T06:01:06,947 copying build/lib/hecatomb/snakemake/workflow/report/step13.rst -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/report 2024-02-09T06:01:06,949 copying build/lib/hecatomb/snakemake/workflow/report/summary_table.rst -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/report 2024-02-09T06:01:06,950 copying build/lib/hecatomb/snakemake/workflow/report/unclassified_seqtable.rst -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/report 2024-02-09T06:01:06,952 copying build/lib/hecatomb/snakemake/workflow/report/step10.rst -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/report 2024-02-09T06:01:06,954 copying build/lib/hecatomb/snakemake/workflow/report/tax_level_counts.rst -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/report 2024-02-09T06:01:06,956 copying build/lib/hecatomb/snakemake/workflow/report/step11.rst -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/report 2024-02-09T06:01:06,958 copying build/lib/hecatomb/snakemake/workflow/report/step08.rst -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/report 2024-02-09T06:01:06,959 copying build/lib/hecatomb/snakemake/workflow/report/step12.rst -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/report 2024-02-09T06:01:06,961 copying build/lib/hecatomb/snakemake/workflow/report/raw_read_counts.rst -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/report 2024-02-09T06:01:06,963 copying build/lib/hecatomb/snakemake/workflow/report/step07.rst -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/report 2024-02-09T06:01:06,965 copying build/lib/hecatomb/snakemake/workflow/report/host_removed_counts.rst -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/report 2024-02-09T06:01:06,967 copying build/lib/hecatomb/snakemake/workflow/report/sankey.rst -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/report 2024-02-09T06:01:06,969 copying build/lib/hecatomb/snakemake/workflow/report/mapped_counts.rst -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/report 2024-02-09T06:01:06,970 copying build/lib/hecatomb/snakemake/workflow/report/step09.rst -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/report 2024-02-09T06:01:06,973 creating build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/scripts 2024-02-09T06:01:06,974 copying build/lib/hecatomb/snakemake/workflow/scripts/ntBigtable.py -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/scripts 2024-02-09T06:01:06,976 copying build/lib/hecatomb/snakemake/workflow/scripts/contigCountTable.py -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/scripts 2024-02-09T06:01:06,978 copying build/lib/hecatomb/snakemake/workflow/scripts/seqPropertyTable.py -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/scripts 2024-02-09T06:01:06,980 copying build/lib/hecatomb/snakemake/workflow/scripts/mergeSeqTable.py -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/scripts 2024-02-09T06:01:06,982 copying build/lib/hecatomb/snakemake/workflow/scripts/aaPrimaryParse.py -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/scripts 2024-02-09T06:01:06,983 copying build/lib/hecatomb/snakemake/workflow/scripts/kronaText.py -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/scripts 2024-02-09T06:01:06,985 copying build/lib/hecatomb/snakemake/workflow/scripts/orfmFilt.py -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/scripts 2024-02-09T06:01:06,987 copying build/lib/hecatomb/snakemake/workflow/scripts/ntSecondaryLca.py -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/scripts 2024-02-09T06:01:06,989 copying build/lib/hecatomb/snakemake/workflow/scripts/contigReadTaxon.py -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/scripts 2024-02-09T06:01:06,991 copying