2024-02-12T20:17:22,673 Created temporary directory: /tmp/pip-build-tracker-1mijl4o5 2024-02-12T20:17:22,674 Initialized build tracking at /tmp/pip-build-tracker-1mijl4o5 2024-02-12T20:17:22,675 Created build tracker: /tmp/pip-build-tracker-1mijl4o5 2024-02-12T20:17:22,675 Entered build tracker: /tmp/pip-build-tracker-1mijl4o5 2024-02-12T20:17:22,676 Created temporary directory: /tmp/pip-wheel-cgao1668 2024-02-12T20:17:22,680 Created temporary directory: /tmp/pip-ephem-wheel-cache-yf11lvs5 2024-02-12T20:17:22,702 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-02-12T20:17:22,705 2 location(s) to search for versions of galaxy-app: 2024-02-12T20:17:22,705 * https://pypi.org/simple/galaxy-app/ 2024-02-12T20:17:22,705 * https://www.piwheels.org/simple/galaxy-app/ 2024-02-12T20:17:22,706 Fetching project page and analyzing links: https://pypi.org/simple/galaxy-app/ 2024-02-12T20:17:22,707 Getting page https://pypi.org/simple/galaxy-app/ 2024-02-12T20:17:22,708 Found index url https://pypi.org/simple/ 2024-02-12T20:17:22,927 Fetched page https://pypi.org/simple/galaxy-app/ as application/vnd.pypi.simple.v1+json 2024-02-12T20:17:22,933 Found link https://files.pythonhosted.org/packages/cd/3d/994b7f4faaee2a95a31af125e96734f3daa9f39e6decd0f7a09950ef686c/galaxy-app-20.5.0.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 20.5.0 2024-02-12T20:17:22,934 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/0e/45/8db530ec699e0de1e6307285126e8bba3dca8ffe575e9994b0c56aa01e35/galaxy_app-20.5.0-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) 2024-02-12T20:17:22,934 Found link https://files.pythonhosted.org/packages/39/7b/ed47204e833f922db4fc7e96d8de33650a57856999b95145a9e5414270b1/galaxy-app-20.9.0.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 20.9.0 2024-02-12T20:17:22,935 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/74/6e/cd07342b2790bc4ec0f3d03eb559fdee76513d00657c2897ad5517615704/galaxy_app-20.9.0-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) 2024-02-12T20:17:22,935 Found link https://files.pythonhosted.org/packages/bb/d4/bbe8b30220b07000291c571508565a6b2c803c8b3580f4edb50dec7dfb25/galaxy-app-21.9.0.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 21.9.0 2024-02-12T20:17:22,936 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/2a/c8/f3c20efbe004b6968ac2f89cfc60e77d96b0a45844d864f7d4f84e985b6e/galaxy_app-21.9.0-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) 2024-02-12T20:17:22,937 Found link https://files.pythonhosted.org/packages/ac/8b/73350a0f611102667eabde41fa8bcd6ffb49ed5a726f6077366504f8bb42/galaxy-app-22.1.1.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 22.1.1 2024-02-12T20:17:22,937 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/e4/40/ca62a2cd45b022310bd0d4ce05f5ed3d59e8f994d19e31c3fc0410da4b45/galaxy_app-22.1.1-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) 2024-02-12T20:17:22,939 Found link https://files.pythonhosted.org/packages/89/47/4d9cc66c90213feb9f0a8e10fcea2ab93f66d90f289f5e0d72ef6dafcab9/galaxy-app-23.0.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.1 2024-02-12T20:17:22,939 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/d6/1d/9c9721f6bdcb3de36c2f9946af6639696d33f43a3934d9edd95f00d349e5/galaxy_app-23.0.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-02-12T20:17:22,940 Found link https://files.pythonhosted.org/packages/fc/5e/993fc4df93a146b8e11719fd70d92dddf4b5a2e14c2a5006ad5c7320857e/galaxy-app-23.0.2.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.2 2024-02-12T20:17:22,941 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/7c/cf/3e8752a5c5858f6a096a04d57f31653c5fdbdcb0740ec4f00d29db037a65/galaxy_app-23.0.2-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-02-12T20:17:22,942 Found link https://files.pythonhosted.org/packages/86/9a/1c845471521630df79226096bed68473fe2e355985ac4c2830ee0f2d6420/galaxy-app-23.0.3.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.3 2024-02-12T20:17:22,943 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/08/19/3c5252502bf8984448c6713825aea0efb9ba4de747eb073568b2679afc94/galaxy_app-23.0.3-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-02-12T20:17:22,944 Found link https://files.pythonhosted.org/packages/7b/69/05dfb348db46268dfd2096cea8f42d37bb0d5f6e55202f684607fc4fa1e2/galaxy-app-23.0.4.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.4 2024-02-12T20:17:22,944 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/12/d3/cd3e8e4b280236df34705ac5745d6cb657593b9b6064e6980df863dbfba0/galaxy_app-23.0.4-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-02-12T20:17:22,945 Found link https://files.pythonhosted.org/packages/9f/d5/eca55f6fa4a9147f5b72dd6a593a0c36280f2bc3a5bf95d95cb4112f92a8/galaxy-app-23.0.5.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.5 2024-02-12T20:17:22,946 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/d4/26/d168ceb65d4c9d6ef67c88f061d8eb88d7e845a2f10f10b7d1270d5acb37/galaxy_app-23.0.5-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-02-12T20:17:22,946 Found link https://files.pythonhosted.org/packages/86/9e/41165df0dabc7ff036d7a2daa00fe555770e7dbfb1e208f2847d756be48c/galaxy-app-23.0.6.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.6 2024-02-12T20:17:22,947 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/e8/73/abf8595c6097c3b6ffbe95cd4cdbf404a5cf6ad7b292545cc4d1cb87d4a0/galaxy_app-23.0.6-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-02-12T20:17:22,948 Found link https://files.pythonhosted.org/packages/41/07/083718b816053a9f97e5e678ac9bed14b31d3a224026170e58be13f37fba/galaxy-app-23.1.dev0.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.dev0 2024-02-12T20:17:22,949 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/7a/89/50a4575db66b638bee6f241f902f556eaa27855d7f0fd3323551bdb09f5d/galaxy_app-23.1.dev0-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-02-12T20:17:22,950 Found link https://files.pythonhosted.org/packages/96/67/be959ad3f838e23eec1821ba494202846a79ed3add7f603feab6a46e21f3/galaxy-app-23.1.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.1 2024-02-12T20:17:22,950 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/c8/f7/a84fe8d48fb96f5e96981ca3f60491f856efa4f2463722fa75ad8dcec7a7/galaxy_app-23.1.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-02-12T20:17:22,951 Found link https://files.pythonhosted.org/packages/ad/a6/798ae0b3aa469f382a3b4350fc394ebe60559177717140e48f97ae81d4a3/galaxy-app-23.1.2.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.2 2024-02-12T20:17:22,952 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/54/ef/8264cbce6eca0cd434001d62c838cd4798aa478a6af7879b83299c28193d/galaxy_app-23.1.2-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-02-12T20:17:22,953 Found link https://files.pythonhosted.org/packages/26/ba/0995031cda92688ec41ab4ad0cc11b148fd5caecf21e414928464bea82f8/galaxy-app-23.1.3.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.3 2024-02-12T20:17:22,953 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/03/0f/747509841f1baad002247bb2956344ce1ebb9703ab941c149f5456b32c31/galaxy_app-23.1.3-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-02-12T20:17:22,955 Found link https://files.pythonhosted.org/packages/de/63/8be8d20cf1c913da72f9b69af53b711dccc0a998718c2abf93349bdf5301/galaxy-app-23.1.4.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.4 2024-02-12T20:17:22,955 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/60/97/43d48dc8d2d332faab8a4439b68c7cbbd528f7b9d48c8a0092d60cc5124d/galaxy_app-23.1.4-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-02-12T20:17:22,956 Fetching project page and analyzing links: https://www.piwheels.org/simple/galaxy-app/ 2024-02-12T20:17:22,956 Getting page https://www.piwheels.org/simple/galaxy-app/ 2024-02-12T20:17:22,957 Found index url https://www.piwheels.org/simple/ 2024-02-12T20:17:23,123 Fetched page https://www.piwheels.org/simple/galaxy-app/ as text/html 2024-02-12T20:17:23,128 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.1.4-py3-none-any.whl#sha256=a0d156aebf5163d1c632ec4c512d86f60cd8848ff63bfdee5e72f0b2b1ea9942 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-02-12T20:17:23,128 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.1.3-py3-none-any.whl#sha256=31efbe6b15793cf934e6d3fa0acf8fa040a1110373f2af602c1384f2fddc61a5 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-02-12T20:17:23,129 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.1.2-py3-none-any.whl#sha256=af60799c6e1c91da02a7b4d1dc70fa1285c49cbb474f15dad9f74fc50ef0d214 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-02-12T20:17:23,129 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.1.1-py3-none-any.whl#sha256=c2a889aa873a367630a84277ea40ae425c8ccfb9d29770e60ed120e11f16287b (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-02-12T20:17:23,130 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.6-py3-none-any.whl#sha256=2c529481de193d71a8c059551d9713d602fa4e7817856a393fc657711fd26a80 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-02-12T20:17:23,130 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.5-py3-none-any.whl#sha256=1e9b1a29eee6bf66924f5da034af625e193ea4f7fe6585b2fee5379f94add213 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-02-12T20:17:23,131 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.4-py3-none-any.whl#sha256=0645d80a13b5594f7067c91e672962bdc25e46a38081f18d11d0aeaa34f8ee3d (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-02-12T20:17:23,132 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.3-py3-none-any.whl#sha256=a65f158d80ecabd0d612e24816a2e517007a19648a67381bdee48058c8236014 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-02-12T20:17:23,132 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.2-py3-none-any.whl#sha256=09f32912adb5c90cdbbcc5e2f3168a54501cb7595d207b2e660e4235e7e46067 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-02-12T20:17:23,133 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.1-py3-none-any.whl#sha256=e16745e48d15e5e5cb83991066b1e2dcb2333d49dac992e2601b9fc6af8f45a4 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-02-12T20:17:23,133 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-20.9.0-py2.py3-none-any.whl#sha256=d6b3897be5b3c63e0c7f914f9ce7df087cb3df8fa6d55b1475c7d933cdb09a29 (from https://www.piwheels.org/simple/galaxy-app/) 2024-02-12T20:17:23,134 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-20.5.0-py2.py3-none-any.whl#sha256=2aa533c8296a5843fd06ce934c7c817845b12286e6b62fb94bb685f0259d9ad0 (from https://www.piwheels.org/simple/galaxy-app/) 2024-02-12T20:17:23,135 Skipping link: not a file: https://www.piwheels.org/simple/galaxy-app/ 2024-02-12T20:17:23,135 Skipping link: not a file: https://pypi.org/simple/galaxy-app/ 2024-02-12T20:17:23,155 Given no hashes to check 1 links for project 'galaxy-app': discarding no candidates 2024-02-12T20:17:23,173 Collecting galaxy-app==23.1.dev0 2024-02-12T20:17:23,175 Created temporary directory: /tmp/pip-unpack-y2ef8na1 2024-02-12T20:17:23,406 Downloading galaxy-app-23.1.dev0.tar.gz (1.1 MB) 2024-02-12T20:17:24,696 Added galaxy-app==23.1.dev0 from https://files.pythonhosted.org/packages/41/07/083718b816053a9f97e5e678ac9bed14b31d3a224026170e58be13f37fba/galaxy-app-23.1.dev0.tar.gz to build tracker '/tmp/pip-build-tracker-1mijl4o5' 2024-02-12T20:17:24,699 Created temporary directory: /tmp/pip-build-env-3s9nsbkd 2024-02-12T20:17:24,703 Installing build dependencies: started 2024-02-12T20:17:24,704 Running command pip subprocess to install build dependencies 2024-02-12T20:17:25,844 Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-02-12T20:17:26,360 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-02-12T20:17:27,775 Collecting setuptools 2024-02-12T20:17:27,790 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.1.0-py3-none-any.whl (819 kB) 2024-02-12T20:17:30,377 Installing collected packages: setuptools 2024-02-12T20:17:32,583 Successfully installed setuptools-69.1.0 2024-02-12T20:17:32,860 [notice] A new release of pip is available: 23.3.1 -> 24.0 2024-02-12T20:17:32,861 [notice] To update, run: python3 -m pip install --upgrade pip 2024-02-12T20:17:33,144 Installing build dependencies: finished with status 'done' 2024-02-12T20:17:33,147 Getting requirements to build wheel: started 2024-02-12T20:17:33,148 Running command Getting requirements to build wheel 2024-02-12T20:17:33,788 running egg_info 2024-02-12T20:17:33,792 writing galaxy_app.egg-info/PKG-INFO 2024-02-12T20:17:33,797 writing dependency_links to galaxy_app.egg-info/dependency_links.txt 2024-02-12T20:17:33,799 writing entry points to galaxy_app.egg-info/entry_points.txt 2024-02-12T20:17:33,801 writing requirements to galaxy_app.egg-info/requires.txt 2024-02-12T20:17:33,802 writing top-level names to galaxy_app.egg-info/top_level.txt 2024-02-12T20:17:33,880 reading manifest file 'galaxy_app.egg-info/SOURCES.txt' 2024-02-12T20:17:33,929 reading manifest template 'MANIFEST.in' 2024-02-12T20:17:34,452 adding license file 'LICENSE' 2024-02-12T20:17:34,492 writing manifest file 'galaxy_app.egg-info/SOURCES.txt' 2024-02-12T20:17:34,583 Getting requirements to build wheel: finished with status 'done' 2024-02-12T20:17:34,590 Installing backend dependencies: started 2024-02-12T20:17:34,592 Running command pip subprocess to install backend dependencies 2024-02-12T20:17:35,735 Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-02-12T20:17:36,256 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-02-12T20:17:36,732 Collecting wheel 2024-02-12T20:17:36,746 Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB) 2024-02-12T20:17:39,005 Installing collected packages: wheel 2024-02-12T20:17:39,228 Creating /tmp/pip-build-env-3s9nsbkd/normal/local/bin 2024-02-12T20:17:39,230 changing mode of /tmp/pip-build-env-3s9nsbkd/normal/local/bin/wheel to 755 2024-02-12T20:17:39,241 Successfully installed wheel-0.42.0 2024-02-12T20:17:39,519 [notice] A new release of pip is available: 23.3.1 -> 24.0 2024-02-12T20:17:39,519 [notice] To update, run: python3 -m pip install --upgrade pip 2024-02-12T20:17:39,747 Installing backend dependencies: finished with status 'done' 2024-02-12T20:17:39,749 Created temporary directory: /tmp/pip-modern-metadata-7zntv20q 2024-02-12T20:17:39,751 Preparing metadata (pyproject.toml): started 2024-02-12T20:17:39,752 Running command Preparing metadata (pyproject.toml) 2024-02-12T20:17:40,296 running dist_info 2024-02-12T20:17:40,317 creating /tmp/pip-modern-metadata-7zntv20q/galaxy_app.egg-info 2024-02-12T20:17:40,320 writing /tmp/pip-modern-metadata-7zntv20q/galaxy_app.egg-info/PKG-INFO 2024-02-12T20:17:40,325 writing dependency_links to /tmp/pip-modern-metadata-7zntv20q/galaxy_app.egg-info/dependency_links.txt 2024-02-12T20:17:40,326 writing entry points to /tmp/pip-modern-metadata-7zntv20q/galaxy_app.egg-info/entry_points.txt 2024-02-12T20:17:40,328 writing requirements to /tmp/pip-modern-metadata-7zntv20q/galaxy_app.egg-info/requires.txt 2024-02-12T20:17:40,329 writing top-level names to /tmp/pip-modern-metadata-7zntv20q/galaxy_app.egg-info/top_level.txt 2024-02-12T20:17:40,331 writing manifest file '/tmp/pip-modern-metadata-7zntv20q/galaxy_app.egg-info/SOURCES.txt' 2024-02-12T20:17:40,422 reading manifest file '/tmp/pip-modern-metadata-7zntv20q/galaxy_app.egg-info/SOURCES.txt' 2024-02-12T20:17:40,424 reading manifest template 'MANIFEST.in' 2024-02-12T20:17:40,908 adding license file 'LICENSE' 2024-02-12T20:17:40,928 writing manifest file '/tmp/pip-modern-metadata-7zntv20q/galaxy_app.egg-info/SOURCES.txt' 2024-02-12T20:17:40,930 creating '/tmp/pip-modern-metadata-7zntv20q/galaxy_app-23.1.dev0.dist-info' 2024-02-12T20:17:41,123 Preparing metadata (pyproject.toml): finished with status 'done' 2024-02-12T20:17:41,128 Source in /tmp/pip-wheel-cgao1668/galaxy-app_3639015d09584cc2b10960684c90de5b has version 23.1.dev0, which satisfies requirement galaxy-app==23.1.dev0 from https://files.pythonhosted.org/packages/41/07/083718b816053a9f97e5e678ac9bed14b31d3a224026170e58be13f37fba/galaxy-app-23.1.dev0.tar.gz 2024-02-12T20:17:41,129 Removed galaxy-app==23.1.dev0 from https://files.pythonhosted.org/packages/41/07/083718b816053a9f97e5e678ac9bed14b31d3a224026170e58be13f37fba/galaxy-app-23.1.dev0.tar.gz from build tracker '/tmp/pip-build-tracker-1mijl4o5' 2024-02-12T20:17:41,136 Created temporary directory: /tmp/pip-unpack-e_lu0yi_ 2024-02-12T20:17:41,137 Created temporary directory: /tmp/pip-unpack-db_4u12y 2024-02-12T20:17:41,181 Building wheels for collected packages: galaxy-app 2024-02-12T20:17:41,185 Created temporary directory: /tmp/pip-wheel-ybmdw70d 2024-02-12T20:17:41,186 Destination directory: /tmp/pip-wheel-ybmdw70d 2024-02-12T20:17:41,188 Building wheel for galaxy-app (pyproject.toml): started 2024-02-12T20:17:41,189 Running command Building wheel for galaxy-app (pyproject.toml) 2024-02-12T20:17:41,773 running bdist_wheel 2024-02-12T20:17:41,814 running build 2024-02-12T20:17:41,814 running build_py 2024-02-12T20:17:41,821 creating build 2024-02-12T20:17:41,822 creating build/lib 2024-02-12T20:17:41,823 creating build/lib/tool_shed_client 2024-02-12T20:17:41,824 copying tool_shed_client/__init__.py -> build/lib/tool_shed_client 2024-02-12T20:17:41,826 creating build/lib/galaxy_ext 2024-02-12T20:17:41,827 copying galaxy_ext/__init__.py -> build/lib/galaxy_ext 2024-02-12T20:17:41,830 creating build/lib/galaxy 2024-02-12T20:17:41,831 copying galaxy/queue_worker.py -> build/lib/galaxy 2024-02-12T20:17:41,834 copying galaxy/structured_app.py -> build/lib/galaxy 2024-02-12T20:17:41,836 copying galaxy/app.py -> build/lib/galaxy 2024-02-12T20:17:41,839 copying galaxy/main_config.py -> build/lib/galaxy 2024-02-12T20:17:41,840 copying galaxy/__init__.py -> build/lib/galaxy 2024-02-12T20:17:41,843 copying galaxy/di.py -> build/lib/galaxy 2024-02-12T20:17:41,844 copying galaxy/main.py -> build/lib/galaxy 2024-02-12T20:17:41,846 copying galaxy/queues.py -> build/lib/galaxy 2024-02-12T20:17:41,848 copying galaxy/config_watchers.py -> build/lib/galaxy 2024-02-12T20:17:41,851 creating build/lib/tool_shed_client/schema 2024-02-12T20:17:41,851 copying tool_shed_client/schema/__init__.py -> build/lib/tool_shed_client/schema 2024-02-12T20:17:41,854 creating build/lib/galaxy_ext/metadata 2024-02-12T20:17:41,855 copying galaxy_ext/metadata/__init__.py -> build/lib/galaxy_ext/metadata 2024-02-12T20:17:41,857 copying galaxy_ext/metadata/set_metadata.py -> build/lib/galaxy_ext/metadata 2024-02-12T20:17:41,859 creating build/lib/galaxy_ext/container_monitor 2024-02-12T20:17:41,860 copying galaxy_ext/container_monitor/monitor.py -> build/lib/galaxy_ext/container_monitor 2024-02-12T20:17:41,861 copying galaxy_ext/container_monitor/__init__.py -> build/lib/galaxy_ext/container_monitor 2024-02-12T20:17:41,863 creating build/lib/galaxy_ext/expressions 2024-02-12T20:17:41,864 copying galaxy_ext/expressions/handle_job.py -> build/lib/galaxy_ext/expressions 2024-02-12T20:17:41,866 copying galaxy_ext/expressions/__init__.py -> build/lib/galaxy_ext/expressions 2024-02-12T20:17:41,869 creating build/lib/galaxy/managers 2024-02-12T20:17:41,870 copying galaxy/managers/jobs.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,873 copying galaxy/managers/tasks.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,875 copying galaxy/managers/citations.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,877 copying galaxy/managers/cloudauthzs.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,879 copying galaxy/managers/ratable.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,881 copying galaxy/managers/sharable.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,884 copying galaxy/managers/visualizations.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,886 copying galaxy/managers/groups.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,888 copying galaxy/managers/cloud.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,890 copying galaxy/managers/markdown_parse.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,892 copying galaxy/managers/tool_data.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,894 copying galaxy/managers/base.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,898 copying galaxy/managers/history_contents.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,900 copying galaxy/managers/collections.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,903 copying galaxy/managers/hdas.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,905 copying galaxy/managers/configuration.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,908 copying galaxy/managers/group_users.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,909 copying galaxy/managers/libraries.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,912 copying galaxy/managers/workflows.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,916 copying galaxy/managers/annotatable.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,918 copying galaxy/managers/datasets.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,921 copying galaxy/managers/tools.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,923 copying galaxy/managers/model_stores.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,926 copying galaxy/managers/interactivetool.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,928 copying galaxy/managers/folders.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,930 copying galaxy/managers/context.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,933 copying galaxy/managers/licenses.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,935 copying galaxy/managers/quotas.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,937 copying galaxy/managers/pages.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,940 copying galaxy/managers/hdcas.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,942 copying galaxy/managers/__init__.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,944 copying galaxy/managers/metrics.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,946 copying galaxy/managers/api_keys.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,947 copying galaxy/managers/deletable.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,949 copying galaxy/managers/collections_util.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,951 copying galaxy/managers/export_tracker.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,953 copying galaxy/managers/session.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,955 copying galaxy/managers/roles.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,956 copying galaxy/managers/display_applications.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,958 copying galaxy/managers/executables.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,960 copying galaxy/managers/group_roles.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,961 copying galaxy/managers/markdown_util.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,965 copying galaxy/managers/notification.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,967 copying galaxy/managers/job_connections.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,969 copying galaxy/managers/datatypes.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,971 copying galaxy/managers/secured.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,973 copying galaxy/managers/remote_files.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,975 copying galaxy/managers/rbac_secured.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,977 copying galaxy/managers/histories.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,980 copying galaxy/managers/users.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,983 copying galaxy/managers/tags.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,985 copying galaxy/managers/taggable.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,987 copying galaxy/managers/genomes.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,988 copying galaxy/managers/library_datasets.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,991 copying galaxy/managers/lddas.py -> build/lib/galaxy/managers 2024-02-12T20:17:41,993 creating build/lib/galaxy/dependencies 2024-02-12T20:17:41,994 copying galaxy/dependencies/__init__.py -> build/lib/galaxy/dependencies 2024-02-12T20:17:41,996 creating build/lib/galaxy/jobs 2024-02-12T20:17:41,997 copying galaxy/jobs/rule_helper.py -> build/lib/galaxy/jobs 2024-02-12T20:17:42,000 copying galaxy/jobs/dynamic_tool_destination.py -> build/lib/galaxy/jobs 2024-02-12T20:17:42,003 copying galaxy/jobs/mapper.py -> build/lib/galaxy/jobs 2024-02-12T20:17:42,005 copying galaxy/jobs/manager.py -> build/lib/galaxy/jobs 2024-02-12T20:17:42,007 copying galaxy/jobs/__init__.py -> build/lib/galaxy/jobs 2024-02-12T20:17:42,013 copying galaxy/jobs/handler.py -> build/lib/galaxy/jobs 2024-02-12T20:17:42,016 copying galaxy/jobs/stock_rules.py -> build/lib/galaxy/jobs 2024-02-12T20:17:42,018 copying galaxy/jobs/command_factory.py -> build/lib/galaxy/jobs 2024-02-12T20:17:42,021 creating build/lib/galaxy/app_unittest_utils 2024-02-12T20:17:42,022 copying galaxy/app_unittest_utils/galaxy_mock.py -> build/lib/galaxy/app_unittest_utils 2024-02-12T20:17:42,024 copying galaxy/app_unittest_utils/__init__.py -> build/lib/galaxy/app_unittest_utils 2024-02-12T20:17:42,025 copying galaxy/app_unittest_utils/tools_support.py -> build/lib/galaxy/app_unittest_utils 2024-02-12T20:17:42,028 creating build/lib/galaxy/actions 2024-02-12T20:17:42,029 copying galaxy/actions/__init__.py -> build/lib/galaxy/actions 2024-02-12T20:17:42,030 copying galaxy/actions/library.py -> build/lib/galaxy/actions 2024-02-12T20:17:42,033 creating build/lib/galaxy/visualization 2024-02-12T20:17:42,034 copying galaxy/visualization/__init__.py -> build/lib/galaxy/visualization 2024-02-12T20:17:42,036 copying galaxy/visualization/genomes.py -> build/lib/galaxy/visualization 2024-02-12T20:17:42,039 creating build/lib/galaxy/tools 2024-02-12T20:17:42,040 copying galaxy/tools/biotools.py -> build/lib/galaxy/tools 2024-02-12T20:17:42,041 copying galaxy/tools/test.py -> build/lib/galaxy/tools 2024-02-12T20:17:42,044 copying galaxy/tools/execute.py -> build/lib/galaxy/tools 2024-02-12T20:17:42,046 copying galaxy/tools/__init__.py -> build/lib/galaxy/tools 2024-02-12T20:17:42,050 copying galaxy/tools/exception_handling.py -> build/lib/galaxy/tools 2024-02-12T20:17:42,052 copying galaxy/tools/data_fetch.py -> build/lib/galaxy/tools 2024-02-12T20:17:42,054 copying galaxy/tools/cache.py -> build/lib/galaxy/tools 2024-02-12T20:17:42,056 copying galaxy/tools/wrappers.py -> build/lib/galaxy/tools 2024-02-12T20:17:42,059 copying galaxy/tools/remote_tool_eval.py -> build/lib/galaxy/tools 2024-02-12T20:17:42,061 copying galaxy/tools/recommendations.py -> build/lib/galaxy/tools 2024-02-12T20:17:42,063 copying galaxy/tools/special_tools.py -> build/lib/galaxy/tools 2024-02-12T20:17:42,065 copying galaxy/tools/repositories.py -> build/lib/galaxy/tools 2024-02-12T20:17:42,066 copying galaxy/tools/errors.py -> build/lib/galaxy/tools 2024-02-12T20:17:42,069 copying galaxy/tools/evaluation.py -> build/lib/galaxy/tools 2024-02-12T20:17:42,072 creating build/lib/galaxy/tool_shed 2024-02-12T20:17:42,073 copying galaxy/tool_shed/__init__.py -> build/lib/galaxy/tool_shed 2024-02-12T20:17:42,074 copying galaxy/tool_shed/cache.py -> build/lib/galaxy/tool_shed 2024-02-12T20:17:42,076 copying galaxy/tool_shed/repository_type.py -> build/lib/galaxy/tool_shed 2024-02-12T20:17:42,078 creating build/lib/galaxy/celery 2024-02-12T20:17:42,079 copying galaxy/celery/tasks.py -> build/lib/galaxy/celery 2024-02-12T20:17:42,081 copying galaxy/celery/__init__.py -> build/lib/galaxy/celery 2024-02-12T20:17:42,083 copying galaxy/celery/_serialization.py -> build/lib/galaxy/celery 2024-02-12T20:17:42,085 creating build/lib/galaxy/work 2024-02-12T20:17:42,086 copying galaxy/work/context.py -> build/lib/galaxy/work 2024-02-12T20:17:42,088 copying galaxy/work/__init__.py -> build/lib/galaxy/work 2024-02-12T20:17:42,090 creating build/lib/galaxy/webhooks 2024-02-12T20:17:42,091 copying galaxy/webhooks/__init__.py -> build/lib/galaxy/webhooks 2024-02-12T20:17:42,093 creating build/lib/galaxy/authnz 2024-02-12T20:17:42,094 copying galaxy/authnz/__init__.py -> build/lib/galaxy/authnz 2024-02-12T20:17:42,096 copying galaxy/authnz/managers.py -> build/lib/galaxy/authnz 2024-02-12T20:17:42,099 copying galaxy/authnz/psa_authnz.py -> build/lib/galaxy/authnz 2024-02-12T20:17:42,101 copying galaxy/authnz/custos_authnz.py -> build/lib/galaxy/authnz 2024-02-12T20:17:42,104 copying galaxy/authnz/util.py -> build/lib/galaxy/authnz 2024-02-12T20:17:42,106 creating build/lib/galaxy/workflow 2024-02-12T20:17:42,107 copying galaxy/workflow/scheduling_manager.py -> build/lib/galaxy/workflow 2024-02-12T20:17:42,109 copying galaxy/workflow/run_request.py -> build/lib/galaxy/workflow 2024-02-12T20:17:42,112 copying