2024-02-14T15:15:40,131 Created temporary directory: /tmp/pip-build-tracker-y751woyo
2024-02-14T15:15:40,133 Initialized build tracking at /tmp/pip-build-tracker-y751woyo
2024-02-14T15:15:40,133 Created build tracker: /tmp/pip-build-tracker-y751woyo
2024-02-14T15:15:40,133 Entered build tracker: /tmp/pip-build-tracker-y751woyo
2024-02-14T15:15:40,134 Created temporary directory: /tmp/pip-wheel-lqg8uk33
2024-02-14T15:15:40,138 Created temporary directory: /tmp/pip-ephem-wheel-cache-2u818kgq
2024-02-14T15:15:40,161 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-02-14T15:15:40,165 2 location(s) to search for versions of moleculekit:
2024-02-14T15:15:40,165 * https://pypi.org/simple/moleculekit/
2024-02-14T15:15:40,165 * https://www.piwheels.org/simple/moleculekit/
2024-02-14T15:15:40,165 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2024-02-14T15:15:40,166 Getting page https://pypi.org/simple/moleculekit/
2024-02-14T15:15:40,167 Found index url https://pypi.org/simple/
2024-02-14T15:15:40,221 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2024-02-14T15:15:40,262   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-14T15:15:40,262   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2024-02-14T15:15:40,262   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-14T15:15:40,263   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2024-02-14T15:15:40,263   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-14T15:15:40,263   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2024-02-14T15:15:40,263   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-14T15:15:40,264   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2024-02-14T15:15:40,264   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-14T15:15:40,264   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2024-02-14T15:15:40,264   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-14T15:15:40,265   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2024-02-14T15:15:40,265   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-14T15:15:40,265   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2024-02-14T15:15:40,265   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-14T15:15:40,266   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2024-02-14T15:15:40,266   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-14T15:15:40,266   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2024-02-14T15:15:40,266   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-14T15:15:40,266   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2024-02-14T15:15:40,267   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-14T15:15:40,267   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2024-02-14T15:15:40,267   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-14T15:15:40,267   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2024-02-14T15:15:40,268   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-14T15:15:40,268   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2024-02-14T15:15:40,268   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-14T15:15:40,268   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2024-02-14T15:15:40,268   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-14T15:15:40,269   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2024-02-14T15:15:40,269   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-14T15:15:40,269   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2024-02-14T15:15:40,269   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-14T15:15:40,270   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2024-02-14T15:15:40,270   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-14T15:15:40,270   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2024-02-14T15:15:40,270   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-14T15:15:40,271   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2024-02-14T15:15:40,271   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-14T15:15:40,271   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2024-02-14T15:15:40,271   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-14T15:15:40,271   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2024-02-14T15:15:40,272   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-14T15:15:40,272   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2024-02-14T15:15:40,272   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-14T15:15:40,272   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2024-02-14T15:15:40,273   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-14T15:15:40,273   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2024-02-14T15:15:40,273   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-14T15:15:40,273   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2024-02-14T15:15:40,274   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-14T15:15:40,274   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2024-02-14T15:15:40,274   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-14T15:15:40,274   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2024-02-14T15:15:40,274   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-14T15:15:40,275   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2024-02-14T15:15:40,275   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-14T15:15:40,275   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2024-02-14T15:15:40,275   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-14T15:15:40,276   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2024-02-14T15:15:40,276   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-14T15:15:40,276   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2024-02-14T15:15:40,276   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-14T15:15:40,277   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2024-02-14T15:15:40,277   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-14T15:15:40,277   Found link https://files.pythonhosted.org/packages/9d/1e/99ffa0d73766a735c3e91d591c92537e37b0024cd9b1d745c4e5933563c1/moleculekit-0.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.0
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2024-02-14T15:15:40,294   Found link https://files.pythonhosted.org/packages/5c/b2/944d529319db190e13234dd2337bff23b7a7c3c1a98b2a95eb08fc802530/moleculekit-0.9.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.7
2024-02-14T15:15:40,294   Found link https://files.pythonhosted.org/packages/42/0a/fbfa3d5c838ad716fdcb9b5ad55bddb6dccd74c5c281ac171be93b0f58e2/moleculekit-0.9.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.8
2024-02-14T15:15:40,294   Found link https://files.pythonhosted.org/packages/15/e0/93b4cc5e997a9e4e01fd39f00548f04e3f068961abba30f82fc04aa828ac/moleculekit-0.9.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.9
2024-02-14T15:15:40,295   Found link https://files.pythonhosted.org/packages/7f/58/2f04c5387c3c23e5c46f71741f7655c380b01c6f88aad7b5e945943c3fd1/moleculekit-0.9.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.12
2024-02-14T15:15:40,295   Found link https://files.pythonhosted.org/packages/b5/7c/fde4b7b8c9cd6683036e87727f341a0c9de5dae09f324dfa1bc2aa2a6de0/moleculekit-0.9.13.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.13
2024-02-14T15:15:40,295   Found link https://files.pythonhosted.org/packages/8e/f7/39a1290893da55d759e629ea6d9e2509fe6c3a06538d3f80cca590859647/moleculekit-0.9.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.14
2024-02-14T15:15:40,295   Found link https://files.pythonhosted.org/packages/02/6e/108b002ecb68c789d690492a02ced311cea625fdd642348e5cd75bd25fdb/moleculekit-0.9.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.15
2024-02-14T15:15:40,296   Found link https://files.pythonhosted.org/packages/62/51/f195a9d66dab99b8f6bd30fe5f65f63c65e65ded97c8fd20bf0cda822ee1/moleculekit-0.10.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.10.0
2024-02-14T15:15:40,296   Found link https://files.pythonhosted.org/packages/19/73/98bfd38e7d5823dc1d21ca3557d9f599b09926d252b22e215688677fe1eb/moleculekit-1.0.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.0
2024-02-14T15:15:40,296   Found link https://files.pythonhosted.org/packages/fc/d7/f3aa2dd40f165c1b67401587414deb33e80764835dfe2abb16b9b1d167bf/moleculekit-1.0.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.1
2024-02-14T15:15:40,296   Found link https://files.pythonhosted.org/packages/19/54/5ec72761331cfeea3e48a65f0dc30f7c21ec586f6d2b904339c262abafd8/moleculekit-1.0.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.2
2024-02-14T15:15:40,297   Found link https://files.pythonhosted.org/packages/f9/12/d8febc3aa79b72ffa0ea8efb978370f58db848fba030df47ae546bccb298/moleculekit-1.0.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.3
2024-02-14T15:15:40,297   Found link https://files.pythonhosted.org/packages/07/ab/e6c8a654329cb5fc7cf2d91d47934a6f53ec8b34276e96128f9961147a6a/moleculekit-1.0.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.4
2024-02-14T15:15:40,297   Found link https://files.pythonhosted.org/packages/d3/02/1e965b08593af843878d5bc3f7cc49cf61d4c9ca3a1e07e796923fbdb65e/moleculekit-1.0.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.5
2024-02-14T15:15:40,297   Found link https://files.pythonhosted.org/packages/28/2f/61d6e171e7b0309a94b3920b2743e5b6990d24a4870a5b1caf39f0e34338/moleculekit-1.0.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.6
2024-02-14T15:15:40,298   Found link https://files.pythonhosted.org/packages/6d/1e/bbd2d882b353e673f44897179ab0b6e76df9c2a657d25d47090dbdce76d3/moleculekit-1.0.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.7
2024-02-14T15:15:40,298   Found link https://files.pythonhosted.org/packages/61/45/acbe2272378c87f0796b1ebcba0673a13acc5ed87eb0d29fa16e1bfe54cf/moleculekit-1.0.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.8
2024-02-14T15:15:40,298   Found link https://files.pythonhosted.org/packages/72/48/3df4bcf3a3e5ca9c0e05e5486c0a7da3b7d6b3ff49830d473b6e72f02443/moleculekit-1.0.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.9
2024-02-14T15:15:40,298   Found link https://files.pythonhosted.org/packages/09/29/7e58bdf57dda487be8ab4c3719ebbf31db17ad65232fc9305a20eaa3c90c/moleculekit-1.1.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.0
2024-02-14T15:15:40,299   Found link https://files.pythonhosted.org/packages/3c/b6/64b6ae76e4b562d453b31fd28678232838949d56f1dafabd12531362de23/moleculekit-1.1.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.1
2024-02-14T15:15:40,299   Found link https://files.pythonhosted.org/packages/15/f8/fb94ef622b57eea44916cbed8a838efcbbd62c9732879ec4864c3abaf3d0/moleculekit-1.1.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.2
2024-02-14T15:15:40,299   Found link https://files.pythonhosted.org/packages/85/87/2264a91838fc8d44f1661b9ae462976e2b9b23f002591db7be9287f51d43/moleculekit-1.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.4
2024-02-14T15:15:40,299   Found link https://files.pythonhosted.org/packages/f4/53/156ee257b5781f55228ef884eec2b57cc368dbf37c4654315347af0e7a71/moleculekit-1.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.6
2024-02-14T15:15:40,300   Found link https://files.pythonhosted.org/packages/71/3c/15df00803c890b9d17390a31c60fa2c070a88e8a8c33c79ef10ddf023159/moleculekit-1.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.7
2024-02-14T15:15:40,300   Found link https://files.pythonhosted.org/packages/eb/2e/c50f42aefc5f3510073bd5059723baff738a5ee171174441586000c444dc/moleculekit-1.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.8
2024-02-14T15:15:40,300   Found link https://files.pythonhosted.org/packages/59/b9/6e9913fc67fa6321d5c441eb59a93e257f1fba383848a6bd645a7d427045/moleculekit-1.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.9
2024-02-14T15:15:40,300   Found link https://files.pythonhosted.org/packages/06/90/69685dad023515e231d8da7747793f33c497bb62496c4075e518f230da55/moleculekit-1.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.0
2024-02-14T15:15:40,301   Found link https://files.pythonhosted.org/packages/1a/07/36426e9820ea0ecff884e15fc9ebe413735a2b22a9212cdcbb9b62e56744/moleculekit-1.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.1
2024-02-14T15:15:40,301   Found link https://files.pythonhosted.org/packages/a1/56/2e1ac2fac4f566abf327baf326d17421047e363138c1c132a537a3eaf5ec/moleculekit-1.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.2
2024-02-14T15:15:40,301   Found link https://files.pythonhosted.org/packages/cb/28/b8fa8b94edf207d206627fcb18753ce3fad1450d7d5e5b052daa211b226b/moleculekit-1.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.4
2024-02-14T15:15:40,301   Found link https://files.pythonhosted.org/packages/cb/c9/8d7c9c427863a8e1be9e5487520f26a4ea63a34e735a3c5598f1e8b43cb4/moleculekit-1.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.5
2024-02-14T15:15:40,302   Found link https://files.pythonhosted.org/packages/39/b3/50e46e2780075c4adf93bba603ad047457f3d9cd70a77f4909776ec446b3/moleculekit-1.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.7
2024-02-14T15:15:40,302   Found link https://files.pythonhosted.org/packages/29/f1/10cd916b3024b2efe08c06413dff5938859e01c8bc671cde8bf070758031/moleculekit-1.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.8
2024-02-14T15:15:40,302   Found link https://files.pythonhosted.org/packages/47/55/207179562e46a3cba4a1cb813c1754be6c5a1664a11d1dcffe89b51c1ca4/moleculekit-1.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.9
2024-02-14T15:15:40,303   Found link https://files.pythonhosted.org/packages/2e/1c/a07b4d5f471fc90ba12e88e44675ddbf0ba4b0a658c2fc014491a7a27092/moleculekit-1.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.0
2024-02-14T15:15:40,303   Found link https://files.pythonhosted.org/packages/80/9b/d0375ea58246506494224acf560e8d2da623d1635047089316a01ab146a0/moleculekit-1.3.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.1
2024-02-14T15:15:40,303   Found link https://files.pythonhosted.org/packages/f9/f6/5808fddfaeeb3c021514c45f1b896329245c2e1c6218a86b9bc9f1904d7d/moleculekit-1.3.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.3
2024-02-14T15:15:40,303   Found link https://files.pythonhosted.org/packages/0f/87/45be2661273532639b9aef46f7335ef962ac0f4d5a022cad9fae46b3ed76/moleculekit-1.3.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.4
2024-02-14T15:15:40,304   Found link https://files.pythonhosted.org/packages/0b/c2/d5b36c664c2d4f8736b5dbf06b05d9efeeacd4d488125c8feb0e4efb3594/moleculekit-1.3.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.5
2024-02-14T15:15:40,304   Found link https://files.pythonhosted.org/packages/30/3d/7f0577f2f4fd87df9160c6c80c49fe7d025f40b9f25c6b6d9ed0bcd2341f/moleculekit-1.3.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.7
2024-02-14T15:15:40,304   Found link https://files.pythonhosted.org/packages/1a/fd/3788664397288c8169d713da13ae2419a0534a9ee826d1ce718811e27569/moleculekit-1.3.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.8
2024-02-14T15:15:40,305   Found link https://files.pythonhosted.org/packages/fe/a6/b9b3e9ec27de783731911f111354a9d1e6cd766e47aeff934b769a415311/moleculekit-1.3.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.9
2024-02-14T15:15:40,305   Found link https://files.pythonhosted.org/packages/fd/8d/5420b8fc8713c9a27e74eb85aab9b758169f739c0d6aca1540d73582aba6/moleculekit-1.4.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.0
2024-02-14T15:15:40,305   Found link https://files.pythonhosted.org/packages/68/7e/cd023ea3b0a765a65611a8b103d51dbb55fc97bb9df335095d520ad46deb/moleculekit-1.4.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.1
2024-02-14T15:15:40,305   Found link https://files.pythonhosted.org/packages/21/ce/d98ddf9106565632f876b1b853bb23c64534e65884b9d3d73208c7fe17e6/moleculekit-1.4.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.2
2024-02-14T15:15:40,306   Found link https://files.pythonhosted.org/packages/f9/12/68450058da1b4f39328ce41f22cfb5a38717147b3e624cb76b225318dd96/moleculekit-1.4.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.3
2024-02-14T15:15:40,306   Found link https://files.pythonhosted.org/packages/a1/9c/61a877e38393372a16746096dc836e3a24d0fe31240644258396f6ec1dd5/moleculekit-1.4.5-1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.5-1
2024-02-14T15:15:40,306   Found link https://files.pythonhosted.org/packages/65/2b/f8fbac2b196d899066e4d26b78e62adc1f2356734b3de63da153e9b18e44/moleculekit-1.4.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.6
2024-02-14T15:15:40,307   Found link https://files.pythonhosted.org/packages/6b/80/69b1d49f78060edafdb9a5e49080f189c6d72a7a2a83f2567f7abfaf9fcb/moleculekit-1.4.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.7
2024-02-14T15:15:40,307   Found link https://files.pythonhosted.org/packages/91/bd/4e692bc271e6a957732a20347e43f0388e12ab60df6717a178b628f18fce/moleculekit-1.4.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.8
2024-02-14T15:15:40,308   Found link https://files.pythonhosted.org/packages/0b/22/49372d8ecca8baa50e08ca3971786e207825556920bd5b19697d085bf681/moleculekit-1.4.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.9
2024-02-14T15:15:40,309   Found link https://files.pythonhosted.org/packages/3a/52/c87b6f8651063e38a723e8506788475ecf32f2b2e67fcf42739e8737f120/moleculekit-1.5.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.0
2024-02-14T15:15:40,309   Found link https://files.pythonhosted.org/packages/e9/64/50b82745c79e8f28fb8c1615e637221dceb4af565af8e785b04b5c9bd7f0/moleculekit-1.5.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.1
2024-02-14T15:15:40,310   Found link https://files.pythonhosted.org/packages/3d/18/e249854f20e449b9890eca08ef37ccdb87f719b6ac0db8e9d2ca9c4eb890/moleculekit-1.5.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.2
2024-02-14T15:15:40,310   Found link https://files.pythonhosted.org/packages/3f/e8/860f3b89afd29b5ba405ab028f3d49ac22e95557b6b906e475c2f6558df5/moleculekit-1.5.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.3
2024-02-14T15:15:40,311   Found link https://files.pythonhosted.org/packages/e7/1e/8f982d3446852e3778250fc8af491eb3ceaf081b891eb7a4936776dfe730/moleculekit-1.5.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.4
2024-02-14T15:15:40,311   Found link https://files.pythonhosted.org/packages/46/81/f7be4e086eb469d0fda5d9be51c6fe2107d39c4127f64218774c40f5923a/moleculekit-1.5.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.5
2024-02-14T15:15:40,312   Found link https://files.pythonhosted.org/packages/d1/99/5866f661f25b1168804a5c26ab38edd26a7239d91b84c13fb129c1f84ab6/moleculekit-1.5.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.6
2024-02-14T15:15:40,312   Found link https://files.pythonhosted.org/packages/25/45/e228ef66e7b03b1613382490f07c3db31c9713e3878eb9766781076b8209/moleculekit-1.5.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.7
2024-02-14T15:15:40,313   Found link https://files.pythonhosted.org/packages/5e/4a/8e20ee9556cfcdc8c51aac44a054b76db1b9abf8c83124f51521397f7673/moleculekit-1.5.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.8
2024-02-14T15:15:40,313   Found link https://files.pythonhosted.org/packages/00/79/eafaf1a45594ebe0f5e3e3a775bb8e4635dd46e63a048cc577a4e3c4c29b/moleculekit-1.6.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.0
2024-02-14T15:15:40,314   Found link https://files.pythonhosted.org/packages/c2/66/b802cbaa73639d3fb24d7aca0a21b932bd6b781103c3aa0662fd27dd64e0/moleculekit-1.6.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.1
2024-02-14T15:15:40,315   Found link https://files.pythonhosted.org/packages/01/31/1debf4b7c89e0060dc1f7d19ab348e627b9183890a8e443c1ee54ee3bd6c/moleculekit-1.6.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.4
2024-02-14T15:15:40,315   Found link https://files.pythonhosted.org/packages/d6/3a/77427acaba2c2b4670a4b94ce5cd161b60ac547e812a6337374265f3272d/moleculekit-1.6.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.5
2024-02-14T15:15:40,316   Found link https://files.pythonhosted.org/packages/75/c9/3ed46001d1cc28d02ee2ee30de3377bc39f9545ea0a7b7932b6c31770879/moleculekit-1.6.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.6
2024-02-14T15:15:40,316   Found link https://files.pythonhosted.org/packages/b0/eb/47f199ab494f4a3929e1265222e24dcfce4dc2dde54923d1be8e513bf765/moleculekit-1.6.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.7
2024-02-14T15:15:40,317   Found link https://files.pythonhosted.org/packages/02/62/8710bf8c331f6c5d3320bcd99ce1f53fd72c8ed39767e69fe09127926c58/moleculekit-1.6.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.8
2024-02-14T15:15:40,317   Found link https://files.pythonhosted.org/packages/bd/54/7eaec59ff225b186934cbe0ea2e709af1864cac674dc9c8f2e7cf2d8adeb/moleculekit-1.6.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.9
2024-02-14T15:15:40,318   Found link https://files.pythonhosted.org/packages/3d/e9/5d17d4e81b5894b9ace33d43b373881813b8a68b0a1365d7590990c5c370/moleculekit-1.7.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.0
2024-02-14T15:15:40,318   Found link https://files.pythonhosted.org/packages/4e/3a/29fb1aa0e3792fef88348885348370f39af453fb75d5505a208068d1c4ac/moleculekit-1.7.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.1
2024-02-14T15:15:40,319   Found link https://files.pythonhosted.org/packages/4a/13/dd6711d592d27e604c48830300f5596aafa1bbc479dc5eb49ed9797085eb/moleculekit-1.7.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.2
2024-02-14T15:15:40,319   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2024-02-14T15:15:40,320   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2024-02-14T15:15:40,320   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2024-02-14T15:15:40,321   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2024-02-14T15:15:40,322   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2024-02-14T15:15:40,322   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2024-02-14T15:15:40,323   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2024-02-14T15:15:40,323   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2024-02-14T15:15:40,324   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2024-02-14T15:15:40,324   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2024-02-14T15:15:40,325   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2024-02-14T15:15:40,325   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2024-02-14T15:15:40,326   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2024-02-14T15:15:40,327   Found link https://files.pythonhosted.org/packages/96/a3/11b655506ce842ebea0b6d4c86883a538095687cb7bc9c4a179420971bd7/moleculekit-1.8.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.1
2024-02-14T15:15:40,327   Found link https://files.pythonhosted.org/packages/9d/d3/ead35117c0f3b3b1be847d561ff31bf59dfde0c49982bff106a3cc3876f0/moleculekit-1.8.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.2
2024-02-14T15:15:40,328   Found link https://files.pythonhosted.org/packages/23/e8/3ebe2bfb667296b1c79d4e59fdfb487116bfd8bec579ca242eec7ecad0c2/moleculekit-1.8.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.3
2024-02-14T15:15:40,328   Found link https://files.pythonhosted.org/packages/6f/4d/4a0e90a65d79829ae0bec8d857de2f8b7e18b6d60e05daa99cdbed0061c0/moleculekit-1.8.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.4
2024-02-14T15:15:40,329   Found link https://files.pythonhosted.org/packages/15/bb/f88884d7710aeb6290c69f180df912ce73beb4975ceea9f58aa28250737c/moleculekit-1.8.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.5
2024-02-14T15:15:40,329   Found link https://files.pythonhosted.org/packages/e4/a8/ef9f25e6e42436ceaecfd8bb0aadbf40855976374a46b8cf8d55000fa0a8/moleculekit-1.8.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.6
2024-02-14T15:15:40,330   Found link https://files.pythonhosted.org/packages/67/c5/ed682f5ea9a16915b98612e0b274b50303bb912ccb71ab106247e01be8c2/moleculekit-1.8.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.7
2024-02-14T15:15:40,330   Found link https://files.pythonhosted.org/packages/23/cd/efd06d75f4a0e866e23156ca3c771c99a22bcfb5f2d1b0f42f853b9cfd27/moleculekit-1.8.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.10
2024-02-14T15:15:40,331   Found link https://files.pythonhosted.org/packages/d2/1a/935247798d3097c5093e33b026729b2e218fefd40f58c4b8b8bd3fcf93b4/moleculekit-1.8.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.13
2024-02-14T15:15:40,331   Found link https://files.pythonhosted.org/packages/b0/1c/de17759f3cbae5b6b06b60242724a93570b332f657fdeff9e582b6bda391/moleculekit-1.8.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.14
2024-02-14T15:15:40,332   Found link https://files.pythonhosted.org/packages/20/a3/7476dceb769dd7bb318d84590a372f1974e978cefb204da16f2b4d99a34e/moleculekit-1.8.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.15
2024-02-14T15:15:40,332   Found link https://files.pythonhosted.org/packages/ce/8d/e060616d8e4e03f56d544939f3ccea7f3d665038a66bbf57ba0bcd1f4711/moleculekit-1.8.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.17
2024-02-14T15:15:40,333   Found link https://files.pythonhosted.org/packages/36/66/5b4a8da5461b4547e9b3e58f477ddf359701865a7e2ca5b0348fa20f54ae/moleculekit-1.8.18.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.18
2024-02-14T15:15:40,333   Found link https://files.pythonhosted.org/packages/51/33/5a8b10a29ca3c7a893f4a727341611121bc5ec9e2e0004e0c0d4748e33f7/moleculekit-1.8.19.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.19
2024-02-14T15:15:40,334   Found link https://files.pythonhosted.org/packages/0c/02/8cb68afa12c5dac1a7e486d39e9017883f51e17c4fd781898edf79cd2f00/moleculekit-1.8.20.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.20
2024-02-14T15:15:40,334   Found link https://files.pythonhosted.org/packages/65/3f/75e14ea7f71098018974144579774255fc66d1b7f7dae2ff858a87aac1e7/moleculekit-1.8.21.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.21
2024-02-14T15:15:40,335 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2024-02-14T15:15:40,335 Getting page https://www.piwheels.org/simple/moleculekit/
2024-02-14T15:15:40,336 Found index url https://www.piwheels.org/simple/
2024-02-14T15:15:40,412 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
2024-02-14T15:15:40,496   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.21-cp311-cp311-linux_armv6l.whl#sha256=03de975f4606a6b37e60bcdb2357aa334c90c398875557283fe7c02b4f65dbc9 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-02-14T15:15:40,499   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.18-cp311-cp311-linux_armv6l.whl#sha256=a966bd50ec01a5adea3abe3aa5940589b8a1d256398679c0fc3a358184c88855 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-02-14T15:15:40,499   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.17-cp311-cp311-linux_armv6l.whl#sha256=15f81de7a2be989eb8a4355f7a80e7bab42b90d292983fcadc050212e84b6ae8 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-02-14T15:15:40,500   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.17-cp39-cp39-linux_armv7l.whl#sha256=c52f9eca095400d7d491afc702832a8dbfa71a6a46826bd4d01cd3808f7b3581 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-14T15:15:40,500   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.15-cp311-cp311-linux_armv6l.whl#sha256=99886361a57fcc65b6b75cf5cd232fa059aa1791112dc1122ce857c31fcc735c (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-14T15:15:40,500   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.15-cp311-cp311-linux_armv7l.whl#sha256=99886361a57fcc65b6b75cf5cd232fa059aa1791112dc1122ce857c31fcc735c (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-14T15:15:40,500   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.15-cp39-cp39-linux_armv6l.whl#sha256=20842a6d4c7f080f513b9a5e3b6b184036902d470d653a3b8cdd6fefaab51370 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-02-14T15:15:40,501   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.14-cp311-cp311-linux_armv6l.whl#sha256=8629ac0797c90996eccc556595395a73f694a991add5f87b742e90afa9657440 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-02-14T15:15:40,530   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv7l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,530   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv6l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,530   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv7l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,530   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,530   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv7l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,531   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv6l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,531   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,531   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,531   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,531   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,531   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,532   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,532   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,532   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,532   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,532   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,533   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,533   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,533   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,533   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,533   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,533   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,534   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,534   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,534   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
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2024-02-14T15:15:40,534   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,535   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,535   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,535   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,535   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,535   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,535   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,536   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,536   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,536   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,536   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,536   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,537   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,537   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,537   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,537   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,537   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,537   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,538   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,538   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,538   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,538   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,538   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,539   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,539   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,539   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,539   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,539   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,539   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,540   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv6l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,540   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,540   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,540   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,540   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv6l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,541   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv7l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,541   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv6l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,541   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv7l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,541   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv6l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,541   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv7l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,542   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv6l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,542   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv7l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,542   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv6l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,542   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv7l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,542   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv6l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,542   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv7l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,543   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv6l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,543   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv7l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,543   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv6l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,543   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv7l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,543   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv6l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,544   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv7l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,544   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv6l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,544   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv7l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,544   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv6l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,544   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv7l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,544   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv6l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,545   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv7l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,545   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv6l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,545   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv7l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,545   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv6l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,545   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv7l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,546   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv6l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,546   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv7l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
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2024-02-14T15:15:40,555   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.4-py3-none-any.whl#sha256=5784491ff294e145a00311f8239aaa0b92c12605db0508ee3e10469b80d4cadd (from https://www.piwheels.org/simple/moleculekit/)
2024-02-14T15:15:40,555 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2024-02-14T15:15:40,555 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2024-02-14T15:15:40,597 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2024-02-14T15:15:40,615 Collecting moleculekit==1.8.21
2024-02-14T15:15:40,617   Created temporary directory: /tmp/pip-unpack-e_d9r_34
2024-02-14T15:15:40,660   Downloading moleculekit-1.8.21.tar.gz (6.8 MB)
2024-02-14T15:15:43,142   Added moleculekit==1.8.21 from https://files.pythonhosted.org/packages/65/3f/75e14ea7f71098018974144579774255fc66d1b7f7dae2ff858a87aac1e7/moleculekit-1.8.21.tar.gz to build tracker '/tmp/pip-build-tracker-y751woyo'
2024-02-14T15:15:43,151   Created temporary directory: /tmp/pip-build-env-xn0n9va4
2024-02-14T15:15:43,160   Installing build dependencies: started
2024-02-14T15:15:43,161   Running command pip subprocess to install build dependencies
2024-02-14T15:15:44,354   Using pip 23.3.1 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9)
2024-02-14T15:15:44,879   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-02-14T15:15:46,310   Collecting setuptools
2024-02-14T15:15:46,325     Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.1.0-py3-none-any.whl (819 kB)
2024-02-14T15:15:47,313   Collecting numpy>=1.18.5
2024-02-14T15:15:47,332     Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.4-cp39-cp39-linux_armv7l.whl (5.6 MB)
2024-02-14T15:15:48,783   Collecting Cython>=0.29.21
2024-02-14T15:15:48,784     Obtaining dependency information for Cython>=0.29.21 from https://files.pythonhosted.org/packages/e3/7f/f584f5d15323feb897d42ef0e9d910649e2150d7a30cf7e7a8cc1d236e6f/Cython-3.0.8-py2.py3-none-any.whl.metadata
2024-02-14T15:15:48,791     Using cached Cython-3.0.8-py2.py3-none-any.whl.metadata (3.2 kB)
2024-02-14T15:15:48,878   Collecting toml
2024-02-14T15:15:48,904     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2024-02-14T15:15:49,095   Collecting versioneer==0.28 (from versioneer[toml]==0.28)
2024-02-14T15:15:49,114     Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2024-02-14T15:15:49,326   Collecting tomli (from versioneer[toml]==0.28)
2024-02-14T15:15:49,345     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2024-02-14T15:15:49,552   Using cached Cython-3.0.8-py2.py3-none-any.whl (1.2 MB)
2024-02-14T15:15:51,186   Installing collected packages: versioneer, tomli, toml, setuptools, numpy, Cython
2024-02-14T15:15:51,223     Creating /tmp/pip-build-env-xn0n9va4/overlay/bin
2024-02-14T15:15:51,225     changing mode of /tmp/pip-build-env-xn0n9va4/overlay/bin/versioneer to 755
2024-02-14T15:16:01,342     changing mode of /tmp/pip-build-env-xn0n9va4/overlay/bin/f2py to 755
2024-02-14T15:16:04,032     changing mode of /tmp/pip-build-env-xn0n9va4/overlay/bin/cygdb to 755
2024-02-14T15:16:04,034     changing mode of /tmp/pip-build-env-xn0n9va4/overlay/bin/cython to 755
2024-02-14T15:16:04,036     changing mode of /tmp/pip-build-env-xn0n9va4/overlay/bin/cythonize to 755
2024-02-14T15:16:04,062   ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
2024-02-14T15:16:04,062   scipy 1.8.1 requires numpy<1.25.0,>=1.17.3, but you have numpy 1.26.4 which is incompatible.
2024-02-14T15:16:04,063   Successfully installed Cython-3.0.8 numpy-1.26.4 setuptools-69.1.0 toml-0.10.2 tomli-2.0.1 versioneer-0.28