build/lib/hecatomb/snakemake/workflow/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/scripts 2024-02-09T06:01:06,992 copying build/lib/hecatomb/snakemake/workflow/scripts/ntPrimaryParse.py -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/scripts 2024-02-09T06:01:06,994 copying build/lib/hecatomb/snakemake/workflow/scripts/aaBigtable.py -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/scripts 2024-02-09T06:01:06,996 copying build/lib/hecatomb/snakemake/workflow/scripts/aaSecondaryParse.py -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/scripts 2024-02-09T06:01:06,998 copying build/lib/hecatomb/snakemake/workflow/scripts/sankey.py -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/scripts 2024-02-09T06:01:07,000 copying build/lib/hecatomb/snakemake/workflow/scripts/contigKronaText.py -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/scripts 2024-02-09T06:01:07,002 copying build/lib/hecatomb/snakemake/workflow/scripts/taxLevelCounts.py -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/scripts 2024-02-09T06:01:07,004 copying build/lib/hecatomb/snakemake/workflow/DownloadDB.smk -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow 2024-02-09T06:01:07,006 copying build/lib/hecatomb/snakemake/workflow/combineOutputs.smk -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow 2024-02-09T06:01:07,008 creating build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/rules 2024-02-09T06:01:07,010 creating build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/rules/assembly 2024-02-09T06:01:07,011 copying build/lib/hecatomb/snakemake/workflow/rules/assembly/coverage.smk -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/rules/assembly 2024-02-09T06:01:07,013 copying build/lib/hecatomb/snakemake/workflow/rules/assembly/shortreads.smk -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/rules/assembly 2024-02-09T06:01:07,015 copying build/lib/hecatomb/snakemake/workflow/rules/assembly/longreads.smk -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/rules/assembly 2024-02-09T06:01:07,017 creating build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/rules/annotation 2024-02-09T06:01:07,018 copying build/lib/hecatomb/snakemake/workflow/rules/annotation/contig_mapping.smk -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/rules/annotation 2024-02-09T06:01:07,020 copying build/lib/hecatomb/snakemake/workflow/rules/annotation/contig_annotation.smk -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/rules/annotation 2024-02-09T06:01:07,022 copying build/lib/hecatomb/snakemake/workflow/rules/annotation/read_annotation.smk -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/rules/annotation 2024-02-09T06:01:07,025 creating build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/rules/preprocessing 2024-02-09T06:01:07,026 copying build/lib/hecatomb/snakemake/workflow/rules/preprocessing/preprocessing.smk -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/rules/preprocessing 2024-02-09T06:01:07,029 creating build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/rules/preflight 2024-02-09T06:01:07,030 copying build/lib/hecatomb/snakemake/workflow/rules/preflight/directories.smk -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/rules/preflight 2024-02-09T06:01:07,032 copying build/lib/hecatomb/snakemake/workflow/rules/preflight/validate.smk -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/rules/preflight 2024-02-09T06:01:07,034 copying build/lib/hecatomb/snakemake/workflow/rules/preflight/targets.smk -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/rules/preflight 2024-02-09T06:01:07,036 copying build/lib/hecatomb/snakemake/workflow/rules/preflight/functions.smk -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/rules/preflight 2024-02-09T06:01:07,039 creating build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/rules/reports 2024-02-09T06:01:07,040 copying build/lib/hecatomb/snakemake/workflow/rules/reports/summaries.smk -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/rules/reports 2024-02-09T06:01:07,042 copying build/lib/hecatomb/snakemake/workflow/rules/reports/summaries_optional.smk -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow/rules/reports 2024-02-09T06:01:07,044 copying build/lib/hecatomb/snakemake/workflow/Hecatomb.smk -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/workflow 2024-02-09T06:01:07,046 creating build/bdist.linux-armv7l/wheel/hecatomb/snakemake/config 2024-02-09T06:01:07,047 copying build/lib/hecatomb/snakemake/config/immutable.yaml -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/config 2024-02-09T06:01:07,049 copying build/lib/hecatomb/snakemake/config/config.yaml -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/config 2024-02-09T06:01:07,051 copying build/lib/hecatomb/snakemake/config/dbFiles.yaml -> build/bdist.linux-armv7l/wheel/hecatomb/snakemake/config 2024-02-09T06:01:07,053 copying build/lib/hecatomb/__main__.py -> build/bdist.linux-armv7l/wheel/hecatomb 2024-02-09T06:01:07,055 copying build/lib/hecatomb/hecatomb.CITATION -> build/bdist.linux-armv7l/wheel/hecatomb 2024-02-09T06:01:07,057 copying build/lib/hecatomb/hecatomb.LICENSE -> build/bdist.linux-armv7l/wheel/hecatomb 2024-02-09T06:01:07,059 creating build/bdist.linux-armv7l/wheel/hecatomb/test_data 2024-02-09T06:01:07,060 copying build/lib/hecatomb/test_data/A13-135-177-06_AGTTCC_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/hecatomb/test_data 2024-02-09T06:01:07,131 copying build/lib/hecatomb/test_data/A13-253-140-06_GTCCGC_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/hecatomb/test_data 2024-02-09T06:01:07,206 copying build/lib/hecatomb/test_data/A13-255-183-06_GTGGCC_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/hecatomb/test_data 2024-02-09T06:01:07,269 copying build/lib/hecatomb/test_data/A13-252-114-06_CCGTCC_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/hecatomb/test_data 2024-02-09T06:01:07,360 copying build/lib/hecatomb/test_data/A13-256-115-06_GTTTCG_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/hecatomb/test_data 2024-02-09T06:01:07,448 copying build/lib/hecatomb/test_data/A13-258-124-06_CGTACG_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/hecatomb/test_data 2024-02-09T06:01:07,515 copying build/lib/hecatomb/test_data/A13-04-182-06_TAGCTT_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/hecatomb/test_data 2024-02-09T06:01:07,621 copying build/lib/hecatomb/test_data/A13-12-250-06_GGCTAC_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/hecatomb/test_data 2024-02-09T06:01:07,715 copying build/lib/hecatomb/test_data/A13-151-169-06_ATGTCA_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/hecatomb/test_data 2024-02-09T06:01:07,793 copying build/lib/hecatomb/test_data/A13-12-250-06_GGCTAC_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/hecatomb/test_data 2024-02-09T06:01:07,866 copying build/lib/hecatomb/test_data/test_config.yaml -> build/bdist.linux-armv7l/wheel/hecatomb/test_data 2024-02-09T06:01:07,868 copying build/lib/hecatomb/test_data/A13-255-183-06_GTGGCC_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/hecatomb/test_data 2024-02-09T06:01:07,938 copying build/lib/hecatomb/test_data/A13-04-182-06_TAGCTT_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/hecatomb/test_data 2024-02-09T06:01:08,007 copying build/lib/hecatomb/test_data/A13-253-140-06_GTCCGC_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/hecatomb/test_data 