galaxy/workflow/extract.py -> build/lib/galaxy/workflow 2024-02-12T20:17:42,114 copying galaxy/workflow/trs_proxy.py -> build/lib/galaxy/workflow 2024-02-12T20:17:42,116 copying galaxy/workflow/__init__.py -> build/lib/galaxy/workflow 2024-02-12T20:17:42,118 copying galaxy/workflow/run.py -> build/lib/galaxy/workflow 2024-02-12T20:17:42,121 copying galaxy/workflow/modules.py -> build/lib/galaxy/workflow 2024-02-12T20:17:42,124 copying galaxy/workflow/render.py -> build/lib/galaxy/workflow 2024-02-12T20:17:42,127 copying galaxy/workflow/steps.py -> build/lib/galaxy/workflow 2024-02-12T20:17:42,129 creating build/lib/galaxy/forms 2024-02-12T20:17:42,130 copying galaxy/forms/forms.py -> build/lib/galaxy/forms 2024-02-12T20:17:42,133 copying galaxy/forms/__init__.py -> build/lib/galaxy/forms 2024-02-12T20:17:42,136 creating build/lib/galaxy/jobs/runners 2024-02-12T20:17:42,137 copying galaxy/jobs/runners/tasks.py -> build/lib/galaxy/jobs/runners 2024-02-12T20:17:42,140 copying galaxy/jobs/runners/slurm.py -> build/lib/galaxy/jobs/runners 2024-02-12T20:17:42,142 copying galaxy/jobs/runners/local.py -> build/lib/galaxy/jobs/runners 2024-02-12T20:17:42,144 copying galaxy/jobs/runners/drmaa.py -> build/lib/galaxy/jobs/runners 2024-02-12T20:17:42,147 copying galaxy/jobs/runners/aws.py -> build/lib/galaxy/jobs/runners 2024-02-12T20:17:42,150 copying galaxy/jobs/runners/condor.py -> build/lib/galaxy/jobs/runners 2024-02-12T20:17:42,153 copying galaxy/jobs/runners/cli.py -> build/lib/galaxy/jobs/runners 2024-02-12T20:17:42,155 copying galaxy/jobs/runners/__init__.py -> build/lib/galaxy/jobs/runners 2024-02-12T20:17:42,158 copying galaxy/jobs/runners/kubernetes.py -> build/lib/galaxy/jobs/runners 2024-02-12T20:17:42,162 copying galaxy/jobs/runners/state_handler_factory.py -> build/lib/galaxy/jobs/runners 2024-02-12T20:17:42,163 copying galaxy/jobs/runners/pulsar.py -> build/lib/galaxy/jobs/runners 2024-02-12T20:17:42,167 copying galaxy/jobs/runners/pbs.py -> build/lib/galaxy/jobs/runners 2024-02-12T20:17:42,170 copying galaxy/jobs/runners/univa.py -> build/lib/galaxy/jobs/runners 2024-02-12T20:17:42,173 copying galaxy/jobs/runners/godocker.py -> build/lib/galaxy/jobs/runners 2024-02-12T20:17:42,176 copying galaxy/jobs/runners/chronos.py -> build/lib/galaxy/jobs/runners 2024-02-12T20:17:42,179 creating build/lib/galaxy/jobs/splitters 2024-02-12T20:17:42,180 copying galaxy/jobs/splitters/basic.py -> build/lib/galaxy/jobs/splitters 2024-02-12T20:17:42,182 copying galaxy/jobs/splitters/__init__.py -> build/lib/galaxy/jobs/splitters 2024-02-12T20:17:42,184 copying galaxy/jobs/splitters/multi.py -> build/lib/galaxy/jobs/splitters 2024-02-12T20:17:42,187 creating build/lib/galaxy/jobs/rules 2024-02-12T20:17:42,188 copying galaxy/jobs/rules/__init__.py -> build/lib/galaxy/jobs/rules 2024-02-12T20:17:42,190 creating build/lib/galaxy/jobs/runners/state_handlers 2024-02-12T20:17:42,192 copying galaxy/jobs/runners/state_handlers/__init__.py -> build/lib/galaxy/jobs/runners/state_handlers 2024-02-12T20:17:42,193 copying galaxy/jobs/runners/state_handlers/_safe_eval.py -> build/lib/galaxy/jobs/runners/state_handlers 2024-02-12T20:17:42,196 copying galaxy/jobs/runners/state_handlers/resubmit.py -> build/lib/galaxy/jobs/runners/state_handlers 2024-02-12T20:17:42,199 creating build/lib/galaxy/jobs/runners/util 2024-02-12T20:17:42,200 copying galaxy/jobs/runners/util/external.py -> build/lib/galaxy/jobs/runners/util 2024-02-12T20:17:42,203 copying galaxy/jobs/runners/util/sudo.py -> build/lib/galaxy/jobs/runners/util 2024-02-12T20:17:42,205 copying galaxy/jobs/runners/util/fork_safe_write.py -> build/lib/galaxy/jobs/runners/util 2024-02-12T20:17:42,207 copying galaxy/jobs/runners/util/process_groups.py -> build/lib/galaxy/jobs/runners/util 2024-02-12T20:17:42,209 copying galaxy/jobs/runners/util/pykube_util.py -> build/lib/galaxy/jobs/runners/util 2024-02-12T20:17:42,212 copying galaxy/jobs/runners/util/__init__.py -> build/lib/galaxy/jobs/runners/util 2024-02-12T20:17:42,214 copying galaxy/jobs/runners/util/kill.py -> build/lib/galaxy/jobs/runners/util 2024-02-12T20:17:42,216 copying galaxy/jobs/runners/util/env.py -> build/lib/galaxy/jobs/runners/util 2024-02-12T20:17:42,218 creating build/lib/galaxy/jobs/runners/util/job_script 2024-02-12T20:17:42,220 copying galaxy/jobs/runners/util/job_script/__init__.py -> build/lib/galaxy/jobs/runners/util/job_script 2024-02-12T20:17:42,223 creating build/lib/galaxy/jobs/runners/util/cli 2024-02-12T20:17:42,224 copying galaxy/jobs/runners/util/cli/__init__.py -> build/lib/galaxy/jobs/runners/util/cli 2024-02-12T20:17:42,226 copying galaxy/jobs/runners/util/cli/factory.py -> build/lib/galaxy/jobs/runners/util/cli 2024-02-12T20:17:42,228 creating build/lib/galaxy/jobs/runners/util/condor 2024-02-12T20:17:42,229 copying galaxy/jobs/runners/util/condor/__init__.py -> build/lib/galaxy/jobs/runners/util/condor 2024-02-12T20:17:42,232 creating build/lib/galaxy/jobs/runners/util/cli/job 2024-02-12T20:17:42,233 copying galaxy/jobs/runners/util/cli/job/slurm.py -> build/lib/galaxy/jobs/runners/util/cli/job 2024-02-12T20:17:42,235 copying galaxy/jobs/runners/util/cli/job/torque.py -> build/lib/galaxy/jobs/runners/util/cli/job 2024-02-12T20:17:42,236 copying galaxy/jobs/runners/util/cli/job/__init__.py -> build/lib/galaxy/jobs/runners/util/cli/job 2024-02-12T20:17:42,238 copying galaxy/jobs/runners/util/cli/job/lsf.py -> build/lib/galaxy/jobs/runners/util/cli/job 2024-02-12T20:17:42,240 copying galaxy/jobs/runners/util/cli/job/pbs.py -> build/lib/galaxy/jobs/runners/util/cli/job 2024-02-12T20:17:42,242 copying galaxy/jobs/runners/util/cli/job/slurm_torque.py -> build/lib/galaxy/jobs/runners/util/cli/job 2024-02-12T20:17:42,244 creating build/lib/galaxy/jobs/runners/util/cli/shell 2024-02-12T20:17:42,245 copying galaxy/jobs/runners/util/cli/shell/local.py -> build/lib/galaxy/jobs/runners/util/cli/shell 2024-02-12T20:17:42,247 copying galaxy/jobs/runners/util/cli/shell/rsh.py -> build/lib/galaxy/jobs/runners/util/cli/shell 2024-02-12T20:17:42,248 copying galaxy/jobs/runners/util/cli/shell/__init__.py -> build/lib/galaxy/jobs/runners/util/cli/shell 2024-02-12T20:17:42,251 creating build/lib/galaxy/visualization/plugins 2024-02-12T20:17:42,251 copying galaxy/visualization/plugins/plugin.py -> build/lib/galaxy/visualization/plugins 2024-02-12T20:17:42,254 copying galaxy/visualization/plugins/registry.py -> build/lib/galaxy/visualization/plugins 2024-02-12T20:17:42,256 copying galaxy/visualization/plugins/__init__.py -> build/lib/galaxy/visualization/plugins 2024-02-12T20:17:42,257 copying galaxy/visualization/plugins/resource_parser.py -> build/lib/galaxy/visualization/plugins 2024-02-12T20:17:42,260 copying galaxy/visualization/plugins/config_parser.py -> build/lib/galaxy/visualization/plugins 2024-02-12T20:17:42,262 copying galaxy/visualization/plugins/utils.py -> build/lib/galaxy/visualization/plugins 2024-02-12T20:17:42,264 creating build/lib/galaxy/visualization/genome 2024-02-12T20:17:42,265 copying galaxy/visualization/genome/__init__.py -> build/lib/galaxy/visualization/genome 2024-02-12T20:17:42,267 creating build/lib/galaxy/visualization/data_providers 2024-02-12T20:17:42,269 copying galaxy/visualization/data_providers/basic.py -> build/lib/galaxy/visualization/data_providers 2024-02-12T20:17:42,271 copying galaxy/visualization/data_providers/genome.py -> build/lib/galaxy/visualization/data_providers 2024-02-12T20:17:42,274 copying galaxy/visualization/data_providers/registry.py -> build/lib/galaxy/visualization/data_providers 2024-02-12T20:17:42,276 copying galaxy/visualization/data_providers/__init__.py -> build/lib/galaxy/visualization/data_providers 2024-02-12T20:17:42,278 copying galaxy/visualization/data_providers/cigar.py -> build/lib/galaxy/visualization/data_providers 2024-02-12T20:17:42,280 creating build/lib/galaxy/visualization/tracks 2024-02-12T20:17:42,280 copying galaxy/visualization/tracks/__init__.py -> build/lib/galaxy/visualization/tracks 2024-02-12T20:17:42,283 creating build/lib/galaxy/visualization/data_providers/phyloviz 2024-02-12T20:17:42,284 copying galaxy/visualization/data_providers/phyloviz/nexusparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2024-02-12T20:17:42,285 copying galaxy/visualization/data_providers/phyloviz/__init__.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2024-02-12T20:17:42,287 copying galaxy/visualization/data_providers/phyloviz/newickparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2024-02-12T20:17:42,289 copying galaxy/visualization/data_providers/phyloviz/baseparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2024-02-12T20:17:42,291 copying galaxy/visualization/data_providers/phyloviz/phyloxmlparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2024-02-12T20:17:42,293 creating build/lib/galaxy/tools/filters 2024-02-12T20:17:42,295 copying galaxy/tools/filters/__init__.py -> build/lib/galaxy/tools/filters 2024-02-12T20:17:42,297 creating build/lib/galaxy/tools/data_manager 2024-02-12T20:17:42,298 copying galaxy/tools/data_manager/manager.py -> build/lib/galaxy/tools/data_manager 2024-02-12T20:17:42,300 copying galaxy/tools/data_manager/__init__.py -> build/lib/galaxy/tools/data_manager 2024-02-12T20:17:42,302 creating build/lib/galaxy/tools/actions 2024-02-12T20:17:42,303 copying galaxy/tools/actions/data_manager.py -> build/lib/galaxy/tools/actions 2024-02-12T20:17:42,305 copying galaxy/tools/actions/model_operations.py -> build/lib/galaxy/tools/actions 2024-02-12T20:17:42,307 copying galaxy/tools/actions/history_imp_exp.py -> build/lib/galaxy/tools/actions 2024-02-12T20:17:42,309 copying galaxy/tools/actions/__init__.py -> build/lib/galaxy/tools/actions 2024-02-12T20:17:42,313 copying galaxy/tools/actions/upload_common.py -> build/lib/galaxy/tools/actions 2024-02-12T20:17:42,316 copying galaxy/tools/actions/data_source.py -> build/lib/galaxy/tools/actions 2024-02-12T20:17:42,318 copying galaxy/tools/actions/metadata.py -> build/lib/galaxy/tools/actions 2024-02-12T20:17:42,320 copying galaxy/tools/actions/upload.py -> build/lib/galaxy/tools/actions 2024-02-12T20:17:42,322 creating build/lib/galaxy/tools/error_reports 2024-02-12T20:17:42,323 copying galaxy/tools/error_reports/__init__.py -> build/lib/galaxy/tools/error_reports 2024-02-12T20:17:42,326 creating build/lib/galaxy/tools/imp_exp 2024-02-12T20:17:42,327 copying galaxy/tools/imp_exp/unpack_tar_gz_archive.py -> build/lib/galaxy/tools/imp_exp 2024-02-12T20:17:42,329 copying galaxy/tools/imp_exp/__init__.py -> build/lib/galaxy/tools/imp_exp 2024-02-12T20:17:42,330 copying galaxy/tools/imp_exp/export_history.py -> build/lib/galaxy/tools/imp_exp 2024-02-12T20:17:42,333 creating build/lib/galaxy/tools/util 2024-02-12T20:17:42,333 copying galaxy/tools/util/maf_utilities.py -> build/lib/galaxy/tools/util 2024-02-12T20:17:42,336 copying galaxy/tools/util/__init__.py -> build/lib/galaxy/tools/util 2024-02-12T20:17:42,338 creating build/lib/galaxy/tools/data 2024-02-12T20:17:42,339 copying galaxy/tools/data/__init__.py -> build/lib/galaxy/tools/data 2024-02-12T20:17:42,342 creating build/lib/galaxy/tools/expressions 2024-02-12T20:17:42,343 copying galaxy/tools/expressions/script.py -> build/lib/galaxy/tools/expressions 2024-02-12T20:17:42,345 copying galaxy/tools/expressions/__init__.py -> build/lib/galaxy/tools/expressions 2024-02-12T20:17:42,347 copying galaxy/tools/expressions/evaluation.py -> build/lib/galaxy/tools/expressions 2024-02-12T20:17:42,349 copying galaxy/tools/expressions/util.py -> build/lib/galaxy/tools/expressions 2024-02-12T20:17:42,351 creating build/lib/galaxy/tools/parameters 2024-02-12T20:17:42,352 copying galaxy/tools/parameters/grouping.py -> build/lib/galaxy/tools/parameters 2024-02-12T20:17:42,355 copying galaxy/tools/parameters/history_query.py -> build/lib/galaxy/tools/parameters 2024-02-12T20:17:42,357 copying galaxy/tools/parameters/basic.py -> build/lib/galaxy/tools/parameters 2024-02-12T20:17:42,362 copying galaxy/tools/parameters/validation.py -> build/lib/galaxy/tools/parameters 2024-02-12T20:17:42,365 copying galaxy/tools/parameters/dynamic_options.py -> build/lib/galaxy/tools/parameters 2024-02-12T20:17:42,368 copying galaxy/tools/parameters/dataset_matcher.py -> build/lib/galaxy/tools/parameters 2024-02-12T20:17:42,370 copying galaxy/tools/parameters/__init__.py -> build/lib/galaxy/tools/parameters 2024-02-12T20:17:42,373 copying galaxy/tools/parameters/wrapped.py -> build/lib/galaxy/tools/parameters 2024-02-12T20:17:42,375 copying galaxy/tools/parameters/sanitize.py -> build/lib/galaxy/tools/parameters 2024-02-12T20:17:42,377 copying galaxy/tools/parameters/meta.py -> build/lib/galaxy/tools/parameters 2024-02-12T20:17:42,379 copying galaxy/tools/parameters/wrapped_json.py -> build/lib/galaxy/tools/parameters 2024-02-12T20:17:42,381 copying galaxy/tools/parameters/input_translation.py -> build/lib/galaxy/tools/parameters 2024-02-12T20:17:42,384 creating build/lib/galaxy/tools/search 2024-02-12T20:17:42,385 copying galaxy/tools/search/__init__.py -> build/lib/galaxy/tools/search 2024-02-12T20:17:42,389 creating build/lib/galaxy/tools/error_reports/plugins 2024-02-12T20:17:42,389 copying galaxy/tools/error_reports/plugins/email.py -> build/lib/galaxy/tools/error_reports/plugins 2024-02-12T20:17:42,391 copying galaxy/tools/error_reports/plugins/__init__.py -> build/lib/galaxy/tools/error_reports/plugins 2024-02-12T20:17:42,393 copying galaxy/tools/error_reports/plugins/sentry.py -> build/lib/galaxy/tools/error_reports/plugins 2024-02-12T20:17:42,395 copying galaxy/tools/error_reports/plugins/gitlab.py -> build/lib/galaxy/tools/error_reports/plugins 2024-02-12T20:17:42,398 copying galaxy/tools/error_reports/plugins/influxdb.py -> build/lib/galaxy/tools/error_reports/plugins 2024-02-12T20:17:42,400 copying galaxy/tools/error_reports/plugins/github.py -> build/lib/galaxy/tools/error_reports/plugins 2024-02-12T20:17:42,402 copying galaxy/tools/error_reports/plugins/slack.py -> build/lib/galaxy/tools/error_reports/plugins 2024-02-12T20:17:42,404 copying galaxy/tools/error_reports/plugins/json.py -> build/lib/galaxy/tools/error_reports/plugins 2024-02-12T20:17:42,406 copying galaxy/tools/error_reports/plugins/base_git.py -> build/lib/galaxy/tools/error_reports/plugins 2024-02-12T20:17:42,408 creating build/lib/galaxy/tools/util/galaxyops 2024-02-12T20:17:42,409 copying galaxy/tools/util/galaxyops/__init__.py -> build/lib/galaxy/tools/util/galaxyops 2024-02-12T20:17:42,411 creating build/lib/galaxy/tool_shed/metadata 2024-02-12T20:17:42,412 copying galaxy/tool_shed/metadata/__init__.py -> build/lib/galaxy/tool_shed/metadata 2024-02-12T20:17:42,413 copying galaxy/tool_shed/metadata/metadata_generator.py -> build/lib/galaxy/tool_shed/metadata 2024-02-12T20:17:42,417 creating build/lib/galaxy/tool_shed/tools 2024-02-12T20:17:42,418 copying galaxy/tool_shed/tools/data_table_manager.py -> build/lib/galaxy/tool_shed/tools 2024-02-12T20:17:42,421 copying galaxy/tool_shed/tools/__init__.py -> build/lib/galaxy/tool_shed/tools 2024-02-12T20:17:42,422 copying galaxy/tool_shed/tools/tool_validator.py -> build/lib/galaxy/tool_shed/tools 2024-02-12T20:17:42,425 creating build/lib/galaxy/tool_shed/util 2024-02-12T20:17:42,426 copying galaxy/tool_shed/util/tool_util.py -> build/lib/galaxy/tool_shed/util 2024-02-12T20:17:42,428 copying galaxy/tool_shed/util/container_util.py -> build/lib/galaxy/tool_shed/util 2024-02-12T20:17:42,430 copying galaxy/tool_shed/util/__init__.py -> build/lib/galaxy/tool_shed/util 2024-02-12T20:17:42,431 copying galaxy/tool_shed/util/dependency_display.py -> build/lib/galaxy/tool_shed/util 2024-02-12T20:17:42,434 copying galaxy/tool_shed/util/utility_container_manager.py -> build/lib/galaxy/tool_shed/util 2024-02-12T20:17:42,437 copying galaxy/tool_shed/util/metadata_util.py -> build/lib/galaxy/tool_shed/util 2024-02-12T20:17:42,439 copying galaxy/tool_shed/util/tool_dependency_util.py -> build/lib/galaxy/tool_shed/util 2024-02-12T20:17:42,442 copying galaxy/tool_shed/util/hg_util.py -> build/lib/galaxy/tool_shed/util 2024-02-12T20:17:42,444 copying galaxy/tool_shed/util/basic_util.py -> build/lib/galaxy/tool_shed/util 2024-02-12T20:17:42,446 copying galaxy/tool_shed/util/shed_util_common.py -> build/lib/galaxy/tool_shed/util 2024-02-12T20:17:42,448 copying galaxy/tool_shed/util/repository_util.py -> build/lib/galaxy/tool_shed/util 2024-02-12T20:17:42,451 creating build/lib/galaxy/tool_shed/galaxy_install 2024-02-12T20:17:42,452 copying galaxy/tool_shed/galaxy_install/update_repository_manager.py -> build/lib/galaxy/tool_shed/galaxy_install 2024-02-12T20:17:42,455 copying galaxy/tool_shed/galaxy_install/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install 2024-02-12T20:17:42,456 copying galaxy/tool_shed/galaxy_install/install_manager.py -> build/lib/galaxy/tool_shed/galaxy_install 2024-02-12T20:17:42,460 copying galaxy/tool_shed/galaxy_install/installed_repository_manager.py -> build/lib/galaxy/tool_shed/galaxy_install 2024-02-12T20:17:42,464 creating build/lib/galaxy/tool_shed/galaxy_install/metadata 2024-02-12T20:17:42,465 copying galaxy/tool_shed/galaxy_install/metadata/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/metadata 2024-02-12T20:17:42,466 copying galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/metadata 2024-02-12T20:17:42,469 creating build/lib/galaxy/tool_shed/galaxy_install/tools 2024-02-12T20:17:42,470 copying galaxy/tool_shed/galaxy_install/tools/data_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/tools 2024-02-12T20:17:42,472 copying galaxy/tool_shed/galaxy_install/tools/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/tools 2024-02-12T20:17:42,473 copying galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/tools 2024-02-12T20:17:42,478 creating build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies 2024-02-12T20:17:42,480 copying galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies 2024-02-12T20:17:42,481 copying galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies 2024-02-12T20:17:42,485 creating build/lib/galaxy/workflow/reports 2024-02-12T20:17:42,486 copying galaxy/workflow/reports/__init__.py -> build/lib/galaxy/workflow/reports 2024-02-12T20:17:42,488 creating build/lib/galaxy/workflow/resources 2024-02-12T20:17:42,489 copying galaxy/workflow/resources/__init__.py -> build/lib/galaxy/workflow/resources 2024-02-12T20:17:42,492 creating build/lib/galaxy/workflow/schedulers 2024-02-12T20:17:42,493 copying galaxy/workflow/schedulers/core.py -> build/lib/galaxy/workflow/schedulers 2024-02-12T20:17:42,494 copying galaxy/workflow/schedulers/__init__.py -> build/lib/galaxy/workflow/schedulers 2024-02-12T20:17:42,497 creating build/lib/galaxy/workflow/refactor 2024-02-12T20:17:42,498 copying galaxy/workflow/refactor/execute.py -> build/lib/galaxy/workflow/refactor 2024-02-12T20:17:42,501 copying galaxy/workflow/refactor/__init__.py -> build/lib/galaxy/workflow/refactor 2024-02-12T20:17:42,502 copying galaxy/workflow/refactor/schema.py -> build/lib/galaxy/workflow/refactor 2024-02-12T20:17:42,505 creating build/lib/galaxy/workflow/reports/generators 2024-02-12T20:17:42,506 copying galaxy/workflow/reports/generators/__init__.py -> build/lib/galaxy/workflow/reports/generators 2024-02-12T20:17:42,508 copying galaxy/workflow/reports/generators/markdown.py -> build/lib/galaxy/workflow/reports/generators 2024-02-12T20:17:42,510 running egg_info 2024-02-12T20:17:42,513 writing galaxy_app.egg-info/PKG-INFO 2024-02-12T20:17:42,517 writing dependency_links to galaxy_app.egg-info/dependency_links.txt 2024-02-12T20:17:42,519 writing entry points to galaxy_app.egg-info/entry_points.txt 2024-02-12T20:17:42,521 writing requirements to galaxy_app.egg-info/requires.txt 2024-02-12T20:17:42,522 writing top-level names to galaxy_app.egg-info/top_level.txt 2024-02-12T20:17:42,577 reading manifest file 'galaxy_app.egg-info/SOURCES.txt' 2024-02-12T20:17:42,591 reading manifest template 'MANIFEST.in' 2024-02-12T20:17:43,079 adding license file 'LICENSE' 2024-02-12T20:17:43,106 writing manifest file 'galaxy_app.egg-info/SOURCES.txt' 2024-02-12T20:17:43,111 /tmp/pip-build-env-3s9nsbkd/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled' is absent from the `packages` configuration. 2024-02-12T20:17:43,111 !! 2024-02-12T20:17:43,113 ******************************************************************************** 2024-02-12T20:17:43,113 ############################ 2024-02-12T20:17:43,114 # Package would be ignored # 2024-02-12T20:17:43,115 ############################ 2024-02-12T20:17:43,115 Python recognizes 'galaxy.tools.bundled' as an importable package[^1], 2024-02-12T20:17:43,116 but it is absent from setuptools' `packages` configuration. 2024-02-12T20:17:43,116 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-12T20:17:43,117 package, please make sure that 'galaxy.tools.bundled' is explicitly added 2024-02-12T20:17:43,117 to the `packages` configuration field. 2024-02-12T20:17:43,118 Alternatively, you can also rely on setuptools' discovery methods 2024-02-12T20:17:43,118 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-12T20:17:43,119 instead of `find_packages(...)`/`find:`). 2024-02-12T20:17:43,120 You can read more about "package discovery" on setuptools documentation page: 2024-02-12T20:17:43,121 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-12T20:17:43,121 If you don't want 'galaxy.tools.bundled' to be distributed and are 2024-02-12T20:17:43,122 already explicitly excluding 'galaxy.tools.bundled' via 2024-02-12T20:17:43,122 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-12T20:17:43,123 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-12T20:17:43,123 combination with a more fine grained `package-data` configuration. 2024-02-12T20:17:43,124 You can read more about "package data files" on setuptools documentation page: 2024-02-12T20:17:43,125 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-12T20:17:43,127 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-12T20:17:43,127 even if it does not contain any `.py` files. 2024-02-12T20:17:43,128 On the other hand, currently there is no concept of package data 2024-02-12T20:17:43,128 directory, all directories are treated like packages. 2024-02-12T20:17:43,129 ******************************************************************************** 2024-02-12T20:17:43,130 !! 2024-02-12T20:17:43,131 check.warn(importable) 2024-02-12T20:17:43,131 /tmp/pip-build-env-3s9nsbkd/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.data_export' is absent from the `packages` configuration. 2024-02-12T20:17:43,132 !! 2024-02-12T20:17:43,133 ******************************************************************************** 2024-02-12T20:17:43,134 ############################ 2024-02-12T20:17:43,134 # Package would be ignored # 2024-02-12T20:17:43,135 ############################ 2024-02-12T20:17:43,135 Python recognizes 'galaxy.tools.bundled.data_export' as an importable package[^1], 2024-02-12T20:17:43,136 but it is absent from setuptools' `packages` configuration. 2024-02-12T20:17:43,137 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-12T20:17:43,137 package, please make sure that 'galaxy.tools.bundled.data_export' is explicitly added 2024-02-12T20:17:43,138 to the `packages` configuration field. 2024-02-12T20:17:43,139 Alternatively, you can also rely on setuptools' discovery methods 2024-02-12T20:17:43,139 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-12T20:17:43,140 instead of `find_packages(...)`/`find:`). 2024-02-12T20:17:43,141 You can read more about "package discovery" on setuptools documentation page: 2024-02-12T20:17:43,143 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-12T20:17:43,144 If you don't want 'galaxy.tools.bundled.data_export' to be distributed and are 2024-02-12T20:17:43,145 already explicitly excluding 'galaxy.tools.bundled.data_export' via 2024-02-12T20:17:43,146 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-12T20:17:43,146 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-12T20:17:43,146 combination with a more fine grained `package-data` configuration. 2024-02-12T20:17:43,147 You can read more about "package data files" on setuptools documentation page: 2024-02-12T20:17:43,148 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-12T20:17:43,149 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-12T20:17:43,150 even if it does not contain any `.py` files. 2024-02-12T20:17:43,150 On the other hand, currently there is no concept of package data 2024-02-12T20:17:43,150 directory, all directories are treated like packages. 2024-02-12T20:17:43,151 ******************************************************************************** 2024-02-12T20:17:43,152 !! 2024-02-12T20:17:43,152 check.warn(importable) 2024-02-12T20:17:43,153 /tmp/pip-build-env-3s9nsbkd/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.data_source' is absent from the `packages` configuration. 2024-02-12T20:17:43,153 !! 2024-02-12T20:17:43,154 ******************************************************************************** 2024-02-12T20:17:43,155 ############################ 2024-02-12T20:17:43,155 # Package would be ignored # 2024-02-12T20:17:43,156 ############################ 2024-02-12T20:17:43,156 Python recognizes 'galaxy.tools.bundled.data_source' as an importable package[^1], 2024-02-12T20:17:43,157 but it is absent from setuptools' `packages` configuration. 2024-02-12T20:17:43,158 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-12T20:17:43,158 package, please make sure that 'galaxy.tools.bundled.data_source' is explicitly added 2024-02-12T20:17:43,159 to the `packages` configuration field. 2024-02-12T20:17:43,160 Alternatively, you can also rely on setuptools' discovery methods 2024-02-12T20:17:43,160 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-12T20:17:43,161 instead of `find_packages(...)`/`find:`). 2024-02-12T20:17:43,162 You can read more about "package discovery" on setuptools documentation page: 2024-02-12T20:17:43,163 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-12T20:17:43,164 If you don't want 'galaxy.tools.bundled.data_source' to be distributed and are 2024-02-12T20:17:43,165 already explicitly excluding 'galaxy.tools.bundled.data_source' via 2024-02-12T20:17:43,165 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-12T20:17:43,165 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-12T20:17:43,166 combination with a more fine grained `package-data` configuration. 2024-02-12T20:17:43,167 You can read more about "package data files" on setuptools documentation page: 2024-02-12T20:17:43,168 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-12T20:17:43,169 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-12T20:17:43,170 even if it does not contain any `.py` files. 2024-02-12T20:17:43,171 On the other hand, currently there is no concept of package data 2024-02-12T20:17:43,171 directory, all directories are treated like packages. 2024-02-12T20:17:43,172 ******************************************************************************** 2024-02-12T20:17:43,173 !! 2024-02-12T20:17:43,174 check.warn(importable) 2024-02-12T20:17:43,174 /tmp/pip-build-env-3s9nsbkd/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.expression_tools' is absent from the `packages` configuration. 2024-02-12T20:17:43,174 !! 2024-02-12T20:17:43,175 ******************************************************************************** 2024-02-12T20:17:43,175 ############################ 2024-02-12T20:17:43,176 # Package would be ignored # 2024-02-12T20:17:43,176 ############################ 2024-02-12T20:17:43,176 Python recognizes 'galaxy.tools.bundled.expression_tools' as an importable package[^1], 2024-02-12T20:17:43,177 but it is absent from setuptools' `packages` configuration. 2024-02-12T20:17:43,178 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-12T20:17:43,178 package, please make sure that 'galaxy.tools.bundled.expression_tools' is explicitly added 2024-02-12T20:17:43,178 to the `packages` configuration field. 2024-02-12T20:17:43,179 Alternatively, you can also rely on setuptools' discovery methods 2024-02-12T20:17:43,179 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-12T20:17:43,180 instead of `find_packages(...)`/`find:`). 2024-02-12T20:17:43,181 You can read more about "package discovery" on setuptools documentation page: 2024-02-12T20:17:43,182 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-12T20:17:43,183 If you don't want 'galaxy.tools.bundled.expression_tools' to be distributed and are 2024-02-12T20:17:43,183 already explicitly excluding 'galaxy.tools.bundled.expression_tools' via 2024-02-12T20:17:43,184 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-12T20:17:43,184 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-12T20:17:43,185 combination with a more fine grained `package-data` configuration. 