2024-02-14T15:16:04,245   [notice] A new release of pip is available: 23.3.1 -> 24.0
2024-02-14T15:16:04,245   [notice] To update, run: python3 -m pip install --upgrade pip
2024-02-14T15:16:04,685   Installing build dependencies: finished with status 'done'
2024-02-14T15:16:04,690   Getting requirements to build wheel: started
2024-02-14T15:16:04,691   Running command Getting requirements to build wheel
2024-02-14T15:17:21,244   warning: moleculekit/wrapping/wrapping.pyx:47:4: Unreachable code
2024-02-14T15:17:39,957   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-14T15:17:39,957   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-14T15:17:39,958   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-14T15:17:39,958   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-14T15:17:39,958   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-14T15:17:39,958   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-14T15:17:39,958   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-14T15:17:39,958   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-14T15:17:39,958   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-14T15:17:39,959   Compiling moleculekit/cython_utils/cython_utils.pyx because it depends on /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-14T15:17:39,959   Compiling moleculekit/fileformats/xtc/xtc.pyx because it depends on /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-02-14T15:17:39,959   Compiling moleculekit/fileformats/xtc/trr.pyx because it depends on /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-02-14T15:17:39,959   Compiling moleculekit/fileformats/dcd/dcd.pyx because it depends on /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-02-14T15:17:39,959   Compiling moleculekit/fileformats/binpos/binpos.pyx because it depends on /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-02-14T15:17:39,960   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-14T15:17:39,960   [ 1/15] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
2024-02-14T15:17:39,960   [ 2/15] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx
2024-02-14T15:17:39,960   [ 3/15] Cythonizing moleculekit/cython_utils/cython_utils.pyx
2024-02-14T15:17:39,960   [ 4/15] Cythonizing moleculekit/distance_utils/distance_utils.pyx
2024-02-14T15:17:39,960   [ 5/15] Cythonizing moleculekit/fileformats/dcd/dcd.pyx
2024-02-14T15:17:39,960   [ 6/15] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx
2024-02-14T15:17:39,961   [ 7/15] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx
2024-02-14T15:17:39,961   [ 8/15] Cythonizing moleculekit/interactions/pipi/pipi.pyx
2024-02-14T15:17:39,961   [ 9/15] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx
2024-02-14T15:17:39,961   [10/15] Cythonizing moleculekit/occupancy_utils/occupancy_utils.pyx
2024-02-14T15:17:39,961   [11/15] Cythonizing moleculekit/tmalign/tmalign_util.pyx
2024-02-14T15:17:39,961   [12/15] Cythonizing moleculekit/wrapping/wrapping.pyx
2024-02-14T15:17:39,962   [13/15] Cythonizing moleculekit/fileformats/binpos/binpos.pyx
2024-02-14T15:17:39,962   [14/15] Cythonizing moleculekit/fileformats/xtc/trr.pyx
2024-02-14T15:17:39,962   [15/15] Cythonizing moleculekit/fileformats/xtc/xtc.pyx
2024-02-14T15:17:40,250   running egg_info
2024-02-14T15:17:40,257   writing moleculekit.egg-info/PKG-INFO
2024-02-14T15:17:40,260   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-02-14T15:17:40,262   writing requirements to moleculekit.egg-info/requires.txt
2024-02-14T15:17:40,264   writing top-level names to moleculekit.egg-info/top_level.txt
2024-02-14T15:17:40,295   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,295   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,295   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,295   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,295   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,296   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,296   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,296   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,296   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,296   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,296   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,296   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,296   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,297   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,297   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,297   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,297   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,297   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,297   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,297   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,298   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,298   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,298   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,298   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,298   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,298   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,298   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,298   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,299   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,299   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,299   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,299   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,299   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,299   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,299   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,299   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,300   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,300   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,300   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,300   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,300   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,300   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,300   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,300   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,301   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,301   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,301   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,301   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,301   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,301   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,301   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,301   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,302   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,302   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,302   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,302   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,302   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,303   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,303   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,303   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,304   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,305   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,305   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,305   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,305   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,306   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,306   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,306   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,306   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,307   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,308   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,308   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,308   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,308   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,308   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:40,320   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-02-14T15:17:40,358   reading manifest template 'MANIFEST.in'
2024-02-14T15:17:40,638   no previously-included directories found matching 'moleculekit/test-data'
2024-02-14T15:17:40,639   no previously-included directories found matching 'moleculekit/tests'
2024-02-14T15:17:40,640   no previously-included directories found matching 'package'
2024-02-14T15:17:40,640   adding license file 'LICENSE'
2024-02-14T15:17:40,659   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-02-14T15:17:41,724   Getting requirements to build wheel: finished with status 'done'
2024-02-14T15:17:41,739   Installing backend dependencies: started
2024-02-14T15:17:41,740   Running command pip subprocess to install backend dependencies
2024-02-14T15:17:43,017   Using pip 23.3.1 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9)
2024-02-14T15:17:43,599   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-02-14T15:17:43,943   Collecting wheel
2024-02-14T15:17:43,960     Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB)
2024-02-14T15:17:45,347   Installing collected packages: wheel
2024-02-14T15:17:45,574     Creating /tmp/pip-build-env-xn0n9va4/normal/bin
2024-02-14T15:17:45,576     changing mode of /tmp/pip-build-env-xn0n9va4/normal/bin/wheel to 755
2024-02-14T15:17:45,589   Successfully installed wheel-0.42.0

2024-02-14T15:17:45,773   [notice] A new release of pip is available: 23.3.1 -> 24.0
2024-02-14T15:17:45,773   [notice] To update, run: python3 -m pip install --upgrade pip
2024-02-14T15:17:45,989   Installing backend dependencies: finished with status 'done'
2024-02-14T15:17:45,992   Created temporary directory: /tmp/pip-modern-metadata-ib2sq1x7
2024-02-14T15:17:45,995   Preparing metadata (pyproject.toml): started
2024-02-14T15:17:45,996   Running command Preparing metadata (pyproject.toml)
2024-02-14T15:17:48,467   running dist_info
2024-02-14T15:17:48,469   creating /tmp/pip-modern-metadata-ib2sq1x7/moleculekit.egg-info
2024-02-14T15:17:48,478   writing /tmp/pip-modern-metadata-ib2sq1x7/moleculekit.egg-info/PKG-INFO
2024-02-14T15:17:48,482   writing dependency_links to /tmp/pip-modern-metadata-ib2sq1x7/moleculekit.egg-info/dependency_links.txt
2024-02-14T15:17:48,485   writing requirements to /tmp/pip-modern-metadata-ib2sq1x7/moleculekit.egg-info/requires.txt
2024-02-14T15:17:48,486   writing top-level names to /tmp/pip-modern-metadata-ib2sq1x7/moleculekit.egg-info/top_level.txt
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2024-02-14T15:17:48,527   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,527   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,528   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,528   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,528   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,529   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
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2024-02-14T15:17:48,529   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,530   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,530   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,530   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,531   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,531   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,531   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,531   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,531   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,531   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,532   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,532   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,532   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,532   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,532   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,532   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,532   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,532   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,533   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,533   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,533   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,533   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,533   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,533   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,533   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,534   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,534   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,534   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,535   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,535   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,535   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,535   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,536   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,537   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,537   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,537   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,537   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,538   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,538   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,538   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,538   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,538   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,539   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,539   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,539   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,539   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,540   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:48,547   reading manifest file '/tmp/pip-modern-metadata-ib2sq1x7/moleculekit.egg-info/SOURCES.txt'
2024-02-14T15:17:48,550   reading manifest template 'MANIFEST.in'
2024-02-14T15:17:48,838   no previously-included directories found matching 'moleculekit/test-data'
2024-02-14T15:17:48,839   no previously-included directories found matching 'moleculekit/tests'
2024-02-14T15:17:48,840   no previously-included directories found matching 'package'
2024-02-14T15:17:48,840   adding license file 'LICENSE'
2024-02-14T15:17:48,854   writing manifest file '/tmp/pip-modern-metadata-ib2sq1x7/moleculekit.egg-info/SOURCES.txt'
2024-02-14T15:17:48,863   creating '/tmp/pip-modern-metadata-ib2sq1x7/moleculekit-1.8.21.dist-info'
2024-02-14T15:17:49,062   Preparing metadata (pyproject.toml): finished with status 'done'
2024-02-14T15:17:49,069   Source in /tmp/pip-wheel-lqg8uk33/moleculekit_d77927d722604cb499bf8f1d13f2c279 has version 1.8.21, which satisfies requirement moleculekit==1.8.21 from https://files.pythonhosted.org/packages/65/3f/75e14ea7f71098018974144579774255fc66d1b7f7dae2ff858a87aac1e7/moleculekit-1.8.21.tar.gz
2024-02-14T15:17:49,070   Removed moleculekit==1.8.21 from https://files.pythonhosted.org/packages/65/3f/75e14ea7f71098018974144579774255fc66d1b7f7dae2ff858a87aac1e7/moleculekit-1.8.21.tar.gz from build tracker '/tmp/pip-build-tracker-y751woyo'
2024-02-14T15:17:49,076 Created temporary directory: /tmp/pip-unpack-sswngcuu
2024-02-14T15:17:49,077 Created temporary directory: /tmp/pip-unpack-kn18eokj
2024-02-14T15:17:49,085 Building wheels for collected packages: moleculekit
2024-02-14T15:17:49,090   Created temporary directory: /tmp/pip-wheel-6_wuic5n
2024-02-14T15:17:49,090   Destination directory: /tmp/pip-wheel-6_wuic5n
2024-02-14T15:17:49,093   Building wheel for moleculekit (pyproject.toml): started
2024-02-14T15:17:49,094   Running command Building wheel for moleculekit (pyproject.toml)
2024-02-14T15:17:51,380   running bdist_wheel
2024-02-14T15:17:51,399   running build
2024-02-14T15:17:51,399   running build_py
2024-02-14T15:17:51,407   creating build
2024-02-14T15:17:51,407   creating build/lib.linux-armv7l-cpython-39
2024-02-14T15:17:51,408   creating build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-14T15:17:51,409   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-14T15:17:51,412   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
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2024-02-14T15:17:51,415   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-14T15:17:51,417   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit
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2024-02-14T15:17:51,421   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-14T15:17:51,423   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-14T15:17:51,424   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-14T15:17:51,426   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-14T15:17:51,428   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
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2024-02-14T15:17:51,434   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-14T15:17:51,436   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-14T15:17:51,438   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-14T15:17:51,440   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-14T15:17:51,442   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-14T15:17:51,445   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-14T15:17:51,448   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-14T15:17:51,452   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-14T15:17:51,454   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-14T15:17:51,457   creating build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-14T15:17:51,458   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-14T15:17:51,461   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-14T15:17:51,463   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-14T15:17:51,465   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-14T15:17:51,467   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-14T15:17:51,469   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-14T15:17:51,472   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-14T15:17:51,475   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-14T15:17:51,477   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-14T15:17:51,478   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-14T15:17:51,480   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-14T15:17:51,483   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-14T15:17:51,486   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-14T15:17:51,488   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-14T15:17:51,490   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-14T15:17:51,493   creating build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-02-14T15:17:51,493   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-02-14T15:17:51,497   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-02-14T15:17:51,499   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-02-14T15:17:51,502   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-02-14T15:17:51,505   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-02-14T15:17:51,507   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-02-14T15:17:51,510   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-02-14T15:17:51,511   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-02-14T15:17:51,513   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-02-14T15:17:51,514   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-02-14T15:17:51,517   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-02-14T15:17:51,520   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2024-02-14T15:17:51,521   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2024-02-14T15:17:51,523   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-02-14T15:17:51,524   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-02-14T15:17:51,526   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-02-14T15:17:51,528   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-02-14T15:17:51,530   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-02-14T15:17:51,532   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-02-14T15:17:51,534   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-02-14T15:17:51,538   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-02-14T15:17:51,539   copying moleculekit/fileformats/utils.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-02-14T15:17:51,541   copying moleculekit/fileformats/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-02-14T15:17:51,543   copying moleculekit/fileformats/netcdf.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-02-14T15:17:51,547   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-14T15:17:51,548   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-14T15:17:51,551   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-14T15:17:51,553   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-14T15:17:51,556   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-14T15:17:51,558   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-14T15:17:51,561   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-14T15:17:51,563   copying moleculekit/tools/modelling.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-14T15:17:51,565   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-14T15:17:51,567   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-14T15:17:51,569   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-14T15:17:51,571   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-14T15:17:51,573   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-14T15:17:51,576   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-14T15:17:51,578   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-14T15:17:51,581   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-02-14T15:17:51,582   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-02-14T15:17:51,584   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-02-14T15:17:51,586   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-02-14T15:17:51,587   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-02-14T15:17:51,590   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-02-14T15:17:51,591   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-02-14T15:17:51,593   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-02-14T15:17:51,596   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-02-14T15:17:51,598   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-02-14T15:17:51,601   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-02-14T15:17:51,602   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-02-14T15:17:51,603   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-02-14T15:17:51,606   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-02-14T15:17:51,607   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-02-14T15:17:51,610   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-02-14T15:17:51,612   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-02-14T15:17:51,614   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-02-14T15:17:51,617   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-02-14T15:17:51,618   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-02-14T15:17:51,619   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-02-14T15:17:51,623   running egg_info
2024-02-14T15:17:51,627   writing moleculekit.egg-info/PKG-INFO
2024-02-14T15:17:51,631   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-02-14T15:17:51,633   writing requirements to moleculekit.egg-info/requires.txt
2024-02-14T15:17:51,635   writing top-level names to moleculekit.egg-info/top_level.txt
2024-02-14T15:17:51,654   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,655   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,655   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,656   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,656   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,656   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,657   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,657   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,657   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,658   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,658   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,658   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,659   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,659   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,659   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,660   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,660   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,660   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,661   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,661   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,661   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,662   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,662   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,662   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,663   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,663   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,663   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,664   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,664   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,664   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,665   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,665   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,665   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,666   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,666   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,666   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,667   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,667   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,667   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,667   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,668   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,668   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,668   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,669   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,669   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,669   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,670   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,670   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,670   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,671   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,671   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,671   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,672   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,672   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,672   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,673   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,673   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,674   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,674   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,674   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,676   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,677   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,677   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,677   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,678   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,678   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,679   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,679   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,679   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,680   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,681   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,681   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,682   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,682   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,682   dependency /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-14T15:17:51,689   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-02-14T15:17:51,699   reading manifest template 'MANIFEST.in'
2024-02-14T15:17:51,983   no previously-included directories found matching 'moleculekit/test-data'
2024-02-14T15:17:51,985   no previously-included directories found matching 'moleculekit/tests'
2024-02-14T15:17:51,986   no previously-included directories found matching 'package'
2024-02-14T15:17:51,987   adding license file 'LICENSE'
2024-02-14T15:17:52,005   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-02-14T15:17:52,017   /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2024-02-14T15:17:52,017   !!