2024-02-09T06:01:08,070 copying build/lib/hecatomb/test_data/A13-135-177-06_AGTTCC_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/hecatomb/test_data 2024-02-09T06:01:08,147 copying build/lib/hecatomb/test_data/A13-258-124-06_CGTACG_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/hecatomb/test_data 2024-02-09T06:01:08,231 copying build/lib/hecatomb/test_data/A13-252-114-06_CCGTCC_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/hecatomb/test_data 2024-02-09T06:01:08,304 copying build/lib/hecatomb/test_data/A13-256-117-06_ACTGAT_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/hecatomb/test_data 2024-02-09T06:01:08,381 copying build/lib/hecatomb/test_data/A13-256-117-06_ACTGAT_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/hecatomb/test_data 2024-02-09T06:01:08,463 copying build/lib/hecatomb/test_data/A13-151-169-06_ATGTCA_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/hecatomb/test_data 2024-02-09T06:01:08,537 copying build/lib/hecatomb/test_data/A13-256-115-06_GTTTCG_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/hecatomb/test_data 2024-02-09T06:01:08,613 copying build/lib/hecatomb/__init__.py -> build/bdist.linux-armv7l/wheel/hecatomb 2024-02-09T06:01:08,615 copying build/lib/hecatomb/hecatomb.VERSION -> build/bdist.linux-armv7l/wheel/hecatomb 2024-02-09T06:01:08,616 running install_data 2024-02-09T06:01:08,654 creating build/bdist.linux-armv7l/wheel/hecatomb-1.3.2.data 2024-02-09T06:01:08,654 creating build/bdist.linux-armv7l/wheel/hecatomb-1.3.2.data/data 2024-02-09T06:01:08,656 copying README.md -> build/bdist.linux-armv7l/wheel/hecatomb-1.3.2.data/data/. 2024-02-09T06:01:08,657 running install_egg_info 2024-02-09T06:01:08,697 Copying hecatomb.egg-info to build/bdist.linux-armv7l/wheel/hecatomb-1.3.2-py3.11.egg-info 2024-02-09T06:01:08,709 running install_scripts 2024-02-09T06:01:08,725 creating build/bdist.linux-armv7l/wheel/hecatomb-1.3.2.dist-info/WHEEL 2024-02-09T06:01:08,728 creating '/tmp/pip-wheel-4gsjc77j/hecatomb-1.3.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-02-09T06:01:08,730 adding 'hecatomb/__init__.py' 2024-02-09T06:01:08,732 adding 'hecatomb/__main__.py' 2024-02-09T06:01:08,733 adding 'hecatomb/hecatomb.CITATION' 2024-02-09T06:01:08,734 adding 'hecatomb/hecatomb.LICENSE' 2024-02-09T06:01:08,735 adding 'hecatomb/hecatomb.VERSION' 2024-02-09T06:01:08,738 adding 'hecatomb/snakemake/config/config.yaml' 2024-02-09T06:01:08,739 adding 'hecatomb/snakemake/config/dbFiles.yaml' 2024-02-09T06:01:08,740 adding 'hecatomb/snakemake/config/immutable.yaml' 2024-02-09T06:01:08,742 adding 'hecatomb/snakemake/profile/default/config.yaml' 2024-02-09T06:01:08,744 adding 'hecatomb/snakemake/profile/example_slurm/config.yaml' 2024-02-09T06:01:08,745 adding 'hecatomb/snakemake/profile/example_slurm/slurm-status.py' 2024-02-09T06:01:08,747 adding 'hecatomb/snakemake/workflow/AddHost.smk' 2024-02-09T06:01:08,749 adding 'hecatomb/snakemake/workflow/DownloadDB.smk' 2024-02-09T06:01:08,750 adding 'hecatomb/snakemake/workflow/Hecatomb.smk' 2024-02-09T06:01:08,751 adding 'hecatomb/snakemake/workflow/combineOutputs.smk' 2024-02-09T06:01:08,753 adding 'hecatomb/snakemake/workflow/envs/bbmap.yaml' 2024-02-09T06:01:08,755 adding 'hecatomb/snakemake/workflow/envs/bedtools.yaml' 2024-02-09T06:01:08,756 adding 'hecatomb/snakemake/workflow/envs/canu.yaml' 2024-02-09T06:01:08,757 adding 'hecatomb/snakemake/workflow/envs/curl.yaml' 2024-02-09T06:01:08,758 adding 'hecatomb/snakemake/workflow/envs/koverage.yaml' 2024-02-09T06:01:08,759 adding 'hecatomb/snakemake/workflow/envs/krona.yaml' 2024-02-09T06:01:08,760 adding 'hecatomb/snakemake/workflow/envs/megahit.yaml' 2024-02-09T06:01:08,761 