2024-02-12T20:17:43,186 You can read more about "package data files" on setuptools documentation page: 2024-02-12T20:17:43,187 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-12T20:17:43,188 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-12T20:17:43,189 even if it does not contain any `.py` files. 2024-02-12T20:17:43,189 On the other hand, currently there is no concept of package data 2024-02-12T20:17:43,190 directory, all directories are treated like packages. 2024-02-12T20:17:43,190 ******************************************************************************** 2024-02-12T20:17:43,191 !! 2024-02-12T20:17:43,192 check.warn(importable) 2024-02-12T20:17:43,193 /tmp/pip-build-env-3s9nsbkd/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.extract' is absent from the `packages` configuration. 2024-02-12T20:17:43,193 !! 2024-02-12T20:17:43,194 ******************************************************************************** 2024-02-12T20:17:43,195 ############################ 2024-02-12T20:17:43,195 # Package would be ignored # 2024-02-12T20:17:43,196 ############################ 2024-02-12T20:17:43,196 Python recognizes 'galaxy.tools.bundled.extract' as an importable package[^1], 2024-02-12T20:17:43,197 but it is absent from setuptools' `packages` configuration. 2024-02-12T20:17:43,198 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-12T20:17:43,198 package, please make sure that 'galaxy.tools.bundled.extract' is explicitly added 2024-02-12T20:17:43,199 to the `packages` configuration field. 2024-02-12T20:17:43,200 Alternatively, you can also rely on setuptools' discovery methods 2024-02-12T20:17:43,200 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-12T20:17:43,201 instead of `find_packages(...)`/`find:`). 2024-02-12T20:17:43,202 You can read more about "package discovery" on setuptools documentation page: 2024-02-12T20:17:43,202 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-12T20:17:43,203 If you don't want 'galaxy.tools.bundled.extract' to be distributed and are 2024-02-12T20:17:43,204 already explicitly excluding 'galaxy.tools.bundled.extract' via 2024-02-12T20:17:43,204 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-12T20:17:43,204 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-12T20:17:43,205 combination with a more fine grained `package-data` configuration. 2024-02-12T20:17:43,206 You can read more about "package data files" on setuptools documentation page: 2024-02-12T20:17:43,207 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-12T20:17:43,208 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-12T20:17:43,209 even if it does not contain any `.py` files. 2024-02-12T20:17:43,209 On the other hand, currently there is no concept of package data 2024-02-12T20:17:43,210 directory, all directories are treated like packages. 2024-02-12T20:17:43,210 ******************************************************************************** 2024-02-12T20:17:43,211 !! 2024-02-12T20:17:43,212 check.warn(importable) 2024-02-12T20:17:43,212 /tmp/pip-build-env-3s9nsbkd/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.filters' is absent from the `packages` configuration. 2024-02-12T20:17:43,213 !! 2024-02-12T20:17:43,214 ******************************************************************************** 2024-02-12T20:17:43,214 ############################ 2024-02-12T20:17:43,215 # Package would be ignored # 2024-02-12T20:17:43,215 ############################ 2024-02-12T20:17:43,216 Python recognizes 'galaxy.tools.bundled.filters' as an importable package[^1], 2024-02-12T20:17:43,217 but it is absent from setuptools' `packages` configuration. 2024-02-12T20:17:43,218 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-12T20:17:43,218 package, please make sure that 'galaxy.tools.bundled.filters' is explicitly added 2024-02-12T20:17:43,219 to the `packages` configuration field. 2024-02-12T20:17:43,220 Alternatively, you can also rely on setuptools' discovery methods 2024-02-12T20:17:43,221 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-12T20:17:43,221 instead of `find_packages(...)`/`find:`). 2024-02-12T20:17:43,222 You can read more about "package discovery" on setuptools documentation page: 2024-02-12T20:17:43,223 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-12T20:17:43,224 If you don't want 'galaxy.tools.bundled.filters' to be distributed and are 2024-02-12T20:17:43,225 already explicitly excluding 'galaxy.tools.bundled.filters' via 2024-02-12T20:17:43,225 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-12T20:17:43,226 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-12T20:17:43,226 combination with a more fine grained `package-data` configuration. 2024-02-12T20:17:43,227 You can read more about "package data files" on setuptools documentation page: 2024-02-12T20:17:43,229 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-12T20:17:43,230 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-12T20:17:43,230 even if it does not contain any `.py` files. 2024-02-12T20:17:43,230 On the other hand, currently there is no concept of package data 2024-02-12T20:17:43,231 directory, all directories are treated like packages. 2024-02-12T20:17:43,231 ******************************************************************************** 2024-02-12T20:17:43,232 !! 2024-02-12T20:17:43,233 check.warn(importable) 2024-02-12T20:17:43,233 /tmp/pip-build-env-3s9nsbkd/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.filters.gff' is absent from the `packages` configuration. 2024-02-12T20:17:43,234 !! 2024-02-12T20:17:43,234 ******************************************************************************** 2024-02-12T20:17:43,235 ############################ 2024-02-12T20:17:43,235 # Package would be ignored # 2024-02-12T20:17:43,236 ############################ 2024-02-12T20:17:43,236 Python recognizes 'galaxy.tools.bundled.filters.gff' as an importable package[^1], 2024-02-12T20:17:43,236 but it is absent from setuptools' `packages` configuration. 2024-02-12T20:17:43,237 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-12T20:17:43,238 package, please make sure that 'galaxy.tools.bundled.filters.gff' is explicitly added 2024-02-12T20:17:43,238 to the `packages` configuration field. 2024-02-12T20:17:43,239 Alternatively, you can also rely on setuptools' discovery methods 2024-02-12T20:17:43,240 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-12T20:17:43,240 instead of `find_packages(...)`/`find:`). 2024-02-12T20:17:43,242 You can read more about "package discovery" on setuptools documentation page: 2024-02-12T20:17:43,242 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-12T20:17:43,243 If you don't want 'galaxy.tools.bundled.filters.gff' to be distributed and are 2024-02-12T20:17:43,244 already explicitly excluding 'galaxy.tools.bundled.filters.gff' via 2024-02-12T20:17:43,244 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-12T20:17:43,245 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-12T20:17:43,245 combination with a more fine grained `package-data` configuration. 2024-02-12T20:17:43,246 You can read more about "package data files" on setuptools documentation page: 2024-02-12T20:17:43,247 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-12T20:17:43,249 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-12T20:17:43,249 even if it does not contain any `.py` files. 2024-02-12T20:17:43,250 On the other hand, currently there is no concept of package data 2024-02-12T20:17:43,250 directory, all directories are treated like packages. 2024-02-12T20:17:43,251 ******************************************************************************** 2024-02-12T20:17:43,252 !! 2024-02-12T20:17:43,252 check.warn(importable) 2024-02-12T20:17:43,252 /tmp/pip-build-env-3s9nsbkd/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.interactive' is absent from the `packages` configuration. 2024-02-12T20:17:43,253 !! 2024-02-12T20:17:43,254 ******************************************************************************** 2024-02-12T20:17:43,254 ############################ 2024-02-12T20:17:43,255 # Package would be ignored # 2024-02-12T20:17:43,256 ############################ 2024-02-12T20:17:43,256 Python recognizes 'galaxy.tools.bundled.interactive' as an importable package[^1], 2024-02-12T20:17:43,257 but it is absent from setuptools' `packages` configuration. 2024-02-12T20:17:43,257 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-12T20:17:43,258 package, please make sure that 'galaxy.tools.bundled.interactive' is explicitly added 2024-02-12T20:17:43,258 to the `packages` configuration field. 2024-02-12T20:17:43,259 Alternatively, you can also rely on setuptools' discovery methods 2024-02-12T20:17:43,260 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-12T20:17:43,260 instead of `find_packages(...)`/`find:`). 2024-02-12T20:17:43,261 You can read more about "package discovery" on setuptools documentation page: 2024-02-12T20:17:43,262 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-12T20:17:43,262 If you don't want 'galaxy.tools.bundled.interactive' to be distributed and are 2024-02-12T20:17:43,263 already explicitly excluding 'galaxy.tools.bundled.interactive' via 2024-02-12T20:17:43,263 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-12T20:17:43,264 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-12T20:17:43,264 combination with a more fine grained `package-data` configuration. 2024-02-12T20:17:43,265 You can read more about "package data files" on setuptools documentation page: 2024-02-12T20:17:43,266 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-12T20:17:43,267 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-12T20:17:43,268 even if it does not contain any `.py` files. 2024-02-12T20:17:43,268 On the other hand, currently there is no concept of package data 2024-02-12T20:17:43,269 directory, all directories are treated like packages. 2024-02-12T20:17:43,269 ******************************************************************************** 2024-02-12T20:17:43,270 !! 2024-02-12T20:17:43,271 check.warn(importable) 2024-02-12T20:17:43,271 /tmp/pip-build-env-3s9nsbkd/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.maf' is absent from the `packages` configuration. 2024-02-12T20:17:43,272 !! 2024-02-12T20:17:43,273 ******************************************************************************** 2024-02-12T20:17:43,273 ############################ 2024-02-12T20:17:43,274 # Package would be ignored # 2024-02-12T20:17:43,274 ############################ 2024-02-12T20:17:43,275 Python recognizes 'galaxy.tools.bundled.maf' as an importable package[^1], 2024-02-12T20:17:43,275 but it is absent from setuptools' `packages` configuration. 2024-02-12T20:17:43,276 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-12T20:17:43,277 package, please make sure that 'galaxy.tools.bundled.maf' is explicitly added 2024-02-12T20:17:43,277 to the `packages` configuration field. 2024-02-12T20:17:43,278 Alternatively, you can also rely on setuptools' discovery methods 2024-02-12T20:17:43,279 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-12T20:17:43,279 instead of `find_packages(...)`/`find:`). 2024-02-12T20:17:43,281 You can read more about "package discovery" on setuptools documentation page: 2024-02-12T20:17:43,282 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-12T20:17:43,283 If you don't want 'galaxy.tools.bundled.maf' to be distributed and are 2024-02-12T20:17:43,284 already explicitly excluding 'galaxy.tools.bundled.maf' via 2024-02-12T20:17:43,285 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-12T20:17:43,285 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-12T20:17:43,286 combination with a more fine grained `package-data` configuration. 2024-02-12T20:17:43,287 You can read more about "package data files" on setuptools documentation page: 2024-02-12T20:17:43,288 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-12T20:17:43,289 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-12T20:17:43,290 even if it does not contain any `.py` files. 2024-02-12T20:17:43,290 On the other hand, currently there is no concept of package data 2024-02-12T20:17:43,291 directory, all directories are treated like packages. 2024-02-12T20:17:43,291 ******************************************************************************** 2024-02-12T20:17:43,292 !! 2024-02-12T20:17:43,293 check.warn(importable) 2024-02-12T20:17:43,293 /tmp/pip-build-env-3s9nsbkd/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.meme' is absent from the `packages` configuration. 2024-02-12T20:17:43,294 !! 2024-02-12T20:17:43,295 ******************************************************************************** 2024-02-12T20:17:43,295 ############################ 2024-02-12T20:17:43,295 # Package would be ignored # 2024-02-12T20:17:43,296 ############################ 2024-02-12T20:17:43,296 Python recognizes 'galaxy.tools.bundled.meme' as an importable package[^1], 2024-02-12T20:17:43,297 but it is absent from setuptools' `packages` configuration. 2024-02-12T20:17:43,298 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-12T20:17:43,298 package, please make sure that 'galaxy.tools.bundled.meme' is explicitly added 2024-02-12T20:17:43,299 to the `packages` configuration field. 2024-02-12T20:17:43,300 Alternatively, you can also rely on setuptools' discovery methods 2024-02-12T20:17:43,300 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-12T20:17:43,301 instead of `find_packages(...)`/`find:`). 2024-02-12T20:17:43,302 You can read more about "package discovery" on setuptools documentation page: 2024-02-12T20:17:43,303 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-12T20:17:43,304 If you don't want 'galaxy.tools.bundled.meme' to be distributed and are 2024-02-12T20:17:43,305 already explicitly excluding 'galaxy.tools.bundled.meme' via 2024-02-12T20:17:43,306 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-12T20:17:43,306 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-12T20:17:43,307 combination with a more fine grained `package-data` configuration. 2024-02-12T20:17:43,308 You can read more about "package data files" on setuptools documentation page: 2024-02-12T20:17:43,309 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-12T20:17:43,310 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-12T20:17:43,311 even if it does not contain any `.py` files. 2024-02-12T20:17:43,312 On the other hand, currently there is no concept of package data 2024-02-12T20:17:43,312 directory, all directories are treated like packages. 2024-02-12T20:17:43,313 ******************************************************************************** 2024-02-12T20:17:43,314 !! 2024-02-12T20:17:43,314 check.warn(importable) 2024-02-12T20:17:43,315 /tmp/pip-build-env-3s9nsbkd/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.metag_tools' is absent from the `packages` configuration. 2024-02-12T20:17:43,315 !! 2024-02-12T20:17:43,316 ******************************************************************************** 2024-02-12T20:17:43,317 ############################ 2024-02-12T20:17:43,317 # Package would be ignored # 2024-02-12T20:17:43,318 ############################ 2024-02-12T20:17:43,318 Python recognizes 'galaxy.tools.bundled.metag_tools' as an importable package[^1], 2024-02-12T20:17:43,318 but it is absent from setuptools' `packages` configuration. 2024-02-12T20:17:43,319 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-12T20:17:43,320 package, please make sure that 'galaxy.tools.bundled.metag_tools' is explicitly added 2024-02-12T20:17:43,320 to the `packages` configuration field. 2024-02-12T20:17:43,321 Alternatively, you can also rely on setuptools' discovery methods 2024-02-12T20:17:43,321 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-12T20:17:43,322 instead of `find_packages(...)`/`find:`). 2024-02-12T20:17:43,323 You can read more about "package discovery" on setuptools documentation page: 2024-02-12T20:17:43,324 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-12T20:17:43,325 If you don't want 'galaxy.tools.bundled.metag_tools' to be distributed and are 2024-02-12T20:17:43,325 already explicitly excluding 'galaxy.tools.bundled.metag_tools' via 2024-02-12T20:17:43,326 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-12T20:17:43,326 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-12T20:17:43,327 combination with a more fine grained `package-data` configuration. 2024-02-12T20:17:43,328 You can read more about "package data files" on setuptools documentation page: 2024-02-12T20:17:43,328 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-12T20:17:43,330 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-12T20:17:43,330 even if it does not contain any `.py` files. 2024-02-12T20:17:43,331 On the other hand, currently there is no concept of package data 2024-02-12T20:17:43,332 directory, all directories are treated like packages. 2024-02-12T20:17:43,332 ******************************************************************************** 2024-02-12T20:17:43,333 !! 2024-02-12T20:17:43,334 check.warn(importable) 2024-02-12T20:17:43,334 /tmp/pip-build-env-3s9nsbkd/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.next_gen_conversion' is absent from the `packages` configuration. 2024-02-12T20:17:43,335 !! 2024-02-12T20:17:43,336 ******************************************************************************** 2024-02-12T20:17:43,336 ############################ 2024-02-12T20:17:43,337 # Package would be ignored # 2024-02-12T20:17:43,337 ############################ 2024-02-12T20:17:43,338 Python recognizes 'galaxy.tools.bundled.next_gen_conversion' as an importable package[^1], 2024-02-12T20:17:43,338 but it is absent from setuptools' `packages` configuration. 2024-02-12T20:17:43,339 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-12T20:17:43,340 package, please make sure that 'galaxy.tools.bundled.next_gen_conversion' is explicitly added 2024-02-12T20:17:43,340 to the `packages` configuration field. 2024-02-12T20:17:43,341 Alternatively, you can also rely on setuptools' discovery methods 2024-02-12T20:17:43,342 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-12T20:17:43,342 instead of `find_packages(...)`/`find:`). 2024-02-12T20:17:43,343 You can read more about "package discovery" on setuptools documentation page: 2024-02-12T20:17:43,344 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-12T20:17:43,345 If you don't want 'galaxy.tools.bundled.next_gen_conversion' to be distributed and are 2024-02-12T20:17:43,345 already explicitly excluding 'galaxy.tools.bundled.next_gen_conversion' via 2024-02-12T20:17:43,346 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-12T20:17:43,346 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-12T20:17:43,346 combination with a more fine grained `package-data` configuration. 2024-02-12T20:17:43,347 You can read more about "package data files" on setuptools documentation page: 2024-02-12T20:17:43,348 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-12T20:17:43,349 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-12T20:17:43,350 even if it does not contain any `.py` files. 2024-02-12T20:17:43,350 On the other hand, currently there is no concept of package data 2024-02-12T20:17:43,351 directory, all directories are treated like packages. 2024-02-12T20:17:43,351 ******************************************************************************** 2024-02-12T20:17:43,352 !! 2024-02-12T20:17:43,352 check.warn(importable) 2024-02-12T20:17:43,353 /tmp/pip-build-env-3s9nsbkd/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.ngs_simulation' is absent from the `packages` configuration. 2024-02-12T20:17:43,353 !! 2024-02-12T20:17:43,354 ******************************************************************************** 2024-02-12T20:17:43,355 ############################ 2024-02-12T20:17:43,355 # Package would be ignored # 2024-02-12T20:17:43,356 ############################ 2024-02-12T20:17:43,356 Python recognizes 'galaxy.tools.bundled.ngs_simulation' as an importable package[^1], 2024-02-12T20:17:43,357 but it is absent from setuptools' `packages` configuration. 2024-02-12T20:17:43,358 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-12T20:17:43,358 package, please make sure that 'galaxy.tools.bundled.ngs_simulation' is explicitly added 2024-02-12T20:17:43,359 to the `packages` configuration field. 2024-02-12T20:17:43,360 Alternatively, you can also rely on setuptools' discovery methods 2024-02-12T20:17:43,360 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-12T20:17:43,361 instead of `find_packages(...)`/`find:`). 2024-02-12T20:17:43,362 You can read more about "package discovery" on setuptools documentation page: 2024-02-12T20:17:43,363 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-12T20:17:43,363 If you don't want 'galaxy.tools.bundled.ngs_simulation' to be distributed and are 2024-02-12T20:17:43,364 already explicitly excluding 'galaxy.tools.bundled.ngs_simulation' via 2024-02-12T20:17:43,365 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-12T20:17:43,365 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-12T20:17:43,366 combination with a more fine grained `package-data` configuration. 2024-02-12T20:17:43,367 You can read more about "package data files" on setuptools documentation page: 2024-02-12T20:17:43,368 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-12T20:17:43,369 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-12T20:17:43,369 even if it does not contain any `.py` files. 2024-02-12T20:17:43,370 On the other hand, currently there is no concept of package data 2024-02-12T20:17:43,370 directory, all directories are treated like packages. 2024-02-12T20:17:43,371 ******************************************************************************** 2024-02-12T20:17:43,371 !! 2024-02-12T20:17:43,372 check.warn(importable) 2024-02-12T20:17:43,372 /tmp/pip-build-env-3s9nsbkd/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.phenotype_association' is absent from the `packages` configuration. 2024-02-12T20:17:43,373 !! 2024-02-12T20:17:43,373 ******************************************************************************** 2024-02-12T20:17:43,374 ############################ 2024-02-12T20:17:43,374 # Package would be ignored # 2024-02-12T20:17:43,375 ############################ 2024-02-12T20:17:43,375 Python recognizes 'galaxy.tools.bundled.phenotype_association' as an importable package[^1], 2024-02-12T20:17:43,376 but it is absent from setuptools' `packages` configuration. 2024-02-12T20:17:43,376 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-12T20:17:43,377 package, please make sure that 'galaxy.tools.bundled.phenotype_association' is explicitly added 2024-02-12T20:17:43,377 to the `packages` configuration field. 2024-02-12T20:17:43,378 Alternatively, you can also rely on setuptools' discovery methods 2024-02-12T20:17:43,379 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-12T20:17:43,379 instead of `find_packages(...)`/`find:`). 2024-02-12T20:17:43,380 You can read more about "package discovery" on setuptools documentation page: 2024-02-12T20:17:43,381 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-12T20:17:43,382 If you don't want 'galaxy.tools.bundled.phenotype_association' to be distributed and are 2024-02-12T20:17:43,382 already explicitly excluding 'galaxy.tools.bundled.phenotype_association' via 2024-02-12T20:17:43,383 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-12T20:17:43,383 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-12T20:17:43,384 combination with a more fine grained `package-data` configuration. 2024-02-12T20:17:43,385 You can read more about "package data files" on setuptools documentation page: 2024-02-12T20:17:43,386 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-12T20:17:43,387 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-12T20:17:43,388 even if it does not contain any `.py` files. 2024-02-12T20:17:43,388 On the other hand, currently there is no concept of package data 2024-02-12T20:17:43,389 directory, all directories are treated like packages. 2024-02-12T20:17:43,389 ******************************************************************************** 2024-02-12T20:17:43,390 !! 2024-02-12T20:17:43,391 check.warn(importable) 2024-02-12T20:17:43,391 /tmp/pip-build-env-3s9nsbkd/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.plotting' is absent from the `packages` configuration. 2024-02-12T20:17:43,392 !! 2024-02-12T20:17:43,393 ******************************************************************************** 2024-02-12T20:17:43,393 ############################ 2024-02-12T20:17:43,394 # Package would be ignored # 2024-02-12T20:17:43,395 ############################ 2024-02-12T20:17:43,395 Python recognizes 'galaxy.tools.bundled.plotting' as an importable package[^1], 2024-02-12T20:17:43,395 but it is absent from setuptools' `packages` configuration. 2024-02-12T20:17:43,396 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-12T20:17:43,396 package, please make sure that 'galaxy.tools.bundled.plotting' is explicitly added 2024-02-12T20:17:43,397 to the `packages` configuration field. 2024-02-12T20:17:43,398 Alternatively, you can also rely on setuptools' discovery methods 2024-02-12T20:17:43,398 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-12T20:17:43,399 instead of `find_packages(...)`/`find:`). 2024-02-12T20:17:43,399 You can read more about "package discovery" on setuptools documentation page: 2024-02-12T20:17:43,400 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-12T20:17:43,401 If you don't want 'galaxy.tools.bundled.plotting' to be distributed and are 2024-02-12T20:17:43,402 already explicitly excluding 'galaxy.tools.bundled.plotting' via 2024-02-12T20:17:43,402 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-12T20:17:43,403 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-12T20:17:43,403 combination with a more fine grained `package-data` configuration. 2024-02-12T20:17:43,404 You can read more about "package data files" on setuptools documentation page: 2024-02-12T20:17:43,405 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-12T20:17:43,406 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-12T20:17:43,407 even if it does not contain any `.py` files. 2024-02-12T20:17:43,407 On the other hand, currently there is no concept of package data 2024-02-12T20:17:43,408 directory, all directories are treated like packages. 2024-02-12T20:17:43,408 ******************************************************************************** 2024-02-12T20:17:43,409 !! 2024-02-12T20:17:43,410 check.warn(importable) 2024-02-12T20:17:43,410 /tmp/pip-build-env-3s9nsbkd/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.solid_tools' is absent from the `packages` configuration. 2024-02-12T20:17:43,411 !! 2024-02-12T20:17:43,412 ******************************************************************************** 2024-02-12T20:17:43,412 ############################ 2024-02-12T20:17:43,413 # Package would be ignored # 2024-02-12T20:17:43,413 ############################ 2024-02-12T20:17:43,414 Python recognizes 'galaxy.tools.bundled.solid_tools' as an importable package[^1], 2024-02-12T20:17:43,414 but it is absent from setuptools' `packages` configuration. 2024-02-12T20:17:43,415 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-12T20:17:43,416 package, please make sure that 'galaxy.tools.bundled.solid_tools' is explicitly added 2024-02-12T20:17:43,416 to the `packages` configuration field. 2024-02-12T20:17:43,417 Alternatively, you can also rely on setuptools' discovery methods 2024-02-12T20:17:43,418 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-12T20:17:43,418 instead of `find_packages(...)`/`find:`). 2024-02-12T20:17:43,419 You can read more about "package discovery" on setuptools documentation page: 2024-02-12T20:17:43,420 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-12T20:17:43,421 If you don't want 'galaxy.tools.bundled.solid_tools' to be distributed and are 2024-02-12T20:17:43,422 already explicitly excluding 'galaxy.tools.bundled.solid_tools' via 2024-02-12T20:17:43,423 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-12T20:17:43,423 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-12T20:17:43,423 combination with a more fine grained `package-data` configuration. 2024-02-12T20:17:43,424 You can read more about "package data files" on setuptools documentation page: 2024-02-12T20:17:43,425 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-12T20:17:43,426 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-12T20:17:43,427 even if it does not contain any `.py` files. 2024-02-12T20:17:43,427 On the other hand, currently there is no concept of package data 2024-02-12T20:17:43,428 directory, all directories are treated like packages. 2024-02-12T20:17:43,428 ******************************************************************************** 2024-02-12T20:17:43,429 !! 