2024-02-14T15:17:52,017           ********************************************************************************
2024-02-14T15:17:52,017           ############################
2024-02-14T15:17:52,017           # Package would be ignored #
2024-02-14T15:17:52,017           ############################
2024-02-14T15:17:52,017           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2024-02-14T15:17:52,018           but it is absent from setuptools' `packages` configuration.

2024-02-14T15:17:52,018           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-14T15:17:52,018           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2024-02-14T15:17:52,018           to the `packages` configuration field.

2024-02-14T15:17:52,018           Alternatively, you can also rely on setuptools' discovery methods
2024-02-14T15:17:52,018           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-14T15:17:52,018           instead of `find_packages(...)`/`find:`).

2024-02-14T15:17:52,019           You can read more about "package discovery" on setuptools documentation page:

2024-02-14T15:17:52,019           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-14T15:17:52,019           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2024-02-14T15:17:52,019           already explicitly excluding 'moleculekit.atomselect_utils' via
2024-02-14T15:17:52,019           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-14T15:17:52,019           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-14T15:17:52,020           combination with a more fine grained `package-data` configuration.

2024-02-14T15:17:52,020           You can read more about "package data files" on setuptools documentation page:

2024-02-14T15:17:52,020           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-14T15:17:52,020           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-14T15:17:52,020                 even if it does not contain any `.py` files.
2024-02-14T15:17:52,021                 On the other hand, currently there is no concept of package data
2024-02-14T15:17:52,021                 directory, all directories are treated like packages.
2024-02-14T15:17:52,021           ********************************************************************************

2024-02-14T15:17:52,021   !!
2024-02-14T15:17:52,021     check.warn(importable)
2024-02-14T15:17:52,021   /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2024-02-14T15:17:52,022   !!

2024-02-14T15:17:52,022           ********************************************************************************
2024-02-14T15:17:52,022           ############################
2024-02-14T15:17:52,022           # Package would be ignored #
2024-02-14T15:17:52,022           ############################
2024-02-14T15:17:52,022           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2024-02-14T15:17:52,022           but it is absent from setuptools' `packages` configuration.

2024-02-14T15:17:52,023           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-14T15:17:52,023           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2024-02-14T15:17:52,023           to the `packages` configuration field.

2024-02-14T15:17:52,023           Alternatively, you can also rely on setuptools' discovery methods
2024-02-14T15:17:52,023           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-14T15:17:52,023           instead of `find_packages(...)`/`find:`).

2024-02-14T15:17:52,024           You can read more about "package discovery" on setuptools documentation page:

2024-02-14T15:17:52,024           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-14T15:17:52,024           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2024-02-14T15:17:52,024           already explicitly excluding 'moleculekit.bondguesser_utils' via
2024-02-14T15:17:52,024           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-14T15:17:52,024           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-14T15:17:52,024           combination with a more fine grained `package-data` configuration.

2024-02-14T15:17:52,025           You can read more about "package data files" on setuptools documentation page:

2024-02-14T15:17:52,025           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-14T15:17:52,025           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-14T15:17:52,025                 even if it does not contain any `.py` files.
2024-02-14T15:17:52,025                 On the other hand, currently there is no concept of package data
2024-02-14T15:17:52,026                 directory, all directories are treated like packages.
2024-02-14T15:17:52,026           ********************************************************************************

2024-02-14T15:17:52,026   !!
2024-02-14T15:17:52,026     check.warn(importable)
2024-02-14T15:17:52,026   /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.cython_utils' is absent from the `packages` configuration.
2024-02-14T15:17:52,026   !!

2024-02-14T15:17:52,027           ********************************************************************************
2024-02-14T15:17:52,027           ############################
2024-02-14T15:17:52,027           # Package would be ignored #
2024-02-14T15:17:52,027           ############################
2024-02-14T15:17:52,027           Python recognizes 'moleculekit.cython_utils' as an importable package[^1],
2024-02-14T15:17:52,027           but it is absent from setuptools' `packages` configuration.

2024-02-14T15:17:52,027           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-14T15:17:52,028           package, please make sure that 'moleculekit.cython_utils' is explicitly added
2024-02-14T15:17:52,028           to the `packages` configuration field.

2024-02-14T15:17:52,028           Alternatively, you can also rely on setuptools' discovery methods
2024-02-14T15:17:52,028           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-14T15:17:52,028           instead of `find_packages(...)`/`find:`).

2024-02-14T15:17:52,028           You can read more about "package discovery" on setuptools documentation page:

2024-02-14T15:17:52,029           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-14T15:17:52,029           If you don't want 'moleculekit.cython_utils' to be distributed and are
2024-02-14T15:17:52,029           already explicitly excluding 'moleculekit.cython_utils' via
2024-02-14T15:17:52,029           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-14T15:17:52,029           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-14T15:17:52,029           combination with a more fine grained `package-data` configuration.

2024-02-14T15:17:52,029           You can read more about "package data files" on setuptools documentation page:

2024-02-14T15:17:52,030           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-14T15:17:52,030           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-14T15:17:52,030                 even if it does not contain any `.py` files.
2024-02-14T15:17:52,030                 On the other hand, currently there is no concept of package data
2024-02-14T15:17:52,030                 directory, all directories are treated like packages.
2024-02-14T15:17:52,030           ********************************************************************************

2024-02-14T15:17:52,031   !!
2024-02-14T15:17:52,031     check.warn(importable)
2024-02-14T15:17:52,031   /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2024-02-14T15:17:52,031   !!

2024-02-14T15:17:52,031           ********************************************************************************
2024-02-14T15:17:52,031           ############################
2024-02-14T15:17:52,032           # Package would be ignored #
2024-02-14T15:17:52,032           ############################
2024-02-14T15:17:52,032           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2024-02-14T15:17:52,032           but it is absent from setuptools' `packages` configuration.

2024-02-14T15:17:52,032           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-14T15:17:52,032           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2024-02-14T15:17:52,032           to the `packages` configuration field.

2024-02-14T15:17:52,032           Alternatively, you can also rely on setuptools' discovery methods
2024-02-14T15:17:52,033           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-14T15:17:52,033           instead of `find_packages(...)`/`find:`).

2024-02-14T15:17:52,033           You can read more about "package discovery" on setuptools documentation page:

2024-02-14T15:17:52,033           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-14T15:17:52,033           If you don't want 'moleculekit.distance_utils' to be distributed and are
2024-02-14T15:17:52,033           already explicitly excluding 'moleculekit.distance_utils' via
2024-02-14T15:17:52,034           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-14T15:17:52,034           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-14T15:17:52,034           combination with a more fine grained `package-data` configuration.

2024-02-14T15:17:52,034           You can read more about "package data files" on setuptools documentation page:

2024-02-14T15:17:52,034           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-14T15:17:52,035           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-14T15:17:52,035                 even if it does not contain any `.py` files.
2024-02-14T15:17:52,035                 On the other hand, currently there is no concept of package data
2024-02-14T15:17:52,035                 directory, all directories are treated like packages.
2024-02-14T15:17:52,035           ********************************************************************************

2024-02-14T15:17:52,035   !!
2024-02-14T15:17:52,035     check.warn(importable)
2024-02-14T15:17:52,035   /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos' is absent from the `packages` configuration.
2024-02-14T15:17:52,036   !!

2024-02-14T15:17:52,036           ********************************************************************************
2024-02-14T15:17:52,036           ############################
2024-02-14T15:17:52,036           # Package would be ignored #
2024-02-14T15:17:52,036           ############################
2024-02-14T15:17:52,036           Python recognizes 'moleculekit.fileformats.binpos' as an importable package[^1],
2024-02-14T15:17:52,036           but it is absent from setuptools' `packages` configuration.

2024-02-14T15:17:52,037           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-14T15:17:52,037           package, please make sure that 'moleculekit.fileformats.binpos' is explicitly added
2024-02-14T15:17:52,037           to the `packages` configuration field.

2024-02-14T15:17:52,037           Alternatively, you can also rely on setuptools' discovery methods
2024-02-14T15:17:52,037           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-14T15:17:52,037           instead of `find_packages(...)`/`find:`).

2024-02-14T15:17:52,037           You can read more about "package discovery" on setuptools documentation page:

2024-02-14T15:17:52,038           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-14T15:17:52,038           If you don't want 'moleculekit.fileformats.binpos' to be distributed and are
2024-02-14T15:17:52,038           already explicitly excluding 'moleculekit.fileformats.binpos' via
2024-02-14T15:17:52,038           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-14T15:17:52,038           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-14T15:17:52,038           combination with a more fine grained `package-data` configuration.

2024-02-14T15:17:52,038           You can read more about "package data files" on setuptools documentation page:

2024-02-14T15:17:52,039           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-14T15:17:52,039           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-14T15:17:52,039                 even if it does not contain any `.py` files.
2024-02-14T15:17:52,039                 On the other hand, currently there is no concept of package data
2024-02-14T15:17:52,039                 directory, all directories are treated like packages.
2024-02-14T15:17:52,039           ********************************************************************************

2024-02-14T15:17:52,040   !!
2024-02-14T15:17:52,040     check.warn(importable)
2024-02-14T15:17:52,040   /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos.include' is absent from the `packages` configuration.
2024-02-14T15:17:52,040   !!

2024-02-14T15:17:52,040           ********************************************************************************
2024-02-14T15:17:52,040           ############################
2024-02-14T15:17:52,040           # Package would be ignored #
2024-02-14T15:17:52,041           ############################
2024-02-14T15:17:52,041           Python recognizes 'moleculekit.fileformats.binpos.include' as an importable package[^1],
2024-02-14T15:17:52,041           but it is absent from setuptools' `packages` configuration.

2024-02-14T15:17:52,041           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-14T15:17:52,041           package, please make sure that 'moleculekit.fileformats.binpos.include' is explicitly added
2024-02-14T15:17:52,041           to the `packages` configuration field.

2024-02-14T15:17:52,041           Alternatively, you can also rely on setuptools' discovery methods
2024-02-14T15:17:52,041           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-14T15:17:52,042           instead of `find_packages(...)`/`find:`).

2024-02-14T15:17:52,042           You can read more about "package discovery" on setuptools documentation page:

2024-02-14T15:17:52,042           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-14T15:17:52,042           If you don't want 'moleculekit.fileformats.binpos.include' to be distributed and are
2024-02-14T15:17:52,042           already explicitly excluding 'moleculekit.fileformats.binpos.include' via
2024-02-14T15:17:52,042           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-14T15:17:52,043           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-14T15:17:52,043           combination with a more fine grained `package-data` configuration.

2024-02-14T15:17:52,043           You can read more about "package data files" on setuptools documentation page:

2024-02-14T15:17:52,043           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-14T15:17:52,043           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-14T15:17:52,044                 even if it does not contain any `.py` files.
2024-02-14T15:17:52,044                 On the other hand, currently there is no concept of package data
2024-02-14T15:17:52,044                 directory, all directories are treated like packages.
2024-02-14T15:17:52,044           ********************************************************************************

2024-02-14T15:17:52,044   !!
2024-02-14T15:17:52,044     check.warn(importable)
2024-02-14T15:17:52,044   /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos.src' is absent from the `packages` configuration.
2024-02-14T15:17:52,044   !!

2024-02-14T15:17:52,045           ********************************************************************************
2024-02-14T15:17:52,045           ############################
2024-02-14T15:17:52,045           # Package would be ignored #
2024-02-14T15:17:52,045           ############################
2024-02-14T15:17:52,045           Python recognizes 'moleculekit.fileformats.binpos.src' as an importable package[^1],
2024-02-14T15:17:52,045           but it is absent from setuptools' `packages` configuration.

2024-02-14T15:17:52,045           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-14T15:17:52,046           package, please make sure that 'moleculekit.fileformats.binpos.src' is explicitly added
2024-02-14T15:17:52,046           to the `packages` configuration field.

2024-02-14T15:17:52,046           Alternatively, you can also rely on setuptools' discovery methods
2024-02-14T15:17:52,046           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-14T15:17:52,046           instead of `find_packages(...)`/`find:`).

2024-02-14T15:17:52,046           You can read more about "package discovery" on setuptools documentation page:

2024-02-14T15:17:52,047           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-14T15:17:52,047           If you don't want 'moleculekit.fileformats.binpos.src' to be distributed and are
2024-02-14T15:17:52,047           already explicitly excluding 'moleculekit.fileformats.binpos.src' via
2024-02-14T15:17:52,047           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-14T15:17:52,047           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-14T15:17:52,047           combination with a more fine grained `package-data` configuration.

2024-02-14T15:17:52,047           You can read more about "package data files" on setuptools documentation page:

2024-02-14T15:17:52,048           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-14T15:17:52,048           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-14T15:17:52,048                 even if it does not contain any `.py` files.
2024-02-14T15:17:52,048                 On the other hand, currently there is no concept of package data
2024-02-14T15:17:52,048                 directory, all directories are treated like packages.
2024-02-14T15:17:52,048           ********************************************************************************

2024-02-14T15:17:52,049   !!
2024-02-14T15:17:52,049     check.warn(importable)
2024-02-14T15:17:52,049   /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd' is absent from the `packages` configuration.
2024-02-14T15:17:52,049   !!

2024-02-14T15:17:52,049           ********************************************************************************
2024-02-14T15:17:52,049           ############################
2024-02-14T15:17:52,049           # Package would be ignored #
2024-02-14T15:17:52,049           ############################
2024-02-14T15:17:52,050           Python recognizes 'moleculekit.fileformats.dcd' as an importable package[^1],
2024-02-14T15:17:52,050           but it is absent from setuptools' `packages` configuration.

2024-02-14T15:17:52,050           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-14T15:17:52,050           package, please make sure that 'moleculekit.fileformats.dcd' is explicitly added
2024-02-14T15:17:52,050           to the `packages` configuration field.

2024-02-14T15:17:52,051           Alternatively, you can also rely on setuptools' discovery methods
2024-02-14T15:17:52,051           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-14T15:17:52,051           instead of `find_packages(...)`/`find:`).

2024-02-14T15:17:52,051           You can read more about "package discovery" on setuptools documentation page:

2024-02-14T15:17:52,051           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-14T15:17:52,051           If you don't want 'moleculekit.fileformats.dcd' to be distributed and are
2024-02-14T15:17:52,052           already explicitly excluding 'moleculekit.fileformats.dcd' via
2024-02-14T15:17:52,052           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-14T15:17:52,052           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-14T15:17:52,052           combination with a more fine grained `package-data` configuration.

2024-02-14T15:17:52,052           You can read more about "package data files" on setuptools documentation page:

2024-02-14T15:17:52,052           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-14T15:17:52,053           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-14T15:17:52,053                 even if it does not contain any `.py` files.
2024-02-14T15:17:52,053                 On the other hand, currently there is no concept of package data
2024-02-14T15:17:52,053                 directory, all directories are treated like packages.
2024-02-14T15:17:52,053           ********************************************************************************

2024-02-14T15:17:52,053   !!
2024-02-14T15:17:52,053     check.warn(importable)
2024-02-14T15:17:52,053   /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd.include' is absent from the `packages` configuration.
2024-02-14T15:17:52,054   !!

2024-02-14T15:17:52,054           ********************************************************************************
2024-02-14T15:17:52,054           ############################
2024-02-14T15:17:52,054           # Package would be ignored #
2024-02-14T15:17:52,054           ############################
2024-02-14T15:17:52,054           Python recognizes 'moleculekit.fileformats.dcd.include' as an importable package[^1],
2024-02-14T15:17:52,054           but it is absent from setuptools' `packages` configuration.

2024-02-14T15:17:52,055           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-14T15:17:52,055           package, please make sure that 'moleculekit.fileformats.dcd.include' is explicitly added
2024-02-14T15:17:52,055           to the `packages` configuration field.

2024-02-14T15:17:52,055           Alternatively, you can also rely on setuptools' discovery methods
2024-02-14T15:17:52,055           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-14T15:17:52,055           instead of `find_packages(...)`/`find:`).

2024-02-14T15:17:52,055           You can read more about "package discovery" on setuptools documentation page:

2024-02-14T15:17:52,056           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-14T15:17:52,056           If you don't want 'moleculekit.fileformats.dcd.include' to be distributed and are
2024-02-14T15:17:52,056           already explicitly excluding 'moleculekit.fileformats.dcd.include' via
2024-02-14T15:17:52,056           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-14T15:17:52,056           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-14T15:17:52,056           combination with a more fine grained `package-data` configuration.

2024-02-14T15:17:52,056           You can read more about "package data files" on setuptools documentation page:

2024-02-14T15:17:52,057           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-14T15:17:52,057           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-14T15:17:52,057                 even if it does not contain any `.py` files.
2024-02-14T15:17:52,057                 On the other hand, currently there is no concept of package data
2024-02-14T15:17:52,057                 directory, all directories are treated like packages.
2024-02-14T15:17:52,057           ********************************************************************************

2024-02-14T15:17:52,058   !!
2024-02-14T15:17:52,058     check.warn(importable)
2024-02-14T15:17:52,058   /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd.src' is absent from the `packages` configuration.
2024-02-14T15:17:52,058   !!

2024-02-14T15:17:52,058           ********************************************************************************
2024-02-14T15:17:52,058           ############################
2024-02-14T15:17:52,058           # Package would be ignored #
2024-02-14T15:17:52,058           ############################
2024-02-14T15:17:52,059           Python recognizes 'moleculekit.fileformats.dcd.src' as an importable package[^1],
2024-02-14T15:17:52,059           but it is absent from setuptools' `packages` configuration.

2024-02-14T15:17:52,059           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-14T15:17:52,059           package, please make sure that 'moleculekit.fileformats.dcd.src' is explicitly added
2024-02-14T15:17:52,059           to the `packages` configuration field.

2024-02-14T15:17:52,059           Alternatively, you can also rely on setuptools' discovery methods
2024-02-14T15:17:52,059           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-14T15:17:52,060           instead of `find_packages(...)`/`find:`).

2024-02-14T15:17:52,060           You can read more about "package discovery" on setuptools documentation page:

2024-02-14T15:17:52,060           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-14T15:17:52,060           If you don't want 'moleculekit.fileformats.dcd.src' to be distributed and are
2024-02-14T15:17:52,060           already explicitly excluding 'moleculekit.fileformats.dcd.src' via
2024-02-14T15:17:52,060           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-14T15:17:52,061           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-14T15:17:52,061           combination with a more fine grained `package-data` configuration.

2024-02-14T15:17:52,061           You can read more about "package data files" on setuptools documentation page:

2024-02-14T15:17:52,061           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-14T15:17:52,061           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-14T15:17:52,062                 even if it does not contain any `.py` files.
2024-02-14T15:17:52,062                 On the other hand, currently there is no concept of package data
2024-02-14T15:17:52,062                 directory, all directories are treated like packages.
2024-02-14T15:17:52,062           ********************************************************************************

2024-02-14T15:17:52,062   !!
2024-02-14T15:17:52,062     check.warn(importable)
2024-02-14T15:17:52,062   /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc' is absent from the `packages` configuration.
2024-02-14T15:17:52,062   !!

2024-02-14T15:17:52,063           ********************************************************************************
2024-02-14T15:17:52,063           ############################
2024-02-14T15:17:52,063           # Package would be ignored #
2024-02-14T15:17:52,063           ############################
2024-02-14T15:17:52,063           Python recognizes 'moleculekit.fileformats.xtc' as an importable package[^1],
2024-02-14T15:17:52,063           but it is absent from setuptools' `packages` configuration.

2024-02-14T15:17:52,063           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-14T15:17:52,064           package, please make sure that 'moleculekit.fileformats.xtc' is explicitly added
2024-02-14T15:17:52,064           to the `packages` configuration field.

2024-02-14T15:17:52,064           Alternatively, you can also rely on setuptools' discovery methods
2024-02-14T15:17:52,064           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-14T15:17:52,064           instead of `find_packages(...)`/`find:`).

2024-02-14T15:17:52,064           You can read more about "package discovery" on setuptools documentation page:

2024-02-14T15:17:52,064           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-14T15:17:52,065           If you don't want 'moleculekit.fileformats.xtc' to be distributed and are
2024-02-14T15:17:52,065           already explicitly excluding 'moleculekit.fileformats.xtc' via
2024-02-14T15:17:52,065           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-14T15:17:52,065           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-14T15:17:52,065           combination with a more fine grained `package-data` configuration.

2024-02-14T15:17:52,066           You can read more about "package data files" on setuptools documentation page:

2024-02-14T15:17:52,066           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-14T15:17:52,066           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-14T15:17:52,066                 even if it does not contain any `.py` files.
2024-02-14T15:17:52,066                 On the other hand, currently there is no concept of package data
2024-02-14T15:17:52,067                 directory, all directories are treated like packages.
2024-02-14T15:17:52,067           ********************************************************************************

2024-02-14T15:17:52,067   !!
2024-02-14T15:17:52,067     check.warn(importable)
2024-02-14T15:17:52,067   /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc.include' is absent from the `packages` configuration.
2024-02-14T15:17:52,067   !!