adding 'hecatomb/snakemake/workflow/envs/metaflye.yaml' 2024-02-09T06:01:08,762 adding 'hecatomb/snakemake/workflow/envs/minimap2.yaml' 2024-02-09T06:01:08,764 adding 'hecatomb/snakemake/workflow/envs/mmseqs2.yaml' 2024-02-09T06:01:08,765 adding 'hecatomb/snakemake/workflow/envs/pigz.yaml' 2024-02-09T06:01:08,766 adding 'hecatomb/snakemake/workflow/envs/pysam.yaml' 2024-02-09T06:01:08,767 adding 'hecatomb/snakemake/workflow/envs/samtools.yaml' 2024-02-09T06:01:08,768 adding 'hecatomb/snakemake/workflow/envs/seqkit.yaml' 2024-02-09T06:01:08,769 adding 'hecatomb/snakemake/workflow/envs/trimnami.yaml' 2024-02-09T06:01:08,770 adding 'hecatomb/snakemake/workflow/report/host_removed_counts.rst' 2024-02-09T06:01:08,771 adding 'hecatomb/snakemake/workflow/report/mapped_counts.rst' 2024-02-09T06:01:08,773 adding 'hecatomb/snakemake/workflow/report/nucleotide_annotations.rst' 2024-02-09T06:01:08,774 adding 'hecatomb/snakemake/workflow/report/protein_annotations.rst' 2024-02-09T06:01:08,775 adding 'hecatomb/snakemake/workflow/report/raw_read_counts.rst' 2024-02-09T06:01:08,776 adding 'hecatomb/snakemake/workflow/report/sankey.rst' 2024-02-09T06:01:08,777 adding 'hecatomb/snakemake/workflow/report/step07.rst' 2024-02-09T06:01:08,778 adding 'hecatomb/snakemake/workflow/report/step08.rst' 2024-02-09T06:01:08,779 adding 'hecatomb/snakemake/workflow/report/step09.rst' 2024-02-09T06:01:08,780 adding 'hecatomb/snakemake/workflow/report/step10.rst' 2024-02-09T06:01:08,781 adding 'hecatomb/snakemake/workflow/report/step11.rst' 2024-02-09T06:01:08,782 adding 'hecatomb/snakemake/workflow/report/step12.rst' 2024-02-09T06:01:08,783 adding 'hecatomb/snakemake/workflow/report/step13.rst' 2024-02-09T06:01:08,785 adding 'hecatomb/snakemake/workflow/report/summary_table.rst' 2024-02-09T06:01:08,786 adding 'hecatomb/snakemake/workflow/report/tax_level_counts.rst' 2024-02-09T06:01:08,787 adding 'hecatomb/snakemake/workflow/report/unclassified_seqtable.rst' 2024-02-09T06:01:08,789 adding 'hecatomb/snakemake/workflow/rules/annotation/contig_annotation.smk' 2024-02-09T06:01:08,791 adding 'hecatomb/snakemake/workflow/rules/annotation/contig_mapping.smk' 2024-02-09T06:01:08,792 adding 'hecatomb/snakemake/workflow/rules/annotation/read_annotation.smk' 2024-02-09T06:01:08,794 adding 'hecatomb/snakemake/workflow/rules/assembly/coverage.smk' 2024-02-09T06:01:08,796 adding 'hecatomb/snakemake/workflow/rules/assembly/longreads.smk' 2024-02-09T06:01:08,797 adding 'hecatomb/snakemake/workflow/rules/assembly/shortreads.smk' 2024-02-09T06:01:08,799 adding 'hecatomb/snakemake/workflow/rules/preflight/directories.smk' 2024-02-09T06:01:08,801 adding 'hecatomb/snakemake/workflow/rules/preflight/functions.smk' 2024-02-09T06:01:08,802 adding 'hecatomb/snakemake/workflow/rules/preflight/targets.smk' 2024-02-09T06:01:08,803 adding 'hecatomb/snakemake/workflow/rules/preflight/validate.smk' 2024-02-09T06:01:08,805 adding 'hecatomb/snakemake/workflow/rules/preprocessing/preprocessing.smk' 2024-02-09T06:01:08,807 adding 'hecatomb/snakemake/workflow/rules/reports/summaries.smk' 2024-02-09T06:01:08,809 adding 'hecatomb/snakemake/workflow/rules/reports/summaries_optional.smk' 2024-02-09T06:01:08,810 adding 'hecatomb/snakemake/workflow/scripts/__init__.py' 2024-02-09T06:01:08,812 adding 'hecatomb/snakemake/workflow/scripts/aaBigtable.py' 2024-02-09T06:01:08,813 adding 'hecatomb/snakemake/workflow/scripts/aaPrimaryParse.py' 2024-02-09T06:01:08,814 adding 'hecatomb/snakemake/workflow/scripts/aaSecondaryParse.py' 2024-02-09T06:01:08,815 adding 'hecatomb/snakemake/workflow/scripts/contigCountTable.py' 2024-02-09T06:01:08,817 adding 'hecatomb/snakemake/workflow/scripts/contigKronaText.py' 2024-02-09T06:01:08,818 