2024-02-12T20:17:43,430 check.warn(importable) 2024-02-12T20:17:43,430 /tmp/pip-build-env-3s9nsbkd/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.sr_assembly' is absent from the `packages` configuration. 2024-02-12T20:17:43,431 !! 2024-02-12T20:17:43,432 ******************************************************************************** 2024-02-12T20:17:43,432 ############################ 2024-02-12T20:17:43,432 # Package would be ignored # 2024-02-12T20:17:43,433 ############################ 2024-02-12T20:17:43,433 Python recognizes 'galaxy.tools.bundled.sr_assembly' as an importable package[^1], 2024-02-12T20:17:43,434 but it is absent from setuptools' `packages` configuration. 2024-02-12T20:17:43,435 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-12T20:17:43,435 package, please make sure that 'galaxy.tools.bundled.sr_assembly' is explicitly added 2024-02-12T20:17:43,436 to the `packages` configuration field. 2024-02-12T20:17:43,437 Alternatively, you can also rely on setuptools' discovery methods 2024-02-12T20:17:43,437 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-12T20:17:43,438 instead of `find_packages(...)`/`find:`). 2024-02-12T20:17:43,439 You can read more about "package discovery" on setuptools documentation page: 2024-02-12T20:17:43,440 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-12T20:17:43,441 If you don't want 'galaxy.tools.bundled.sr_assembly' to be distributed and are 2024-02-12T20:17:43,441 already explicitly excluding 'galaxy.tools.bundled.sr_assembly' via 2024-02-12T20:17:43,442 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-12T20:17:43,442 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-12T20:17:43,443 combination with a more fine grained `package-data` configuration. 2024-02-12T20:17:43,444 You can read more about "package data files" on setuptools documentation page: 2024-02-12T20:17:43,445 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-12T20:17:43,446 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-12T20:17:43,447 even if it does not contain any `.py` files. 2024-02-12T20:17:43,447 On the other hand, currently there is no concept of package data 2024-02-12T20:17:43,448 directory, all directories are treated like packages. 2024-02-12T20:17:43,448 ******************************************************************************** 2024-02-12T20:17:43,450 !! 2024-02-12T20:17:43,450 check.warn(importable) 2024-02-12T20:17:43,450 /tmp/pip-build-env-3s9nsbkd/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.sr_mapping' is absent from the `packages` configuration. 2024-02-12T20:17:43,451 !! 2024-02-12T20:17:43,451 ******************************************************************************** 2024-02-12T20:17:43,452 ############################ 2024-02-12T20:17:43,452 # Package would be ignored # 2024-02-12T20:17:43,453 ############################ 2024-02-12T20:17:43,453 Python recognizes 'galaxy.tools.bundled.sr_mapping' as an importable package[^1], 2024-02-12T20:17:43,454 but it is absent from setuptools' `packages` configuration. 2024-02-12T20:17:43,455 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-12T20:17:43,455 package, please make sure that 'galaxy.tools.bundled.sr_mapping' is explicitly added 2024-02-12T20:17:43,455 to the `packages` configuration field. 2024-02-12T20:17:43,456 Alternatively, you can also rely on setuptools' discovery methods 2024-02-12T20:17:43,457 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-12T20:17:43,457 instead of `find_packages(...)`/`find:`). 2024-02-12T20:17:43,458 You can read more about "package discovery" on setuptools documentation page: 2024-02-12T20:17:43,459 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-12T20:17:43,460 If you don't want 'galaxy.tools.bundled.sr_mapping' to be distributed and are 2024-02-12T20:17:43,460 already explicitly excluding 'galaxy.tools.bundled.sr_mapping' via 2024-02-12T20:17:43,460 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-12T20:17:43,461 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-12T20:17:43,461 combination with a more fine grained `package-data` configuration. 2024-02-12T20:17:43,462 You can read more about "package data files" on setuptools documentation page: 2024-02-12T20:17:43,463 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-12T20:17:43,465 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-12T20:17:43,465 even if it does not contain any `.py` files. 2024-02-12T20:17:43,466 On the other hand, currently there is no concept of package data 2024-02-12T20:17:43,466 directory, all directories are treated like packages. 2024-02-12T20:17:43,467 ******************************************************************************** 2024-02-12T20:17:43,468 !! 2024-02-12T20:17:43,468 check.warn(importable) 2024-02-12T20:17:43,469 /tmp/pip-build-env-3s9nsbkd/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.stats' is absent from the `packages` configuration. 2024-02-12T20:17:43,469 !! 2024-02-12T20:17:43,470 ******************************************************************************** 2024-02-12T20:17:43,471 ############################ 2024-02-12T20:17:43,471 # Package would be ignored # 2024-02-12T20:17:43,472 ############################ 2024-02-12T20:17:43,472 Python recognizes 'galaxy.tools.bundled.stats' as an importable package[^1], 2024-02-12T20:17:43,473 but it is absent from setuptools' `packages` configuration. 2024-02-12T20:17:43,474 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-12T20:17:43,474 package, please make sure that 'galaxy.tools.bundled.stats' is explicitly added 2024-02-12T20:17:43,475 to the `packages` configuration field. 2024-02-12T20:17:43,476 Alternatively, you can also rely on setuptools' discovery methods 2024-02-12T20:17:43,476 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-12T20:17:43,477 instead of `find_packages(...)`/`find:`). 2024-02-12T20:17:43,478 You can read more about "package discovery" on setuptools documentation page: 2024-02-12T20:17:43,478 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-12T20:17:43,479 If you don't want 'galaxy.tools.bundled.stats' to be distributed and are 2024-02-12T20:17:43,479 already explicitly excluding 'galaxy.tools.bundled.stats' via 2024-02-12T20:17:43,480 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-12T20:17:43,480 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-12T20:17:43,481 combination with a more fine grained `package-data` configuration. 2024-02-12T20:17:43,482 You can read more about "package data files" on setuptools documentation page: 2024-02-12T20:17:43,482 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-12T20:17:43,484 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-12T20:17:43,484 even if it does not contain any `.py` files. 2024-02-12T20:17:43,485 On the other hand, currently there is no concept of package data 2024-02-12T20:17:43,485 directory, all directories are treated like packages. 2024-02-12T20:17:43,486 ******************************************************************************** 2024-02-12T20:17:43,486 !! 2024-02-12T20:17:43,487 check.warn(importable) 2024-02-12T20:17:43,487 copying galaxy_ext/py.typed -> build/lib/galaxy_ext 2024-02-12T20:17:43,488 copying galaxy/py.typed -> build/lib/galaxy 2024-02-12T20:17:43,488 copying galaxy/managers/licenses.json -> build/lib/galaxy/managers 2024-02-12T20:17:43,489 copying galaxy/managers/markdown_export_base.css -> build/lib/galaxy/managers 2024-02-12T20:17:43,489 copying galaxy/dependencies/conditional-requirements.txt -> build/lib/galaxy/dependencies 2024-02-12T20:17:43,490 copying galaxy/dependencies/dev-requirements.txt -> build/lib/galaxy/dependencies 2024-02-12T20:17:43,490 copying galaxy/dependencies/lint-requirements.txt -> build/lib/galaxy/dependencies 2024-02-12T20:17:43,490 copying galaxy/dependencies/pinned-lint-requirements.txt -> build/lib/galaxy/dependencies 2024-02-12T20:17:43,491 copying galaxy/dependencies/pinned-requirements.txt -> build/lib/galaxy/dependencies 2024-02-12T20:17:43,491 copying galaxy/dependencies/pinned-typecheck-requirements.txt -> build/lib/galaxy/dependencies 2024-02-12T20:17:43,492 copying galaxy/dependencies/typecheck-requirements.txt -> build/lib/galaxy/dependencies 2024-02-12T20:17:43,492 copying galaxy/dependencies/update.sh -> build/lib/galaxy/dependencies 2024-02-12T20:17:43,493 copying galaxy/dependencies/update_lint_requirements.sh -> build/lib/galaxy/dependencies 2024-02-12T20:17:43,493 copying galaxy/tools/apply_rules.xml -> build/lib/galaxy/tools 2024-02-12T20:17:43,494 copying galaxy/tools/build_list.xml -> build/lib/galaxy/tools 2024-02-12T20:17:43,494 copying galaxy/tools/build_list_1.2.0.xml -> build/lib/galaxy/tools 2024-02-12T20:17:43,495 copying galaxy/tools/data_fetch.xml -> build/lib/galaxy/tools 2024-02-12T20:17:43,495 copying galaxy/tools/duplicate_file_to_collection.xml -> build/lib/galaxy/tools 2024-02-12T20:17:43,496 copying galaxy/tools/extract_dataset.xml -> build/lib/galaxy/tools 2024-02-12T20:17:43,496 copying galaxy/tools/filter_empty_collection.xml -> build/lib/galaxy/tools 2024-02-12T20:17:43,497 copying galaxy/tools/filter_failed_collection.xml -> build/lib/galaxy/tools 2024-02-12T20:17:43,497 copying galaxy/tools/filter_from_file.xml -> build/lib/galaxy/tools 2024-02-12T20:17:43,498 copying galaxy/tools/flatten_collection.xml -> build/lib/galaxy/tools 2024-02-12T20:17:43,498 copying galaxy/tools/merge_collection.xml -> build/lib/galaxy/tools 2024-02-12T20:17:43,499 copying galaxy/tools/relabel_from_file.xml -> build/lib/galaxy/tools 2024-02-12T20:17:43,500 copying galaxy/tools/sort_collection_list.xml -> build/lib/galaxy/tools 2024-02-12T20:17:43,500 copying galaxy/tools/tag_collection_from_file.xml -> build/lib/galaxy/tools 2024-02-12T20:17:43,500 copying galaxy/tools/unzip_collection.xml -> build/lib/galaxy/tools 2024-02-12T20:17:43,501 copying galaxy/tools/zip_collection.xml -> build/lib/galaxy/tools 2024-02-12T20:17:43,501 creating build/lib/galaxy/tools/bundled 2024-02-12T20:17:43,502 copying galaxy/tools/bundled/__init__.py -> build/lib/galaxy/tools/bundled 2024-02-12T20:17:43,502 creating build/lib/galaxy/tools/bundled/data_export 2024-02-12T20:17:43,502 copying galaxy/tools/bundled/data_export/export_remote.py -> build/lib/galaxy/tools/bundled/data_export 2024-02-12T20:17:43,503 copying galaxy/tools/bundled/data_export/export_remote.xml -> build/lib/galaxy/tools/bundled/data_export 2024-02-12T20:17:43,503 copying galaxy/tools/bundled/data_export/send.py -> build/lib/galaxy/tools/bundled/data_export 2024-02-12T20:17:43,504 copying galaxy/tools/bundled/data_export/send.xml -> build/lib/galaxy/tools/bundled/data_export 2024-02-12T20:17:43,504 creating build/lib/galaxy/tools/bundled/data_source 2024-02-12T20:17:43,505 copying galaxy/tools/bundled/data_source/__init__.py -> build/lib/galaxy/tools/bundled/data_source 2024-02-12T20:17:43,505 copying galaxy/tools/bundled/data_source/access_libraries.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-12T20:17:43,506 copying galaxy/tools/bundled/data_source/biomart.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-12T20:17:43,506 copying galaxy/tools/bundled/data_source/biomart_test.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-12T20:17:43,506 copying galaxy/tools/bundled/data_source/cbi_rice_mart.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-12T20:17:43,507 copying galaxy/tools/bundled/data_source/data_source.py -> build/lib/galaxy/tools/bundled/data_source 2024-02-12T20:17:43,507 copying galaxy/tools/bundled/data_source/ebi_sra.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-12T20:17:43,508 copying galaxy/tools/bundled/data_source/eupathdb.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-12T20:17:43,508 copying galaxy/tools/bundled/data_source/fly_modencode.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-12T20:17:43,509 copying galaxy/tools/bundled/data_source/flymine.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-12T20:17:43,509 copying galaxy/tools/bundled/data_source/flymine_test.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-12T20:17:43,510 copying galaxy/tools/bundled/data_source/genbank.py -> build/lib/galaxy/tools/bundled/data_source 2024-02-12T20:17:43,510 copying galaxy/tools/bundled/data_source/genbank.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-12T20:17:43,511 copying galaxy/tools/bundled/data_source/gramene_mart.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-12T20:17:43,511 copying galaxy/tools/bundled/data_source/hapmapmart.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-12T20:17:43,512 copying galaxy/tools/bundled/data_source/hbvar.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-12T20:17:43,512 copying galaxy/tools/bundled/data_source/import.py -> build/lib/galaxy/tools/bundled/data_source 2024-02-12T20:17:43,513 copying galaxy/tools/bundled/data_source/import.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-12T20:17:43,513 copying galaxy/tools/bundled/data_source/intermine.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-12T20:17:43,514 copying galaxy/tools/bundled/data_source/metabolicmine.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-12T20:17:43,514 copying galaxy/tools/bundled/data_source/microbial_import.py -> build/lib/galaxy/tools/bundled/data_source 2024-02-12T20:17:43,515 copying galaxy/tools/bundled/data_source/microbial_import.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-12T20:17:43,515 copying galaxy/tools/bundled/data_source/microbial_import_code.py -> build/lib/galaxy/tools/bundled/data_source 2024-02-12T20:17:43,516 copying galaxy/tools/bundled/data_source/modmine.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-12T20:17:43,516 copying galaxy/tools/bundled/data_source/mousemine.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-12T20:17:43,517 copying galaxy/tools/bundled/data_source/ncbi_datasets.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-12T20:17:43,517 copying galaxy/tools/bundled/data_source/ratmine.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-12T20:17:43,518 copying galaxy/tools/bundled/data_source/sra.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-12T20:17:43,518 copying galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-12T20:17:43,518 copying galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-12T20:17:43,519 copying galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-12T20:17:43,519 copying galaxy/tools/bundled/data_source/upload.py -> build/lib/galaxy/tools/bundled/data_source 2024-02-12T20:17:43,520 copying galaxy/tools/bundled/data_source/upload.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-12T20:17:43,520 copying galaxy/tools/bundled/data_source/worm_modencode.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-12T20:17:43,521 copying galaxy/tools/bundled/data_source/wormbase.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-12T20:17:43,521 copying galaxy/tools/bundled/data_source/wormbase_test.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-12T20:17:43,522 copying galaxy/tools/bundled/data_source/yeastmine.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-12T20:17:43,522 copying galaxy/tools/bundled/data_source/zebrafishmine.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-12T20:17:43,522 creating build/lib/galaxy/tools/bundled/expression_tools 2024-02-12T20:17:43,523 copying galaxy/tools/bundled/expression_tools/expression_macros.xml -> build/lib/galaxy/tools/bundled/expression_tools 2024-02-12T20:17:43,523 copying galaxy/tools/bundled/expression_tools/parse_values_from_file.xml -> build/lib/galaxy/tools/bundled/expression_tools 2024-02-12T20:17:43,524 copying galaxy/tools/bundled/expression_tools/pick_value.xml -> build/lib/galaxy/tools/bundled/expression_tools 2024-02-12T20:17:43,524 creating build/lib/galaxy/tools/bundled/extract 2024-02-12T20:17:43,525 copying galaxy/tools/bundled/extract/__init__.py -> build/lib/galaxy/tools/bundled/extract 2024-02-12T20:17:43,525 copying galaxy/tools/bundled/extract/extract_genomic_dna.py -> build/lib/galaxy/tools/bundled/extract 2024-02-12T20:17:43,526 copying galaxy/tools/bundled/extract/extract_genomic_dna.xml -> build/lib/galaxy/tools/bundled/extract 2024-02-12T20:17:43,526 copying galaxy/tools/bundled/extract/liftOver_wrapper.py -> build/lib/galaxy/tools/bundled/extract 2024-02-12T20:17:43,527 copying galaxy/tools/bundled/extract/liftOver_wrapper.xml -> build/lib/galaxy/tools/bundled/extract 2024-02-12T20:17:43,527 creating build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,527 copying galaxy/tools/bundled/filters/CreateInterval.pl -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,528 copying galaxy/tools/bundled/filters/CreateInterval.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,528 copying galaxy/tools/bundled/filters/__init__.py -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,529 copying galaxy/tools/bundled/filters/axt_to_concat_fasta.py -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,529 copying galaxy/tools/bundled/filters/axt_to_concat_fasta.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,530 copying galaxy/tools/bundled/filters/axt_to_fasta.py -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,531 copying galaxy/tools/bundled/filters/axt_to_fasta.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,531 copying galaxy/tools/bundled/filters/axt_to_lav.py -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,532 copying galaxy/tools/bundled/filters/axt_to_lav.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,532 copying galaxy/tools/bundled/filters/axt_to_lav_code.py -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,532 copying galaxy/tools/bundled/filters/bed2gff.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,533 copying galaxy/tools/bundled/filters/bed_to_bigbed.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,533 copying galaxy/tools/bundled/filters/bed_to_gff_converter.py -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,534 copying galaxy/tools/bundled/filters/catWrapper.py -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,534 copying galaxy/tools/bundled/filters/catWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,535 copying galaxy/tools/bundled/filters/changeCase.pl -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,535 copying galaxy/tools/bundled/filters/changeCase.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,536 copying galaxy/tools/bundled/filters/commWrapper.pl -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,536 copying galaxy/tools/bundled/filters/commWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,536 copying galaxy/tools/bundled/filters/compare.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,537 copying galaxy/tools/bundled/filters/condense_characters.pl -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,537 copying galaxy/tools/bundled/filters/condense_characters.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,538 copying galaxy/tools/bundled/filters/convert_characters.py -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,538 copying galaxy/tools/bundled/filters/convert_characters.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,539 copying galaxy/tools/bundled/filters/cutWrapper.pl -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,539 copying galaxy/tools/bundled/filters/cutWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,540 copying galaxy/tools/bundled/filters/fileGrep.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,540 copying galaxy/tools/bundled/filters/fixedValueColumn.pl -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,540 copying galaxy/tools/bundled/filters/fixedValueColumn.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,541 copying galaxy/tools/bundled/filters/gff2bed.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,541 copying galaxy/tools/bundled/filters/gff_to_bed_converter.py -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,542 copying galaxy/tools/bundled/filters/grep.py -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,542 copying galaxy/tools/bundled/filters/grep.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,543 copying galaxy/tools/bundled/filters/grep_1.0.1.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,543 copying galaxy/tools/bundled/filters/gtf2bedgraph.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,544 copying galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,544 copying galaxy/tools/bundled/filters/headWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,545 copying galaxy/tools/bundled/filters/join.py -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,545 copying galaxy/tools/bundled/filters/joinWrapper.py -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,546 copying galaxy/tools/bundled/filters/joiner.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,547 copying galaxy/tools/bundled/filters/joiner2.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,547 copying galaxy/tools/bundled/filters/lav_to_bed.py -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,547 copying galaxy/tools/bundled/filters/lav_to_bed.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,548 copying galaxy/tools/bundled/filters/lav_to_bed_code.py -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,548 copying galaxy/tools/bundled/filters/mergeCols.py -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,549 copying galaxy/tools/bundled/filters/mergeCols.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,550 copying galaxy/tools/bundled/filters/pasteWrapper.pl -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,552 copying galaxy/tools/bundled/filters/pasteWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,555 copying galaxy/tools/bundled/filters/random_lines_two_pass.py -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,557 copying galaxy/tools/bundled/filters/randomlines.py -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,559 copying galaxy/tools/bundled/filters/randomlines.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,561 copying galaxy/tools/bundled/filters/remove_beginning.pl -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,563 copying galaxy/tools/bundled/filters/remove_beginning.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,565 copying galaxy/tools/bundled/filters/secure_hash_message_digest.py -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,567 copying galaxy/tools/bundled/filters/secure_hash_message_digest.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,569 copying galaxy/tools/bundled/filters/sff_extract.py -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,572 copying galaxy/tools/bundled/filters/sff_extractor.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,574 copying galaxy/tools/bundled/filters/sorter.py -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,576 copying galaxy/tools/bundled/filters/sorter.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,578 copying galaxy/tools/bundled/filters/tailWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,580 copying galaxy/tools/bundled/filters/trimmer.py -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,583 copying galaxy/tools/bundled/filters/trimmer.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,585 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.py -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,587 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,589 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.py -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,592 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,594 copying galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.py -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,597 copying galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,599 copying galaxy/tools/bundled/filters/uniq.py -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,601 copying galaxy/tools/bundled/filters/uniq.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,603 copying galaxy/tools/bundled/filters/wc_gnu.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,605 copying galaxy/tools/bundled/filters/wig_to_bigwig.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,607 copying galaxy/tools/bundled/filters/wiggle_to_simple.py -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,609 copying galaxy/tools/bundled/filters/wiggle_to_simple.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-12T20:17:43,611 creating build/lib/galaxy/tools/bundled/filters/gff 2024-02-12T20:17:43,612 copying galaxy/tools/bundled/filters/gff/__init__.py -> build/lib/galaxy/tools/bundled/filters/gff 2024-02-12T20:17:43,614 copying galaxy/tools/bundled/filters/gff/extract_GFF_Features.py -> build/lib/galaxy/tools/bundled/filters/gff 2024-02-12T20:17:43,615 copying galaxy/tools/bundled/filters/gff/extract_GFF_Features.xml -> build/lib/galaxy/tools/bundled/filters/gff 2024-02-12T20:17:43,618 copying galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.py -> build/lib/galaxy/tools/bundled/filters/gff 2024-02-12T20:17:43,620 copying galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.xml -> build/lib/galaxy/tools/bundled/filters/gff 2024-02-12T20:17:43,622 copying galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.py -> build/lib/galaxy/tools/bundled/filters/gff 2024-02-12T20:17:43,624 copying galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.xml -> build/lib/galaxy/tools/bundled/filters/gff 2024-02-12T20:17:43,626 copying galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.py -> build/lib/galaxy/tools/bundled/filters/gff 2024-02-12T20:17:43,628 copying galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.xml -> build/lib/galaxy/tools/bundled/filters/gff 2024-02-12T20:17:43,631 creating build/lib/galaxy/tools/bundled/interactive 2024-02-12T20:17:43,631 copying galaxy/tools/bundled/interactive/default_notebook.ipynb -> build/lib/galaxy/tools/bundled/interactive 2024-02-12T20:17:43,634 copying galaxy/tools/bundled/interactive/interactivetool_askomics.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-12T20:17:43,636 copying galaxy/tools/bundled/interactive/interactivetool_bam_iobio.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-12T20:17:43,638 copying galaxy/tools/bundled/interactive/interactivetool_cellxgene.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-12T20:17:43,641 copying galaxy/tools/bundled/interactive/interactivetool_climate_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-12T20:17:43,643 copying galaxy/tools/bundled/interactive/interactivetool_ethercalc.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-12T20:17:43,645 copying galaxy/tools/bundled/interactive/interactivetool_geoexplorer.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-12T20:17:43,648 copying galaxy/tools/bundled/interactive/interactivetool_guacamole_desktop.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-12T20:17:43,650 copying galaxy/tools/bundled/interactive/interactivetool_hicbrowser.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-12T20:17:43,651 copying galaxy/tools/bundled/interactive/interactivetool_higlass.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-12T20:17:43,654 copying galaxy/tools/bundled/interactive/interactivetool_isee.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-12T20:17:43,657 copying galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-12T20:17:43,659 copying galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.0.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-12T20:17:43,662 copying galaxy/tools/bundled/interactive/interactivetool_metashark.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-12T20:17:43,663 copying galaxy/tools/bundled/interactive/interactivetool_mgnify_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-12T20:17:43,666 copying galaxy/tools/bundled/interactive/interactivetool_ml_jupyter_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-12T20:17:43,669 copying galaxy/tools/bundled/interactive/interactivetool_neo4j.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-12T20:17:43,671 copying galaxy/tools/bundled/interactive/interactivetool_openrefine.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-12T20:17:43,673 copying galaxy/tools/bundled/interactive/interactivetool_pangeo_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-12T20:17:43,676 copying galaxy/tools/bundled/interactive/interactivetool_panoply.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-12T20:17:43,678 copying galaxy/tools/bundled/interactive/interactivetool_paraview.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-12T20:17:43,680 copying galaxy/tools/bundled/interactive/interactivetool_pavian.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-12T20:17:43,682 copying galaxy/tools/bundled/interactive/interactivetool_phinch.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-12T20:17:43,687 copying galaxy/tools/bundled/interactive/interactivetool_pyiron.