2024-02-14T15:17:52,068           ********************************************************************************
2024-02-14T15:17:52,068           ############################
2024-02-14T15:17:52,068           # Package would be ignored #
2024-02-14T15:17:52,068           ############################
2024-02-14T15:17:52,068           Python recognizes 'moleculekit.fileformats.xtc.include' as an importable package[^1],
2024-02-14T15:17:52,068           but it is absent from setuptools' `packages` configuration.

2024-02-14T15:17:52,069           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-14T15:17:52,069           package, please make sure that 'moleculekit.fileformats.xtc.include' is explicitly added
2024-02-14T15:17:52,069           to the `packages` configuration field.

2024-02-14T15:17:52,069           Alternatively, you can also rely on setuptools' discovery methods
2024-02-14T15:17:52,069           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-14T15:17:52,069           instead of `find_packages(...)`/`find:`).

2024-02-14T15:17:52,069           You can read more about "package discovery" on setuptools documentation page:

2024-02-14T15:17:52,070           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-14T15:17:52,070           If you don't want 'moleculekit.fileformats.xtc.include' to be distributed and are
2024-02-14T15:17:52,070           already explicitly excluding 'moleculekit.fileformats.xtc.include' via
2024-02-14T15:17:52,070           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-14T15:17:52,070           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-14T15:17:52,070           combination with a more fine grained `package-data` configuration.

2024-02-14T15:17:52,071           You can read more about "package data files" on setuptools documentation page:

2024-02-14T15:17:52,071           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-14T15:17:52,071           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-14T15:17:52,071                 even if it does not contain any `.py` files.
2024-02-14T15:17:52,071                 On the other hand, currently there is no concept of package data
2024-02-14T15:17:52,072                 directory, all directories are treated like packages.
2024-02-14T15:17:52,072           ********************************************************************************

2024-02-14T15:17:52,072   !!
2024-02-14T15:17:52,072     check.warn(importable)
2024-02-14T15:17:52,072   /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc.src' is absent from the `packages` configuration.
2024-02-14T15:17:52,072   !!

2024-02-14T15:17:52,073           ********************************************************************************
2024-02-14T15:17:52,073           ############################
2024-02-14T15:17:52,073           # Package would be ignored #
2024-02-14T15:17:52,073           ############################
2024-02-14T15:17:52,073           Python recognizes 'moleculekit.fileformats.xtc.src' as an importable package[^1],
2024-02-14T15:17:52,073           but it is absent from setuptools' `packages` configuration.

2024-02-14T15:17:52,074           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-14T15:17:52,074           package, please make sure that 'moleculekit.fileformats.xtc.src' is explicitly added
2024-02-14T15:17:52,074           to the `packages` configuration field.

2024-02-14T15:17:52,074           Alternatively, you can also rely on setuptools' discovery methods
2024-02-14T15:17:52,074           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-14T15:17:52,074           instead of `find_packages(...)`/`find:`).

2024-02-14T15:17:52,075           You can read more about "package discovery" on setuptools documentation page:

2024-02-14T15:17:52,075           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-14T15:17:52,075           If you don't want 'moleculekit.fileformats.xtc.src' to be distributed and are
2024-02-14T15:17:52,076           already explicitly excluding 'moleculekit.fileformats.xtc.src' via
2024-02-14T15:17:52,076           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-14T15:17:52,076           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-14T15:17:52,076           combination with a more fine grained `package-data` configuration.

2024-02-14T15:17:52,076           You can read more about "package data files" on setuptools documentation page:

2024-02-14T15:17:52,076           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-14T15:17:52,077           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-14T15:17:52,077                 even if it does not contain any `.py` files.
2024-02-14T15:17:52,077                 On the other hand, currently there is no concept of package data
2024-02-14T15:17:52,077                 directory, all directories are treated like packages.
2024-02-14T15:17:52,078           ********************************************************************************

2024-02-14T15:17:52,078   !!
2024-02-14T15:17:52,078     check.warn(importable)
2024-02-14T15:17:52,078   /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2024-02-14T15:17:52,078   !!

2024-02-14T15:17:52,079           ********************************************************************************
2024-02-14T15:17:52,079           ############################
2024-02-14T15:17:52,079           # Package would be ignored #
2024-02-14T15:17:52,079           ############################
2024-02-14T15:17:52,079           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2024-02-14T15:17:52,079           but it is absent from setuptools' `packages` configuration.

2024-02-14T15:17:52,080           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-14T15:17:52,080           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2024-02-14T15:17:52,080           to the `packages` configuration field.

2024-02-14T15:17:52,080           Alternatively, you can also rely on setuptools' discovery methods
2024-02-14T15:17:52,080           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-14T15:17:52,080           instead of `find_packages(...)`/`find:`).

2024-02-14T15:17:52,081           You can read more about "package discovery" on setuptools documentation page:

2024-02-14T15:17:52,081           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-14T15:17:52,081           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2024-02-14T15:17:52,081           already explicitly excluding 'moleculekit.interactions.cationpi' via
2024-02-14T15:17:52,082           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-14T15:17:52,082           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-14T15:17:52,082           combination with a more fine grained `package-data` configuration.

2024-02-14T15:17:52,082           You can read more about "package data files" on setuptools documentation page:

2024-02-14T15:17:52,082           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-14T15:17:52,083           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-14T15:17:52,083                 even if it does not contain any `.py` files.
2024-02-14T15:17:52,083                 On the other hand, currently there is no concept of package data
2024-02-14T15:17:52,083                 directory, all directories are treated like packages.
2024-02-14T15:17:52,083           ********************************************************************************

2024-02-14T15:17:52,083   !!
2024-02-14T15:17:52,083     check.warn(importable)
2024-02-14T15:17:52,083   /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2024-02-14T15:17:52,084   !!

2024-02-14T15:17:52,084           ********************************************************************************
2024-02-14T15:17:52,084           ############################
2024-02-14T15:17:52,084           # Package would be ignored #
2024-02-14T15:17:52,084           ############################
2024-02-14T15:17:52,084           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2024-02-14T15:17:52,084           but it is absent from setuptools' `packages` configuration.

2024-02-14T15:17:52,085           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-14T15:17:52,085           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2024-02-14T15:17:52,085           to the `packages` configuration field.

2024-02-14T15:17:52,085           Alternatively, you can also rely on setuptools' discovery methods
2024-02-14T15:17:52,085           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-14T15:17:52,085           instead of `find_packages(...)`/`find:`).

2024-02-14T15:17:52,085           You can read more about "package discovery" on setuptools documentation page:

2024-02-14T15:17:52,086           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-14T15:17:52,086           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2024-02-14T15:17:52,088           already explicitly excluding 'moleculekit.interactions.hbonds' via
2024-02-14T15:17:52,088           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-14T15:17:52,088           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-14T15:17:52,088           combination with a more fine grained `package-data` configuration.

2024-02-14T15:17:52,089           You can read more about "package data files" on setuptools documentation page:

2024-02-14T15:17:52,089           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-14T15:17:52,089           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-14T15:17:52,089                 even if it does not contain any `.py` files.
2024-02-14T15:17:52,090                 On the other hand, currently there is no concept of package data
2024-02-14T15:17:52,090                 directory, all directories are treated like packages.
2024-02-14T15:17:52,090           ********************************************************************************

2024-02-14T15:17:52,090   !!
2024-02-14T15:17:52,090     check.warn(importable)
2024-02-14T15:17:52,090   /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2024-02-14T15:17:52,091   !!

2024-02-14T15:17:52,092           ********************************************************************************
2024-02-14T15:17:52,092           ############################
2024-02-14T15:17:52,092           # Package would be ignored #
2024-02-14T15:17:52,092           ############################
2024-02-14T15:17:52,093           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2024-02-14T15:17:52,093           but it is absent from setuptools' `packages` configuration.

2024-02-14T15:17:52,093           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-14T15:17:52,093           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2024-02-14T15:17:52,093           to the `packages` configuration field.

2024-02-14T15:17:52,094           Alternatively, you can also rely on setuptools' discovery methods
2024-02-14T15:17:52,094           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-14T15:17:52,094           instead of `find_packages(...)`/`find:`).

2024-02-14T15:17:52,094           You can read more about "package discovery" on setuptools documentation page:

2024-02-14T15:17:52,095           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-14T15:17:52,095           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2024-02-14T15:17:52,095           already explicitly excluding 'moleculekit.interactions.pipi' via
2024-02-14T15:17:52,095           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-14T15:17:52,095           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-14T15:17:52,096           combination with a more fine grained `package-data` configuration.

2024-02-14T15:17:52,096           You can read more about "package data files" on setuptools documentation page:

2024-02-14T15:17:52,096           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-14T15:17:52,096           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-14T15:17:52,097                 even if it does not contain any `.py` files.
2024-02-14T15:17:52,097                 On the other hand, currently there is no concept of package data
2024-02-14T15:17:52,097                 directory, all directories are treated like packages.
2024-02-14T15:17:52,097           ********************************************************************************

2024-02-14T15:17:52,097   !!
2024-02-14T15:17:52,097     check.warn(importable)
2024-02-14T15:17:52,098   /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2024-02-14T15:17:52,098   !!

2024-02-14T15:17:52,098           ********************************************************************************
2024-02-14T15:17:52,098           ############################
2024-02-14T15:17:52,098           # Package would be ignored #
2024-02-14T15:17:52,098           ############################
2024-02-14T15:17:52,099           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2024-02-14T15:17:52,099           but it is absent from setuptools' `packages` configuration.

2024-02-14T15:17:52,099           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-14T15:17:52,099           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2024-02-14T15:17:52,099           to the `packages` configuration field.

2024-02-14T15:17:52,100           Alternatively, you can also rely on setuptools' discovery methods
2024-02-14T15:17:52,100           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-14T15:17:52,100           instead of `find_packages(...)`/`find:`).

2024-02-14T15:17:52,100           You can read more about "package discovery" on setuptools documentation page:

2024-02-14T15:17:52,100           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-14T15:17:52,101           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2024-02-14T15:17:52,101           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2024-02-14T15:17:52,101           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-14T15:17:52,101           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-14T15:17:52,101           combination with a more fine grained `package-data` configuration.

2024-02-14T15:17:52,101           You can read more about "package data files" on setuptools documentation page:

2024-02-14T15:17:52,102           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-14T15:17:52,102           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-14T15:17:52,102                 even if it does not contain any `.py` files.
2024-02-14T15:17:52,102                 On the other hand, currently there is no concept of package data
2024-02-14T15:17:52,102                 directory, all directories are treated like packages.
2024-02-14T15:17:52,102           ********************************************************************************

2024-02-14T15:17:52,103   !!
2024-02-14T15:17:52,103     check.warn(importable)
2024-02-14T15:17:52,103   /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2024-02-14T15:17:52,103   !!

2024-02-14T15:17:52,103           ********************************************************************************
2024-02-14T15:17:52,103           ############################
2024-02-14T15:17:52,103           # Package would be ignored #
2024-02-14T15:17:52,104           ############################
2024-02-14T15:17:52,104           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2024-02-14T15:17:52,104           but it is absent from setuptools' `packages` configuration.

2024-02-14T15:17:52,104           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-14T15:17:52,104           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2024-02-14T15:17:52,104           to the `packages` configuration field.

2024-02-14T15:17:52,105           Alternatively, you can also rely on setuptools' discovery methods
2024-02-14T15:17:52,105           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-14T15:17:52,105           instead of `find_packages(...)`/`find:`).

2024-02-14T15:17:52,105           You can read more about "package discovery" on setuptools documentation page:

2024-02-14T15:17:52,105           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-14T15:17:52,106           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2024-02-14T15:17:52,106           already explicitly excluding 'moleculekit.occupancy_utils' via
2024-02-14T15:17:52,106           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-14T15:17:52,106           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-14T15:17:52,106           combination with a more fine grained `package-data` configuration.

2024-02-14T15:17:52,106           You can read more about "package data files" on setuptools documentation page:

2024-02-14T15:17:52,107           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-14T15:17:52,107           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-14T15:17:52,107                 even if it does not contain any `.py` files.
2024-02-14T15:17:52,107                 On the other hand, currently there is no concept of package data
2024-02-14T15:17:52,107                 directory, all directories are treated like packages.
2024-02-14T15:17:52,107           ********************************************************************************

2024-02-14T15:17:52,108   !!
2024-02-14T15:17:52,108     check.warn(importable)
2024-02-14T15:17:52,108   /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2024-02-14T15:17:52,108   !!

2024-02-14T15:17:52,108           ********************************************************************************
2024-02-14T15:17:52,108           ############################
2024-02-14T15:17:52,108           # Package would be ignored #
2024-02-14T15:17:52,109           ############################
2024-02-14T15:17:52,109           Python recognizes 'moleculekit.share' as an importable package[^1],
2024-02-14T15:17:52,109           but it is absent from setuptools' `packages` configuration.

2024-02-14T15:17:52,109           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-14T15:17:52,109           package, please make sure that 'moleculekit.share' is explicitly added
2024-02-14T15:17:52,109           to the `packages` configuration field.

2024-02-14T15:17:52,110           Alternatively, you can also rely on setuptools' discovery methods
2024-02-14T15:17:52,110           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-14T15:17:52,110           instead of `find_packages(...)`/`find:`).

2024-02-14T15:17:52,110           You can read more about "package discovery" on setuptools documentation page:

2024-02-14T15:17:52,110           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-14T15:17:52,111           If you don't want 'moleculekit.share' to be distributed and are
2024-02-14T15:17:52,111           already explicitly excluding 'moleculekit.share' via
2024-02-14T15:17:52,111           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-14T15:17:52,111           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-14T15:17:52,111           combination with a more fine grained `package-data` configuration.

2024-02-14T15:17:52,111           You can read more about "package data files" on setuptools documentation page:

2024-02-14T15:17:52,111           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-14T15:17:52,112           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-14T15:17:52,112                 even if it does not contain any `.py` files.
2024-02-14T15:17:52,112                 On the other hand, currently there is no concept of package data
2024-02-14T15:17:52,112                 directory, all directories are treated like packages.
2024-02-14T15:17:52,112           ********************************************************************************

2024-02-14T15:17:52,112   !!
2024-02-14T15:17:52,113     check.warn(importable)
2024-02-14T15:17:52,113   /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2024-02-14T15:17:52,113   !!

2024-02-14T15:17:52,113           ********************************************************************************
2024-02-14T15:17:52,113           ############################
2024-02-14T15:17:52,113           # Package would be ignored #
2024-02-14T15:17:52,113           ############################
2024-02-14T15:17:52,113           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2024-02-14T15:17:52,114           but it is absent from setuptools' `packages` configuration.

2024-02-14T15:17:52,114           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-14T15:17:52,114           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2024-02-14T15:17:52,114           to the `packages` configuration field.

2024-02-14T15:17:52,114           Alternatively, you can also rely on setuptools' discovery methods
2024-02-14T15:17:52,114           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-14T15:17:52,114           instead of `find_packages(...)`/`find:`).

2024-02-14T15:17:52,115           You can read more about "package discovery" on setuptools documentation page:

2024-02-14T15:17:52,115           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-14T15:17:52,115           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2024-02-14T15:17:52,115           already explicitly excluding 'moleculekit.share.atomselect' via
2024-02-14T15:17:52,116           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-14T15:17:52,116           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-14T15:17:52,116           combination with a more fine grained `package-data` configuration.

2024-02-14T15:17:52,116           You can read more about "package data files" on setuptools documentation page:

2024-02-14T15:17:52,116           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-14T15:17:52,117           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-14T15:17:52,117                 even if it does not contain any `.py` files.
2024-02-14T15:17:52,117                 On the other hand, currently there is no concept of package data
2024-02-14T15:17:52,117                 directory, all directories are treated like packages.
2024-02-14T15:17:52,117           ********************************************************************************

2024-02-14T15:17:52,118   !!
2024-02-14T15:17:52,118     check.warn(importable)
2024-02-14T15:17:52,118   /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2024-02-14T15:17:52,118   !!

2024-02-14T15:17:52,118           ********************************************************************************
2024-02-14T15:17:52,118           ############################
2024-02-14T15:17:52,119           # Package would be ignored #
2024-02-14T15:17:52,119           ############################
2024-02-14T15:17:52,119           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2024-02-14T15:17:52,119           but it is absent from setuptools' `packages` configuration.

2024-02-14T15:17:52,119           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-14T15:17:52,119           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2024-02-14T15:17:52,119           to the `packages` configuration field.

2024-02-14T15:17:52,120           Alternatively, you can also rely on setuptools' discovery methods
2024-02-14T15:17:52,120           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-14T15:17:52,120           instead of `find_packages(...)`/`find:`).

2024-02-14T15:17:52,120           You can read more about "package discovery" on setuptools documentation page:

2024-02-14T15:17:52,121           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-14T15:17:52,121           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2024-02-14T15:17:52,121           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2024-02-14T15:17:52,121           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-14T15:17:52,121           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-14T15:17:52,121           combination with a more fine grained `package-data` configuration.

2024-02-14T15:17:52,122           You can read more about "package data files" on setuptools documentation page:

2024-02-14T15:17:52,122           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-14T15:17:52,122           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-14T15:17:52,122                 even if it does not contain any `.py` files.
2024-02-14T15:17:52,123                 On the other hand, currently there is no concept of package data
2024-02-14T15:17:52,123                 directory, all directories are treated like packages.
2024-02-14T15:17:52,123           ********************************************************************************

2024-02-14T15:17:52,123   !!
2024-02-14T15:17:52,123     check.warn(importable)
2024-02-14T15:17:52,123   /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2024-02-14T15:17:52,123   !!

2024-02-14T15:17:52,124           ********************************************************************************
2024-02-14T15:17:52,124           ############################
2024-02-14T15:17:52,124           # Package would be ignored #
2024-02-14T15:17:52,124           ############################
2024-02-14T15:17:52,124           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2024-02-14T15:17:52,124           but it is absent from setuptools' `packages` configuration.

2024-02-14T15:17:52,125           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-14T15:17:52,125           package, please make sure that 'moleculekit.tmalign' is explicitly added
2024-02-14T15:17:52,125           to the `packages` configuration field.

2024-02-14T15:17:52,125           Alternatively, you can also rely on setuptools' discovery methods
2024-02-14T15:17:52,125           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-14T15:17:52,125           instead of `find_packages(...)`/`find:`).

2024-02-14T15:17:52,126           You can read more about "package discovery" on setuptools documentation page:

2024-02-14T15:17:52,126           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-14T15:17:52,126           If you don't want 'moleculekit.tmalign' to be distributed and are
2024-02-14T15:17:52,126           already explicitly excluding 'moleculekit.tmalign' via
2024-02-14T15:17:52,126           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-14T15:17:52,126           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-14T15:17:52,126           combination with a more fine grained `package-data` configuration.

2024-02-14T15:17:52,127           You can read more about "package data files" on setuptools documentation page:

2024-02-14T15:17:52,127           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-14T15:17:52,127           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-14T15:17:52,127                 even if it does not contain any `.py` files.
2024-02-14T15:17:52,128                 On the other hand, currently there is no concept of package data
2024-02-14T15:17:52,128                 directory, all directories are treated like packages.
2024-02-14T15:17:52,128           ********************************************************************************

2024-02-14T15:17:52,128   !!
2024-02-14T15:17:52,128     check.warn(importable)
2024-02-14T15:17:52,128   /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2024-02-14T15:17:52,128   !!

2024-02-14T15:17:52,129           ********************************************************************************
2024-02-14T15:17:52,129           ############################
2024-02-14T15:17:52,129           # Package would be ignored #
2024-02-14T15:17:52,129           ############################
2024-02-14T15:17:52,129           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2024-02-14T15:17:52,129           but it is absent from setuptools' `packages` configuration.

2024-02-14T15:17:52,129           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-14T15:17:52,130           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2024-02-14T15:17:52,130           to the `packages` configuration field.

2024-02-14T15:17:52,130           Alternatively, you can also rely on setuptools' discovery methods
2024-02-14T15:17:52,130           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-14T15:17:52,130           instead of `find_packages(...)`/`find:`).

2024-02-14T15:17:52,130           You can read more about "package discovery" on setuptools documentation page:

2024-02-14T15:17:52,131           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-14T15:17:52,131           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2024-02-14T15:17:52,131           already explicitly excluding 'moleculekit.tmalign.include' via
2024-02-14T15:17:52,131           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-14T15:17:52,131           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-14T15:17:52,131           combination with a more fine grained `package-data` configuration.

2024-02-14T15:17:52,131           You can read more about "package data files" on setuptools documentation page:

2024-02-14T15:17:52,132           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-14T15:17:52,132           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-14T15:17:52,132                 even if it does not contain any `.py` files.
2024-02-14T15:17:52,132                 On the other hand, currently there is no concept of package data
2024-02-14T15:17:52,132                 directory, all directories are treated like packages.
2024-02-14T15:17:52,132           ********************************************************************************

2024-02-14T15:17:52,133   !!
2024-02-14T15:17:52,133     check.warn(importable)
2024-02-14T15:17:52,133   /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2024-02-14T15:17:52,133   !!

2024-02-14T15:17:52,133           ********************************************************************************
2024-02-14T15:17:52,133           ############################
2024-02-14T15:17:52,133           # Package would be ignored #
2024-02-14T15:17:52,133           ############################
2024-02-14T15:17:52,134           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2024-02-14T15:17:52,134           but it is absent from setuptools' `packages` configuration.

2024-02-14T15:17:52,134           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-14T15:17:52,134           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2024-02-14T15:17:52,134           to the `packages` configuration field.

2024-02-14T15:17:52,134           Alternatively, you can also rely on setuptools' discovery methods
2024-02-14T15:17:52,134           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-14T15:17:52,135           instead of `find_packages(...)`/`find:`).

