2024-02-15T23:35:37,719 Created temporary directory: /tmp/pip-build-tracker-tys21fnr 2024-02-15T23:35:37,723 Initialized build tracking at /tmp/pip-build-tracker-tys21fnr 2024-02-15T23:35:37,724 Created build tracker: /tmp/pip-build-tracker-tys21fnr 2024-02-15T23:35:37,724 Entered build tracker: /tmp/pip-build-tracker-tys21fnr 2024-02-15T23:35:37,725 Created temporary directory: /tmp/pip-wheel-i3gcm97f 2024-02-15T23:35:37,736 Created temporary directory: /tmp/pip-ephem-wheel-cache-9ajw2g94 2024-02-15T23:35:37,791 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-02-15T23:35:37,805 2 location(s) to search for versions of cryodrgn: 2024-02-15T23:35:37,805 * https://pypi.org/simple/cryodrgn/ 2024-02-15T23:35:37,805 * https://www.piwheels.org/simple/cryodrgn/ 2024-02-15T23:35:37,806 Fetching project page and analyzing links: https://pypi.org/simple/cryodrgn/ 2024-02-15T23:35:37,807 Getting page https://pypi.org/simple/cryodrgn/ 2024-02-15T23:35:37,811 Found index url https://pypi.org/simple/ 2024-02-15T23:35:37,923 Fetched page https://pypi.org/simple/cryodrgn/ as application/vnd.pypi.simple.v1+json 2024-02-15T23:35:37,934 Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/50/91/1306b78002812cfa9932e2691070f765b75d4385e4bbf559d211a4e71025/cryodrgn-1.1.1-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-02-15T23:35:37,935 Found link https://files.pythonhosted.org/packages/24/08/8de601e5f4fe8a5177c4191c0be1848d2952dad0ef149820aadadbee2e08/cryodrgn-1.1.1.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 1.1.1 2024-02-15T23:35:37,936 Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/e9/78/bdf1fd8d9394a0025206a4d1478b21170d7392e35132522c5ef87855fe73/cryodrgn-2.1.0b5-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-02-15T23:35:37,938 Found link https://files.pythonhosted.org/packages/68/26/6669e39abe77e36bd49d1f21f68ed04961bdd0a76f909b497c96ce78b60b/cryodrgn-2.1.0b5.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 2.1.0b5 2024-02-15T23:35:37,938 Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/7d/d8/dae369c30a1b908f5713f7b46f4948aed0253f9e7e124c98e6c7b15d7e57/cryodrgn-2.2.0b0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-02-15T23:35:37,940 Found link https://files.pythonhosted.org/packages/6f/19/b950e5eb7a6d3c8d122bec56e59c447d3585a660a7605112a5346816014e/cryodrgn-2.2.0b0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 2.2.0b0 2024-02-15T23:35:37,940 Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/6d/79/97a3f0118ef0c156bf5eaf931f4a5855a5c5d27dedd04aaa0bcf57fe1f7c/cryodrgn-2.2.0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-02-15T23:35:37,942 Found link https://files.pythonhosted.org/packages/03/50/3259e1a4efc92c945d1ae88fd5765a0ba4db77f0a742fc0e0a206cd781ac/cryodrgn-2.2.0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 2.2.0 2024-02-15T23:35:37,942 Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/03/29/f9750c89414937c8700d9d5aa167d9ed1e3157ebb6a9971effb4bcbe8bec/cryodrgn-2.3.0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-02-15T23:35:37,943 Found link https://files.pythonhosted.org/packages/d2/69/c5d8c6da2da86575a985307f67f214a0f56a7f79d73492a5184170ea7036/cryodrgn-2.3.0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 2.3.0 2024-02-15T23:35:37,944 Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/08/8d/d0ff2954b5825e3b771a943b40423d57195aec5c30d4b770250ac822c7fe/cryodrgn-3.0.0b0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-02-15T23:35:37,945 Found link https://files.pythonhosted.org/packages/74/92/6ca0ee245ed52438a0f471cfb29de766b9822010f760da08875be946e827/cryodrgn-3.0.0b0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 3.0.0b0 2024-02-15T23:35:37,946 Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/ec/e4/6ed8adf3e7b526a69e850b7e5d1b7f6fceede2b3683b35c81944321149a7/cryodrgn-3.0.1b0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-02-15T23:35:37,948 Found link https://files.pythonhosted.org/packages/9d/05/4215fddb0e1cce3525690435efa36cef19ad50c1808b1d48771ea3b7ff37/cryodrgn-3.0.1b0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 3.0.1b0 2024-02-15T23:35:37,948 Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/f4/5b/054660b4368ce3eaf45f8301c941cf2e5ee0ba92b1f76dd1503c64d9d156/cryodrgn-3.1.0b0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-02-15T23:35:37,949 Found link https://files.pythonhosted.org/packages/fa/81/02d79980623ec3e72fe0a381ab2953b96b71bcd81937ff54943dd2c85054/cryodrgn-3.1.0b0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 3.1.0b0 2024-02-15T23:35:37,950 Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/7b/90/4d4442c4ef959de675c6815995a483c1da8c840ce73da4a2208463548db7/cryodrgn-3.2.0a0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7) 2024-02-15T23:35:37,952 Found link https://files.pythonhosted.org/packages/f2/8b/00d75ab0c8fb63f1bf59c2322d38b3e63c79882cfc9071792af0800b9c8c/cryodrgn-3.2.0a0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7), version: 3.2.0a0 2024-02-15T23:35:37,953 Fetching project page and analyzing links: https://www.piwheels.org/simple/cryodrgn/ 2024-02-15T23:35:37,953 Getting page https://www.piwheels.org/simple/cryodrgn/ 2024-02-15T23:35:37,956 Found index url https://www.piwheels.org/simple/ 2024-02-15T23:35:38,084 Fetched page https://www.piwheels.org/simple/cryodrgn/ as text/html 2024-02-15T23:35:38,092 Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-3.1.0b0-py3-none-any.whl#sha256=929d0ff6af693745b3d438a6e7462cc2845e60d49457cd383b6b17b01778017c (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-02-15T23:35:38,092 Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-3.0.1b0-py3-none-any.whl#sha256=c5aa67408ca576f776a9b8a331b966eb87343cb2d3713e29768705555e85f930 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-02-15T23:35:38,093 Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-3.0.0b0-py3-none-any.whl#sha256=498fba8644092d42d124e88b81d7209e358d25ea05720b664bd44c454eb221a2 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-02-15T23:35:38,093 Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-2.3.0-py3-none-any.whl#sha256=d3f519ed4819eac7456ccee2c974e41070b80d0e895797cf940ea8b8ca729631 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-02-15T23:35:38,094 Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-2.2.0-py3-none-any.whl#sha256=6d705695a229d236db29c0b847f18e336bc53358ef3bc125cb158bd743f53bc9 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-02-15T23:35:38,094 Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-2.2.0b0-py3-none-any.whl#sha256=ded8ccf2e343961488fc50ee73479e8c5a9bc61dd79a83f509f96e86c01e9306 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-02-15T23:35:38,095 Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-2.1.0b5-py3-none-any.whl#sha256=f43221397e48ac64c02c3009e927ea1212a8ad59ed1e20421a65287c9e853652 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-02-15T23:35:38,095 Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-1.1.1-py3-none-any.whl#sha256=b3cc3928fe1cc0f347265449cd329a61f3b7eadb9f833c26748b681c220cb4ad (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-02-15T23:35:38,096 Skipping link: not a file: https://www.piwheels.org/simple/cryodrgn/ 2024-02-15T23:35:38,097 Skipping link: not a file: https://pypi.org/simple/cryodrgn/ 2024-02-15T23:35:38,133 Given no hashes to check 1 links for project 'cryodrgn': discarding no candidates 2024-02-15T23:35:38,164 Collecting cryodrgn==3.2.0a0 