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-12T20:17:43,690 copying galaxy/tools/bundled/interactive/interactivetool_radiant.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-12T20:17:43,692 copying galaxy/tools/bundled/interactive/interactivetool_rstudio.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-12T20:17:43,694 copying galaxy/tools/bundled/interactive/interactivetool_simtext_app.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-12T20:17:43,697 copying galaxy/tools/bundled/interactive/interactivetool_vcf_iobio.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-12T20:17:43,699 copying galaxy/tools/bundled/interactive/interactivetool_vrm_editor.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-12T20:17:43,701 copying galaxy/tools/bundled/interactive/interactivetool_wallace.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-12T20:17:43,704 copying galaxy/tools/bundled/interactive/interactivetool_wilson.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-12T20:17:43,706 copying galaxy/tools/bundled/interactive/simtext_app.R -> build/lib/galaxy/tools/bundled/interactive 2024-02-12T20:17:43,713 creating build/lib/galaxy/tools/bundled/maf 2024-02-12T20:17:43,715 copying galaxy/tools/bundled/maf/__init__.py -> build/lib/galaxy/tools/bundled/maf 2024-02-12T20:17:43,717 copying galaxy/tools/bundled/maf/genebed_maf_to_fasta.xml -> build/lib/galaxy/tools/bundled/maf 2024-02-12T20:17:43,719 copying galaxy/tools/bundled/maf/interval2maf.py -> build/lib/galaxy/tools/bundled/maf 2024-02-12T20:17:43,722 copying galaxy/tools/bundled/maf/interval2maf.xml -> build/lib/galaxy/tools/bundled/maf 2024-02-12T20:17:43,725 copying galaxy/tools/bundled/maf/interval2maf_pairwise.xml -> build/lib/galaxy/tools/bundled/maf 2024-02-12T20:17:43,727 copying galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.py -> build/lib/galaxy/tools/bundled/maf 2024-02-12T20:17:43,730 copying galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.xml -> build/lib/galaxy/tools/bundled/maf 2024-02-12T20:17:43,733 copying galaxy/tools/bundled/maf/macros.xml -> build/lib/galaxy/tools/bundled/maf 2024-02-12T20:17:43,735 copying galaxy/tools/bundled/maf/maf_by_block_number.py -> build/lib/galaxy/tools/bundled/maf 2024-02-12T20:17:43,737 copying galaxy/tools/bundled/maf/maf_by_block_number.xml -> build/lib/galaxy/tools/bundled/maf 2024-02-12T20:17:43,740 copying galaxy/tools/bundled/maf/maf_filter.py -> build/lib/galaxy/tools/bundled/maf 2024-02-12T20:17:43,742 copying galaxy/tools/bundled/maf/maf_filter.xml -> build/lib/galaxy/tools/bundled/maf 2024-02-12T20:17:43,745 copying galaxy/tools/bundled/maf/maf_limit_size.py -> build/lib/galaxy/tools/bundled/maf 2024-02-12T20:17:43,747 copying galaxy/tools/bundled/maf/maf_limit_size.xml -> build/lib/galaxy/tools/bundled/maf 2024-02-12T20:17:43,750 copying galaxy/tools/bundled/maf/maf_limit_to_species.py -> build/lib/galaxy/tools/bundled/maf 2024-02-12T20:17:43,752 copying galaxy/tools/bundled/maf/maf_limit_to_species.xml -> build/lib/galaxy/tools/bundled/maf 2024-02-12T20:17:43,755 copying galaxy/tools/bundled/maf/maf_reverse_complement.py -> build/lib/galaxy/tools/bundled/maf 2024-02-12T20:17:43,757 copying galaxy/tools/bundled/maf/maf_reverse_complement.xml -> build/lib/galaxy/tools/bundled/maf 2024-02-12T20:17:43,759 copying galaxy/tools/bundled/maf/maf_split_by_species.py -> build/lib/galaxy/tools/bundled/maf 2024-02-12T20:17:43,762 copying galaxy/tools/bundled/maf/maf_split_by_species.xml -> build/lib/galaxy/tools/bundled/maf 2024-02-12T20:17:43,764 copying galaxy/tools/bundled/maf/maf_stats.py -> build/lib/galaxy/tools/bundled/maf 2024-02-12T20:17:43,767 copying galaxy/tools/bundled/maf/maf_stats.xml -> build/lib/galaxy/tools/bundled/maf 2024-02-12T20:17:43,769 copying galaxy/tools/bundled/maf/maf_thread_for_species.py -> build/lib/galaxy/tools/bundled/maf 2024-02-12T20:17:43,771 copying galaxy/tools/bundled/maf/maf_thread_for_species.xml -> build/lib/galaxy/tools/bundled/maf 2024-02-12T20:17:43,773 copying galaxy/tools/bundled/maf/maf_to_bed.py -> build/lib/galaxy/tools/bundled/maf 2024-02-12T20:17:43,774 copying galaxy/tools/bundled/maf/maf_to_bed.xml -> build/lib/galaxy/tools/bundled/maf 2024-02-12T20:17:43,777 copying galaxy/tools/bundled/maf/maf_to_bed_code.py -> build/lib/galaxy/tools/bundled/maf 2024-02-12T20:17:43,778 copying galaxy/tools/bundled/maf/maf_to_fasta.xml -> build/lib/galaxy/tools/bundled/maf 2024-02-12T20:17:43,780 copying galaxy/tools/bundled/maf/maf_to_fasta_concat.py -> build/lib/galaxy/tools/bundled/maf 2024-02-12T20:17:43,782 copying galaxy/tools/bundled/maf/maf_to_fasta_multiple_sets.py -> build/lib/galaxy/tools/bundled/maf 2024-02-12T20:17:43,784 copying galaxy/tools/bundled/maf/maf_to_interval.py -> build/lib/galaxy/tools/bundled/maf 2024-02-12T20:17:43,786 copying galaxy/tools/bundled/maf/maf_to_interval.xml -> build/lib/galaxy/tools/bundled/maf 2024-02-12T20:17:43,789 copying galaxy/tools/bundled/maf/vcf_to_maf_customtrack.py -> build/lib/galaxy/tools/bundled/maf 2024-02-12T20:17:43,791 copying galaxy/tools/bundled/maf/vcf_to_maf_customtrack.xml -> build/lib/galaxy/tools/bundled/maf 2024-02-12T20:17:43,794 creating build/lib/galaxy/tools/bundled/meme 2024-02-12T20:17:43,795 copying galaxy/tools/bundled/meme/__init__.py -> build/lib/galaxy/tools/bundled/meme 2024-02-12T20:17:43,797 copying galaxy/tools/bundled/meme/fimo.xml -> build/lib/galaxy/tools/bundled/meme 2024-02-12T20:17:43,800 copying galaxy/tools/bundled/meme/fimo_wrapper.py -> build/lib/galaxy/tools/bundled/meme 2024-02-12T20:17:43,803 copying galaxy/tools/bundled/meme/meme.xml -> build/lib/galaxy/tools/bundled/meme 2024-02-12T20:17:43,806 creating build/lib/galaxy/tools/bundled/metag_tools 2024-02-12T20:17:43,807 copying galaxy/tools/bundled/metag_tools/__init__.py -> build/lib/galaxy/tools/bundled/metag_tools 2024-02-12T20:17:43,809 copying galaxy/tools/bundled/metag_tools/blat_wrapper.py -> build/lib/galaxy/tools/bundled/metag_tools 2024-02-12T20:17:43,811 copying galaxy/tools/bundled/metag_tools/blat_wrapper.xml -> build/lib/galaxy/tools/bundled/metag_tools 2024-02-12T20:17:43,813 copying galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.py -> build/lib/galaxy/tools/bundled/metag_tools 2024-02-12T20:17:43,815 copying galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.xml -> build/lib/galaxy/tools/bundled/metag_tools 2024-02-12T20:17:43,818 copying galaxy/tools/bundled/metag_tools/shrimp_wrapper.py -> build/lib/galaxy/tools/bundled/metag_tools 2024-02-12T20:17:43,820 copying galaxy/tools/bundled/metag_tools/shrimp_wrapper.xml -> build/lib/galaxy/tools/bundled/metag_tools 2024-02-12T20:17:43,823 creating build/lib/galaxy/tools/bundled/next_gen_conversion 2024-02-12T20:17:43,824 copying galaxy/tools/bundled/next_gen_conversion/bwa_solid2fastq_modified.pl -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-02-12T20:17:43,826 copying galaxy/tools/bundled/next_gen_conversion/fastq_conversions.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-02-12T20:17:43,828 copying galaxy/tools/bundled/next_gen_conversion/fastq_conversions.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-02-12T20:17:43,830 copying galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-02-12T20:17:43,832 copying galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-02-12T20:17:43,835 copying galaxy/tools/bundled/next_gen_conversion/solid2fastq.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-02-12T20:17:43,837 copying galaxy/tools/bundled/next_gen_conversion/solid2fastq.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-02-12T20:17:43,839 copying galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-02-12T20:17:43,841 copying galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-02-12T20:17:43,843 creating build/lib/galaxy/tools/bundled/ngs_simulation 2024-02-12T20:17:43,844 copying galaxy/tools/bundled/ngs_simulation/__init__.py -> build/lib/galaxy/tools/bundled/ngs_simulation 2024-02-12T20:17:43,845 copying galaxy/tools/bundled/ngs_simulation/ngs_simulation.py -> build/lib/galaxy/tools/bundled/ngs_simulation 2024-02-12T20:17:43,848 copying galaxy/tools/bundled/ngs_simulation/ngs_simulation.xml -> build/lib/galaxy/tools/bundled/ngs_simulation 2024-02-12T20:17:43,851 creating build/lib/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:43,851 copying galaxy/tools/bundled/phenotype_association/BEAM2_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:43,853 copying galaxy/tools/bundled/phenotype_association/__init__.py -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:43,855 copying galaxy/tools/bundled/phenotype_association/beam.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:43,857 copying galaxy/tools/bundled/phenotype_association/gpass.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:43,859 copying galaxy/tools/bundled/phenotype_association/gpass.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:43,861 copying galaxy/tools/bundled/phenotype_association/ldtools.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:43,863 copying galaxy/tools/bundled/phenotype_association/ldtools_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:43,865 copying galaxy/tools/bundled/phenotype_association/linkToDavid.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:43,867 copying galaxy/tools/bundled/phenotype_association/linkToDavid.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:43,869 copying galaxy/tools/bundled/phenotype_association/linkToGProfile.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:43,871 copying galaxy/tools/bundled/phenotype_association/linkToGProfile.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:43,873 copying galaxy/tools/bundled/phenotype_association/lped_to_geno.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:43,875 copying galaxy/tools/bundled/phenotype_association/lps.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:43,878 copying galaxy/tools/bundled/phenotype_association/lps_tool_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:43,880 copying galaxy/tools/bundled/phenotype_association/master2gd_snp.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:43,882 copying galaxy/tools/bundled/phenotype_association/master2gd_snp.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:43,884 copying galaxy/tools/bundled/phenotype_association/master2pg.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:43,886 copying galaxy/tools/bundled/phenotype_association/master2pg.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:43,889 copying galaxy/tools/bundled/phenotype_association/mergeSnps.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:43,891 copying galaxy/tools/bundled/phenotype_association/pagetag.py -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:43,893 copying galaxy/tools/bundled/phenotype_association/pass.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:43,895 copying galaxy/tools/bundled/phenotype_association/pass_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:43,897 copying galaxy/tools/bundled/phenotype_association/senatag.py -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:43,899 copying galaxy/tools/bundled/phenotype_association/sift.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:43,901 copying galaxy/tools/bundled/phenotype_association/sift_variants_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:43,904 creating build/lib/galaxy/tools/bundled/plotting 2024-02-12T20:17:43,905 copying galaxy/tools/bundled/plotting/bar_chart.py -> build/lib/galaxy/tools/bundled/plotting 2024-02-12T20:17:43,907 copying galaxy/tools/bundled/plotting/bar_chart.xml -> build/lib/galaxy/tools/bundled/plotting 2024-02-12T20:17:43,909 copying galaxy/tools/bundled/plotting/boxplot.xml -> build/lib/galaxy/tools/bundled/plotting 2024-02-12T20:17:43,911 creating build/lib/galaxy/tools/bundled/solid_tools 2024-02-12T20:17:43,912 copying galaxy/tools/bundled/solid_tools/__init__.py -> build/lib/galaxy/tools/bundled/solid_tools 2024-02-12T20:17:43,914 copying galaxy/tools/bundled/solid_tools/maq_cs_wrapper.py -> build/lib/galaxy/tools/bundled/solid_tools 2024-02-12T20:17:43,916 copying galaxy/tools/bundled/solid_tools/maq_cs_wrapper.xml -> build/lib/galaxy/tools/bundled/solid_tools 2024-02-12T20:17:43,918 copying galaxy/tools/bundled/solid_tools/maq_cs_wrapper_code.py -> build/lib/galaxy/tools/bundled/solid_tools 2024-02-12T20:17:43,920 copying galaxy/tools/bundled/solid_tools/qualsolid_boxplot_graph.sh -> build/lib/galaxy/tools/bundled/solid_tools 2024-02-12T20:17:43,922 copying galaxy/tools/bundled/solid_tools/solid_qual_boxplot.xml -> build/lib/galaxy/tools/bundled/solid_tools 2024-02-12T20:17:43,924 copying galaxy/tools/bundled/solid_tools/solid_qual_stats.py -> build/lib/galaxy/tools/bundled/solid_tools 2024-02-12T20:17:43,927 copying galaxy/tools/bundled/solid_tools/solid_qual_stats.xml -> build/lib/galaxy/tools/bundled/solid_tools 2024-02-12T20:17:43,929 creating build/lib/galaxy/tools/bundled/sr_assembly 2024-02-12T20:17:43,930 copying galaxy/tools/bundled/sr_assembly/__init__.py -> build/lib/galaxy/tools/bundled/sr_assembly 2024-02-12T20:17:43,931 copying galaxy/tools/bundled/sr_assembly/velvetg.xml -> build/lib/galaxy/tools/bundled/sr_assembly 2024-02-12T20:17:43,934 copying galaxy/tools/bundled/sr_assembly/velvetg_wrapper.py -> build/lib/galaxy/tools/bundled/sr_assembly 2024-02-12T20:17:43,936 copying galaxy/tools/bundled/sr_assembly/velveth.xml -> build/lib/galaxy/tools/bundled/sr_assembly 2024-02-12T20:17:43,939 copying galaxy/tools/bundled/sr_assembly/velveth_wrapper.py -> build/lib/galaxy/tools/bundled/sr_assembly 2024-02-12T20:17:43,941 creating build/lib/galaxy/tools/bundled/sr_mapping 2024-02-12T20:17:43,941 copying galaxy/tools/bundled/sr_mapping/PerM.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2024-02-12T20:17:43,944 copying galaxy/tools/bundled/sr_mapping/__init__.py -> build/lib/galaxy/tools/bundled/sr_mapping 2024-02-12T20:17:43,946 copying galaxy/tools/bundled/sr_mapping/bfast_wrapper.py -> build/lib/galaxy/tools/bundled/sr_mapping 2024-02-12T20:17:43,949 copying galaxy/tools/bundled/sr_mapping/bfast_wrapper.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2024-02-12T20:17:43,952 copying galaxy/tools/bundled/sr_mapping/fastq_statistics.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2024-02-12T20:17:43,954 copying galaxy/tools/bundled/sr_mapping/mosaik.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2024-02-12T20:17:43,956 copying galaxy/tools/bundled/sr_mapping/srma_wrapper.py -> build/lib/galaxy/tools/bundled/sr_mapping 2024-02-12T20:17:43,959 copying galaxy/tools/bundled/sr_mapping/srma_wrapper.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2024-02-12T20:17:43,961 creating build/lib/galaxy/tools/bundled/stats 2024-02-12T20:17:43,962 copying galaxy/tools/bundled/stats/__init__.py -> build/lib/galaxy/tools/bundled/stats 2024-02-12T20:17:43,964 copying galaxy/tools/bundled/stats/aggregate_binned_scores_in_intervals.xml -> build/lib/galaxy/tools/bundled/stats 2024-02-12T20:17:43,967 copying galaxy/tools/bundled/stats/aggregate_scores_in_intervals.py -> build/lib/galaxy/tools/bundled/stats 2024-02-12T20:17:43,969 copying galaxy/tools/bundled/stats/filtering.py -> build/lib/galaxy/tools/bundled/stats 2024-02-12T20:17:43,971 copying galaxy/tools/bundled/stats/filtering.xml -> build/lib/galaxy/tools/bundled/stats 2024-02-12T20:17:43,974 copying galaxy/tools/bundled/stats/grouping.py -> build/lib/galaxy/tools/bundled/stats 2024-02-12T20:17:43,976 copying galaxy/tools/bundled/stats/grouping.xml -> build/lib/galaxy/tools/bundled/stats 2024-02-12T20:17:43,979 copying galaxy/tools/bundled/stats/gsummary.py -> build/lib/galaxy/tools/bundled/stats 2024-02-12T20:17:43,981 copying galaxy/tools/bundled/stats/gsummary.xml -> build/lib/galaxy/tools/bundled/stats 2024-02-12T20:17:43,983 copying galaxy/tools/bundled/stats/r_wrapper.sh -> build/lib/galaxy/tools/bundled/stats 2024-02-12T20:17:43,985 copying galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh -> build/lib/galaxy/jobs/runners/util/job_script 2024-02-12T20:17:43,987 copying galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh -> build/lib/galaxy/jobs/runners/util/job_script 2024-02-12T20:17:43,989 copying galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh -> build/lib/galaxy/jobs/runners/util/job_script 2024-02-12T20:17:43,991 copying galaxy/tools/imp_exp/exp_history_to_archive.xml -> build/lib/galaxy/tools/imp_exp 2024-02-12T20:17:43,993 copying galaxy/tools/imp_exp/exp_history_to_uri.xml -> build/lib/galaxy/tools/imp_exp 2024-02-12T20:17:43,995 copying galaxy/tools/imp_exp/imp_history_from_archive.xml -> build/lib/galaxy/tools/imp_exp 2024-02-12T20:17:43,997 copying galaxy/tools/expressions/cwlNodeEngine.js -> build/lib/galaxy/tools/expressions 2024-02-12T20:17:43,999 copying galaxy/workflow/resources/example.py.sample -> build/lib/galaxy/workflow/resources 2024-02-12T20:17:44,037 installing to build/bdist.linux-armv7l/wheel 2024-02-12T20:17:44,037 running install 2024-02-12T20:17:44,061 running install_lib 2024-02-12T20:17:44,068 creating build/bdist.linux-armv7l 2024-02-12T20:17:44,068 creating build/bdist.linux-armv7l/wheel 2024-02-12T20:17:44,070 creating build/bdist.linux-armv7l/wheel/tool_shed_client 2024-02-12T20:17:44,071 creating build/bdist.linux-armv7l/wheel/tool_shed_client/schema 2024-02-12T20:17:44,072 copying build/lib/tool_shed_client/schema/__init__.py -> build/bdist.linux-armv7l/wheel/tool_shed_client/schema 2024-02-12T20:17:44,075 copying build/lib/tool_shed_client/__init__.py -> build/bdist.linux-armv7l/wheel/tool_shed_client 2024-02-12T20:17:44,077 creating build/bdist.linux-armv7l/wheel/galaxy_ext 2024-02-12T20:17:44,078 creating build/bdist.linux-armv7l/wheel/galaxy_ext/metadata 2024-02-12T20:17:44,079 copying build/lib/galaxy_ext/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/metadata 2024-02-12T20:17:44,081 copying build/lib/galaxy_ext/metadata/set_metadata.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/metadata 2024-02-12T20:17:44,083 copying build/lib/galaxy_ext/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy_ext 2024-02-12T20:17:44,085 copying build/lib/galaxy_ext/py.typed -> build/bdist.linux-armv7l/wheel/galaxy_ext 2024-02-12T20:17:44,088 creating build/bdist.linux-armv7l/wheel/galaxy_ext/container_monitor 2024-02-12T20:17:44,089 copying build/lib/galaxy_ext/container_monitor/monitor.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/container_monitor 2024-02-12T20:17:44,091 copying build/lib/galaxy_ext/container_monitor/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/container_monitor 2024-02-12T20:17:44,093 creating build/bdist.linux-armv7l/wheel/galaxy_ext/expressions 2024-02-12T20:17:44,094 copying build/lib/galaxy_ext/expressions/handle_job.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/expressions 2024-02-12T20:17:44,096 copying build/lib/galaxy_ext/expressions/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/expressions 2024-02-12T20:17:44,098 creating build/bdist.linux-armv7l/wheel/galaxy 2024-02-12T20:17:44,100 creating build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,101 copying build/lib/galaxy/managers/jobs.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,104 copying build/lib/galaxy/managers/tasks.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,105 copying build/lib/galaxy/managers/citations.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,107 copying build/lib/galaxy/managers/cloudauthzs.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,110 copying build/lib/galaxy/managers/ratable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,112 copying build/lib/galaxy/managers/sharable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,114 copying build/lib/galaxy/managers/visualizations.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,116 copying build/lib/galaxy/managers/groups.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,118 copying build/lib/galaxy/managers/cloud.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,120 copying build/lib/galaxy/managers/markdown_parse.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,123 copying build/lib/galaxy/managers/tool_data.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,125 copying build/lib/galaxy/managers/base.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,129 copying build/lib/galaxy/managers/history_contents.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,132 copying build/lib/galaxy/managers/collections.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,134 copying build/lib/galaxy/managers/hdas.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,137 copying build/lib/galaxy/managers/configuration.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,139 copying build/lib/galaxy/managers/group_users.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,141 copying build/lib/galaxy/managers/libraries.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,143 copying build/lib/galaxy/managers/workflows.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,147 copying build/lib/galaxy/managers/annotatable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,149 copying build/lib/galaxy/managers/datasets.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,152 copying build/lib/galaxy/managers/tools.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,154 copying build/lib/galaxy/managers/model_stores.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,156 copying build/lib/galaxy/managers/interactivetool.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,159 copying build/lib/galaxy/managers/folders.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,161 copying build/lib/galaxy/managers/context.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,163 copying build/lib/galaxy/managers/licenses.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,165 copying build/lib/galaxy/managers/quotas.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,167 copying build/lib/galaxy/managers/pages.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,170 copying build/lib/galaxy/managers/hdcas.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,172 copying build/lib/galaxy/managers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,174 copying build/lib/galaxy/managers/metrics.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,176 copying build/lib/galaxy/managers/api_keys.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,178 copying build/lib/galaxy/managers/deletable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,180 copying build/lib/galaxy/managers/collections_util.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,182 copying build/lib/galaxy/managers/export_tracker.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,183 copying build/lib/galaxy/managers/session.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,185 copying build/lib/galaxy/managers/roles.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,187 copying build/lib/galaxy/managers/markdown_export_base.css -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,189 copying build/lib/galaxy/managers/display_applications.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,190 copying build/lib/galaxy/managers/executables.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,192 copying build/lib/galaxy/managers/group_roles.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,194 copying build/lib/galaxy/managers/markdown_util.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,197 copying build/lib/galaxy/managers/notification.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,199 copying build/lib/galaxy/managers/job_connections.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,201 copying build/lib/galaxy/managers/datatypes.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,203 copying build/lib/galaxy/managers/secured.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,206 copying build/lib/galaxy/managers/remote_files.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,208 copying build/lib/galaxy/managers/rbac_secured.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,210 copying build/lib/galaxy/managers/histories.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,214 copying build/lib/galaxy/managers/users.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,216 copying build/lib/galaxy/managers/licenses.json -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,222 copying build/lib/galaxy/managers/tags.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,223 copying build/lib/galaxy/managers/taggable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,226 copying build/lib/galaxy/managers/genomes.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,227 copying build/lib/galaxy/managers/library_datasets.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,230 copying build/lib/galaxy/managers/lddas.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-12T20:17:44,232 creating build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-02-12T20:17:44,233 copying build/lib/galaxy/dependencies/update_lint_requirements.sh -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-02-12T20:17:44,235 copying build/lib/galaxy/dependencies/pinned-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-02-12T20:17:44,238 copying build/lib/galaxy/dependencies/lint-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-02-12T20:17:44,239 copying build/lib/galaxy/dependencies/pinned-typecheck-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-02-12T20:17:44,241 copying build/lib/galaxy/dependencies/pinned-lint-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-02-12T20:17:44,243 copying build/lib/galaxy/dependencies/typecheck-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-02-12T20:17:44,244 copying build/lib/galaxy/dependencies/conditional-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-02-12T20:17:44,246 copying build/lib/galaxy/dependencies/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-02-12T20:17:44,248 copying build/lib/galaxy/dependencies/update.sh -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-02-12T20:17:44,250 copying build/lib/galaxy/dependencies/dev-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-02-12T20:17:44,253 creating build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-02-12T20:17:44,254 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-02-12T20:17:44,255 copying build/lib/galaxy/jobs/runners/tasks.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-02-12T20:17:44,258 copying build/lib/galaxy/jobs/runners/slurm.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-02-12T20:17:44,260 copying build/lib/galaxy/jobs/runners/local.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-02-12T20:17:44,262 copying build/lib/galaxy/jobs/runners/drmaa.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-02-12T20:17:44,265 copying build/lib/galaxy/jobs/runners/aws.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-02-12T20:17:44,268 copying build/lib/galaxy/jobs/runners/condor.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-02-12T20:17:44,270 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/state_handlers 2024-02-12T20:17:44,271 copying build/lib/galaxy/jobs/runners/state_handlers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/state_handlers 2024-02-12T20:17:44,273 copying build/lib/galaxy/jobs/runners/state_handlers/_safe_eval.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/state_handlers 2024-02-12T20:17:44,275 copying build/lib/galaxy/jobs/runners/state_handlers/resubmit.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/state_handlers 2024-02-12T20:17:44,277 copying build/lib/galaxy/jobs/runners/cli.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-02-12T20:17:44,280 copying build/lib/galaxy/jobs/runners/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-02-12T20:17:44,282 copying build/lib/galaxy/jobs/runners/kubernetes.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-02-12T20:17:44,285 copying build/lib/galaxy/jobs/runners/state_handler_factory.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-02-12T20:17:44,287 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-02-12T20:17:44,288 copying build/lib/galaxy/jobs/runners/util/external.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-02-12T20:17:44,291 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script 2024-02-12T20:17:44,292 copying build/lib/galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script 2024-02-12T20:17:44,293 copying build/lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script 2024-02-12T20:17:44,295 copying build/lib/galaxy/jobs/runners/util/job_script/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script 2024-02-12T20:17:44,297 copying build/lib/galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script 2024-02-12T20:17:44,299 copying build/lib/galaxy/jobs/runners/util/sudo.