2024-02-14T15:17:52,135           You can read more about "package discovery" on setuptools documentation page:

2024-02-14T15:17:52,135           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-14T15:17:52,135           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2024-02-14T15:17:52,135           already explicitly excluding 'moleculekit.tmalign.src' via
2024-02-14T15:17:52,136           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-14T15:17:52,136           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-14T15:17:52,136           combination with a more fine grained `package-data` configuration.

2024-02-14T15:17:52,136           You can read more about "package data files" on setuptools documentation page:

2024-02-14T15:17:52,136           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-14T15:17:52,137           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-14T15:17:52,137                 even if it does not contain any `.py` files.
2024-02-14T15:17:52,137                 On the other hand, currently there is no concept of package data
2024-02-14T15:17:52,137                 directory, all directories are treated like packages.
2024-02-14T15:17:52,137           ********************************************************************************

2024-02-14T15:17:52,137   !!
2024-02-14T15:17:52,137     check.warn(importable)
2024-02-14T15:17:52,138   /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2024-02-14T15:17:52,138   !!

2024-02-14T15:17:52,138           ********************************************************************************
2024-02-14T15:17:52,138           ############################
2024-02-14T15:17:52,138           # Package would be ignored #
2024-02-14T15:17:52,138           ############################
2024-02-14T15:17:52,138           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2024-02-14T15:17:52,139           but it is absent from setuptools' `packages` configuration.

2024-02-14T15:17:52,139           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-14T15:17:52,139           package, please make sure that 'moleculekit.wrapping' is explicitly added
2024-02-14T15:17:52,139           to the `packages` configuration field.

2024-02-14T15:17:52,139           Alternatively, you can also rely on setuptools' discovery methods
2024-02-14T15:17:52,139           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-14T15:17:52,139           instead of `find_packages(...)`/`find:`).

2024-02-14T15:17:52,140           You can read more about "package discovery" on setuptools documentation page:

2024-02-14T15:17:52,140           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-14T15:17:52,140           If you don't want 'moleculekit.wrapping' to be distributed and are
2024-02-14T15:17:52,140           already explicitly excluding 'moleculekit.wrapping' via
2024-02-14T15:17:52,140           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-14T15:17:52,141           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-14T15:17:52,141           combination with a more fine grained `package-data` configuration.

2024-02-14T15:17:52,141           You can read more about "package data files" on setuptools documentation page:

2024-02-14T15:17:52,141           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-14T15:17:52,141           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-14T15:17:52,142                 even if it does not contain any `.py` files.
2024-02-14T15:17:52,142                 On the other hand, currently there is no concept of package data
2024-02-14T15:17:52,142                 directory, all directories are treated like packages.
2024-02-14T15:17:52,142           ********************************************************************************