adding 'hecatomb/snakemake/workflow/scripts/contigReadTaxon.py' 2024-02-09T06:01:08,819 adding 'hecatomb/snakemake/workflow/scripts/kronaText.py' 2024-02-09T06:01:08,820 adding 'hecatomb/snakemake/workflow/scripts/mergeSeqTable.py' 2024-02-09T06:01:08,822 adding 'hecatomb/snakemake/workflow/scripts/ntBigtable.py' 2024-02-09T06:01:08,823 adding 'hecatomb/snakemake/workflow/scripts/ntPrimaryParse.py' 2024-02-09T06:01:08,824 adding 'hecatomb/snakemake/workflow/scripts/ntSecondaryLca.py' 2024-02-09T06:01:08,825 adding 'hecatomb/snakemake/workflow/scripts/orfmFilt.py' 2024-02-09T06:01:08,826 adding 'hecatomb/snakemake/workflow/scripts/sankey.py' 2024-02-09T06:01:08,827 adding 'hecatomb/snakemake/workflow/scripts/seqPropertyTable.py' 2024-02-09T06:01:08,829 adding 'hecatomb/snakemake/workflow/scripts/taxLevelCounts.py' 2024-02-09T06:01:09,336 adding 'hecatomb/test_data/A13-04-182-06_TAGCTT_R1.fastq.gz' 2024-02-09T06:01:09,907 adding 'hecatomb/test_data/A13-04-182-06_TAGCTT_R2.fastq.gz' 2024-02-09T06:01:10,480 adding 'hecatomb/test_data/A13-12-250-06_GGCTAC_R1.fastq.gz' 2024-02-09T06:01:11,055 adding 'hecatomb/test_data/A13-12-250-06_GGCTAC_R2.fastq.gz' 2024-02-09T06:01:11,580 adding 'hecatomb/test_data/A13-135-177-06_AGTTCC_R1.fastq.gz' 2024-02-09T06:01:12,146 adding 'hecatomb/test_data/A13-135-177-06_AGTTCC_R2.fastq.gz' 2024-02-09T06:01:12,682 adding 'hecatomb/test_data/A13-151-169-06_ATGTCA_R1.fastq.gz' 2024-02-09T06:01:13,266 adding 'hecatomb/test_data/A13-151-169-06_ATGTCA_R2.fastq.gz' 2024-02-09T06:01:13,816 adding 'hecatomb/test_data/A13-252-114-06_CCGTCC_R1.fastq.gz' 2024-02-09T06:01:14,425 adding 'hecatomb/test_data/A13-252-114-06_CCGTCC_R2.fastq.gz' 2024-02-09T06:01:14,938 adding 'hecatomb/test_data/A13-253-140-06_GTCCGC_R1.fastq.gz' 2024-02-09T06:01:15,545 adding 'hecatomb/test_data/A13-253-140-06_GTCCGC_R2.fastq.gz' 2024-02-09T06:01:16,111 adding 'hecatomb/test_data/A13-255-183-06_GTGGCC_R1.fastq.gz' 2024-02-09T06:01:16,648 adding 'hecatomb/test_data/A13-255-183-06_GTGGCC_R2.fastq.gz' 2024-02-09T06:01:17,248 adding 'hecatomb/test_data/A13-256-115-06_GTTTCG_R1.fastq.gz' 2024-02-09T06:01:17,857 adding 'hecatomb/test_data/A13-256-115-06_GTTTCG_R2.fastq.gz' 2024-02-09T06:01:18,413 adding 'hecatomb/test_data/A13-256-117-06_ACTGAT_R1.fastq.gz' 2024-02-09T06:01:18,992 adding 'hecatomb/test_data/A13-256-117-06_ACTGAT_R2.fastq.gz' 2024-02-09T06:01:19,511 adding 'hecatomb/test_data/A13-258-124-06_CGTACG_R1.fastq.gz' 2024-02-09T06:01:20,108 adding 'hecatomb/test_data/A13-258-124-06_CGTACG_R2.fastq.gz' 2024-02-09T06:01:20,144 adding 'hecatomb/test_data/test_config.yaml' 2024-02-09T06:01:20,148 adding 'hecatomb-1.3.2.data/data/README.md' 2024-02-09T06:01:20,152 adding 'hecatomb-1.3.2.dist-info/LICENSE' 2024-02-09T06:01:20,154 adding 'hecatomb-1.3.2.dist-info/METADATA' 2024-02-09T06:01:20,156 adding 'hecatomb-1.3.2.dist-info/WHEEL' 2024-02-09T06:01:20,157 adding 'hecatomb-1.3.2.dist-info/entry_points.txt' 2024-02-09T06:01:20,158 adding 'hecatomb-1.3.2.dist-info/top_level.txt' 2024-02-09T06:01:20,161 adding 'hecatomb-1.3.2.dist-info/RECORD' 2024-02-09T06:01:20,820 removing build/bdist.linux-armv7l/wheel 2024-02-09T06:01:21,000 Building wheel for hecatomb (setup.py): finished with status 'done' 2024-02-09T06:01:23,074 Created wheel for hecatomb: filename=hecatomb-1.3.2-py3-none-any.whl size=98565588 sha256=bc8e95a886557900889d280f10358e2b14f97e09cbd7498af6217e9a03cc3dd6 2024-02-09T06:01:23,076 Stored in directory: /tmp/pip-ephem-wheel-cache-ggcon6w9/wheels/24/5c/05/6835e46a638d9619e2e582d7d14e50bf166ab745245e0b544b 2024-02-09T06:01:23,121 Successfully built hecatomb 2024-02-09T06:01:25,671 Removed build tracker: '/tmp/pip-build-tracker-utpfky05'