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-02-12T20:17:44,301 copying build/lib/galaxy/jobs/runners/util/fork_safe_write.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-02-12T20:17:44,302 copying build/lib/galaxy/jobs/runners/util/process_groups.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-02-12T20:17:44,305 copying build/lib/galaxy/jobs/runners/util/pykube_util.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-02-12T20:17:44,307 copying build/lib/galaxy/jobs/runners/util/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-02-12T20:17:44,309 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli 2024-02-12T20:17:44,310 copying build/lib/galaxy/jobs/runners/util/cli/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli 2024-02-12T20:17:44,312 copying build/lib/galaxy/jobs/runners/util/cli/factory.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli 2024-02-12T20:17:44,314 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2024-02-12T20:17:44,315 copying build/lib/galaxy/jobs/runners/util/cli/job/slurm.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2024-02-12T20:17:44,317 copying build/lib/galaxy/jobs/runners/util/cli/job/torque.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2024-02-12T20:17:44,319 copying build/lib/galaxy/jobs/runners/util/cli/job/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2024-02-12T20:17:44,321 copying build/lib/galaxy/jobs/runners/util/cli/job/lsf.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2024-02-12T20:17:44,323 copying build/lib/galaxy/jobs/runners/util/cli/job/pbs.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2024-02-12T20:17:44,324 copying build/lib/galaxy/jobs/runners/util/cli/job/slurm_torque.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2024-02-12T20:17:44,326 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/shell 2024-02-12T20:17:44,327 copying build/lib/galaxy/jobs/runners/util/cli/shell/local.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/shell 2024-02-12T20:17:44,329 copying build/lib/galaxy/jobs/runners/util/cli/shell/rsh.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/shell 2024-02-12T20:17:44,331 copying build/lib/galaxy/jobs/runners/util/cli/shell/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/shell 2024-02-12T20:17:44,333 copying build/lib/galaxy/jobs/runners/util/kill.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-02-12T20:17:44,334 copying build/lib/galaxy/jobs/runners/util/env.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-02-12T20:17:44,337 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/condor 2024-02-12T20:17:44,337 copying build/lib/galaxy/jobs/runners/util/condor/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/condor 2024-02-12T20:17:44,340 copying build/lib/galaxy/jobs/runners/pulsar.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-02-12T20:17:44,342 copying build/lib/galaxy/jobs/runners/pbs.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-02-12T20:17:44,345 copying build/lib/galaxy/jobs/runners/univa.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-02-12T20:17:44,348 copying build/lib/galaxy/jobs/runners/godocker.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-02-12T20:17:44,350 copying build/lib/galaxy/jobs/runners/chronos.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-02-12T20:17:44,353 copying build/lib/galaxy/jobs/rule_helper.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-02-12T20:17:44,355 copying build/lib/galaxy/jobs/dynamic_tool_destination.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-02-12T20:17:44,358 copying build/lib/galaxy/jobs/mapper.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-02-12T20:17:44,361 copying build/lib/galaxy/jobs/manager.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-02-12T20:17:44,362 copying build/lib/galaxy/jobs/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-02-12T20:17:44,366 copying build/lib/galaxy/jobs/handler.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-02-12T20:17:44,369 copying build/lib/galaxy/jobs/stock_rules.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-02-12T20:17:44,371 copying build/lib/galaxy/jobs/command_factory.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-02-12T20:17:44,374 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/splitters 2024-02-12T20:17:44,374 copying build/lib/galaxy/jobs/splitters/basic.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/splitters 2024-02-12T20:17:44,376 copying build/lib/galaxy/jobs/splitters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/splitters 2024-02-12T20:17:44,378 copying build/lib/galaxy/jobs/splitters/multi.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/splitters 2024-02-12T20:17:44,380 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/rules 2024-02-12T20:17:44,381 copying build/lib/galaxy/jobs/rules/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/rules 2024-02-12T20:17:44,382 copying build/lib/galaxy/queue_worker.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-02-12T20:17:44,385 creating build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils 2024-02-12T20:17:44,386 copying build/lib/galaxy/app_unittest_utils/galaxy_mock.py -> build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils 2024-02-12T20:17:44,388 copying build/lib/galaxy/app_unittest_utils/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils 2024-02-12T20:17:44,390 copying build/lib/galaxy/app_unittest_utils/tools_support.py -> build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils 2024-02-12T20:17:44,392 copying build/lib/galaxy/structured_app.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-02-12T20:17:44,394 creating build/bdist.linux-armv7l/wheel/galaxy/actions 2024-02-12T20:17:44,395 copying build/lib/galaxy/actions/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/actions 2024-02-12T20:17:44,397 copying build/lib/galaxy/actions/library.py -> build/bdist.linux-armv7l/wheel/galaxy/actions 2024-02-12T20:17:44,399 creating build/bdist.linux-armv7l/wheel/galaxy/visualization 2024-02-12T20:17:44,401 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2024-02-12T20:17:44,402 copying build/lib/galaxy/visualization/plugins/plugin.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2024-02-12T20:17:44,404 copying build/lib/galaxy/visualization/plugins/registry.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2024-02-12T20:17:44,407 copying build/lib/galaxy/visualization/plugins/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2024-02-12T20:17:44,408 copying build/lib/galaxy/visualization/plugins/resource_parser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2024-02-12T20:17:44,410 copying build/lib/galaxy/visualization/plugins/config_parser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2024-02-12T20:17:44,413 copying build/lib/galaxy/visualization/plugins/utils.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2024-02-12T20:17:44,415 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/genome 2024-02-12T20:17:44,416 copying build/lib/galaxy/visualization/genome/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/genome 2024-02-12T20:17:44,417 copying build/lib/galaxy/visualization/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization 2024-02-12T20:17:44,419 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers 2024-02-12T20:17:44,420 copying build/lib/galaxy/visualization/data_providers/basic.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers 2024-02-12T20:17:44,422 copying build/lib/galaxy/visualization/data_providers/genome.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers 2024-02-12T20:17:44,426 copying build/lib/galaxy/visualization/data_providers/registry.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers 2024-02-12T20:17:44,428 copying build/lib/galaxy/visualization/data_providers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers 2024-02-12T20:17:44,429 copying build/lib/galaxy/visualization/data_providers/cigar.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers 2024-02-12T20:17:44,431 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz 2024-02-12T20:17:44,432 copying build/lib/galaxy/visualization/data_providers/phyloviz/nexusparser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz 2024-02-12T20:17:44,434 copying build/lib/galaxy/visualization/data_providers/phyloviz/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz 2024-02-12T20:17:44,436 copying build/lib/galaxy/visualization/data_providers/phyloviz/newickparser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz 2024-02-12T20:17:44,438 copying build/lib/galaxy/visualization/data_providers/phyloviz/baseparser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz 2024-02-12T20:17:44,440 copying build/lib/galaxy/visualization/data_providers/phyloviz/phyloxmlparser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz 2024-02-12T20:17:44,443 copying build/lib/galaxy/visualization/genomes.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization 2024-02-12T20:17:44,445 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/tracks 2024-02-12T20:17:44,446 copying build/lib/galaxy/visualization/tracks/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/tracks 2024-02-12T20:17:44,448 copying build/lib/galaxy/app.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-02-12T20:17:44,451 copying build/lib/galaxy/main_config.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-02-12T20:17:44,454 creating build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-12T20:17:44,455 copying build/lib/galaxy/tools/flatten_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-12T20:17:44,457 copying build/lib/galaxy/tools/biotools.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-12T20:17:44,458 copying build/lib/galaxy/tools/filter_empty_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-12T20:17:44,461 creating build/bdist.linux-armv7l/wheel/galaxy/tools/filters 2024-02-12T20:17:44,462 copying build/lib/galaxy/tools/filters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/filters 2024-02-12T20:17:44,463 copying build/lib/galaxy/tools/test.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-12T20:17:44,466 copying build/lib/galaxy/tools/zip_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-12T20:17:44,468 copying build/lib/galaxy/tools/execute.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-12T20:17:44,471 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled 2024-02-12T20:17:44,473 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,475 copying build/lib/galaxy/tools/bundled/filters/gff2bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,477 copying build/lib/galaxy/tools/bundled/filters/changeCase.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,479 copying build/lib/galaxy/tools/bundled/filters/gtf2bedgraph.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,481 copying build/lib/galaxy/tools/bundled/filters/pasteWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,483 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,486 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,487 copying build/lib/galaxy/tools/bundled/filters/join.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,490 copying build/lib/galaxy/tools/bundled/filters/joinWrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,492 copying build/lib/galaxy/tools/bundled/filters/sorter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,494 copying build/lib/galaxy/tools/bundled/filters/remove_beginning.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,496 copying build/lib/galaxy/tools/bundled/filters/fixedValueColumn.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,498 copying build/lib/galaxy/tools/bundled/filters/changeCase.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,500 copying build/lib/galaxy/tools/bundled/filters/grep.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,502 copying build/lib/galaxy/tools/bundled/filters/pasteWrapper.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,504 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,506 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,509 copying build/lib/galaxy/tools/bundled/filters/randomlines.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,511 copying build/lib/galaxy/tools/bundled/filters/lav_to_bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,513 copying build/lib/galaxy/tools/bundled/filters/fileGrep.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,515 copying build/lib/galaxy/tools/bundled/filters/lav_to_bed.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,517 copying build/lib/galaxy/tools/bundled/filters/condense_characters.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,518 copying build/lib/galaxy/tools/bundled/filters/uniq.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,521 copying build/lib/galaxy/tools/bundled/filters/sff_extractor.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,522 copying build/lib/galaxy/tools/bundled/filters/trimmer.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,525 copying build/lib/galaxy/tools/bundled/filters/commWrapper.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,527 copying build/lib/galaxy/tools/bundled/filters/joiner.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,529 copying build/lib/galaxy/tools/bundled/filters/axt_to_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,531 copying build/lib/galaxy/tools/bundled/filters/condense_characters.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,533 copying build/lib/galaxy/tools/bundled/filters/lav_to_bed_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,535 copying build/lib/galaxy/tools/bundled/filters/axt_to_lav.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,538 copying build/lib/galaxy/tools/bundled/filters/convert_characters.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,540 copying build/lib/galaxy/tools/bundled/filters/trimmer.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,542 copying build/lib/galaxy/tools/bundled/filters/cutWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,544 copying build/lib/galaxy/tools/bundled/filters/wc_gnu.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,546 copying build/lib/galaxy/tools/bundled/filters/commWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,548 copying build/lib/galaxy/tools/bundled/filters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,549 copying build/lib/galaxy/tools/bundled/filters/axt_to_concat_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,551 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,552 copying build/lib/galaxy/tools/bundled/filters/gff_to_bed_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,554 copying build/lib/galaxy/tools/bundled/filters/mergeCols.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,556 copying build/lib/galaxy/tools/bundled/filters/randomlines.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,558 copying build/lib/galaxy/tools/bundled/filters/tailWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,560 copying build/lib/galaxy/tools/bundled/filters/axt_to_concat_fasta.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,562 copying build/lib/galaxy/tools/bundled/filters/headWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,563 copying build/lib/galaxy/tools/bundled/filters/bed2gff.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,566 copying build/lib/galaxy/tools/bundled/filters/bed_to_gff_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,568 copying build/lib/galaxy/tools/bundled/filters/CreateInterval.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,570 copying build/lib/galaxy/tools/bundled/filters/secure_hash_message_digest.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,572 copying build/lib/galaxy/tools/bundled/filters/fixedValueColumn.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,573 copying build/lib/galaxy/tools/bundled/filters/compare.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,575 copying build/lib/galaxy/tools/bundled/filters/wiggle_to_simple.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,577 copying build/lib/galaxy/tools/bundled/filters/joiner2.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,579 copying build/lib/galaxy/tools/bundled/filters/grep_1.0.1.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,580 copying build/lib/galaxy/tools/bundled/filters/sff_extract.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,583 copying build/lib/galaxy/tools/bundled/filters/axt_to_lav_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,585 copying build/lib/galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,587 copying build/lib/galaxy/tools/bundled/filters/bed_to_bigbed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,589 copying build/lib/galaxy/tools/bundled/filters/convert_characters.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,590 copying build/lib/galaxy/tools/bundled/filters/mergeCols.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,592 copying build/lib/galaxy/tools/bundled/filters/wig_to_bigwig.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,594 copying build/lib/galaxy/tools/bundled/filters/remove_beginning.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,595 copying build/lib/galaxy/tools/bundled/filters/catWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,598 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-02-12T20:17:44,598 copying build/lib/galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-02-12T20:17:44,600 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-02-12T20:17:44,602 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-02-12T20:17:44,604 copying build/lib/galaxy/tools/bundled/filters/gff/extract_GFF_Features.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-02-12T20:17:44,607 copying build/lib/galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-02-12T20:17:44,608 copying build/lib/galaxy/tools/bundled/filters/gff/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-02-12T20:17:44,610 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-02-12T20:17:44,612 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-02-12T20:17:44,614 copying build/lib/galaxy/tools/bundled/filters/gff/extract_GFF_Features.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-02-12T20:17:44,616 copying build/lib/galaxy/tools/bundled/filters/wiggle_to_simple.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,618 copying build/lib/galaxy/tools/bundled/filters/secure_hash_message_digest.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,619 copying build/lib/galaxy/tools/bundled/filters/cutWrapper.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,621 copying build/lib/galaxy/tools/bundled/filters/catWrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,623 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,625 copying build/lib/galaxy/tools/bundled/filters/axt_to_fasta.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,627 copying build/lib/galaxy/tools/bundled/filters/axt_to_lav.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,629 copying build/lib/galaxy/tools/bundled/filters/sorter.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,631 copying build/lib/galaxy/tools/bundled/filters/CreateInterval.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,633 copying build/lib/galaxy/tools/bundled/filters/random_lines_two_pass.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,635 copying build/lib/galaxy/tools/bundled/filters/grep.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,637 copying build/lib/galaxy/tools/bundled/filters/uniq.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-12T20:17:44,640 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-02-12T20:17:44,640 copying build/lib/galaxy/tools/bundled/sr_mapping/fastq_statistics.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-02-12T20:17:44,643 copying build/lib/galaxy/tools/bundled/sr_mapping/PerM.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-02-12T20:17:44,645 copying build/lib/galaxy/tools/bundled/sr_mapping/bfast_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-02-12T20:17:44,647 copying build/lib/galaxy/tools/bundled/sr_mapping/srma_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-02-12T20:17:44,650 copying build/lib/galaxy/tools/bundled/sr_mapping/bfast_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-02-12T20:17:44,652 copying build/lib/galaxy/tools/bundled/sr_mapping/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-02-12T20:17:44,653 copying build/lib/galaxy/tools/bundled/sr_mapping/srma_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-02-12T20:17:44,656 copying build/lib/galaxy/tools/bundled/sr_mapping/mosaik.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-02-12T20:17:44,659 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-02-12T20:17:44,660 copying build/lib/galaxy/tools/bundled/stats/aggregate_binned_scores_in_intervals.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-02-12T20:17:44,662 copying build/lib/galaxy/tools/bundled/stats/grouping.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-02-12T20:17:44,664 copying build/lib/galaxy/tools/bundled/stats/filtering.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-02-12T20:17:44,666 copying build/lib/galaxy/tools/bundled/stats/gsummary.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-02-12T20:17:44,668 copying build/lib/galaxy/tools/bundled/stats/filtering.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-02-12T20:17:44,671 copying build/lib/galaxy/tools/bundled/stats/r_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-02-12T20:17:44,672 copying build/lib/galaxy/tools/bundled/stats/gsummary.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-02-12T20:17:44,674 copying build/lib/galaxy/tools/bundled/stats/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-02-12T20:17:44,676 copying build/lib/galaxy/tools/bundled/stats/aggregate_scores_in_intervals.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-02-12T20:17:44,678 copying build/lib/galaxy/tools/bundled/stats/grouping.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-02-12T20:17:44,681 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:44,682 copying build/lib/galaxy/tools/bundled/phenotype_association/gpass.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:44,684 copying build/lib/galaxy/tools/bundled/phenotype_association/lped_to_geno.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:44,686 copying build/lib/galaxy/tools/bundled/phenotype_association/lps.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:44,689 copying build/lib/galaxy/tools/bundled/phenotype_association/pass_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:44,691 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToDavid.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:44,692 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToGProfile.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:44,694 copying build/lib/galaxy/tools/bundled/phenotype_association/beam.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:44,696 copying build/lib/galaxy/tools/bundled/phenotype_association/sift.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:44,699 copying build/lib/galaxy/tools/bundled/phenotype_association/mergeSnps.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:44,700 copying build/lib/galaxy/tools/bundled/phenotype_association/master2pg.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:44,702 copying build/lib/galaxy/tools/bundled/phenotype_association/sift_variants_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:44,704 copying build/lib/galaxy/tools/bundled/phenotype_association/ldtools.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:44,706 copying build/lib/galaxy/tools/bundled/phenotype_association/BEAM2_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:44,708 copying build/lib/galaxy/tools/bundled/phenotype_association/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:44,710 copying build/lib/galaxy/tools/bundled/phenotype_association/pass.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:44,712 copying build/lib/galaxy/tools/bundled/phenotype_association/master2gd_snp.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:44,714 copying build/lib/galaxy/tools/bundled/phenotype_association/senatag.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:44,716 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToDavid.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:44,718 copying build/lib/galaxy/tools/bundled/phenotype_association/master2gd_snp.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:44,720 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToGProfile.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:44,721 copying build/lib/galaxy/tools/bundled/phenotype_association/master2pg.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:44,723 copying build/lib/galaxy/tools/bundled/phenotype_association/gpass.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:44,725 copying build/lib/galaxy/tools/bundled/phenotype_association/pagetag.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:44,727 copying build/lib/galaxy/tools/bundled/phenotype_association/lps_tool_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:44,729 copying build/lib/galaxy/tools/bundled/phenotype_association/ldtools_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-12T20:17:44,731 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/expression_tools 2024-02-12T20:17:44,732 copying build/lib/galaxy/tools/bundled/expression_tools/expression_macros.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/expression_tools 2024-02-12T20:17:44,734 copying build/lib/galaxy/tools/bundled/expression_tools/parse_values_from_file.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/expression_tools 2024-02-12T20:17:44,736 copying build/lib/galaxy/tools/bundled/expression_tools/pick_value.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/expression_tools 2024-02-12T20:17:44,739 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme 2024-02-12T20:17:44,740 copying build/lib/galaxy/tools/bundled/meme/fimo.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme 2024-02-12T20:17:44,742 copying build/lib/galaxy/tools/bundled/meme/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme 2024-02-12T20:17:44,744 copying build/lib/galaxy/tools/bundled/meme/meme.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme 2024-02-12T20:17:44,746 copying build/lib/galaxy/tools/bundled/meme/fimo_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme 2024-02-12T20:17:44,748 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-12T20:17:44,749 copying build/lib/galaxy/tools/bundled/data_source/microbial_import_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-12T20:17:44,752 copying build/lib/galaxy/tools/bundled/data_source/modmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-12T20:17:44,753 copying build/lib/galaxy/tools/bundled/data_source/microbial_import.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-12T20:17:44,755 copying build/lib/galaxy/tools/bundled/data_source/genbank.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-12T20:17:44,757 copying build/lib/galaxy/tools/bundled/data_source/metabolicmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-12T20:17:44,759 copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-12T20:17:44,761 copying build/lib/galaxy/tools/bundled/data_source/wormbase_test.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-12T20:17:44,762 copying build/lib/galaxy/tools/bundled/data_source/intermine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-12T20:17:44,764 copying build/lib/galaxy/tools/bundled/data_source/cbi_rice_mart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-12T20:17:44,766 copying build/lib/galaxy/tools/bundled/data_source/wormbase.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-12T20:17:44,768 copying build/lib/galaxy/tools/bundled/data_source/ncbi_datasets.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-12T20:17:44,769 copying build/lib/galaxy/tools/bundled/data_source/mousemine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-12T20:17:44,771 copying build/lib/galaxy/tools/bundled/data_source/hbvar.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-12T20:17:44,773 copying build/lib/galaxy/tools/bundled/data_source/yeastmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-12T20:17:44,775 copying build/lib/galaxy/tools/bundled/data_source/hapmapmart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-12T20:17:44,777 copying build/lib/galaxy/tools/bundled/data_source/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-12T20:17:44,778 copying build/lib/galaxy/tools/bundled/data_source/microbial_import.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-12T20:17:44,780 copying build/lib/galaxy/tools/bundled/data_source/biomart_test.