2024-02-14T15:17:52,142   !!
2024-02-14T15:17:52,142     check.warn(importable)
2024-02-14T15:17:52,142   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-14T15:17:52,142   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-14T15:17:52,142   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-02-14T15:17:52,143   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-02-14T15:17:52,143   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-02-14T15:17:52,143   creating build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-02-14T15:17:52,143   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-02-14T15:17:52,143   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-02-14T15:17:52,143   creating build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-02-14T15:17:52,143   copying moleculekit/cython_utils/cython_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-02-14T15:17:52,159   copying moleculekit/cython_utils/cython_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-02-14T15:17:52,161   creating build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-02-14T15:17:52,162   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-02-14T15:17:52,186   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-02-14T15:17:52,189   creating build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-02-14T15:17:52,190   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-02-14T15:17:52,209   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-02-14T15:17:52,211   creating build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-02-14T15:17:52,212   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-02-14T15:17:52,215   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-02-14T15:17:52,217   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-02-14T15:17:52,417   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2024-02-14T15:17:52,418   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2024-02-14T15:17:52,420   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr
2024-02-14T15:17:52,421   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,422   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,423   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,426   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,428   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,430   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,432   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,434   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,436   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,438   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,440   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,442   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,444   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,446   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,448   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,450   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,452   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,454   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,457   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,459   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,461   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,463   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,466   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,468   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,470   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,472   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,474   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,476   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,478   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,480   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,482   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,484   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,486   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,488   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,490   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,492   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,494   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,496   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,498   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,500   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,502   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,504   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,506   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,508   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,510   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,513   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,515   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,517   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,519   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,521   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,523   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,525   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,527   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,530   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,532   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,533   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,535   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,537   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,539   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,541   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,543   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,545   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,547   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,549   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,552   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,553   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,556   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,558   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,560   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,562   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,564   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,566   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,569   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,571   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,573   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,575   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,577   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,579   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,581   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,583   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,585   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,587   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,589   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,592   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,594   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,596   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,598   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,600   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,603   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,605   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,607   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,609   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,611   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,613   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,615   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,618   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,620   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,622   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,624   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,626   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,628   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,630   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,632   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,634   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,637   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,639   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,641   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,643   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,646   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,648   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,650   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,653   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,655   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,656   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,659   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,661   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,663   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,666   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,668   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,670   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,673   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,675   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,677   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,679   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,682   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,684   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,686   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,688   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,691   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,693   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,695   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,697   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,700   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,702   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,704   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,706   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,708   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,710   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,712   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,714   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,716   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,719   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,721   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,724   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,726   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,727   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,730   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,732   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,734   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,736   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,738   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,740   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,742   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,744   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,747   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,749   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,751   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,753   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,755   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,757   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,760   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,762   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,764   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,766   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,768   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,770   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,772   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,774   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,777   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,782   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,784   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,786   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,788   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,790   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,792   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,794   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-14T15:17:52,797   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-02-14T15:17:52,798   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-02-14T15:17:52,816   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-02-14T15:17:52,818   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-02-14T15:17:52,821   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2024-02-14T15:17:52,822   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2024-02-14T15:17:52,825   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-02-14T15:17:52,826   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-02-14T15:17:52,831   creating build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-02-14T15:17:52,833   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-02-14T15:17:52,852   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-02-14T15:17:52,855   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-02-14T15:17:52,856   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-02-14T15:17:52,875   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-02-14T15:17:52,877   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-02-14T15:17:52,878   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-02-14T15:17:52,897   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-02-14T15:17:52,899   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-02-14T15:17:52,900   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-02-14T15:17:52,921   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-02-14T15:17:52,923   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-02-14T15:17:52,924   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-02-14T15:17:52,945   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-02-14T15:17:52,947   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-02-14T15:17:52,948   copying moleculekit/fileformats/binpos/binpos.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-02-14T15:17:52,961   copying moleculekit/fileformats/binpos/binpos.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-02-14T15:17:52,964   copying moleculekit/fileformats/binpos/binposlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-02-14T15:17:52,966   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-02-14T15:17:52,967   copying moleculekit/fileformats/binpos/include/binposplugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-02-14T15:17:52,969   copying moleculekit/fileformats/binpos/include/largefiles.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-02-14T15:17:52,971   copying moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-02-14T15:17:52,974   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-02-14T15:17:52,975   copying moleculekit/fileformats/binpos/src/binposplugin.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-02-14T15:17:52,978   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-02-14T15:17:52,978   copying moleculekit/fileformats/dcd/dcd.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-02-14T15:17:52,999   copying moleculekit/fileformats/dcd/dcd.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-02-14T15:17:53,002   copying moleculekit/fileformats/dcd/dcdlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-02-14T15:17:53,004   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-02-14T15:17:53,005   copying moleculekit/fileformats/dcd/include/dcdplugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-02-14T15:17:53,007   copying moleculekit/fileformats/dcd/include/endianswap.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-02-14T15:17:53,010   copying moleculekit/fileformats/dcd/include/fastio.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-02-14T15:17:53,012   copying moleculekit/fileformats/dcd/include/largefiles.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-02-14T15:17:53,014   copying moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-02-14T15:17:53,018   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-02-14T15:17:53,019   copying moleculekit/fileformats/dcd/src/dcdplugin.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-02-14T15:17:53,022   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-02-14T15:17:53,023   copying moleculekit/fileformats/xtc/trr.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-02-14T15:17:53,049   copying moleculekit/fileformats/xtc/trr.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-02-14T15:17:53,053   copying moleculekit/fileformats/xtc/trrlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-02-14T15:17:53,055   copying moleculekit/fileformats/xtc/xdrlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-02-14T15:17:53,057   copying moleculekit/fileformats/xtc/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-02-14T15:17:53,078   copying moleculekit/fileformats/xtc/xtc.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-02-14T15:17:53,081   copying moleculekit/fileformats/xtc/xtclib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-02-14T15:17:53,083   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-02-14T15:17:53,084   copying moleculekit/fileformats/xtc/include/trr_header.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-02-14T15:17:53,086   copying moleculekit/fileformats/xtc/include/xdr_seek.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-02-14T15:17:53,089   copying moleculekit/fileformats/xtc/include/xdrfile.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-02-14T15:17:53,092   copying moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-02-14T15:17:53,094   copying moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-02-14T15:17:53,097   copying moleculekit/fileformats/xtc/include/xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-02-14T15:17:53,099   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-02-14T15:17:53,100   copying moleculekit/fileformats/xtc/src/xdr_seek.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-02-14T15:17:53,103   copying moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-02-14T15:17:53,107   copying moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-02-14T15:17:53,111   copying moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-02-14T15:17:53,113   copying moleculekit/fileformats/xtc/src/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-02-14T15:17:53,127   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2024-02-14T15:17:53,127   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.8.21'
2024-02-14T15:17:53,127   running build_ext
2024-02-14T15:17:53,139   building 'moleculekit.interactions.hbonds' extension
2024-02-14T15:17:53,140   creating build/temp.linux-armv7l-cpython-39
2024-02-14T15:17:53,141   creating build/temp.linux-armv7l-cpython-39/moleculekit
2024-02-14T15:17:53,142   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions
2024-02-14T15:17:53,143   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-02-14T15:17:53,145   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -O3
2024-02-14T15:17:53,422   In file included from /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-14T15:17:53,422                    from /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-14T15:17:53,423                    from /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-14T15:17:53,423                    from moleculekit/interactions/hbonds/hbonds.cpp:1230:
2024-02-14T15:17:53,423   /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-14T15:17:53,423      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-14T15:17:53,423         |  ^~~~~~~
2024-02-14T15:18:16,583   moleculekit/interactions/hbonds/hbonds.cpp: In function ‘PyObject* __pyx_pw_11moleculekit_12interactions_6hbonds_1calculate(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2024-02-14T15:18:16,583   moleculekit/interactions/hbonds/hbonds.cpp:21001:52: warning: ‘__pyx_v_d_idx_h’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-14T15:18:16,584   21001 |             (__pyx_v_results[__pyx_v_f]).push_back(__pyx_v_d_idx_h);
2024-02-14T15:18:16,584         |                                                    ^~~~~~~~~~~~~~~
2024-02-14T15:18:16,584   moleculekit/interactions/hbonds/hbonds.cpp:20014:57: note: ‘__pyx_v_d_idx_h’ was declared here
2024-02-14T15:18:16,584   20014 |   __pyx_t_11moleculekit_12interactions_6hbonds_UINT32_t __pyx_v_d_idx_h;
2024-02-14T15:18:16,585         |                                                         ^~~~~~~~~~~~~~~
2024-02-14T15:18:19,709   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so
2024-02-14T15:18:20,025   building 'moleculekit.interactions.pipi' extension
2024-02-14T15:18:20,026   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-02-14T15:18:20,027   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -O3
2024-02-14T15:18:20,261   In file included from /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-14T15:18:20,261                    from /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-14T15:18:20,261                    from /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-14T15:18:20,261                    from moleculekit/interactions/pipi/pipi.cpp:1230:
2024-02-14T15:18:20,261   /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-14T15:18:20,262      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-14T15:18:20,262         |  ^~~~~~~
2024-02-14T15:18:48,452   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so
2024-02-14T15:18:48,780   building 'moleculekit.interactions.cationpi' extension
2024-02-14T15:18:48,781   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-02-14T15:18:48,782   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -O3
2024-02-14T15:18:49,013   In file included from /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-14T15:18:49,013                    from /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-14T15:18:49,013                    from /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-14T15:18:49,014                    from moleculekit/interactions/cationpi/cationpi.cpp:1230:
2024-02-14T15:18:49,014   /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-14T15:18:49,014      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-14T15:18:49,014         |  ^~~~~~~
2024-02-14T15:19:17,122   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so
2024-02-14T15:19:17,441   building 'moleculekit.interactions.sigmahole' extension
2024-02-14T15:19:17,442   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-02-14T15:19:17,442   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -O3
2024-02-14T15:19:17,703   In file included from /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-14T15:19:17,704                    from /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-14T15:19:17,704                    from /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-14T15:19:17,704                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1230:
2024-02-14T15:19:17,704   /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-14T15:19:17,704      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-14T15:19:17,705         |  ^~~~~~~
2024-02-14T15:19:45,234   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so
2024-02-14T15:19:45,565   building 'moleculekit.wrapping' extension
2024-02-14T15:19:45,565   creating build/temp.linux-armv7l-cpython-39/moleculekit/wrapping
2024-02-14T15:19:45,566   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -O3
2024-02-14T15:19:45,811   In file included from /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-14T15:19:45,812                    from /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-14T15:19:45,812                    from /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-14T15:19:45,812                    from moleculekit/wrapping/wrapping.cpp:1230:
2024-02-14T15:19:45,812   /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-14T15:19:45,812      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-14T15:19:45,812         |  ^~~~~~~
2024-02-14T15:20:11,734   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so
2024-02-14T15:20:11,947   building 'moleculekit.bondguesser_utils' extension
2024-02-14T15:20:11,948   creating build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-02-14T15:20:11,949   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2024-02-14T15:20:12,176   In file included from /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-14T15:20:12,176                    from /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-14T15:20:12,176                    from /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-14T15:20:12,177                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1230:
2024-02-14T15:20:12,177   /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-14T15:20:12,177      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-14T15:20:12,177         |  ^~~~~~~
2024-02-14T15:20:13,721   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2024-02-14T15:20:13,721   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19783:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-02-14T15:20:13,721   19783 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2024-02-14T15:20:13,722         |                       ~~~~~~~~~~^~~~~~~~~~~
2024-02-14T15:20:13,722   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19795:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-02-14T15:20:13,722   19795 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2024-02-14T15:20:13,722         |                         ~~~~~~~~~~^~~~~~~~~~~
2024-02-14T15:20:13,722   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19807:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-02-14T15:20:13,722   19807 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2024-02-14T15:20:13,722         |                           ~~~~~~~~~~^~~~~~~~~~~
2024-02-14T15:20:13,723   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19846:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-14T15:20:13,723   19846 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-02-14T15:20:13,723         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-14T15:20:13,723   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19885:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-14T15:20:13,723   19885 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-02-14T15:20:13,723         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-14T15:20:13,724   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19924:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-14T15:20:13,724   19924 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-14T15:20:13,724         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-14T15:20:13,724   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19963:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-14T15:20:13,724   19963 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-02-14T15:20:13,724         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-14T15:20:13,724   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19969:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-14T15:20:13,725   19969 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-02-14T15:20:13,725         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-14T15:20:13,725   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20010:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-14T15:20:13,725   20010 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-02-14T15:20:13,725         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-14T15:20:13,725   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20016:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-14T15:20:13,725   20016 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-14T15:20:13,726         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-14T15:20:13,726   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20057:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-14T15:20:13,726   20057 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-02-14T15:20:13,726         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-14T15:20:13,726   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20063:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-14T15:20:13,726   20063 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-14T15:20:13,726         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-14T15:20:13,726   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20104:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-14T15:20:13,727   20104 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-02-14T15:20:13,727         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-14T15:20:13,727   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20157:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-14T15:20:13,727   20157 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-14T15:20:13,727         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-14T15:20:13,728   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20204:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-14T15:20:13,728   20204 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-14T15:20:13,728         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-14T15:20:13,728   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20245:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-14T15:20:13,728   20245 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-02-14T15:20:13,728         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-14T15:20:13,729   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20251:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-14T15:20:13,729   20251 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-02-14T15:20:13,729         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-14T15:20:13,729   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20257:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-14T15:20:13,729   20257 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-14T15:20:13,729         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-14T15:20:13,729   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20304:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-14T15:20:13,730   20304 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-02-14T15:20:13,730         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-14T15:20:13,730   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20310:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-14T15:20:13,730   20310 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-14T15:20:13,730         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-14T15:20:13,730   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20351:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-14T15:20:13,730   20351 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-02-14T15:20:13,731         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-14T15:20:13,731   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20363:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-14T15:20:13,731   20363 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-14T15:20:13,731         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-14T15:20:13,731   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20416:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-14T15:20:13,731   20416 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-14T15:20:13,731         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-14T15:20:13,750   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2024-02-14T15:20:13,751   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21038:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-02-14T15:20:13,751   21038 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2024-02-14T15:20:13,751         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2024-02-14T15:20:13,751   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21075:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-02-14T15:20:13,751   21075 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2024-02-14T15:20:13,751         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-02-14T15:20:36,872   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so
2024-02-14T15:20:37,176   building 'moleculekit.atomselect_utils' extension
2024-02-14T15:20:37,177   creating build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-02-14T15:20:37,177   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -O3
2024-02-14T15:20:37,413   In file included from /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-14T15:20:37,413                    from /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-14T15:20:37,413                    from /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-14T15:20:37,413                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1247:
2024-02-14T15:20:37,414   /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-14T15:20:37,414      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-14T15:20:37,414         |  ^~~~~~~
2024-02-14T15:20:39,124   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2024-02-14T15:20:39,124   moleculekit/atomselect_utils/atomselect_utils.cpp:23237:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-02-14T15:20:39,124   23237 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2024-02-14T15:20:39,125         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-02-14T15:20:39,129   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-02-14T15:20:39,129   moleculekit/atomselect_utils/atomselect_utils.cpp:23489:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-02-14T15:20:39,130   23489 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-02-14T15:20:39,130         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-02-14T15:20:39,135   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-02-14T15:20:39,135   moleculekit/atomselect_utils/atomselect_utils.cpp:23756:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-02-14T15:20:39,135   23756 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-02-14T15:20:39,135         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-02-14T15:21:09,277   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so
2024-02-14T15:21:09,601   building 'moleculekit.distance_utils' extension
2024-02-14T15:21:09,602   creating build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-02-14T15:21:09,603   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -O3
2024-02-14T15:21:09,887   In file included from /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-14T15:21:09,888                    from /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-14T15:21:09,888                    from /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-14T15:21:09,888                    from moleculekit/distance_utils/distance_utils.cpp:1230:
2024-02-14T15:21:09,888   /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-14T15:21:09,888      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-14T15:21:09,889         |  ^~~~~~~
2024-02-14T15:21:46,865   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so
2024-02-14T15:21:47,195   building 'moleculekit.occupancy_utils' extension
2024-02-14T15:21:47,196   creating build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-02-14T15:21:47,197   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -O3
2024-02-14T15:21:47,465   In file included from /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-14T15:21:47,465                    from /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-14T15:21:47,465                    from /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-14T15:21:47,465                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1230:
2024-02-14T15:21:47,466   /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-14T15:21:47,466      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-14T15:21:47,466         |  ^~~~~~~
2024-02-14T15:22:10,695   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so
2024-02-14T15:22:10,983   building 'moleculekit.cython_utils' extension
2024-02-14T15:22:10,984   creating build/temp.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-02-14T15:22:10,985   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/cython_utils/cython_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.o -O3
2024-02-14T15:22:11,251   In file included from /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-14T15:22:11,251                    from /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-14T15:22:11,251                    from /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-14T15:22:11,251                    from moleculekit/cython_utils/cython_utils.cpp:1230:
2024-02-14T15:22:11,251   /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-14T15:22:11,252      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-14T15:22:11,252         |  ^~~~~~~
2024-02-14T15:22:36,826   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils.cpython-39-arm-linux-gnueabihf.so
2024-02-14T15:22:37,178   building 'moleculekit.xtc' extension
2024-02-14T15:22:37,180   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats
2024-02-14T15:22:37,180   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-02-14T15:22:37,181   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-02-14T15:22:37,183   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o
2024-02-14T15:22:37,443   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-14T15:22:37,443      66 |  "OK",
2024-02-14T15:22:37,443         |  ^~~~
2024-02-14T15:22:37,443   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-14T15:22:37,443      67 |  "Header",
2024-02-14T15:22:37,444         |  ^~~~~~~~
2024-02-14T15:22:37,444   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-14T15:22:37,444      68 |  "String",
2024-02-14T15:22:37,444         |  ^~~~~~~~
2024-02-14T15:22:37,444   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-14T15:22:37,444      69 |  "Double",
2024-02-14T15:22:37,444         |  ^~~~~~~~
2024-02-14T15:22:37,445   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-14T15:22:37,445      70 |  "Integer",
2024-02-14T15:22:37,445         |  ^~~~~~~~~
2024-02-14T15:22:37,445   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-14T15:22:37,445      71 |  "Float",
2024-02-14T15:22:37,445         |  ^~~~~~~
2024-02-14T15:22:37,445   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-14T15:22:37,445      72 |  "Unsigned integer",
2024-02-14T15:22:37,446         |  ^~~~~~~~~~~~~~~~~~
2024-02-14T15:22:37,446   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-14T15:22:37,446      73 |  "Compressed 3D coordinate",
2024-02-14T15:22:37,446         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-02-14T15:22:37,446   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-14T15:22:37,446      74 |  "Closing file",
2024-02-14T15:22:37,446         |  ^~~~~~~~~~~~~~
2024-02-14T15:22:37,447   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-14T15:22:37,447      75 |  "Magic number",
2024-02-14T15:22:37,447         |  ^~~~~~~~~~~~~~
2024-02-14T15:22:37,447   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-14T15:22:37,447      76 |  "Not enough memory",
2024-02-14T15:22:37,447         |  ^~~~~~~~~~~~~~~~~~~
2024-02-14T15:22:37,447   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-14T15:22:37,447      77 |  "End of file",
2024-02-14T15:22:37,448         |  ^~~~~~~~~~~~~
2024-02-14T15:22:37,448   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-14T15:22:37,448      78 |  "File not found"
2024-02-14T15:22:37,448         |  ^~~~~~~~~~~~~~~~
2024-02-14T15:22:37,452   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-02-14T15:22:37,452   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-14T15:22:37,453     459 |     while (size >= num && num_of_bits < 32)
2024-02-14T15:22:37,453         |            ~~~~~^~~~~~
2024-02-14T15:22:37,453   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-02-14T15:22:37,453   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-14T15:22:37,453     505 |     while (bytes[num_of_bytes] >= num)
2024-02-14T15:22:37,453         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-02-14T15:22:37,455   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-02-14T15:22:37,456   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-14T15:22:37,456     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-02-14T15:22:37,456         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-02-14T15:22:37,456   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-14T15:22:37,456     616 |   for (i = 0; i < num_of_bytes; i++)
2024-02-14T15:22:37,456         |               ~~^~~~~~~~~~~~~~
2024-02-14T15:22:37,457   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-14T15:22:37,457     624 |   for (i = 0; i < num_of_bytes-1; i++)
2024-02-14T15:22:37,457         |               ~~^~~~~~~~~~~~~~~~
2024-02-14T15:22:37,457   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-02-14T15:22:37,457   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-14T15:22:37,457     664 |   if (lastbits < num_of_bits)
2024-02-14T15:22:37,457         |       ~~~~~~~~~^~~~~~~~~~~~~
2024-02-14T15:22:37,461   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-02-14T15:22:37,461   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-14T15:22:37,461     785 |  if(size3>xfp->buf1size)
2024-02-14T15:22:37,461         |     ~~~~~^~~~~~~~~~~~~~
2024-02-14T15:22:37,463   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-14T15:22:37,463     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-02-14T15:22:37,463         |                   ^
2024-02-14T15:22:37,465   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-14T15:22:37,465     932 |     if(countmjh >= size3 ) { return -1; }
2024-02-14T15:22:37,466         |        ~~~~~~~~~^~~~~~~~
2024-02-14T15:22:37,466   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-14T15:22:37,466     935 |     if(countmjh >= size3 ) { return -1; }
2024-02-14T15:22:37,466         |        ~~~~~~~~~^~~~~~~~
2024-02-14T15:22:37,466   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-14T15:22:37,466     938 |     if(countmjh >= size3 ) { return -1; }
2024-02-14T15:22:37,466         |        ~~~~~~~~~^~~~~~~~
2024-02-14T15:22:37,467   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-14T15:22:37,467     945 |     if(countmjh >= size3 ) { return -1; }
2024-02-14T15:22:37,467         |        ~~~~~~~~~^~~~~~~~
2024-02-14T15:22:37,467   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-14T15:22:37,467     948 |     if(countmjh >= size3 ) { return -1; }
2024-02-14T15:22:37,467         |        ~~~~~~~~~^~~~~~~~
2024-02-14T15:22:37,467   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-14T15:22:37,467     951 |     if(countmjh >= size3 ) { return -1; }
2024-02-14T15:22:37,468         |        ~~~~~~~~~^~~~~~~~
2024-02-14T15:22:37,468   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-02-14T15:22:37,468     756 |  int smallidx,  minidx, maxidx;
2024-02-14T15:22:37,468         |                 ^~~~~~
2024-02-14T15:22:37,468   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-02-14T15:22:37,468     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-02-14T15:22:37,468         |                         ^~~~~~
2024-02-14T15:22:37,468   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-02-14T15:22:37,469     763 |  int errval=1;
2024-02-14T15:22:37,469         |      ^~~~~~
2024-02-14T15:22:37,469   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-02-14T15:22:37,470   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-14T15:22:37,470    1011 |  if(size3>xfp->buf1size)
2024-02-14T15:22:37,470         |     ~~~~~^~~~~~~~~~~~~~
2024-02-14T15:22:37,472   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-14T15:22:37,472    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2024-02-14T15:22:37,472         |                     ~~~~~~~~^~~~~~~
2024-02-14T15:22:37,472   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-14T15:22:37,472    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2024-02-14T15:22:37,473         |                    ~~~~~~~~^~~~~~~
2024-02-14T15:22:37,473   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-14T15:22:37,473    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2024-02-14T15:22:37,473         |                    ~~~~~~~~^~~~~~~
2024-02-14T15:22:37,475   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-14T15:22:37,475    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-02-14T15:22:37,475         |                  ^