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-12T20:17:44,782 copying build/lib/galaxy/tools/bundled/data_source/worm_modencode.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-12T20:17:44,784 copying build/lib/galaxy/tools/bundled/data_source/fly_modencode.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-12T20:17:44,786 copying build/lib/galaxy/tools/bundled/data_source/ebi_sra.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-12T20:17:44,787 copying build/lib/galaxy/tools/bundled/data_source/data_source.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-12T20:17:44,789 copying build/lib/galaxy/tools/bundled/data_source/import.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-12T20:17:44,791 copying build/lib/galaxy/tools/bundled/data_source/import.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-12T20:17:44,792 copying build/lib/galaxy/tools/bundled/data_source/eupathdb.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-12T20:17:44,794 copying build/lib/galaxy/tools/bundled/data_source/genbank.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-12T20:17:44,796 copying build/lib/galaxy/tools/bundled/data_source/gramene_mart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-12T20:17:44,797 copying build/lib/galaxy/tools/bundled/data_source/upload.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-12T20:17:44,799 copying build/lib/galaxy/tools/bundled/data_source/upload.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-12T20:17:44,802 copying build/lib/galaxy/tools/bundled/data_source/ratmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-12T20:17:44,803 copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-12T20:17:44,805 copying build/lib/galaxy/tools/bundled/data_source/access_libraries.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-12T20:17:44,807 copying build/lib/galaxy/tools/bundled/data_source/zebrafishmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-12T20:17:44,809 copying build/lib/galaxy/tools/bundled/data_source/biomart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-12T20:17:44,811 copying build/lib/galaxy/tools/bundled/data_source/flymine_test.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-12T20:17:44,812 copying build/lib/galaxy/tools/bundled/data_source/flymine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-12T20:17:44,814 copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-12T20:17:44,816 copying build/lib/galaxy/tools/bundled/data_source/sra.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-12T20:17:44,818 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract 2024-02-12T20:17:44,819 copying build/lib/galaxy/tools/bundled/extract/liftOver_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract 2024-02-12T20:17:44,821 copying build/lib/galaxy/tools/bundled/extract/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract 2024-02-12T20:17:44,823 copying build/lib/galaxy/tools/bundled/extract/liftOver_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract 2024-02-12T20:17:44,825 copying build/lib/galaxy/tools/bundled/extract/extract_genomic_dna.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract 2024-02-12T20:17:44,827 copying build/lib/galaxy/tools/bundled/extract/extract_genomic_dna.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract 2024-02-12T20:17:44,830 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-02-12T20:17:44,831 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid2fastq.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-02-12T20:17:44,833 copying build/lib/galaxy/tools/bundled/next_gen_conversion/bwa_solid2fastq_modified.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-02-12T20:17:44,835 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-02-12T20:17:44,837 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-02-12T20:17:44,839 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_conversions.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-02-12T20:17:44,840 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid2fastq.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-02-12T20:17:44,842 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-02-12T20:17:44,845 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_conversions.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-02-12T20:17:44,846 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-02-12T20:17:44,849 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-12T20:17:44,850 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_climate_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-12T20:17:44,852 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pavian.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-12T20:17:44,854 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_vrm_editor.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-12T20:17:44,856 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_askomics.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-12T20:17:44,858 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_wallace.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-12T20:17:44,860 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_neo4j.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-12T20:17:44,862 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pangeo_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-12T20:17:44,864 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_mgnify_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-12T20:17:44,866 copying build/lib/galaxy/tools/bundled/interactive/default_notebook.ipynb -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-12T20:17:44,868 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_guacamole_desktop.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-12T20:17:44,870 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_metashark.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-12T20:17:44,872 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_cellxgene.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-12T20:17:44,873 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_higlass.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-12T20:17:44,876 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.0.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-12T20:17:44,878 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_ml_jupyter_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-12T20:17:44,881 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-12T20:17:44,883 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_vcf_iobio.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-12T20:17:44,884 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_radiant.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-12T20:17:44,886 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_panoply.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-12T20:17:44,888 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_wilson.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-12T20:17:44,890 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_paraview.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-12T20:17:44,891 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_rstudio.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-12T20:17:44,893 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_geoexplorer.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-12T20:17:44,895 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_openrefine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-12T20:17:44,897 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_isee.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-12T20:17:44,899 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pyiron.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-12T20:17:44,901 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_bam_iobio.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-12T20:17:44,903 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_simtext_app.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-12T20:17:44,905 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_ethercalc.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-12T20:17:44,907 copying build/lib/galaxy/tools/bundled/interactive/simtext_app.R -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-12T20:17:44,910 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_hicbrowser.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-12T20:17:44,912 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_phinch.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-12T20:17:44,914 copying build/lib/galaxy/tools/bundled/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled 2024-02-12T20:17:44,916 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-12T20:17:44,917 copying build/lib/galaxy/tools/bundled/maf/maf_filter.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-12T20:17:44,919 copying build/lib/galaxy/tools/bundled/maf/maf_to_bed.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-12T20:17:44,921 copying build/lib/galaxy/tools/bundled/maf/interval2maf.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-12T20:17:44,924 copying build/lib/galaxy/tools/bundled/maf/interval2maf.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-12T20:17:44,926 copying build/lib/galaxy/tools/bundled/maf/macros.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-12T20:17:44,927 copying build/lib/galaxy/tools/bundled/maf/maf_limit_size.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-12T20:17:44,929 copying build/lib/galaxy/tools/bundled/maf/maf_split_by_species.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-12T20:17:44,931 copying build/lib/galaxy/tools/bundled/maf/maf_by_block_number.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-12T20:17:44,933 copying build/lib/galaxy/tools/bundled/maf/maf_to_interval.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-12T20:17:44,934 copying build/lib/galaxy/tools/bundled/maf/maf_by_block_number.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-12T20:17:44,936 copying build/lib/galaxy/tools/bundled/maf/interval2maf_pairwise.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-12T20:17:44,938 copying build/lib/galaxy/tools/bundled/maf/maf_to_bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-12T20:17:44,940 copying build/lib/galaxy/tools/bundled/maf/maf_limit_to_species.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-12T20:17:44,942 copying build/lib/galaxy/tools/bundled/maf/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-12T20:17:44,943 copying build/lib/galaxy/tools/bundled/maf/maf_reverse_complement.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-12T20:17:44,945 copying build/lib/galaxy/tools/bundled/maf/maf_limit_to_species.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-12T20:17:44,947 copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta_multiple_sets.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-12T20:17:44,948 copying build/lib/galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-12T20:17:44,951 copying build/lib/galaxy/tools/bundled/maf/maf_limit_size.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-12T20:17:44,952 copying build/lib/galaxy/tools/bundled/maf/maf_stats.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-12T20:17:44,955 copying build/lib/galaxy/tools/bundled/maf/maf_reverse_complement.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-12T20:17:44,957 copying build/lib/galaxy/tools/bundled/maf/maf_to_bed_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-12T20:17:44,958 copying build/lib/galaxy/tools/bundled/maf/maf_stats.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-12T20:17:44,960 copying build/lib/galaxy/tools/bundled/maf/genebed_maf_to_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-12T20:17:44,962 copying build/lib/galaxy/tools/bundled/maf/maf_thread_for_species.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-12T20:17:44,964 copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta_concat.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-12T20:17:44,966 copying build/lib/galaxy/tools/bundled/maf/maf_thread_for_species.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-12T20:17:44,968 copying build/lib/galaxy/tools/bundled/maf/maf_split_by_species.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-12T20:17:44,970 copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-12T20:17:44,972 copying build/lib/galaxy/tools/bundled/maf/maf_filter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-12T20:17:44,974 copying build/lib/galaxy/tools/bundled/maf/vcf_to_maf_customtrack.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-12T20:17:44,977 copying build/lib/galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-12T20:17:44,979 copying build/lib/galaxy/tools/bundled/maf/vcf_to_maf_customtrack.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-12T20:17:44,983 copying build/lib/galaxy/tools/bundled/maf/maf_to_interval.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-12T20:17:44,986 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-02-12T20:17:44,987 copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-02-12T20:17:44,989 copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_stats.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-02-12T20:17:44,991 copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-02-12T20:17:44,993 copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_stats.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-02-12T20:17:44,995 copying build/lib/galaxy/tools/bundled/solid_tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-02-12T20:17:44,996 copying build/lib/galaxy/tools/bundled/solid_tools/qualsolid_boxplot_graph.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-02-12T20:17:44,998 copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-02-12T20:17:45,000 copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_boxplot.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-02-12T20:17:45,002 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export 2024-02-12T20:17:45,003 copying build/lib/galaxy/tools/bundled/data_export/export_remote.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export 2024-02-12T20:17:45,005 copying build/lib/galaxy/tools/bundled/data_export/send.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export 2024-02-12T20:17:45,008 copying build/lib/galaxy/tools/bundled/data_export/export_remote.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export 2024-02-12T20:17:45,010 copying build/lib/galaxy/tools/bundled/data_export/send.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export 2024-02-12T20:17:45,012 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/ngs_simulation 2024-02-12T20:17:45,013 copying build/lib/galaxy/tools/bundled/ngs_simulation/ngs_simulation.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/ngs_simulation 2024-02-12T20:17:45,016 copying build/lib/galaxy/tools/bundled/ngs_simulation/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/ngs_simulation 2024-02-12T20:17:45,018 copying build/lib/galaxy/tools/bundled/ngs_simulation/ngs_simulation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/ngs_simulation 2024-02-12T20:17:45,020 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2024-02-12T20:17:45,021 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2024-02-12T20:17:45,024 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2024-02-12T20:17:45,027 copying build/lib/galaxy/tools/bundled/metag_tools/blat_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2024-02-12T20:17:45,030 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2024-02-12T20:17:45,032 copying build/lib/galaxy/tools/bundled/metag_tools/blat_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2024-02-12T20:17:45,034 copying build/lib/galaxy/tools/bundled/metag_tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2024-02-12T20:17:45,035 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2024-02-12T20:17:45,038 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly 2024-02-12T20:17:45,039 copying build/lib/galaxy/tools/bundled/sr_assembly/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly 2024-02-12T20:17:45,040 copying build/lib/galaxy/tools/bundled/sr_assembly/velveth_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly 2024-02-12T20:17:45,042 copying build/lib/galaxy/tools/bundled/sr_assembly/velveth.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly 2024-02-12T20:17:45,044 copying build/lib/galaxy/tools/bundled/sr_assembly/velvetg_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly 2024-02-12T20:17:45,045 copying build/lib/galaxy/tools/bundled/sr_assembly/velvetg.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly 2024-02-12T20:17:45,048 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/plotting 2024-02-12T20:17:45,049 copying build/lib/galaxy/tools/bundled/plotting/boxplot.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/plotting 2024-02-12T20:17:45,051 copying build/lib/galaxy/tools/bundled/plotting/bar_chart.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/plotting 2024-02-12T20:17:45,053 copying build/lib/galaxy/tools/bundled/plotting/bar_chart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/plotting 2024-02-12T20:17:45,055 creating build/bdist.linux-armv7l/wheel/galaxy/tools/data_manager 2024-02-12T20:17:45,056 copying build/lib/galaxy/tools/data_manager/manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/data_manager 2024-02-12T20:17:45,059 copying build/lib/galaxy/tools/data_manager/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/data_manager 2024-02-12T20:17:45,060 copying build/lib/galaxy/tools/duplicate_file_to_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-12T20:17:45,062 copying build/lib/galaxy/tools/build_list_1.2.0.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-12T20:17:45,065 creating build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-02-12T20:17:45,065 copying build/lib/galaxy/tools/actions/data_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-02-12T20:17:45,067 copying build/lib/galaxy/tools/actions/model_operations.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-02-12T20:17:45,070 copying build/lib/galaxy/tools/actions/history_imp_exp.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-02-12T20:17:45,072 copying build/lib/galaxy/tools/actions/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-02-12T20:17:45,075 copying build/lib/galaxy/tools/actions/upload_common.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-02-12T20:17:45,077 copying build/lib/galaxy/tools/actions/data_source.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-02-12T20:17:45,079 copying build/lib/galaxy/tools/actions/metadata.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-02-12T20:17:45,081 copying build/lib/galaxy/tools/actions/upload.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-02-12T20:17:45,083 creating build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports 2024-02-12T20:17:45,085 creating build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-02-12T20:17:45,086 copying build/lib/galaxy/tools/error_reports/plugins/email.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-02-12T20:17:45,087 copying build/lib/galaxy/tools/error_reports/plugins/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-02-12T20:17:45,089 copying build/lib/galaxy/tools/error_reports/plugins/sentry.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-02-12T20:17:45,091 copying build/lib/galaxy/tools/error_reports/plugins/gitlab.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-02-12T20:17:45,093 copying build/lib/galaxy/tools/error_reports/plugins/influxdb.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-02-12T20:17:45,095 copying build/lib/galaxy/tools/error_reports/plugins/github.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-02-12T20:17:45,097 copying build/lib/galaxy/tools/error_reports/plugins/slack.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-02-12T20:17:45,099 copying build/lib/galaxy/tools/error_reports/plugins/json.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-02-12T20:17:45,101 copying build/lib/galaxy/tools/error_reports/plugins/base_git.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-02-12T20:17:45,103 copying build/lib/galaxy/tools/error_reports/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports 2024-02-12T20:17:45,104 copying build/lib/galaxy/tools/apply_rules.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-12T20:17:45,106 copying build/lib/galaxy/tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-12T20:17:45,110 copying build/lib/galaxy/tools/filter_failed_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-12T20:17:45,113 creating build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2024-02-12T20:17:45,114 copying build/lib/galaxy/tools/imp_exp/unpack_tar_gz_archive.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2024-02-12T20:17:45,116 copying build/lib/galaxy/tools/imp_exp/exp_history_to_archive.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2024-02-12T20:17:45,117 copying build/lib/galaxy/tools/imp_exp/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2024-02-12T20:17:45,119 copying build/lib/galaxy/tools/imp_exp/exp_history_to_uri.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2024-02-12T20:17:45,121 copying build/lib/galaxy/tools/imp_exp/export_history.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2024-02-12T20:17:45,123 copying build/lib/galaxy/tools/imp_exp/imp_history_from_archive.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2024-02-12T20:17:45,125 copying build/lib/galaxy/tools/unzip_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-12T20:17:45,126 copying build/lib/galaxy/tools/relabel_from_file.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-12T20:17:45,129 copying build/lib/galaxy/tools/tag_collection_from_file.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-12T20:17:45,131 copying build/lib/galaxy/tools/build_list.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-12T20:17:45,133 copying build/lib/galaxy/tools/extract_dataset.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-12T20:17:45,135 copying build/lib/galaxy/tools/exception_handling.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-12T20:17:45,136 copying build/lib/galaxy/tools/data_fetch.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-12T20:17:45,139 copying build/lib/galaxy/tools/merge_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-12T20:17:45,142 creating build/bdist.linux-armv7l/wheel/galaxy/tools/util 2024-02-12T20:17:45,143 copying build/lib/galaxy/tools/util/maf_utilities.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/util 2024-02-12T20:17:45,146 creating build/bdist.linux-armv7l/wheel/galaxy/tools/util/galaxyops 2024-02-12T20:17:45,147 copying build/lib/galaxy/tools/util/galaxyops/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/util/galaxyops 2024-02-12T20:17:45,149 copying build/lib/galaxy/tools/util/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/util 2024-02-12T20:17:45,151 copying build/lib/galaxy/tools/cache.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-12T20:17:45,153 copying build/lib/galaxy/tools/wrappers.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-12T20:17:45,159 copying build/lib/galaxy/tools/filter_from_file.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-12T20:17:45,162 creating build/bdist.linux-armv7l/wheel/galaxy/tools/data 2024-02-12T20:17:45,163 copying build/lib/galaxy/tools/data/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/data 2024-02-12T20:17:45,166 copying build/lib/galaxy/tools/remote_tool_eval.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-12T20:17:45,168 copying build/lib/galaxy/tools/recommendations.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-12T20:17:45,172 creating build/bdist.linux-armv7l/wheel/galaxy/tools/expressions 2024-02-12T20:17:45,173 copying build/lib/galaxy/tools/expressions/script.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions 2024-02-12T20:17:45,175 copying build/lib/galaxy/tools/expressions/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions 2024-02-12T20:17:45,177 copying build/lib/galaxy/tools/expressions/cwlNodeEngine.js -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions 2024-02-12T20:17:45,179 copying build/lib/galaxy/tools/expressions/evaluation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions 2024-02-12T20:17:45,181 copying build/lib/galaxy/tools/expressions/util.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions 2024-02-12T20:17:45,184 creating build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-02-12T20:17:45,185 copying build/lib/galaxy/tools/parameters/grouping.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-02-12T20:17:45,188 copying build/lib/galaxy/tools/parameters/history_query.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-02-12T20:17:45,190 copying build/lib/galaxy/tools/parameters/basic.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-02-12T20:17:45,197 copying build/lib/galaxy/tools/parameters/validation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-02-12T20:17:45,202 copying build/lib/galaxy/tools/parameters/dynamic_options.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-02-12T20:17:45,205 copying build/lib/galaxy/tools/parameters/dataset_matcher.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-02-12T20:17:45,208 copying build/lib/galaxy/tools/parameters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-02-12T20:17:45,211 copying build/lib/galaxy/tools/parameters/wrapped.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-02-12T20:17:45,213 copying build/lib/galaxy/tools/parameters/sanitize.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-02-12T20:17:45,216 copying build/lib/galaxy/tools/parameters/meta.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-02-12T20:17:45,219 copying build/lib/galaxy/tools/parameters/wrapped_json.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-02-12T20:17:45,222 copying build/lib/galaxy/tools/parameters/input_translation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-02-12T20:17:45,225 creating build/bdist.linux-armv7l/wheel/galaxy/tools/search 2024-02-12T20:17:45,226 copying build/lib/galaxy/tools/search/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/search 2024-02-12T20:17:45,230 copying build/lib/galaxy/tools/special_tools.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-12T20:17:45,233 copying build/lib/galaxy/tools/sort_collection_list.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-12T20:17:45,235 copying build/lib/galaxy/tools/repositories.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-12T20:17:45,238 copying build/lib/galaxy/tools/errors.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-12T20:17:45,240 copying build/lib/galaxy/tools/data_fetch.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-12T20:17:45,242 copying build/lib/galaxy/tools/evaluation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-12T20:17:45,246 copying build/lib/galaxy/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-02-12T20:17:45,249 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed 2024-02-12T20:17:45,251 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/metadata 2024-02-12T20:17:45,252 copying build/lib/galaxy/tool_shed/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/metadata 2024-02-12T20:17:45,254 copying build/lib/galaxy/tool_shed/metadata/metadata_generator.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/metadata 2024-02-12T20:17:45,259 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/tools 2024-02-12T20:17:45,259 copying build/lib/galaxy/tool_shed/tools/data_table_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/tools 2024-02-12T20:17:45,262 copying build/lib/galaxy/tool_shed/tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/tools 2024-02-12T20:17:45,264 copying build/lib/galaxy/tool_shed/tools/tool_validator.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/tools 2024-02-12T20:17:45,266 copying build/lib/galaxy/tool_shed/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed 2024-02-12T20:17:45,268 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-02-12T20:17:45,269 copying build/lib/galaxy/tool_shed/util/tool_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-02-12T20:17:45,271 copying build/lib/galaxy/tool_shed/util/container_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-02-12T20:17:45,273 copying build/lib/galaxy/tool_shed/util/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-02-12T20:17:45,274 copying build/lib/galaxy/tool_shed/util/dependency_display.