2024-02-14T15:22:37,475   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-14T15:22:37,475    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-02-14T15:22:37,475         |                   ^
2024-02-14T15:22:37,479   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-14T15:22:37,479    1275 |  if(tmp==(unsigned int)buf2[0])
2024-02-14T15:22:37,479         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-02-14T15:22:37,479   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-02-14T15:22:37,479    1001 |  int errval;
2024-02-14T15:22:37,480         |      ^~~~~~
2024-02-14T15:22:37,482   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-02-14T15:22:37,482   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-14T15:22:37,482    1316 |  if(size3>xfp->buf1size)
2024-02-14T15:22:37,483         |     ~~~~~^~~~~~~~~~~~~~
2024-02-14T15:22:37,484   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-14T15:22:37,484    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-02-14T15:22:37,484         |                   ^
2024-02-14T15:22:37,487   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-02-14T15:22:37,487    1289 |  int smallidx,  maxidx, minidx;
2024-02-14T15:22:37,487         |                         ^~~~~~
2024-02-14T15:22:37,487   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-02-14T15:22:37,488    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-02-14T15:22:37,488         |                         ^~~~~~
2024-02-14T15:22:37,488   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-02-14T15:22:37,488    1297 |  int errval=1;
2024-02-14T15:22:37,488         |      ^~~~~~
2024-02-14T15:22:37,489   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-02-14T15:22:37,489   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-14T15:22:37,489    1513 |  if(size3>xfp->buf1size) {
2024-02-14T15:22:37,490         |     ~~~~~^~~~~~~~~~~~~~
2024-02-14T15:22:37,493   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-14T15:22:37,494    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-02-14T15:22:37,494         |                  ^
2024-02-14T15:22:37,494   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-14T15:22:37,494    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-02-14T15:22:37,494         |                   ^
2024-02-14T15:22:37,498   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-14T15:22:37,498    1743 |  if(tmp==(unsigned int)buf2[0])
2024-02-14T15:22:37,498         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-02-14T15:22:37,498   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-02-14T15:22:37,498    1504 |  int errval=1;
2024-02-14T15:22:37,498         |      ^~~~~~
2024-02-14T15:22:39,786   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.o
2024-02-14T15:22:40,072   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.o
2024-02-14T15:22:41,164   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2024-02-14T15:22:41,164   moleculekit/fileformats/xtc/src/xtc.cpp:238:23: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-14T15:22:41,164     238 |   for (aidx = 0; aidx < natoms; aidx++)
2024-02-14T15:22:41,164         |                  ~~~~~^~~~~~~~
2024-02-14T15:22:41,165   moleculekit/fileformats/xtc/src/xtc.cpp:207:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2024-02-14T15:22:41,165     207 |  int nf3 = nframes * 3; // Precalculate 3 * nframes for the coordinate lookup macro
2024-02-14T15:22:41,165         |      ^~~
2024-02-14T15:22:41,171   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2024-02-14T15:22:41,172   moleculekit/fileformats/xtc/src/xtc.cpp:418:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2024-02-14T15:22:41,172     418 |  int nf3 = nframes * 3;
2024-02-14T15:22:41,172         |      ^~~
2024-02-14T15:22:41,174   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2024-02-14T15:22:41,174   moleculekit/fileformats/xtc/src/xtc.cpp:548:24: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-14T15:22:41,174     548 |    for (aidx = 0; aidx < natoms; aidx++)
2024-02-14T15:22:41,174         |                   ~~~~~^~~~~~~~
2024-02-14T15:22:41,176   moleculekit/fileformats/xtc/src/xtc.cpp:617:24: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-14T15:22:41,176     617 |    for (aidx = 0; aidx < natoms; aidx++)
2024-02-14T15:22:41,176         |                   ~~~~~^~~~~~~~
2024-02-14T15:22:41,177   moleculekit/fileformats/xtc/src/xtc.cpp:491:6: warning: unused variable ‘reading_index’ [-Wunused-variable]
2024-02-14T15:22:41,177     491 |  int reading_index = 0;
2024-02-14T15:22:41,177         |      ^~~~~~~~~~~~~
2024-02-14T15:22:41,177   moleculekit/fileformats/xtc/src/xtc.cpp:492:6: warning: unused variable ‘writing_index’ [-Wunused-variable]
2024-02-14T15:22:41,177     492 |  int writing_index = 0;
2024-02-14T15:22:41,177         |      ^~~~~~~~~~~~~
2024-02-14T15:22:42,018   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.o
2024-02-14T15:22:43,789   In file included from /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-14T15:22:43,789                    from /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-14T15:22:43,789                    from /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-14T15:22:43,789                    from moleculekit/fileformats/xtc/xtc.cpp:1234:
2024-02-14T15:22:43,789   /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-14T15:22:43,789      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-14T15:22:43,789         |  ^~~~~~~
2024-02-14T15:23:04,196   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so
2024-02-14T15:23:04,506   building 'moleculekit.trr' extension
2024-02-14T15:23:04,507   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdr_seek.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.o
2024-02-14T15:23:04,624   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o
2024-02-14T15:23:04,857   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-14T15:23:04,858      66 |  "OK",
2024-02-14T15:23:04,858         |  ^~~~
2024-02-14T15:23:04,858   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-14T15:23:04,858      67 |  "Header",
2024-02-14T15:23:04,859         |  ^~~~~~~~
2024-02-14T15:23:04,859   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-14T15:23:04,859      68 |  "String",
2024-02-14T15:23:04,859         |  ^~~~~~~~
2024-02-14T15:23:04,859   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-14T15:23:04,860      69 |  "Double",
2024-02-14T15:23:04,860         |  ^~~~~~~~
2024-02-14T15:23:04,860   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-14T15:23:04,860      70 |  "Integer",
2024-02-14T15:23:04,860         |  ^~~~~~~~~
2024-02-14T15:23:04,861   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-14T15:23:04,861      71 |  "Float",
2024-02-14T15:23:04,861         |  ^~~~~~~
2024-02-14T15:23:04,861   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-14T15:23:04,861      72 |  "Unsigned integer",
2024-02-14T15:23:04,862         |  ^~~~~~~~~~~~~~~~~~
2024-02-14T15:23:04,862   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-14T15:23:04,862      73 |  "Compressed 3D coordinate",
2024-02-14T15:23:04,862         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-02-14T15:23:04,862   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-14T15:23:04,863      74 |  "Closing file",
2024-02-14T15:23:04,863         |  ^~~~~~~~~~~~~~
2024-02-14T15:23:04,863   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-14T15:23:04,863      75 |  "Magic number",
2024-02-14T15:23:04,863         |  ^~~~~~~~~~~~~~
2024-02-14T15:23:04,864   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-14T15:23:04,864      76 |  "Not enough memory",
2024-02-14T15:23:04,864         |  ^~~~~~~~~~~~~~~~~~~
2024-02-14T15:23:04,864   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-14T15:23:04,865      77 |  "End of file",
2024-02-14T15:23:04,865         |  ^~~~~~~~~~~~~
2024-02-14T15:23:04,865   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-14T15:23:04,865      78 |  "File not found"
2024-02-14T15:23:04,865         |  ^~~~~~~~~~~~~~~~
2024-02-14T15:23:04,871   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-02-14T15:23:04,871   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-14T15:23:04,872     459 |     while (size >= num && num_of_bits < 32)
2024-02-14T15:23:04,872         |            ~~~~~^~~~~~
2024-02-14T15:23:04,872   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-02-14T15:23:04,873   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-14T15:23:04,873     505 |     while (bytes[num_of_bytes] >= num)
2024-02-14T15:23:04,873         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-02-14T15:23:04,876   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-02-14T15:23:04,876   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-14T15:23:04,876     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-02-14T15:23:04,876         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-02-14T15:23:04,877   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-14T15:23:04,877     616 |   for (i = 0; i < num_of_bytes; i++)
2024-02-14T15:23:04,877         |               ~~^~~~~~~~~~~~~~
2024-02-14T15:23:04,877   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-14T15:23:04,877     624 |   for (i = 0; i < num_of_bytes-1; i++)
2024-02-14T15:23:04,878         |               ~~^~~~~~~~~~~~~~~~
2024-02-14T15:23:04,878   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-02-14T15:23:04,878   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-14T15:23:04,878     664 |   if (lastbits < num_of_bits)
2024-02-14T15:23:04,879         |       ~~~~~~~~~^~~~~~~~~~~~~
2024-02-14T15:23:04,883   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-02-14T15:23:04,883   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-14T15:23:04,884     785 |  if(size3>xfp->buf1size)
2024-02-14T15:23:04,884         |     ~~~~~^~~~~~~~~~~~~~
2024-02-14T15:23:04,886   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-14T15:23:04,886     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-02-14T15:23:04,886         |                   ^
2024-02-14T15:23:04,890   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-14T15:23:04,890     932 |     if(countmjh >= size3 ) { return -1; }
2024-02-14T15:23:04,890         |        ~~~~~~~~~^~~~~~~~
2024-02-14T15:23:04,891   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-14T15:23:04,891     935 |     if(countmjh >= size3 ) { return -1; }
2024-02-14T15:23:04,891         |        ~~~~~~~~~^~~~~~~~
2024-02-14T15:23:04,891   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-14T15:23:04,891     938 |     if(countmjh >= size3 ) { return -1; }
2024-02-14T15:23:04,892         |        ~~~~~~~~~^~~~~~~~
2024-02-14T15:23:04,892   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-14T15:23:04,892     945 |     if(countmjh >= size3 ) { return -1; }
2024-02-14T15:23:04,892         |        ~~~~~~~~~^~~~~~~~
2024-02-14T15:23:04,892   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-14T15:23:04,893     948 |     if(countmjh >= size3 ) { return -1; }
2024-02-14T15:23:04,893         |        ~~~~~~~~~^~~~~~~~
2024-02-14T15:23:04,893   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-14T15:23:04,893     951 |     if(countmjh >= size3 ) { return -1; }
2024-02-14T15:23:04,893         |        ~~~~~~~~~^~~~~~~~
2024-02-14T15:23:04,893   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-02-14T15:23:04,894     756 |  int smallidx,  minidx, maxidx;
2024-02-14T15:23:04,894         |                 ^~~~~~
2024-02-14T15:23:04,894   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-02-14T15:23:04,894     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-02-14T15:23:04,894         |                         ^~~~~~
2024-02-14T15:23:04,894   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-02-14T15:23:04,895     763 |  int errval=1;
2024-02-14T15:23:04,895         |      ^~~~~~
2024-02-14T15:23:04,896   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-02-14T15:23:04,896   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-14T15:23:04,896    1011 |  if(size3>xfp->buf1size)
2024-02-14T15:23:04,897         |     ~~~~~^~~~~~~~~~~~~~
2024-02-14T15:23:04,899   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-14T15:23:04,899    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2024-02-14T15:23:04,899         |                     ~~~~~~~~^~~~~~~
2024-02-14T15:23:04,900   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-14T15:23:04,900    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2024-02-14T15:23:04,900         |                    ~~~~~~~~^~~~~~~
2024-02-14T15:23:04,901   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-14T15:23:04,901    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2024-02-14T15:23:04,901         |                    ~~~~~~~~^~~~~~~
2024-02-14T15:23:04,903   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-14T15:23:04,903    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-02-14T15:23:04,904         |                  ^
2024-02-14T15:23:04,904   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-14T15:23:04,904    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-02-14T15:23:04,904         |                   ^
2024-02-14T15:23:04,909   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-14T15:23:04,910    1275 |  if(tmp==(unsigned int)buf2[0])
2024-02-14T15:23:04,910         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-02-14T15:23:04,910   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-02-14T15:23:04,910    1001 |  int errval;
2024-02-14T15:23:04,910         |      ^~~~~~
2024-02-14T15:23:04,914   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-02-14T15:23:04,914   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-14T15:23:04,914    1316 |  if(size3>xfp->buf1size)
2024-02-14T15:23:04,915         |     ~~~~~^~~~~~~~~~~~~~
2024-02-14T15:23:04,917   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-14T15:23:04,917    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-02-14T15:23:04,917         |                   ^
2024-02-14T15:23:04,921   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-02-14T15:23:04,921    1289 |  int smallidx,  maxidx, minidx;
2024-02-14T15:23:04,922         |                         ^~~~~~
2024-02-14T15:23:04,922   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-02-14T15:23:04,922    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-02-14T15:23:04,922         |                         ^~~~~~
2024-02-14T15:23:04,922   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-02-14T15:23:04,922    1297 |  int errval=1;
2024-02-14T15:23:04,923         |      ^~~~~~
2024-02-14T15:23:04,924   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-02-14T15:23:04,925   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-14T15:23:04,925    1513 |  if(size3>xfp->buf1size) {
2024-02-14T15:23:04,925         |     ~~~~~^~~~~~~~~~~~~~
2024-02-14T15:23:04,931   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-14T15:23:04,931    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-02-14T15:23:04,931         |                  ^
2024-02-14T15:23:04,931   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-14T15:23:04,932    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-02-14T15:23:04,932         |                   ^
2024-02-14T15:23:04,937   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-14T15:23:04,937    1743 |  if(tmp==(unsigned int)buf2[0])
2024-02-14T15:23:04,937         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-02-14T15:23:04,937   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-02-14T15:23:04,938    1504 |  int errval=1;
2024-02-14T15:23:04,938         |      ^~~~~~
2024-02-14T15:23:07,173   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile_trr.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.o
2024-02-14T15:23:07,265   moleculekit/fileformats/xtc/src/xdrfile_trr.c: In function ‘do_trnheader’:
2024-02-14T15:23:07,266   moleculekit/fileformats/xtc/src/xdrfile_trr.c:111:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-02-14T15:23:07,266     111 |         if (slen != strlen(version)+1)
2024-02-14T15:23:07,266         |                  ^~
2024-02-14T15:23:07,267   moleculekit/fileformats/xtc/src/xdrfile_trr.c:121:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-02-14T15:23:07,267     121 |         if (xdrfile_write_string(version,xd) != (strlen(version)+1) )
2024-02-14T15:23:07,267         |                                              ^~
2024-02-14T15:23:07,833   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/trr.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.o
2024-02-14T15:23:08,154   In file included from /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-14T15:23:08,155                    from /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-14T15:23:08,155                    from /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-14T15:23:08,155                    from moleculekit/fileformats/xtc/trr.c:1226:
2024-02-14T15:23:08,155   /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-14T15:23:08,155      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-14T15:23:08,155         |  ^~~~~~~
2024-02-14T15:23:08,791   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_22_calc_len_and_offsets’:
2024-02-14T15:23:08,799   moleculekit/fileformats/xtc/trr.c:16334:37: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare]
2024-02-14T15:23:08,799   16334 |       __pyx_t_6 = (__pyx_v_n_frames == __pyx_t_14);
2024-02-14T15:23:08,799         |                                     ^~
2024-02-14T15:23:29,157   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pw_11moleculekit_3trr_17TRRTrajectoryFile_17_write’:
2024-02-14T15:23:29,157   moleculekit/fileformats/xtc/trr.c:1128:40: warning: ‘__pyx_v_status’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-14T15:23:29,157    1128 |   #define PyInt_FromLong               PyLong_FromLong
2024-02-14T15:23:29,158         |                                        ^~~~~~~~~~~~~~~
2024-02-14T15:23:29,166   moleculekit/fileformats/xtc/trr.c:14242:7: note: ‘__pyx_v_status’ was declared here
2024-02-14T15:23:29,166   14242 |   int __pyx_v_status;
2024-02-14T15:23:29,166         |       ^~~~~~~~~~~~~~
2024-02-14T15:23:39,522   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_12_read’:
2024-02-14T15:23:39,529   moleculekit/fileformats/xtc/trr.c:11541:19: warning: ‘__pyx_pybuffernd_forces.diminfo[2].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-14T15:23:39,529   11541 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_forces.diminfo[2].shape)) __pyx_t_4 = 2;
2024-02-14T15:23:39,529         |                   ^
2024-02-14T15:23:39,536   moleculekit/fileformats/xtc/trr.c:11537:19: warning: ‘__pyx_pybuffernd_forces.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-14T15:23:39,536   11537 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_forces.diminfo[1].shape)) __pyx_t_4 = 1;
2024-02-14T15:23:39,536         |                   ^
2024-02-14T15:23:39,537   moleculekit/fileformats/xtc/trr.c:2491:95: warning: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-14T15:23:39,537    2491 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-02-14T15:23:39,537         |                                                                                               ^
2024-02-14T15:23:39,543   moleculekit/fileformats/xtc/trr.c:10073:21: note: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ was declared here
2024-02-14T15:23:39,543   10073 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-02-14T15:23:39,543         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-02-14T15:23:39,549   moleculekit/fileformats/xtc/trr.c:11531:59: warning: ‘__pyx_pybuffernd_forces.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-14T15:23:39,549   11531 |           __pyx_t_28 += __pyx_pybuffernd_forces.diminfo[0].shape;
2024-02-14T15:23:39,549         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-02-14T15:23:39,556   moleculekit/fileformats/xtc/trr.c:11484:19: warning: ‘__pyx_pybuffernd_vel.diminfo[2].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-14T15:23:39,556   11484 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_vel.diminfo[2].shape)) __pyx_t_4 = 2;
2024-02-14T15:23:39,556         |                   ^
2024-02-14T15:23:39,563   moleculekit/fileformats/xtc/trr.c:11480:19: warning: ‘__pyx_pybuffernd_vel.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-14T15:23:39,563   11480 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_vel.diminfo[1].shape)) __pyx_t_4 = 1;
2024-02-14T15:23:39,563         |                   ^
2024-02-14T15:23:39,564   moleculekit/fileformats/xtc/trr.c:2491:95: warning: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-14T15:23:39,564    2491 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-02-14T15:23:39,564         |                                                                                               ^
2024-02-14T15:23:39,569   moleculekit/fileformats/xtc/trr.c:10089:21: note: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ was declared here
2024-02-14T15:23:39,570   10089 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-02-14T15:23:39,570         |                     ^~~~~~~~~~~~~~~~~~~~
2024-02-14T15:23:39,575   moleculekit/fileformats/xtc/trr.c:11474:56: warning: ‘__pyx_pybuffernd_vel.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-14T15:23:39,576   11474 |           __pyx_t_28 += __pyx_pybuffernd_vel.diminfo[0].shape;
2024-02-14T15:23:39,576         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-02-14T15:23:39,581   moleculekit/fileformats/xtc/trr.c:11873:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-14T15:23:39,582   11873 |       } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_xyz_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-02-14T15:23:39,582         |                 ^
2024-02-14T15:23:39,589   moleculekit/fileformats/xtc/trr.c:11869:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-14T15:23:39,589   11869 |       } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_xyz_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-02-14T15:23:39,589         |                 ^
2024-02-14T15:23:39,596   moleculekit/fileformats/xtc/trr.c:11714:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-14T15:23:39,596   11714 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_vel_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-02-14T15:23:39,596         |                   ^
2024-02-14T15:23:39,603   moleculekit/fileformats/xtc/trr.c:11710:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-14T15:23:39,603   11710 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_vel_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-02-14T15:23:39,603         |                   ^
2024-02-14T15:23:39,609   moleculekit/fileformats/xtc/trr.c:11766:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-14T15:23:39,609   11766 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_forces_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-02-14T15:23:39,609         |                   ^
2024-02-14T15:23:39,616   moleculekit/fileformats/xtc/trr.c:11762:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-14T15:23:39,616   11762 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_forces_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-02-14T15:23:39,616         |                   ^
2024-02-14T15:23:46,052   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/trr.cpython-39-arm-linux-gnueabihf.so
2024-02-14T15:23:46,244   building 'moleculekit.dcd' extension
2024-02-14T15:23:46,245   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-02-14T15:23:46,245   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-02-14T15:23:46,246   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/dcd/dcd.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.o
2024-02-14T15:23:46,578   In file included from /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-14T15:23:46,579                    from /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-14T15:23:46,579                    from /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-14T15:23:46,579                    from moleculekit/fileformats/dcd/dcd.c:1221:
2024-02-14T15:23:46,579   /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-14T15:23:46,579      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-14T15:23:46,579         |  ^~~~~~~
2024-02-14T15:23:47,604   In file included from moleculekit/fileformats/dcd/include/dcdplugin.h:1,
2024-02-14T15:23:47,604                    from moleculekit/fileformats/dcd/dcd.c:1227:
2024-02-14T15:23:47,604   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-02-14T15:23:47,605     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-02-14T15:23:47,605         |            ^~~~~~~~~~~~~
2024-02-14T15:23:47,605   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-02-14T15:23:47,605     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-02-14T15:23:47,605         |            ^~~~~~~~~~~~~~
2024-02-14T15:23:47,605   moleculekit/fileformats/dcd/include/fastio.h:466:12: warning: ‘fio_write_int32’ defined but not used [-Wunused-function]
2024-02-14T15:23:47,606     466 | static int fio_write_int32(fio_fd fd, int i) {
2024-02-14T15:23:47,606         |            ^~~~~~~~~~~~~~~
2024-02-14T15:23:47,606   moleculekit/fileformats/dcd/include/fastio.h:457:19: warning: ‘fio_ftell’ defined but not used [-Wunused-function]
2024-02-14T15:23:47,606     457 | static fio_size_t fio_ftell(fio_fd fd) {
2024-02-14T15:23:47,606         |                   ^~~~~~~~~
2024-02-14T15:23:47,606   moleculekit/fileformats/dcd/include/fastio.h:450:19: warning: ‘fio_fseek’ defined but not used [-Wunused-function]
2024-02-14T15:23:47,606     450 | static fio_size_t fio_fseek(fio_fd fd, fio_size_t offset, int whence) {
2024-02-14T15:23:47,606         |                   ^~~~~~~~~
2024-02-14T15:23:47,607   moleculekit/fileformats/dcd/include/fastio.h:415:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
2024-02-14T15:23:47,607     415 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
2024-02-14T15:23:47,607         |                   ^~~~~~~~~
2024-02-14T15:23:47,607   moleculekit/fileformats/dcd/include/fastio.h:394:12: warning: ‘fio_fclose’ defined but not used [-Wunused-function]
2024-02-14T15:23:47,607     394 | static int fio_fclose(fio_fd fd) {
2024-02-14T15:23:47,607         |            ^~~~~~~~~~
2024-02-14T15:23:47,607   moleculekit/fileformats/dcd/include/fastio.h:366:12: warning: ‘fio_open’ defined but not used [-Wunused-function]
2024-02-14T15:23:47,607     366 | static int fio_open(const char *filename, int mode, fio_fd *fd) {
2024-02-14T15:23:47,607         |            ^~~~~~~~
2024-02-14T15:24:00,237   moleculekit/fileformats/dcd/dcd.c: In function ‘__pyx_pf_11moleculekit_3dcd_17DCDTrajectoryFile_18read’:
2024-02-14T15:24:00,237   moleculekit/fileformats/dcd/dcd.c:1123:40: warning: ‘__pyx_v_i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-14T15:24:00,237    1123 |   #define PyInt_FromLong               PyLong_FromLong
2024-02-14T15:24:00,238         |                                        ^~~~~~~~~~~~~~~
2024-02-14T15:24:00,242   moleculekit/fileformats/dcd/dcd.c:8004:7: note: ‘__pyx_v_i’ was declared here
2024-02-14T15:24:00,242    8004 |   int __pyx_v_i;
2024-02-14T15:24:00,242         |       ^~~~~~~~~
2024-02-14T15:24:03,469   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/dcd/src/dcdplugin.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.o
2024-02-14T15:24:03,650   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdheader’:
2024-02-14T15:24:03,651   moleculekit/fileformats/dcd/src/dcdplugin.c:150:55: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-14T15:24:03,651     150 |   else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-02-14T15:24:03,651         |                                                       ^~
2024-02-14T15:24:03,652   moleculekit/fileformats/dcd/src/dcdplugin.c:173:54: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-14T15:24:03,652     173 |       if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-02-14T15:24:03,652         |                                                      ^~
2024-02-14T15:24:03,653   moleculekit/fileformats/dcd/src/dcdplugin.c:194:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-14T15:24:03,653     194 |     if (input_integer[0] != dcdcordmagic)
2024-02-14T15:24:03,653         |                          ^~
2024-02-14T15:24:03,657   moleculekit/fileformats/dcd/src/dcdplugin.c:409:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-14T15:24:03,657     409 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-02-14T15:24:03,657         |                                               ^~
2024-02-14T15:24:03,658   moleculekit/fileformats/dcd/src/dcdplugin.c:428:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-14T15:24:03,658     428 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-02-14T15:24:03,658         |                                               ^~
2024-02-14T15:24:03,662   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdstep’:
2024-02-14T15:24:03,663   moleculekit/fileformats/dcd/src/dcdplugin.c:651:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-14T15:24:03,663     651 |         if (tmpbuf[i] != sizeof(float) * N)
2024-02-14T15:24:03,663         |                       ^~
2024-02-14T15:24:03,664   moleculekit/fileformats/dcd/src/dcdplugin.c:659:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-14T15:24:03,664     659 |         if ((tmpbuf[2 * i] + tmpbuf[2 * i + 1]) != sizeof(float) * N)
2024-02-14T15:24:03,664         |                                                 ^~
2024-02-14T15:24:03,687   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:55:
2024-02-14T15:24:03,687   At top level:
2024-02-14T15:24:03,688   moleculekit/fileformats/dcd/include/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
2024-02-14T15:24:03,688      96 | static void swap2_aligned(void *v, long ndata) {
2024-02-14T15:24:03,688         |             ^~~~~~~~~~~~~
2024-02-14T15:24:03,689   moleculekit/fileformats/dcd/include/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
2024-02-14T15:24:03,689      32 | static void swap2_unaligned(void *v, long ndata) {
2024-02-14T15:24:03,689         |             ^~~~~~~~~~~~~~~
2024-02-14T15:24:03,689   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:46:
2024-02-14T15:24:03,689   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-02-14T15:24:03,689     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-02-14T15:24:03,689         |            ^~~~~~~~~~~~~
2024-02-14T15:24:03,690   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-02-14T15:24:03,690     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-02-14T15:24:03,690         |            ^~~~~~~~~~~~~~
2024-02-14T15:24:04,796   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so
2024-02-14T15:24:04,933   building 'moleculekit.binpos' extension
2024-02-14T15:24:04,934   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-02-14T15:24:04,935   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-02-14T15:24:04,936   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/binpos/binpos.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.o
2024-02-14T15:24:05,253   In file included from /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-14T15:24:05,253                    from /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-14T15:24:05,254                    from /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-14T15:24:05,254                    from moleculekit/fileformats/binpos/binpos.c:1221:
2024-02-14T15:24:05,254   /tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-14T15:24:05,254      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-14T15:24:05,254         |  ^~~~~~~
2024-02-14T15:24:18,689   moleculekit/fileformats/binpos/binpos.c: In function ‘__pyx_pw_11moleculekit_6binpos_20BINPOSTrajectoryFile_7_read’:
2024-02-14T15:24:18,693   moleculekit/fileformats/binpos/binpos.c:8027:6: warning: ‘__pyx_v_status’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-14T15:24:18,693    8027 |   if (__pyx_t_1) {
2024-02-14T15:24:18,693         |      ^
2024-02-14T15:24:18,697   moleculekit/fileformats/binpos/binpos.c:7504:7: note: ‘__pyx_v_status’ was declared here
2024-02-14T15:24:18,697    7504 |   int __pyx_v_status;
2024-02-14T15:24:18,697         |       ^~~~~~~~~~~~~~
2024-02-14T15:24:18,698   moleculekit/fileformats/binpos/binpos.c:1123:40: warning: ‘__pyx_v_i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-14T15:24:18,698    1123 |   #define PyInt_FromLong               PyLong_FromLong
2024-02-14T15:24:18,698         |                                        ^~~~~~~~~~~~~~~
2024-02-14T15:24:18,702   moleculekit/fileformats/binpos/binpos.c:7501:7: note: ‘__pyx_v_i’ was declared here
2024-02-14T15:24:18,702    7501 |   int __pyx_v_i;
2024-02-14T15:24:18,703         |       ^~~~~~~~~
2024-02-14T15:24:20,936   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/binpos/src/binposplugin.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.o
2024-02-14T15:24:21,239   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so
2024-02-14T15:24:21,382   building 'moleculekit.tmalign' extension
2024-02-14T15:24:21,383   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign
2024-02-14T15:24:21,384   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-02-14T15:24:21,385   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o -w
2024-02-14T15:24:51,072   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-xn0n9va4/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -w
2024-02-14T15:25:09,513   In file included from /usr/include/c++/10/vector:72,
2024-02-14T15:25:09,514                    from moleculekit/tmalign/tmalign_util.cpp:1245:
2024-02-14T15:25:09,514   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2024-02-14T15:25:09,514   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2024-02-14T15:25:09,514     426 |       vector<_Tp, _Alloc>::
2024-02-14T15:25:09,514         |       ^~~~~~~~~~~~~~~~~~~
2024-02-14T15:25:10,091   In file included from /usr/include/c++/10/vector:67,
2024-02-14T15:25:10,091                    from moleculekit/tmalign/tmalign_util.cpp:1245:
2024-02-14T15:25:10,092   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2024-02-14T15:25:10,092   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-02-14T15:25:10,092    1198 |    _M_realloc_insert(end(), __x);
2024-02-14T15:25:10,092         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-02-14T15:25:10,092   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-02-14T15:25:10,092    1198 |    _M_realloc_insert(end(), __x);
2024-02-14T15:25:10,093         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-02-14T15:25:10,093   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-02-14T15:25:10,093    1198 |    _M_realloc_insert(end(), __x);
2024-02-14T15:25:10,093         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-02-14T15:25:12,536   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so
2024-02-14T15:25:12,990   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2024-02-14T15:25:12,990   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.8.21'
2024-02-14T15:25:12,990   installing to build/bdist.linux-armv7l/wheel
2024-02-14T15:25:12,991   running install
2024-02-14T15:25:13,017   running install_lib
2024-02-14T15:25:13,023   creating build/bdist.linux-armv7l
2024-02-14T15:25:13,023   creating build/bdist.linux-armv7l/wheel
2024-02-14T15:25:13,026   creating build/bdist.linux-armv7l/wheel/moleculekit
2024-02-14T15:25:13,027   copying build/lib.linux-armv7l-cpython-39/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-14T15:25:13,029   copying build/lib.linux-armv7l-cpython-39/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-14T15:25:13,032   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-02-14T15:25:13,033   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-02-14T15:25:13,056   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-02-14T15:25:13,058   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-14T15:25:13,077   copying build/lib.linux-armv7l-cpython-39/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-14T15:25:13,079   copying build/lib.linux-armv7l-cpython-39/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-14T15:25:13,082   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-02-14T15:25:13,083   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-02-14T15:25:13,086   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-02-14T15:25:13,108   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2024-02-14T15:25:13,109   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-02-14T15:25:13,309   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2024-02-14T15:25:13,313   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,314   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,316   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,318   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,320   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,322   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,324   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,326   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,327   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,329   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,331   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,333   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,335   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,337   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,339   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,341   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,343   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,345   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,346   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,348   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,349   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,351   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,353   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,355   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,357   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,359   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,361   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,362   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,364   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,366   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,368   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,370   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,372   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,373   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,375   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,377   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,379   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,381   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,382   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,384   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,386   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,388   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,389   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,391   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,393   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,395   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,396   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,398   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,400   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,402   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,404   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,405   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,407   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,408   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,410   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,412   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,414   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,416   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,417   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,419   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,421   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,423   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,425   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,426   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,428   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,429   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,431   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,433   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,435   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,437   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,438   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,440   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,442   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,444   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,446   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,449   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,451   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,453   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,455   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,456   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,458   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,460   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,461   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,463   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,465   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,466   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,468   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,470   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,472   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,473   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,475   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,477   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,478   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,480   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,482   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,484   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,485   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,487   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,489   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,490   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,492   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,494   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,496   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,497   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,499   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,501   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,503   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,504   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,506   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,508   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,510   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,511   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,513   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,515   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,516   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,518   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,520   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,521   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,523   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,525   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,526   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,528   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,531   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,533   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,535   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,537   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,539   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,542   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,544   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,547   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,549   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,551   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,554   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,556   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,558   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,561   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,563   