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-02-12T20:17:45,277 copying build/lib/galaxy/tool_shed/util/utility_container_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-02-12T20:17:45,280 copying build/lib/galaxy/tool_shed/util/metadata_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-02-12T20:17:45,282 copying build/lib/galaxy/tool_shed/util/tool_dependency_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-02-12T20:17:45,284 copying build/lib/galaxy/tool_shed/util/hg_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-02-12T20:17:45,286 copying build/lib/galaxy/tool_shed/util/basic_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-02-12T20:17:45,288 copying build/lib/galaxy/tool_shed/util/shed_util_common.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-02-12T20:17:45,290 copying build/lib/galaxy/tool_shed/util/repository_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-02-12T20:17:45,293 copying build/lib/galaxy/tool_shed/cache.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed 2024-02-12T20:17:45,296 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install 2024-02-12T20:17:45,297 copying build/lib/galaxy/tool_shed/galaxy_install/update_repository_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install 2024-02-12T20:17:45,300 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/metadata 2024-02-12T20:17:45,301 copying build/lib/galaxy/tool_shed/galaxy_install/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/metadata 2024-02-12T20:17:45,302 copying build/lib/galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/metadata 2024-02-12T20:17:45,306 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/tools 2024-02-12T20:17:45,307 copying build/lib/galaxy/tool_shed/galaxy_install/tools/data_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/tools 2024-02-12T20:17:45,310 copying build/lib/galaxy/tool_shed/galaxy_install/tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/tools 2024-02-12T20:17:45,312 copying build/lib/galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/tools 2024-02-12T20:17:45,316 copying build/lib/galaxy/tool_shed/galaxy_install/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install 2024-02-12T20:17:45,317 copying build/lib/galaxy/tool_shed/galaxy_install/install_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install 2024-02-12T20:17:45,321 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/repository_dependencies 2024-02-12T20:17:45,322 copying build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/repository_dependencies 2024-02-12T20:17:45,324 copying build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/repository_dependencies 2024-02-12T20:17:45,327 copying build/lib/galaxy/tool_shed/galaxy_install/installed_repository_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install 2024-02-12T20:17:45,330 copying build/lib/galaxy/tool_shed/repository_type.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed 2024-02-12T20:17:45,333 creating build/bdist.linux-armv7l/wheel/galaxy/celery 2024-02-12T20:17:45,334 copying build/lib/galaxy/celery/tasks.py -> build/bdist.linux-armv7l/wheel/galaxy/celery 2024-02-12T20:17:45,337 copying build/lib/galaxy/celery/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/celery 2024-02-12T20:17:45,340 copying build/lib/galaxy/celery/_serialization.py -> build/bdist.linux-armv7l/wheel/galaxy/celery 2024-02-12T20:17:45,342 copying build/lib/galaxy/di.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-02-12T20:17:45,344 creating build/bdist.linux-armv7l/wheel/galaxy/work 2024-02-12T20:17:45,345 copying build/lib/galaxy/work/context.py -> build/bdist.linux-armv7l/wheel/galaxy/work 2024-02-12T20:17:45,348 copying build/lib/galaxy/work/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/work 2024-02-12T20:17:45,350 copying build/lib/galaxy/main.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-02-12T20:17:45,353 creating build/bdist.linux-armv7l/wheel/galaxy/webhooks 2024-02-12T20:17:45,354 copying build/lib/galaxy/webhooks/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/webhooks 2024-02-12T20:17:45,357 creating build/bdist.linux-armv7l/wheel/galaxy/authnz 2024-02-12T20:17:45,358 copying build/lib/galaxy/authnz/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/authnz 2024-02-12T20:17:45,360 copying build/lib/galaxy/authnz/managers.py -> build/bdist.linux-armv7l/wheel/galaxy/authnz 2024-02-12T20:17:45,363 copying build/lib/galaxy/authnz/psa_authnz.py -> build/bdist.linux-armv7l/wheel/galaxy/authnz 2024-02-12T20:17:45,365 copying build/lib/galaxy/authnz/custos_authnz.py -> build/bdist.linux-armv7l/wheel/galaxy/authnz 2024-02-12T20:17:45,368 copying build/lib/galaxy/authnz/util.py -> build/bdist.linux-armv7l/wheel/galaxy/authnz 2024-02-12T20:17:45,370 creating build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-02-12T20:17:45,371 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/reports 2024-02-12T20:17:45,373 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/reports/generators 2024-02-12T20:17:45,374 copying build/lib/galaxy/workflow/reports/generators/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/reports/generators 2024-02-12T20:17:45,376 copying build/lib/galaxy/workflow/reports/generators/markdown.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/reports/generators 2024-02-12T20:17:45,377 copying build/lib/galaxy/workflow/reports/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/reports 2024-02-12T20:17:45,379 copying build/lib/galaxy/workflow/scheduling_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-02-12T20:17:45,382 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/resources 2024-02-12T20:17:45,383 copying build/lib/galaxy/workflow/resources/example.py.sample -> build/bdist.linux-armv7l/wheel/galaxy/workflow/resources 2024-02-12T20:17:45,385 copying build/lib/galaxy/workflow/resources/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/resources 2024-02-12T20:17:45,387 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/schedulers 2024-02-12T20:17:45,388 copying build/lib/galaxy/workflow/schedulers/core.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/schedulers 2024-02-12T20:17:45,390 copying build/lib/galaxy/workflow/schedulers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/schedulers 2024-02-12T20:17:45,391 copying build/lib/galaxy/workflow/run_request.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-02-12T20:17:45,394 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/refactor 2024-02-12T20:17:45,395 copying build/lib/galaxy/workflow/refactor/execute.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/refactor 2024-02-12T20:17:45,398 copying build/lib/galaxy/workflow/refactor/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/refactor 2024-02-12T20:17:45,399 copying build/lib/galaxy/workflow/refactor/schema.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/refactor 2024-02-12T20:17:45,401 copying build/lib/galaxy/workflow/extract.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-02-12T20:17:45,403 copying build/lib/galaxy/workflow/trs_proxy.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-02-12T20:17:45,406 copying build/lib/galaxy/workflow/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-02-12T20:17:45,407 copying build/lib/galaxy/workflow/run.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-02-12T20:17:45,410 copying build/lib/galaxy/workflow/modules.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-02-12T20:17:45,414 copying build/lib/galaxy/workflow/render.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-02-12T20:17:45,416 copying build/lib/galaxy/workflow/steps.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-02-12T20:17:45,418 copying build/lib/galaxy/py.typed -> build/bdist.linux-armv7l/wheel/galaxy 2024-02-12T20:17:45,419 creating build/bdist.linux-armv7l/wheel/galaxy/forms 2024-02-12T20:17:45,420 copying build/lib/galaxy/forms/forms.py -> build/bdist.linux-armv7l/wheel/galaxy/forms 2024-02-12T20:17:45,423 copying build/lib/galaxy/forms/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/forms 2024-02-12T20:17:45,424 copying build/lib/galaxy/queues.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-02-12T20:17:45,426 copying build/lib/galaxy/config_watchers.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-02-12T20:17:45,428 running install_egg_info 2024-02-12T20:17:45,438 Copying galaxy_app.egg-info to build/bdist.linux-armv7l/wheel/galaxy_app-23.1.dev0-py3.11.egg-info 2024-02-12T20:17:45,450 running install_scripts 2024-02-12T20:17:45,475 creating build/bdist.linux-armv7l/wheel/galaxy_app-23.1.dev0.dist-info/WHEEL 2024-02-12T20:17:45,478 creating '/tmp/pip-wheel-ybmdw70d/.tmp-bbdn_3if/galaxy_app-23.1.dev0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-02-12T20:17:45,480 adding 'galaxy/__init__.py' 2024-02-12T20:17:45,485 adding 'galaxy/app.py' 2024-02-12T20:17:45,487 adding 'galaxy/config_watchers.py' 2024-02-12T20:17:45,488 adding 'galaxy/di.py' 2024-02-12T20:17:45,491 adding 'galaxy/main.py' 2024-02-12T20:17:45,492 adding 'galaxy/main_config.py' 2024-02-12T20:17:45,494 adding 'galaxy/py.typed' 2024-02-12T20:17:45,496 adding 'galaxy/queue_worker.py' 2024-02-12T20:17:45,498 adding 'galaxy/queues.py' 2024-02-12T20:17:45,500 adding 'galaxy/structured_app.py' 2024-02-12T20:17:45,502 adding 'galaxy/actions/__init__.py' 2024-02-12T20:17:45,504 adding 'galaxy/actions/library.py' 2024-02-12T20:17:45,506 adding 'galaxy/app_unittest_utils/__init__.py' 2024-02-12T20:17:45,508 adding 'galaxy/app_unittest_utils/galaxy_mock.py' 2024-02-12T20:17:45,510 adding 'galaxy/app_unittest_utils/tools_support.py' 2024-02-12T20:17:45,512 adding 'galaxy/authnz/__init__.py' 2024-02-12T20:17:45,515 adding 'galaxy/authnz/custos_authnz.py' 2024-02-12T20:17:45,518 adding 'galaxy/authnz/managers.py' 2024-02-12T20:17:45,522 adding 'galaxy/authnz/psa_authnz.py' 2024-02-12T20:17:45,523 adding 'galaxy/authnz/util.py' 2024-02-12T20:17:45,525 adding 'galaxy/celery/__init__.py' 2024-02-12T20:17:45,527 adding 'galaxy/celery/_serialization.py' 2024-02-12T20:17:45,529 adding 'galaxy/celery/tasks.py' 2024-02-12T20:17:45,532 adding 'galaxy/dependencies/__init__.py' 2024-02-12T20:17:45,533 adding 'galaxy/dependencies/conditional-requirements.txt' 2024-02-12T20:17:45,535 adding 'galaxy/dependencies/dev-requirements.txt' 2024-02-12T20:17:45,536 adding 'galaxy/dependencies/lint-requirements.txt' 2024-02-12T20:17:45,538 adding 'galaxy/dependencies/pinned-lint-requirements.txt' 2024-02-12T20:17:45,540 adding 'galaxy/dependencies/pinned-requirements.txt' 2024-02-12T20:17:45,541 adding 'galaxy/dependencies/pinned-typecheck-requirements.txt' 2024-02-12T20:17:45,543 adding 'galaxy/dependencies/typecheck-requirements.txt' 2024-02-12T20:17:45,545 adding 'galaxy/dependencies/update.sh' 2024-02-12T20:17:45,546 adding 'galaxy/dependencies/update_lint_requirements.sh' 2024-02-12T20:17:45,548 adding 'galaxy/forms/__init__.py' 2024-02-12T20:17:45,550 adding 'galaxy/forms/forms.py' 2024-02-12T20:17:45,567 adding 'galaxy/jobs/__init__.py' 2024-02-12T20:17:45,570 adding 'galaxy/jobs/command_factory.py' 2024-02-12T20:17:45,578 adding 'galaxy/jobs/dynamic_tool_destination.py' 2024-02-12T20:17:45,585 adding 'galaxy/jobs/handler.py' 2024-02-12T20:17:45,587 adding 'galaxy/jobs/manager.py' 2024-02-12T20:17:45,589 adding 'galaxy/jobs/mapper.py' 2024-02-12T20:17:45,591 adding 'galaxy/jobs/rule_helper.py' 2024-02-12T20:17:45,592 adding 'galaxy/jobs/stock_rules.py' 2024-02-12T20:17:45,594 adding 'galaxy/jobs/rules/__init__.py' 2024-02-12T20:17:45,600 adding 'galaxy/jobs/runners/__init__.py' 2024-02-12T20:17:45,603 adding 'galaxy/jobs/runners/aws.py' 2024-02-12T20:17:45,605 adding 'galaxy/jobs/runners/chronos.py' 2024-02-12T20:17:45,608 adding 'galaxy/jobs/runners/cli.py' 2024-02-12T20:17:45,610 adding 'galaxy/jobs/runners/condor.py' 2024-02-12T20:17:45,613 adding 'galaxy/jobs/runners/drmaa.py' 2024-02-12T20:17:45,616 adding 'galaxy/jobs/runners/godocker.py' 2024-02-12T20:17:45,621 adding 'galaxy/jobs/runners/kubernetes.py' 2024-02-12T20:17:45,623 adding 'galaxy/jobs/runners/local.py' 2024-02-12T20:17:45,626 adding 'galaxy/jobs/runners/pbs.py' 2024-02-12T20:17:45,633 adding 'galaxy/jobs/runners/pulsar.py' 2024-02-12T20:17:45,636 adding 'galaxy/jobs/runners/slurm.py' 2024-02-12T20:17:45,637 adding 'galaxy/jobs/runners/state_handler_factory.py' 2024-02-12T20:17:45,639 adding 'galaxy/jobs/runners/tasks.py' 2024-02-12T20:17:45,644 adding 'galaxy/jobs/runners/univa.py' 2024-02-12T20:17:45,645 adding 'galaxy/jobs/runners/state_handlers/__init__.py' 2024-02-12T20:17:45,647 adding 'galaxy/jobs/runners/state_handlers/_safe_eval.py' 2024-02-12T20:17:45,649 adding 'galaxy/jobs/runners/state_handlers/resubmit.py' 2024-02-12T20:17:45,651 adding 'galaxy/jobs/runners/util/__init__.py' 2024-02-12T20:17:45,653 adding 'galaxy/jobs/runners/util/env.py' 2024-02-12T20:17:45,654 adding 'galaxy/jobs/runners/util/external.py' 2024-02-12T20:17:45,655 adding 'galaxy/jobs/runners/util/fork_safe_write.py' 2024-02-12T20:17:45,657 adding 'galaxy/jobs/runners/util/kill.py' 2024-02-12T20:17:45,658 adding 'galaxy/jobs/runners/util/process_groups.py' 2024-02-12T20:17:45,661 adding 'galaxy/jobs/runners/util/pykube_util.py' 2024-02-12T20:17:45,662 adding 'galaxy/jobs/runners/util/sudo.py' 2024-02-12T20:17:45,664 adding 'galaxy/jobs/runners/util/cli/__init__.py' 2024-02-12T20:17:45,666 adding 'galaxy/jobs/runners/util/cli/factory.py' 2024-02-12T20:17:45,668 adding 'galaxy/jobs/runners/util/cli/job/__init__.py' 2024-02-12T20:17:45,669 adding 'galaxy/jobs/runners/util/cli/job/lsf.py' 2024-02-12T20:17:45,671 adding 'galaxy/jobs/runners/util/cli/job/pbs.py' 2024-02-12T20:17:45,672 adding 'galaxy/jobs/runners/util/cli/job/slurm.py' 2024-02-12T20:17:45,673 adding 'galaxy/jobs/runners/util/cli/job/slurm_torque.py' 2024-02-12T20:17:45,675 adding 'galaxy/jobs/runners/util/cli/job/torque.py' 2024-02-12T20:17:45,677 adding 'galaxy/jobs/runners/util/cli/shell/__init__.py' 2024-02-12T20:17:45,678 adding 'galaxy/jobs/runners/util/cli/shell/local.py' 2024-02-12T20:17:45,680 adding 'galaxy/jobs/runners/util/cli/shell/rsh.py' 2024-02-12T20:17:45,682 adding 'galaxy/jobs/runners/util/condor/__init__.py' 2024-02-12T20:17:45,683 adding 'galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh' 2024-02-12T20:17:45,685 adding 'galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh' 2024-02-12T20:17:45,686 adding 'galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh' 2024-02-12T20:17:45,688 adding 'galaxy/jobs/runners/util/job_script/__init__.py' 2024-02-12T20:17:45,690 adding 'galaxy/jobs/splitters/__init__.py' 2024-02-12T20:17:45,691 adding 'galaxy/jobs/splitters/basic.py' 2024-02-12T20:17:45,693 adding 'galaxy/jobs/splitters/multi.py' 2024-02-12T20:17:45,696 adding 'galaxy/managers/__init__.py' 2024-02-12T20:17:45,697 adding 'galaxy/managers/annotatable.py' 2024-02-12T20:17:45,699 adding 'galaxy/managers/api_keys.py' 2024-02-12T20:17:45,706 adding 'galaxy/managers/base.py' 2024-02-12T20:17:45,708 adding 'galaxy/managers/citations.py' 2024-02-12T20:17:45,711 adding 'galaxy/managers/cloud.py' 2024-02-12T20:17:45,712 adding 'galaxy/managers/cloudauthzs.py' 2024-02-12T20:17:45,717 adding 'galaxy/managers/collections.py' 2024-02-12T20:17:45,719 adding 'galaxy/managers/collections_util.py' 2024-02-12T20:17:45,722 adding 'galaxy/managers/configuration.py' 2024-02-12T20:17:45,724 adding 'galaxy/managers/context.py' 2024-02-12T20:17:45,729 adding 'galaxy/managers/datasets.py' 2024-02-12T20:17:45,731 adding 'galaxy/managers/datatypes.py' 2024-02-12T20:17:45,732 adding 'galaxy/managers/deletable.py' 2024-02-12T20:17:45,734 adding 'galaxy/managers/display_applications.py' 2024-02-12T20:17:45,735 adding 'galaxy/managers/executables.py' 2024-02-12T20:17:45,737 adding 'galaxy/managers/export_tracker.py' 2024-02-12T20:17:45,740 adding 'galaxy/managers/folders.py' 2024-02-12T20:17:45,741 adding 'galaxy/managers/genomes.py' 2024-02-12T20:17:45,743 adding 'galaxy/managers/group_roles.py' 2024-02-12T20:17:45,744 adding 'galaxy/managers/group_users.py' 2024-02-12T20:17:45,746 adding 'galaxy/managers/groups.py' 2024-02-12T20:17:45,750 adding 'galaxy/managers/hdas.py' 2024-02-12T20:17:45,752 adding 'galaxy/managers/hdcas.py' 2024-02-12T20:17:45,756 adding 'galaxy/managers/histories.py' 2024-02-12T20:17:45,760 adding 'galaxy/managers/history_contents.py' 2024-02-12T20:17:45,763 adding 'galaxy/managers/interactivetool.py' 2024-02-12T20:17:45,764 adding 'galaxy/managers/job_connections.py' 2024-02-12T20:17:45,769 adding 'galaxy/managers/jobs.py' 2024-02-12T20:17:45,771 adding 'galaxy/managers/lddas.py' 2024-02-12T20:17:45,773 adding 'galaxy/managers/libraries.py' 2024-02-12T20:17:45,776 adding 'galaxy/managers/library_datasets.py' 2024-02-12T20:17:45,787 adding 'galaxy/managers/licenses.json' 2024-02-12T20:17:45,790 adding 'galaxy/managers/licenses.py' 2024-02-12T20:17:45,791 adding 'galaxy/managers/markdown_export_base.css' 2024-02-12T20:17:45,793 adding 'galaxy/managers/markdown_parse.py' 2024-02-12T20:17:45,797 adding 'galaxy/managers/markdown_util.py' 2024-02-12T20:17:45,798 adding 'galaxy/managers/metrics.py' 2024-02-12T20:17:45,800 adding 'galaxy/managers/model_stores.py' 2024-02-12T20:17:45,803 adding 'galaxy/managers/notification.py' 2024-02-12T20:17:45,806 adding 'galaxy/managers/pages.py' 2024-02-12T20:17:45,808 adding 'galaxy/managers/quotas.py' 2024-02-12T20:17:45,809 adding 'galaxy/managers/ratable.py' 2024-02-12T20:17:45,811 adding 'galaxy/managers/rbac_secured.py' 2024-02-12T20:17:45,813 adding 'galaxy/managers/remote_files.py' 2024-02-12T20:17:45,814 adding 'galaxy/managers/roles.py' 2024-02-12T20:17:45,815 adding 'galaxy/managers/secured.py' 2024-02-12T20:17:45,816 adding 'galaxy/managers/session.py' 2024-02-12T20:17:45,819 adding 'galaxy/managers/sharable.py' 2024-02-12T20:17:45,821 adding 'galaxy/managers/taggable.py' 2024-02-12T20:17:45,822 adding 'galaxy/managers/tags.py' 2024-02-12T20:17:45,823 adding 'galaxy/managers/tasks.py' 2024-02-12T20:17:45,824 adding 'galaxy/managers/tool_data.py' 2024-02-12T20:17:45,826 adding 'galaxy/managers/tools.py' 2024-02-12T20:17:45,830 adding 'galaxy/managers/users.py' 2024-02-12T20:17:45,831 adding 'galaxy/managers/visualizations.py' 2024-02-12T20:17:45,842 adding 'galaxy/managers/workflows.py' 2024-02-12T20:17:45,844 adding 'galaxy/tool_shed/__init__.py' 2024-02-12T20:17:45,845 adding 'galaxy/tool_shed/cache.py' 2024-02-12T20:17:45,847 adding 'galaxy/tool_shed/repository_type.py' 2024-02-12T20:17:45,848 adding 'galaxy/tool_shed/galaxy_install/__init__.py' 2024-02-12T20:17:45,853 adding 'galaxy/tool_shed/galaxy_install/install_manager.py' 2024-02-12T20:17:45,859 adding 'galaxy/tool_shed/galaxy_install/installed_repository_manager.py' 2024-02-12T20:17:45,860 adding 'galaxy/tool_shed/galaxy_install/update_repository_manager.py' 2024-02-12T20:17:45,862 adding 'galaxy/tool_shed/galaxy_install/metadata/__init__.py' 2024-02-12T20:17:45,864 adding 'galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py' 2024-02-12T20:17:45,865 adding 'galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py' 2024-02-12T20:17:45,869 adding 'galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py' 2024-02-12T20:17:45,871 adding 'galaxy/tool_shed/galaxy_install/tools/__init__.py' 2024-02-12T20:17:45,873 adding 'galaxy/tool_shed/galaxy_install/tools/data_manager.py' 2024-02-12T20:17:45,877 adding 'galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py' 2024-02-12T20:17:45,878 adding 'galaxy/tool_shed/metadata/__init__.py' 2024-02-12T20:17:45,884 adding 'galaxy/tool_shed/metadata/metadata_generator.py' 2024-02-12T20:17:45,886 adding 'galaxy/tool_shed/tools/__init__.py' 2024-02-12T20:17:45,888 adding 'galaxy/tool_shed/tools/data_table_manager.py' 2024-02-12T20:17:45,889 adding 'galaxy/tool_shed/tools/tool_validator.py' 2024-02-12T20:17:45,891 adding 'galaxy/tool_shed/util/__init__.py' 2024-02-12T20:17:45,893 adding 'galaxy/tool_shed/util/basic_util.py' 2024-02-12T20:17:45,894 adding 'galaxy/tool_shed/util/container_util.py' 2024-02-12T20:17:45,896 adding 'galaxy/tool_shed/util/dependency_display.py' 2024-02-12T20:17:45,898 adding 'galaxy/tool_shed/util/hg_util.py' 2024-02-12T20:17:45,899 adding 'galaxy/tool_shed/util/metadata_util.py' 2024-02-12T20:17:45,903 adding 'galaxy/tool_shed/util/repository_util.py' 2024-02-12T20:17:45,905 adding 'galaxy/tool_shed/util/shed_util_common.py' 2024-02-12T20:17:45,907 adding 'galaxy/tool_shed/util/tool_dependency_util.py' 2024-02-12T20:17:45,909 adding 'galaxy/tool_shed/util/tool_util.py' 2024-02-12T20:17:45,913 adding 'galaxy/tool_shed/util/utility_container_manager.py' 2024-02-12T20:17:45,935 adding 'galaxy/tools/__init__.py' 2024-02-12T20:17:45,938 adding 'galaxy/tools/apply_rules.xml' 2024-02-12T20:17:45,939 adding 'galaxy/tools/biotools.py' 2024-02-12T20:17:45,940 adding 'galaxy/tools/build_list.xml' 2024-02-12T20:17:45,942 adding 'galaxy/tools/build_list_1.2.0.xml' 2024-02-12T20:17:45,944 adding 'galaxy/tools/cache.py' 2024-02-12T20:17:45,947 adding 'galaxy/tools/data_fetch.py' 2024-02-12T20:17:45,949 adding 'galaxy/tools/data_fetch.xml' 2024-02-12T20:17:45,950 adding 'galaxy/tools/duplicate_file_to_collection.xml' 2024-02-12T20:17:45,952 adding 'galaxy/tools/errors.py' 2024-02-12T20:17:45,957 adding 'galaxy/tools/evaluation.py' 2024-02-12T20:17:45,959 adding 'galaxy/tools/exception_handling.py' 2024-02-12T20:17:45,962 adding 'galaxy/tools/execute.py' 2024-02-12T20:17:45,963 adding 'galaxy/tools/extract_dataset.xml' 2024-02-12T20:17:45,965 adding 'galaxy/tools/filter_empty_collection.xml' 2024-02-12T20:17:45,966 adding 'galaxy/tools/filter_failed_collection.xml' 2024-02-12T20:17:45,967 adding 'galaxy/tools/filter_from_file.xml' 2024-02-12T20:17:45,968 adding 'galaxy/tools/flatten_collection.xml' 2024-02-12T20:17:45,970 adding 'galaxy/tools/merge_collection.xml' 2024-02-12T20:17:45,972 adding 'galaxy/tools/recommendations.py' 2024-02-12T20:17:45,974 adding 'galaxy/tools/relabel_from_file.xml' 2024-02-12T20:17:45,975 adding 'galaxy/tools/remote_tool_eval.py' 2024-02-12T20:17:45,977 adding 'galaxy/tools/repositories.py' 2024-02-12T20:17:45,978 adding 'galaxy/tools/sort_collection_list.xml' 2024-02-12T20:17:45,979 adding 'galaxy/tools/special_tools.py' 2024-02-12T20:17:45,981 adding 'galaxy/tools/tag_collection_from_file.xml' 2024-02-12T20:17:45,983 adding 'galaxy/tools/test.py' 2024-02-12T20:17:45,985 adding 'galaxy/tools/unzip_collection.xml' 2024-02-12T20:17:45,988 adding 'galaxy/tools/wrappers.py' 2024-02-12T20:17:45,990 adding 'galaxy/tools/zip_collection.xml' 2024-02-12T20:17:45,998 adding 'galaxy/tools/actions/__init__.py' 2024-02-12T20:17:46,000 adding 'galaxy/tools/actions/data_manager.py' 2024-02-12T20:17:46,001 adding 'galaxy/tools/actions/data_source.py' 2024-02-12T20:17:46,003 adding 'galaxy/tools/actions/history_imp_exp.py' 2024-02-12T20:17:46,005 adding 'galaxy/tools/actions/metadata.py' 2024-02-12T20:17:46,006 adding 'galaxy/tools/actions/model_operations.py' 2024-02-12T20:17:46,008 adding 'galaxy/tools/actions/upload.py' 2024-02-12T20:17:46,010 adding 'galaxy/tools/actions/upload_common.py' 2024-02-12T20:17:46,012 adding 'galaxy/tools/bundled/__init__.py' 2024-02-12T20:17:46,014 adding 'galaxy/tools/bundled/data_export/export_remote.py' 2024-02-12T20:17:46,015 adding 'galaxy/tools/bundled/data_export/export_remote.xml' 2024-02-12T20:17:46,023 adding 'galaxy/tools/bundled/data_export/send.py' 2024-02-12T20:17:46,024 adding 'galaxy/tools/bundled/data_export/send.xml' 2024-02-12T20:17:46,026 adding 'galaxy/tools/bundled/data_source/__init__.py' 2024-02-12T20:17:46,027 adding 'galaxy/tools/bundled/data_source/access_libraries.xml' 2024-02-12T20:17:46,029 adding 'galaxy/tools/bundled/data_source/biomart.xml' 2024-02-12T20:17:46,030 adding 'galaxy/tools/bundled/data_source/biomart_test.xml' 2024-02-12T20:17:46,032 adding 'galaxy/tools/bundled/data_source/cbi_rice_mart.xml' 2024-02-12T20:17:46,033 adding 'galaxy/tools/bundled/data_source/data_source.py' 2024-02-12T20:17:46,035 adding 'galaxy/tools/bundled/data_source/ebi_sra.xml' 2024-02-12T20:17:46,036 adding 'galaxy/tools/bundled/data_source/eupathdb.xml' 2024-02-12T20:17:46,037 adding 'galaxy/tools/bundled/data_source/fly_modencode.xml' 2024-02-12T20:17:46,039 adding 'galaxy/tools/bundled/data_source/flymine.xml' 2024-02-12T20:17:46,040 adding 'galaxy/tools/bundled/data_source/flymine_test.xml' 2024-02-12T20:17:46,042 adding 'galaxy/tools/bundled/data_source/genbank.py' 2024-02-12T20:17:46,043 adding 'galaxy/tools/bundled/data_source/genbank.xml' 2024-02-12T20:17:46,045 adding 'galaxy/tools/bundled/data_source/gramene_mart.xml' 2024-02-12T20:17:46,046 adding 'galaxy/tools/bundled/data_source/hapmapmart.xml' 2024-02-12T20:17:46,047 adding 'galaxy/tools/bundled/data_source/hbvar.xml' 2024-02-12T20:17:46,049 adding 'galaxy/tools/bundled/data_source/import.py' 2024-02-12T20:17:46,050 adding 'galaxy/tools/bundled/data_source/import.xml' 2024-02-12T20:17:46,051 adding 'galaxy/tools/bundled/data_source/intermine.xml' 2024-02-12T20:17:46,053 adding 'galaxy/tools/bundled/data_source/metabolicmine.xml' 2024-02-12T20:17:46,054 adding 'galaxy/tools/bundled/data_source/microbial_import.py' 2024-02-12T20:17:46,056 adding 'galaxy/tools/bundled/data_source/microbial_import.xml' 2024-02-12T20:17:46,058 adding 'galaxy/tools/bundled/data_source/microbial_import_code.py' 2024-02-12T20:17:46,059 adding 'galaxy/tools/bundled/data_source/modmine.xml' 2024-02-12T20:17:46,060 adding 'galaxy/tools/bundled/data_source/mousemine.xml' 2024-02-12T20:17:46,061 adding 'galaxy/tools/bundled/data_source/ncbi_datasets.xml' 2024-02-12T20:17:46,062 adding 'galaxy/tools/bundled/data_source/ratmine.xml' 2024-02-12T20:17:46,064 adding 'galaxy/tools/bundled/data_source/sra.xml' 2024-02-12T20:17:46,065 adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml' 2024-02-12T20:17:46,067 adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml' 2024-02-12T20:17:46,068 adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml' 2024-02-12T20:17:46,070 adding 'galaxy/tools/bundled/data_source/upload.py' 2024-02-12T20:17:46,072 adding 'galaxy/tools/bundled/data_source/upload.xml' 2024-02-12T20:17:46,074 adding 'galaxy/tools/bundled/data_source/worm_modencode.xml' 2024-02-12T20:17:46,075 adding 'galaxy/tools/bundled/data_source/wormbase.xml' 2024-02-12T20:17:46,076 adding 'galaxy/tools/bundled/data_source/wormbase_test.xml' 2024-02-12T20:17:46,077 adding 'galaxy/tools/bundled/data_source/yeastmine.xml' 2024-02-12T20:17:46,078 adding 'galaxy/tools/bundled/data_source/zebrafishmine.xml' 2024-02-12T20:17:46,080 adding 'galaxy/tools/bundled/expression_tools/expression_macros.xml' 2024-02-12T20:17:46,081 adding 'galaxy/tools/bundled/expression_tools/parse_values_from_file.xml' 2024-02-12T20:17:46,083 adding 'galaxy/tools/bundled/expression_tools/pick_value.xml' 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'galaxy/tools/bundled/filters/grep.xml' 2024-02-12T20:17:46,138 adding 'galaxy/tools/bundled/filters/grep_1.0.1.xml' 2024-02-12T20:17:46,139 adding 'galaxy/tools/bundled/filters/gtf2bedgraph.xml' 2024-02-12T20:17:46,141 adding 'galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py' 2024-02-12T20:17:46,142 adding 'galaxy/tools/bundled/filters/headWrapper.xml' 2024-02-12T20:17:46,144 adding 'galaxy/tools/bundled/filters/join.py' 2024-02-12T20:17:46,146 adding 'galaxy/tools/bundled/filters/joinWrapper.py' 2024-02-12T20:17:46,147 adding 'galaxy/tools/bundled/filters/joiner.xml' 2024-02-12T20:17:46,148 adding 'galaxy/tools/bundled/filters/joiner2.xml' 2024-02-12T20:17:46,150 adding 'galaxy/tools/bundled/filters/lav_to_bed.py' 2024-02-12T20:17:46,151 adding 'galaxy/tools/bundled/filters/lav_to_bed.xml' 2024-02-12T20:17:46,152 adding 'galaxy/tools/bundled/filters/lav_to_bed_code.py' 2024-02-12T20:17:46,153 adding 'galaxy/tools/bundled/filters/mergeCols.py' 2024-02-12T20:17:46,155 adding 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2024-02-12T20:17:46,656 adding 'galaxy_app-23.1.dev0.dist-info/LICENSE' 2024-02-12T20:17:46,658 adding 'galaxy_app-23.1.dev0.dist-info/METADATA' 2024-02-12T20:17:46,659 adding 'galaxy_app-23.1.dev0.dist-info/WHEEL' 2024-02-12T20:17:46,659 adding 'galaxy_app-23.1.dev0.dist-info/entry_points.txt' 2024-02-12T20:17:46,660 adding 'galaxy_app-23.1.dev0.dist-info/top_level.txt' 2024-02-12T20:17:46,670 adding 'galaxy_app-23.1.dev0.dist-info/RECORD' 2024-02-12T20:17:46,693 removing build/bdist.linux-armv7l/wheel 2024-02-12T20:17:46,934 Building wheel for galaxy-app (pyproject.toml): finished with status 'done' 2024-02-12T20:17:46,965 Created wheel for galaxy-app: filename=galaxy_app-23.1.dev0-py3-none-any.whl size=1391788 sha256=c9198ae7cb3065b124471a6e7c9b40207d05b9dd860896249bd107558b62eabd 2024-02-12T20:17:46,967 Stored in directory: /tmp/pip-ephem-wheel-cache-yf11lvs5/wheels/41/97/47/6c2755249f4b62240058832ef4fdd2edce6902c6fa912dfe5a 2024-02-12T20:17:46,996 Successfully built galaxy-app 2024-02-12T20:17:47,034 Removed build tracker: '/tmp/pip-build-tracker-1mijl4o5'