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,565   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,567   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,570   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,572   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,574   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,576   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,578   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,580   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,582   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,585   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,587   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,589   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,591   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,594   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,596   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,599   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,601   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,603   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,606   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,608   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,611   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,614   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,616   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,619   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,621   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,623   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,625   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,628   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,629   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,631   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,633   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,635   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,637   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,639   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,641   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,642   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,644   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,646   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,648   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-14T15:25:13,650   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-02-14T15:25:13,652   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-02-14T15:25:13,654   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-02-14T15:25:13,655   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-02-14T15:25:13,658   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-14T15:25:13,659   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-14T15:25:13,661   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-14T15:25:13,664   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-14T15:25:13,666   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-14T15:25:13,668   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-14T15:25:13,671   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-14T15:25:13,674   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-14T15:25:13,676   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-14T15:25:13,679   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-14T15:25:13,680   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-14T15:25:13,683   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-14T15:25:13,685   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-14T15:25:13,687   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-14T15:25:13,690   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-14T15:25:13,692   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-14T15:25:13,694   copying build/lib.linux-armv7l-cpython-39/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-14T15:25:13,696   copying build/lib.linux-armv7l-cpython-39/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-14T15:25:13,698   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-14T15:25:13,699   copying build/lib.linux-armv7l-cpython-39/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-14T15:25:13,702   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-02-14T15:25:13,703   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-02-14T15:25:13,707   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-02-14T15:25:13,709   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-02-14T15:25:13,712   creating build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-02-14T15:25:13,713   copying build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-02-14T15:25:13,739   copying build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-02-14T15:25:13,741   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-14T15:25:13,759   copying build/lib.linux-armv7l-cpython-39/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-14T15:25:13,761   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-02-14T15:25:13,763   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-02-14T15:25:13,764   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-02-14T15:25:13,766   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-02-14T15:25:13,794   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-02-14T15:25:13,798   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-02-14T15:25:13,799   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-02-14T15:25:13,801   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-02-14T15:25:13,822   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-02-14T15:25:13,844   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-02-14T15:25:13,866   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-02-14T15:25:13,868   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-02-14T15:25:13,896   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-02-14T15:25:13,897   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-02-14T15:25:13,900   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-02-14T15:25:13,920   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-02-14T15:25:13,943   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-02-14T15:25:13,944   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-02-14T15:25:13,947   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-02-14T15:25:13,967   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-02-14T15:25:13,968   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-02-14T15:25:13,989   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-02-14T15:25:13,992   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-02-14T15:25:13,993   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-02-14T15:25:13,995   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-02-14T15:25:13,996   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-02-14T15:25:13,999   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-02-14T15:25:14,001   copying build/lib.linux-armv7l-cpython-39/moleculekit/trr.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-14T15:25:14,029   copying build/lib.linux-armv7l-cpython-39/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-14T15:25:14,031   copying build/lib.linux-armv7l-cpython-39/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-14T15:25:14,033   copying build/lib.linux-armv7l-cpython-39/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-14T15:25:14,038   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-02-14T15:25:14,040   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-02-14T15:25:14,041   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-02-14T15:25:14,043   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-02-14T15:25:14,046   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-02-14T15:25:14,047   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-02-14T15:25:14,050   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-02-14T15:25:14,052   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-02-14T15:25:14,053   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-02-14T15:25:14,056   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-02-14T15:25:14,058   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-02-14T15:25:14,060   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-02-14T15:25:14,063   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-02-14T15:25:14,064   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-02-14T15:25:14,066   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-02-14T15:25:14,068   copying build/lib.linux-armv7l-cpython-39/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-14T15:25:14,070   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-14T15:25:14,073   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-02-14T15:25:14,075   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-02-14T15:25:14,077   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-02-14T15:25:14,079   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-02-14T15:25:14,082   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-02-14T15:25:14,083   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-02-14T15:25:14,086   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-02-14T15:25:14,088   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-02-14T15:25:14,089   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-02-14T15:25:14,092   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-02-14T15:25:14,095   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-02-14T15:25:14,097   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-02-14T15:25:14,100   copying build/lib.linux-armv7l-cpython-39/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-14T15:25:14,103   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-02-14T15:25:14,104   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-02-14T15:25:14,107   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-02-14T15:25:14,129   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-02-14T15:25:14,130   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-02-14T15:25:14,131   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-02-14T15:25:14,143   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-02-14T15:25:14,146   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-02-14T15:25:14,147   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/binposplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-02-14T15:25:14,149   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-02-14T15:25:14,151   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-02-14T15:25:14,154   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binposlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-02-14T15:25:14,156   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-02-14T15:25:14,157   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-02-14T15:25:14,159   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/utils.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-02-14T15:25:14,161   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-02-14T15:25:14,162   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-02-14T15:25:14,164   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-02-14T15:25:14,166   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-02-14T15:25:14,167   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-02-14T15:25:14,196   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-02-14T15:25:14,215   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-02-14T15:25:14,216   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-02-14T15:25:14,218   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdr_seek.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-02-14T15:25:14,220   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/trr_header.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-02-14T15:25:14,221   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-02-14T15:25:14,224   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-02-14T15:25:14,225   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-02-14T15:25:14,227   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-02-14T15:25:14,230   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xdrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-02-14T15:25:14,233   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-02-14T15:25:14,234   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-02-14T15:25:14,236   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-02-14T15:25:14,238   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-02-14T15:25:14,240   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-02-14T15:25:14,243   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-02-14T15:25:14,246   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-02-14T15:25:14,248   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-02-14T15:25:14,248   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-02-14T15:25:14,264   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-02-14T15:25:14,268   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-02-14T15:25:14,269   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/fastio.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-02-14T15:25:14,271   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-02-14T15:25:14,273   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/dcdplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-02-14T15:25:14,275   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/endianswap.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-02-14T15:25:14,278   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-02-14T15:25:14,281   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcdlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-02-14T15:25:14,284   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-02-14T15:25:14,285   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-02-14T15:25:14,289   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/netcdf.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-02-14T15:25:14,292   copying build/lib.linux-armv7l-cpython-39/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-14T15:25:14,296   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-14T15:25:14,297   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-14T15:25:14,300   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-14T15:25:14,302   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-14T15:25:14,305   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-14T15:25:14,307   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-14T15:25:14,310   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-14T15:25:14,313   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/modelling.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-14T15:25:14,315   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-14T15:25:14,318   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-14T15:25:14,320   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-02-14T15:25:14,321   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-02-14T15:25:14,323   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-02-14T15:25:14,325   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-14T15:25:14,328   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-14T15:25:14,330   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-14T15:25:14,334   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-14T15:25:14,337   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-14T15:25:14,341   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-02-14T15:25:14,343   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-02-14T15:25:14,375   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-02-14T15:25:14,378   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-02-14T15:25:14,380   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-02-14T15:25:14,383   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-02-14T15:25:14,387   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-02-14T15:25:14,388   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-02-14T15:25:14,399   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-14T15:25:14,439   copying build/lib.linux-armv7l-cpython-39/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-14T15:25:14,442   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-02-14T15:25:14,443   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-02-14T15:25:14,465   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-02-14T15:25:14,467   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-14T15:25:14,488   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-14T15:25:14,491   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-14T15:25:14,523   copying build/lib.linux-armv7l-cpython-39/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-14T15:25:14,526   copying build/lib.linux-armv7l-cpython-39/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-14T15:25:14,531   copying build/lib.linux-armv7l-cpython-39/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-14T15:25:14,532   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-14T15:25:14,621   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-14T15:25:14,624   copying build/lib.linux-armv7l-cpython-39/moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-14T15:25:14,639   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-14T15:25:14,668   copying build/lib.linux-armv7l-cpython-39/moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-14T15:25:14,681   copying build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-14T15:25:14,702   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-14T15:25:14,704   running install_egg_info
2024-02-14T15:25:14,710   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.8.21-py3.9.egg-info
2024-02-14T15:25:14,723   running install_scripts
2024-02-14T15:25:14,771   creating build/bdist.linux-armv7l/wheel/moleculekit-1.8.21.dist-info/WHEEL
2024-02-14T15:25:14,774   creating '/tmp/pip-wheel-6_wuic5n/.tmp-7dwn5wzc/moleculekit-1.8.21-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-02-14T15:25:14,777   adding 'moleculekit/__init__.py'
2024-02-14T15:25:14,779   adding 'moleculekit/_version.py'
2024-02-14T15:25:14,780   adding 'moleculekit/align.py'
2024-02-14T15:25:15,091   adding 'moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so'
2024-02-14T15:25:15,254   adding 'moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so'
2024-02-14T15:25:15,260   adding 'moleculekit/bondguesser.py'
2024-02-14T15:25:15,504   adding 'moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so'
2024-02-14T15:25:15,513   adding 'moleculekit/config.py'
2024-02-14T15:25:15,771   adding 'moleculekit/cython_utils.cpython-39-arm-linux-gnueabihf.so'
2024-02-14T15:25:15,944   adding 'moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so'
2024-02-14T15:25:15,950   adding 'moleculekit/dihedral.py'
2024-02-14T15:25:15,952   adding 'moleculekit/distance.py'
2024-02-14T15:25:16,272   adding 'moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so'
2024-02-14T15:25:16,284   adding 'moleculekit/home.py'
2024-02-14T15:25:16,285   adding 'moleculekit/logging.ini'
2024-02-14T15:25:16,299   adding 'moleculekit/molecule.py'
2024-02-14T15:25:16,526   adding 'moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so'
2024-02-14T15:25:16,535   adding 'moleculekit/opm.py'
2024-02-14T15:25:16,537   adding 'moleculekit/periodictable.py'
2024-02-14T15:25:16,539   adding 'moleculekit/pymolgraphics.py'
2024-02-14T15:25:16,540   adding 'moleculekit/rcsb.py'
2024-02-14T15:25:16,542   adding 'moleculekit/rdkitintegration.py'
2024-02-14T15:25:16,555   adding 'moleculekit/readers.py'
2024-02-14T15:25:17,160   adding 'moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so'
2024-02-14T15:25:17,472   adding 'moleculekit/trr.cpython-39-arm-linux-gnueabihf.so'
2024-02-14T15:25:17,485   adding 'moleculekit/util.py'
2024-02-14T15:25:17,486   adding 'moleculekit/version.py'
2024-02-14T15:25:17,488   adding 'moleculekit/viewer.py'
2024-02-14T15:25:17,489   adding 'moleculekit/vmd_wrapper'
2024-02-14T15:25:17,491   adding 'moleculekit/vmdgraphics.py'
2024-02-14T15:25:17,493   adding 'moleculekit/vmdviewer.py'
2024-02-14T15:25:17,747   adding 'moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so'
2024-02-14T15:25:17,761   adding 'moleculekit/writers.py'
2024-02-14T15:25:18,029   adding 'moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so'
2024-02-14T15:25:18,039   adding 'moleculekit/atomselect/__init__.py'
2024-02-14T15:25:18,041   adding 'moleculekit/atomselect/analyze.py'
2024-02-14T15:25:18,043   adding 'moleculekit/atomselect/atomselect.py'
2024-02-14T15:25:18,045   adding 'moleculekit/atomselect/languageparser.py'
2024-02-14T15:25:18,149   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2024-02-14T15:25:18,160   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2024-02-14T15:25:18,252   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2024-02-14T15:25:18,261   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2024-02-14T15:25:18,351   adding 'moleculekit/cython_utils/cython_utils.cpp'
2024-02-14T15:25:18,360   adding 'moleculekit/cython_utils/cython_utils.pyx'
2024-02-14T15:25:18,461   adding 'moleculekit/distance_utils/distance_utils.cpp'
2024-02-14T15:25:18,471   adding 'moleculekit/distance_utils/distance_utils.pyx'
2024-02-14T15:25:18,473   adding 'moleculekit/fileformats/__init__.py'
2024-02-14T15:25:18,478   adding 'moleculekit/fileformats/netcdf.py'
2024-02-14T15:25:18,480   adding 'moleculekit/fileformats/utils.py'
2024-02-14T15:25:18,542   adding 'moleculekit/fileformats/binpos/binpos.c'
2024-02-14T15:25:18,549   adding 'moleculekit/fileformats/binpos/binpos.pyx'
2024-02-14T15:25:18,550   adding 'moleculekit/fileformats/binpos/binposlib.pxd'
2024-02-14T15:25:18,552   adding 'moleculekit/fileformats/binpos/include/binposplugin.h'
2024-02-14T15:25:18,553   adding 'moleculekit/fileformats/binpos/include/largefiles.h'
2024-02-14T15:25:18,558   adding 'moleculekit/fileformats/binpos/include/molfile_plugin.h'
2024-02-14T15:25:18,561   adding 'moleculekit/fileformats/binpos/src/binposplugin.c'
2024-02-14T15:25:18,624   adding 'moleculekit/fileformats/dcd/dcd.c'
2024-02-14T15:25:18,632   adding 'moleculekit/fileformats/dcd/dcd.pyx'
2024-02-14T15:25:18,633   adding 'moleculekit/fileformats/dcd/dcdlib.pxd'
2024-02-14T15:25:18,635   adding 'moleculekit/fileformats/dcd/include/dcdplugin.h'
2024-02-14T15:25:18,637   adding 'moleculekit/fileformats/dcd/include/endianswap.h'
2024-02-14T15:25:18,639   adding 'moleculekit/fileformats/dcd/include/fastio.h'
2024-02-14T15:25:18,640   adding 'moleculekit/fileformats/dcd/include/largefiles.h'
2024-02-14T15:25:18,645   adding 'moleculekit/fileformats/dcd/include/molfile_plugin.h'
2024-02-14T15:25:18,650   adding 'moleculekit/fileformats/dcd/src/dcdplugin.c'
2024-02-14T15:25:18,746   adding 'moleculekit/fileformats/xtc/trr.c'
2024-02-14T15:25:18,757   adding 'moleculekit/fileformats/xtc/trr.pyx'
2024-02-14T15:25:18,759   adding 'moleculekit/fileformats/xtc/trrlib.pxd'
2024-02-14T15:25:18,760   adding 'moleculekit/fileformats/xtc/xdrlib.pxd'
2024-02-14T15:25:18,849   adding 'moleculekit/fileformats/xtc/xtc.cpp'
2024-02-14T15:25:18,858   adding 'moleculekit/fileformats/xtc/xtc.pyx'
2024-02-14T15:25:18,859   adding 'moleculekit/fileformats/xtc/xtclib.pxd'
2024-02-14T15:25:18,861   adding 'moleculekit/fileformats/xtc/include/trr_header.h'
2024-02-14T15:25:18,862   adding 'moleculekit/fileformats/xtc/include/xdr_seek.h'
2024-02-14T15:25:18,865   adding 'moleculekit/fileformats/xtc/include/xdrfile.h'
2024-02-14T15:25:18,866   adding 'moleculekit/fileformats/xtc/include/xdrfile_trr.h'
2024-02-14T15:25:18,867   adding 'moleculekit/fileformats/xtc/include/xdrfile_xtc.h'
2024-02-14T15:25:18,869   adding 'moleculekit/fileformats/xtc/include/xtc.h'
2024-02-14T15:25:18,870   adding 'moleculekit/fileformats/xtc/src/xdr_seek.c'
2024-02-14T15:25:18,877   adding 'moleculekit/fileformats/xtc/src/xdrfile.cpp'
2024-02-14T15:25:18,879   adding 'moleculekit/fileformats/xtc/src/xdrfile_trr.c'
2024-02-14T15:25:18,881   adding 'moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp'
2024-02-14T15:25:18,883   adding 'moleculekit/fileformats/xtc/src/xtc.cpp'
2024-02-14T15:25:18,885   adding 'moleculekit/interactions/__init__.py'
2024-02-14T15:25:19,170   adding 'moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so'
2024-02-14T15:25:19,441   adding 'moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so'
2024-02-14T15:25:19,452   adding 'moleculekit/interactions/interactions.py'
2024-02-14T15:25:19,735   adding 'moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so'
2024-02-14T15:25:20,023   adding 'moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so'
2024-02-14T15:25:20,124   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2024-02-14T15:25:20,133   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2024-02-14T15:25:20,225   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2024-02-14T15:25:20,234   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2024-02-14T15:25:20,326   adding 'moleculekit/interactions/pipi/pipi.cpp'
2024-02-14T15:25:20,335   adding 'moleculekit/interactions/pipi/pipi.pyx'
2024-02-14T15:25:20,427   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2024-02-14T15:25:20,436   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2024-02-14T15:25:20,524   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2024-02-14T15:25:20,532   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2024-02-14T15:25:20,533   adding 'moleculekit/pdbx/__init__.py'
2024-02-14T15:25:20,537   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2024-02-14T15:25:20,540   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2024-02-14T15:25:20,542   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2024-02-14T15:25:20,544   adding 'moleculekit/pdbx/reader/__init__.py'
2024-02-14T15:25:20,546   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2024-02-14T15:25:20,547   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2024-02-14T15:25:20,549   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2024-02-14T15:25:20,550   adding 'moleculekit/pdbx/tests/__init__.py'
2024-02-14T15:25:20,552   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2024-02-14T15:25:20,553   adding 'moleculekit/pdbx/writer/__init__.py'
2024-02-14T15:25:20,554   adding 'moleculekit/ply/__init__.py'
2024-02-14T15:25:20,559   adding 'moleculekit/ply/lex.py'
2024-02-14T15:25:20,570   adding 'moleculekit/ply/yacc.py'
2024-02-14T15:25:20,573   adding 'moleculekit/projections/__init__.py'
2024-02-14T15:25:20,575   adding 'moleculekit/projections/metriccoordinate.py'
2024-02-14T15:25:20,578   adding 'moleculekit/projections/metricdihedral.py'
2024-02-14T15:25:20,582   adding 'moleculekit/projections/metricdistance.py'
2024-02-14T15:25:20,584   adding 'moleculekit/projections/metricfluctuation.py'
2024-02-14T15:25:20,586   adding 'moleculekit/projections/metricgyration.py'
2024-02-14T15:25:20,589   adding 'moleculekit/projections/metricplumed2.py'
2024-02-14T15:25:20,591   adding 'moleculekit/projections/metricrmsd.py'
2024-02-14T15:25:20,593   adding 'moleculekit/projections/metricsasa.py'
2024-02-14T15:25:20,595   adding 'moleculekit/projections/metricsecondarystructure.py'
2024-02-14T15:25:20,597   adding 'moleculekit/projections/metricshell.py'
2024-02-14T15:25:20,599   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2024-02-14T15:25:20,600   adding 'moleculekit/projections/metrictmscore.py'
2024-02-14T15:25:20,601   adding 'moleculekit/projections/projection.py'
2024-02-14T15:25:20,603   adding 'moleculekit/projections/util.py'
2024-02-14T15:25:20,605   adding 'moleculekit/share/ALA.cif'
2024-02-14T15:25:20,606   adding 'moleculekit/share/backbone.cif'
2024-02-14T15:25:21,910   adding 'moleculekit/share/opm_sequences.json'
2024-02-14T15:25:21,995   adding 'moleculekit/share/atomselect/atomselect.json'
2024-02-14T15:25:21,999   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2024-02-14T15:25:22,001   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2024-02-14T15:25:22,002   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2024-02-14T15:25:22,003   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2024-02-14T15:25:22,004   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2024-02-14T15:25:22,005   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2024-02-14T15:25:22,007   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2024-02-14T15:25:22,008   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2024-02-14T15:25:22,009   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2024-02-14T15:25:22,011   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2024-02-14T15:25:22,012   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2024-02-14T15:25:22,013   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2024-02-14T15:25:22,014   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2024-02-14T15:25:22,015   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2024-02-14T15:25:22,017   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2024-02-14T15:25:22,018   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2024-02-14T15:25:22,019   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2024-02-14T15:25:22,020   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2024-02-14T15:25:22,022   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2024-02-14T15:25:22,023   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2024-02-14T15:25:22,024   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2024-02-14T15:25:22,025   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2024-02-14T15:25:22,027   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2024-02-14T15:25:22,028   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2024-02-14T15:25:22,029   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2024-02-14T15:25:22,030   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2024-02-14T15:25:22,032   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2024-02-14T15:25:22,033   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2024-02-14T15:25:22,034   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2024-02-14T15:25:22,035   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2024-02-14T15:25:22,036   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2024-02-14T15:25:22,037   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2024-02-14T15:25:22,039   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2024-02-14T15:25:22,040   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2024-02-14T15:25:22,041   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2024-02-14T15:25:22,042   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2024-02-14T15:25:22,044   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2024-02-14T15:25:22,045   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2024-02-14T15:25:22,046   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2024-02-14T15:25:22,047   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2024-02-14T15:25:22,049   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2024-02-14T15:25:22,050   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2024-02-14T15:25:22,051   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2024-02-14T15:25:22,052   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2024-02-14T15:25:22,054   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2024-02-14T15:25:22,055   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2024-02-14T15:25:22,056   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2024-02-14T15:25:22,057   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2024-02-14T15:25:22,058   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2024-02-14T15:25:22,060   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2024-02-14T15:25:22,061   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2024-02-14T15:25:22,062   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2024-02-14T15:25:22,063   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2024-02-14T15:25:22,064   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2024-02-14T15:25:22,066   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2024-02-14T15:25:22,067   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2024-02-14T15:25:22,068   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2024-02-14T15:25:22,069   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2024-02-14T15:25:22,070   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2024-02-14T15:25:22,071   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2024-02-14T15:25:22,073   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2024-02-14T15:25:22,074   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2024-02-14T15:25:22,075   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2024-02-14T15:25:22,076   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2024-02-14T15:25:22,078   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2024-02-14T15:25:22,079   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2024-02-14T15:25:22,080   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2024-02-14T15:25:22,081   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2024-02-14T15:25:22,083   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2024-02-14T15:25:22,084   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2024-02-14T15:25:22,085   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2024-02-14T15:25:22,086   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2024-02-14T15:25:22,087   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2024-02-14T15:25:22,088   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2024-02-14T15:25:22,090   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2024-02-14T15:25:22,091   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2024-02-14T15:25:22,092   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2024-02-14T15:25:22,093   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2024-02-14T15:25:22,094   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2024-02-14T15:25:22,096   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2024-02-14T15:25:22,097   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2024-02-14T15:25:22,098   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2024-02-14T15:25:22,099   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2024-02-14T15:25:22,101   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2024-02-14T15:25:22,102   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2024-02-14T15:25:22,103   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2024-02-14T15:25:22,105   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2024-02-14T15:25:22,106   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2024-02-14T15:25:22,107   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2024-02-14T15:25:22,108   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2024-02-14T15:25:22,109   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2024-02-14T15:25:22,111   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2024-02-14T15:25:22,112   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2024-02-14T15:25:22,113   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2024-02-14T15:25:22,114   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2024-02-14T15:25:22,115   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2024-02-14T15:25:22,117   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2024-02-14T15:25:22,118   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2024-02-14T15:25:22,119   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2024-02-14T15:25:22,120   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2024-02-14T15:25:22,122   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2024-02-14T15:25:22,123   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2024-02-14T15:25:22,124   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2024-02-14T15:25:22,125   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2024-02-14T15:25:22,127   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2024-02-14T15:25:22,128   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2024-02-14T15:25:22,129   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2024-02-14T15:25:22,130   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2024-02-14T15:25:22,131   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2024-02-14T15:25:22,133   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2024-02-14T15:25:22,134   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2024-02-14T15:25:22,135   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2024-02-14T15:25:22,136   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2024-02-14T15:25:22,137   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2024-02-14T15:25:22,139   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2024-02-14T15:25:22,140   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2024-02-14T15:25:22,141   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2024-02-14T15:25:22,142   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2024-02-14T15:25:22,144   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2024-02-14T15:25:22,145   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2024-02-14T15:25:22,146   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2024-02-14T15:25:22,147   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2024-02-14T15:25:22,148   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2024-02-14T15:25:22,150   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2024-02-14T15:25:22,151   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2024-02-14T15:25:22,152   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2024-02-14T15:25:22,153   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2024-02-14T15:25:22,154   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2024-02-14T15:25:22,156   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2024-02-14T15:25:22,157   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2024-02-14T15:25:22,158   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2024-02-14T15:25:22,159   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2024-02-14T15:25:22,161   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2024-02-14T15:25:22,162   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2024-02-14T15:25:22,163   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2024-02-14T15:25:22,164   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2024-02-14T15:25:22,166   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2024-02-14T15:25:22,167   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2024-02-14T15:25:22,168   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2024-02-14T15:25:22,169   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2024-02-14T15:25:22,170   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2024-02-14T15:25:22,172   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2024-02-14T15:25:22,173   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2024-02-14T15:25:22,174   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2024-02-14T15:25:22,175   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2024-02-14T15:25:22,176   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2024-02-14T15:25:22,178   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2024-02-14T15:25:22,179   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2024-02-14T15:25:22,180   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2024-02-14T15:25:22,181   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2024-02-14T15:25:22,183   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2024-02-14T15:25:22,184   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2024-02-14T15:25:22,185   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2024-02-14T15:25:22,186   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2024-02-14T15:25:22,188   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2024-02-14T15:25:22,189   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2024-02-14T15:25:22,190   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2024-02-14T15:25:22,191   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2024-02-14T15:25:22,192   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2024-02-14T15:25:22,194   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2024-02-14T15:25:22,195   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2024-02-14T15:25:22,196   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2024-02-14T15:25:22,197   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2024-02-14T15:25:22,198   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2024-02-14T15:25:22,200   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2024-02-14T15:25:22,201   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2024-02-14T15:25:22,202   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2024-02-14T15:25:22,203   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2024-02-14T15:25:22,205   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2024-02-14T15:25:22,206   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2024-02-14T15:25:22,207   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2024-02-14T15:25:22,208   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2024-02-14T15:25:22,209   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2024-02-14T15:25:22,211   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2024-02-14T15:25:22,212   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2024-02-14T15:25:22,214   adding 'moleculekit/smallmol/__init__.py'
2024-02-14T15:25:22,219   adding 'moleculekit/smallmol/smallmol.py'
2024-02-14T15:25:22,222   adding 'moleculekit/smallmol/smallmollib.py'
2024-02-14T15:25:22,224   adding 'moleculekit/smallmol/test_smallmol.py'
2024-02-14T15:25:22,225   adding 'moleculekit/smallmol/test_smallmollib.py'
2024-02-14T15:25:22,227   adding 'moleculekit/smallmol/util.py'
2024-02-14T15:25:22,229   adding 'moleculekit/smallmol/tools/__init__.py'
2024-02-14T15:25:22,231   adding 'moleculekit/smallmol/tools/clustering.py'
2024-02-14T15:25:22,232   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2024-02-14T15:25:22,234   adding 'moleculekit/smallmol/tools/test_tools.py'
2024-02-14T15:25:22,324   adding 'moleculekit/tmalign/tmalign_util.cpp'
2024-02-14T15:25:22,333   adding 'moleculekit/tmalign/tmalign_util.pyx'
2024-02-14T15:25:22,335   adding 'moleculekit/tmalign/tmalignlib.pxd'
2024-02-14T15:25:22,336   adding 'moleculekit/tmalign/include/TMAlign.h'
2024-02-14T15:25:22,354   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2024-02-14T15:25:22,357   adding 'moleculekit/tools/__init__.py'
2024-02-14T15:25:22,359   adding 'moleculekit/tools/atomtyper.py'
2024-02-14T15:25:22,361   adding 'moleculekit/tools/autosegment.py'
2024-02-14T15:25:22,363   adding 'moleculekit/tools/crystalpacking.py'
2024-02-14T15:25:22,367   adding 'moleculekit/tools/detect.py'
2024-02-14T15:25:22,369   adding 'moleculekit/tools/docking.py'
2024-02-14T15:25:22,371   adding 'moleculekit/tools/graphalignment.py'
2024-02-14T15:25:22,372   adding 'moleculekit/tools/hhblitsprofile.py'
2024-02-14T15:25:22,374   adding 'moleculekit/tools/modelling.py'
2024-02-14T15:25:22,375   adding 'moleculekit/tools/moleculechecks.py'
2024-02-14T15:25:22,381   adding 'moleculekit/tools/preparation.py'
2024-02-14T15:25:22,384   adding 'moleculekit/tools/preparation_customres.py'
2024-02-14T15:25:22,386   adding 'moleculekit/tools/sequencestructuralalignment.py'
2024-02-14T15:25:22,389   adding 'moleculekit/tools/voxeldescriptors.py'
2024-02-14T15:25:22,391   adding 'moleculekit/tools/obabel_tools/__init__.py'
2024-02-14T15:25:22,392   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2024-02-14T15:25:22,485   adding 'moleculekit/wrapping/wrapping.cpp'
2024-02-14T15:25:22,494   adding 'moleculekit/wrapping/wrapping.pyx'
2024-02-14T15:25:22,496   adding 'moleculekit-1.8.21.dist-info/LICENSE'
2024-02-14T15:25:22,497   adding 'moleculekit-1.8.21.dist-info/METADATA'
2024-02-14T15:25:22,498   adding 'moleculekit-1.8.21.dist-info/WHEEL'
2024-02-14T15:25:22,499   adding 'moleculekit-1.8.21.dist-info/top_level.txt'
2024-02-14T15:25:22,504   adding 'moleculekit-1.8.21.dist-info/RECORD'
2024-02-14T15:25:22,687   removing build/bdist.linux-armv7l/wheel
2024-02-14T15:25:22,974   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2024-02-14T15:25:23,297   Created wheel for moleculekit: filename=moleculekit-1.8.21-cp39-cp39-linux_armv7l.whl size=14879023 sha256=65e25cf453c606d795f3baffce7e164e18d499295c8cb10ffd1a76bda8c01179
2024-02-14T15:25:23,299   Stored in directory: /tmp/pip-ephem-wheel-cache-2u818kgq/wheels/63/b0/36/343943f418754175b822aae7e92330d544af23fd21b1422cf6
2024-02-14T15:25:23,327 Successfully built moleculekit
2024-02-14T15:25:23,701 Removed build tracker: '/tmp/pip-build-tracker-y751woyo'