2024-02-15T23:35:38,168 Created temporary directory: /tmp/pip-unpack-ieqpfrsa 2024-02-15T23:35:38,362 Downloading cryodrgn-3.2.0a0.tar.gz (35.7 MB) 2024-02-15T23:35:53,692 Added cryodrgn==3.2.0a0 from https://files.pythonhosted.org/packages/f2/8b/00d75ab0c8fb63f1bf59c2322d38b3e63c79882cfc9071792af0800b9c8c/cryodrgn-3.2.0a0.tar.gz to build tracker '/tmp/pip-build-tracker-tys21fnr' 2024-02-15T23:35:53,707 Created temporary directory: /tmp/pip-build-env-tczjzlpf 2024-02-15T23:35:53,728 Installing build dependencies: started 2024-02-15T23:35:53,730 Running command pip subprocess to install build dependencies 2024-02-15T23:35:56,664 Using pip 23.3 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2024-02-15T23:35:57,932 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-02-15T23:35:59,701 Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/b8/49/b3b29c52b09075fb77f69309763a563b4054d5808a3f3b95df3a62ef3d3f/setuptools-68.1.0-py3-none-any.whl (from https://pypi.org/simple/setuptools/) (requires-python:>=3.8) 2024-02-15T23:35:59,704 Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/83/b0/18310b45f6eec3757c0554dbc1e03f2f7685c8a87831aea6adc1276faacc/setuptools-68.1.0.tar.gz (from https://pypi.org/simple/setuptools/) (requires-python:>=3.8) 2024-02-15T23:35:59,707 Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/4f/ab/0bcfebdfc3bfa8554b2b2c97a555569c4c1ebc74ea288741ea8326c51906/setuptools-68.1.2-py3-none-any.whl (from https://pypi.org/simple/setuptools/) (requires-python:>=3.8) 2024-02-15T23:35:59,710 Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/19/20/d8dd9d8becaf3e2d6fdc17cc41870d5ada5ceda518996cf5968c2ca71bd8/setuptools-68.1.2.tar.gz (from https://pypi.org/simple/setuptools/) (requires-python:>=3.8) 2024-02-15T23:35:59,713 Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/82/3b/0715493246eb08e93506f4da0efe1d05a3c9d9ac3b76e97cc362890e6adf/setuptools-68.2.0-py3-none-any.whl (from https://pypi.org/simple/setuptools/) (requires-python:>=3.8) 2024-02-15T23:35:59,716 Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/ac/e0/4ccbb616e5f30d3595fa44ccc66ba5ac38e68885bcd888916d39f8ba480a/setuptools-68.2.0.tar.gz (from https://pypi.org/simple/setuptools/) (requires-python:>=3.8) 2024-02-15T23:35:59,719 Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/95/79/6b47c6a872b40743a480687dc0c79ffb4202710789f3e4d54a84fff8b550/setuptools-68.2.1-py3-none-any.whl (from 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https://files.pythonhosted.org/packages/0f/93/daae527a7ad3ea3a4f7d84d05fd74b7cc637360a7e7b4df1df9a5046be17/setuptools-69.0.0-py3-none-any.whl (from https://pypi.org/simple/setuptools/) (requires-python:>=3.8) 2024-02-15T23:35:59,735 Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/91/43/4121cf96ed3a2d68d862663552d8044e1d987d716b6a065ab53cd4d4640f/setuptools-69.0.0.tar.gz (from https://pypi.org/simple/setuptools/) (requires-python:>=3.8) 2024-02-15T23:35:59,738 Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/f9/59/701df637517d6af0434cbb580bfc35a9c536aa7f47e0c2e222f1ef83547c/setuptools-69.0.1-py3-none-any.whl (from https://pypi.org/simple/setuptools/) (requires-python:>=3.8) 2024-02-15T23:35:59,741 Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/fb/d0/d5744a7190a984ab728c7d2bd7e39bae2ff523538b233246fd34e2148566/setuptools-69.0.1.tar.gz (from https://pypi.org/simple/setuptools/) (requires-python:>=3.8) 2024-02-15T23:35:59,744 Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/bb/e1/ed2dd0850446b8697ad28d118df885ad04140c64ace06c4bd559f7c8a94f/setuptools-69.0.2-py3-none-any.whl (from https://pypi.org/simple/setuptools/) (requires-python:>=3.8) 2024-02-15T23:35:59,747 Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/4b/d9/d0cf66484b7e28a9c42db7e3929caed46f8b80478cd8c9bd38b7be059150/setuptools-69.0.2.tar.gz (from https://pypi.org/simple/setuptools/) (requires-python:>=3.8) 2024-02-15T23:35:59,750 Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/55/3a/5121b58b578a598b269537e09a316ad2a94fdd561a2c6eb75cd68578cc6b/setuptools-69.0.3-py3-none-any.whl (from https://pypi.org/simple/setuptools/) (requires-python:>=3.8) 2024-02-15T23:35:59,753 Link requires a different Python (3.7.3 not in: 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https://www.piwheels.org/simple/setuptools/setuptools-69.0.1-py3-none-any.whl#sha256=9c4d043933771b03b0e86846a984b24281a40689d433f11691455b8bce7be14a (from https://www.piwheels.org/simple/setuptools/) (requires-python:>=3.8) 2024-02-15T23:36:00,311 Link requires a different Python (3.7.3 not in: '>=3.8'): https://www.piwheels.org/simple/setuptools/setuptools-69.0.0-py3-none-any.whl#sha256=7a44b57685847980bb37b08c098242577e0acb1a941ae1e01b6b42db9c9bc24b (from https://www.piwheels.org/simple/setuptools/) (requires-python:>=3.8) 2024-02-15T23:36:00,314 Link requires a different Python (3.7.3 not in: '>=3.8'): https://www.piwheels.org/simple/setuptools/setuptools-68.2.2-py3-none-any.whl#sha256=f0df733ea47683814b07dbe33306d759b45214648a1b5f03bdf033f43f653193 (from https://www.piwheels.org/simple/setuptools/) (requires-python:>=3.8) 2024-02-15T23:36:00,317 Link requires a different Python (3.7.3 not in: '>=3.8'): 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https://www.piwheels.org/simple/importlib-metadata/importlib_metadata-6.9.0-py3-none-any.whl#sha256=f32ad35a883eae724e7f2aec6b7c3f177cb3974611ee611bd88e1ccdc16dd21c (from https://www.piwheels.org/simple/importlib-metadata/) (requires-python:>=3.8) 2024-02-15T23:36:04,774 Link requires a different Python (3.7.3 not in: '>=3.8'): https://www.piwheels.org/simple/importlib-metadata/importlib_metadata-6.8.0-py3-none-any.whl#sha256=eee927b02daa5ef8a9da352c7edb8d87e3b0fb0ac03c36ec3b0c16a735819c74 (from https://www.piwheels.org/simple/importlib-metadata/) (requires-python:>=3.8) 2024-02-15T23:36:05,130 Collecting importlib-metadata (from setuptools_scm>=6.2) 2024-02-15T23:36:05,162 Using cached https://www.piwheels.org/simple/importlib-metadata/importlib_metadata-6.7.0-py3-none-any.whl (22 kB) 2024-02-15T23:36:05,552 Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/ad/be/a6c11f5e0c042fb97e6b567730f55c56b2fe4089304ae66207a54fa49d7e/zipp-3.16.0-py3-none-any.whl (from https://pypi.org/simple/zipp/) (requires-python:>=3.8) 2024-02-15T23:36:05,555 Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/52/9a/d93b483b9a744e7f71b311ee9bb5a228f6846219ceb5d6dbcb3eddcd1932/zipp-3.16.0.tar.gz (from https://pypi.org/simple/zipp/) (requires-python:>=3.8) 2024-02-15T23:36:05,558 Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/a1/3b/385e3b43200af0b9a13d03c234efbd9d40c6d73ab63fde1c097a2daacdea/zipp-3.16.1-py3-none-any.whl (from https://pypi.org/simple/zipp/) (requires-python:>=3.8) 2024-02-15T23:36:05,561 Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/ef/76/5a9e1553f00ee55a6de6b3c176aa4c859c7f64b9bbdc48804df174dee890/zipp-3.16.1.tar.gz (from https://pypi.org/simple/zipp/) (requires-python:>=3.8) 2024-02-15T23:36:05,564 Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/8c/08/d3006317aefe25ea79d3b76c9650afabaf6d63d1c8443b236e7405447503/zipp-3.16.2-py3-none-any.whl (from https://pypi.org/simple/zipp/) (requires-python:>=3.8) 2024-02-15T23:36:05,567 Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/e2/45/f3b987ad5bf9e08095c1ebe6352238be36f25dd106fde424a160061dce6d/zipp-3.16.2.tar.gz (from https://pypi.org/simple/zipp/) (requires-python:>=3.8) 2024-02-15T23:36:05,570 Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/d9/66/48866fc6b158c81cc2bfecc04c480f105c6040e8b077bc54c634b4a67926/zipp-3.17.0-py3-none-any.whl (from https://pypi.org/simple/zipp/) (requires-python:>=3.8) 2024-02-15T23:36:05,573 Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/58/03/dd5ccf4e06dec9537ecba8fcc67bbd4ea48a2791773e469e73f94c3ba9a6/zipp-3.17.0.tar.gz (from https://pypi.org/simple/zipp/) (requires-python:>=3.8) 2024-02-15T23:36:05,648 Link requires a different Python (3.7.3 not in: '>=3.8'): https://www.piwheels.org/simple/zipp/zipp-3.17.0-py3-none-any.whl#sha256=03618401c9ad1f41bd0e471f319f1ee79147a2e38f6bc4566b4de609ab87fe11 (from https://www.piwheels.org/simple/zipp/) (requires-python:>=3.8) 2024-02-15T23:36:05,651 Link requires a different Python (3.7.3 not in: '>=3.8'): https://www.piwheels.org/simple/zipp/zipp-3.16.2-py3-none-any.whl#sha256=ffebb2bccce49efecaa7b6d4d273d64e047c4d0ea72b6f04c05a11a9f49a753d (from https://www.piwheels.org/simple/zipp/) (requires-python:>=3.8) 2024-02-15T23:36:05,654 Link requires a different Python (3.7.3 not in: '>=3.8'): https://www.piwheels.org/simple/zipp/zipp-3.16.1-py3-none-any.whl#sha256=8ba47289cfe5ead30d0cda58334ebb39b0e27609aaa680c24d2323927fd8696e (from https://www.piwheels.org/simple/zipp/) (requires-python:>=3.8) 2024-02-15T23:36:05,657 Link requires a different Python (3.7.3 not in: '>=3.8'): https://www.piwheels.org/simple/zipp/zipp-3.16.0-py3-none-any.whl#sha256=1338e8df1aff24947954617867855699925e8e9e87e75e0853a68fe6cc2b646b (from https://www.piwheels.org/simple/zipp/) (requires-python:>=3.8) 2024-02-15T23:36:05,820 Collecting zipp>=0.5 (from importlib-metadata->setuptools_scm>=6.2) 2024-02-15T23:36:05,853 Using cached https://www.piwheels.org/simple/zipp/zipp-3.15.0-py3-none-any.whl (6.8 kB) 2024-02-15T23:36:11,167 Installing collected packages: zipp, typing-extensions, tomli, setuptools, packaging, importlib-metadata, setuptools_scm 2024-02-15T23:36:16,895 Successfully installed importlib-metadata-6.7.0 packaging-23.2 setuptools-68.0.0 setuptools_scm-7.1.0 tomli-2.0.1 typing-extensions-4.7.1 zipp-3.15.0 2024-02-15T23:36:17,346 WARNING: There was an error checking the latest version of pip. 2024-02-15T23:36:17,877 Installing build dependencies: finished with status 'done' 2024-02-15T23:36:17,890 Getting requirements to build wheel: started 2024-02-15T23:36:17,892 Running command Getting requirements to build wheel 2024-02-15T23:36:20,273 running egg_info 2024-02-15T23:36:20,288 writing cryodrgn.egg-info/PKG-INFO 2024-02-15T23:36:20,293 writing dependency_links to cryodrgn.egg-info/dependency_links.txt 2024-02-15T23:36:20,298 writing entry points to cryodrgn.egg-info/entry_points.txt 2024-02-15T23:36:20,301 writing requirements to cryodrgn.egg-info/requires.txt 2024-02-15T23:36:20,303 writing top-level names to cryodrgn.egg-info/top_level.txt 2024-02-15T23:36:20,417 /tmp/pip-build-env-tczjzlpf/overlay/lib/python3.7/site-packages/setuptools/config/pyprojecttoml.py:66: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. 2024-02-15T23:36:20,418 config = read_configuration(filepath, True, ignore_option_errors, dist) 2024-02-15T23:36:20,418 listing git files failed - pretending there aren't any 2024-02-15T23:36:20,437 reading manifest file 'cryodrgn.egg-info/SOURCES.txt' 2024-02-15T23:36:20,459 reading manifest template 'MANIFEST.in' 2024-02-15T23:36:20,464 adding license file 'LICENSE.txt' 2024-02-15T23:36:20,497 writing manifest file 'cryodrgn.egg-info/SOURCES.txt' 2024-02-15T23:36:20,704 Getting requirements to build wheel: finished with status 'done' 2024-02-15T23:36:20,744 Installing backend dependencies: started 2024-02-15T23:36:20,746 Running command pip subprocess to install backend dependencies 2024-02-15T23:36:23,602 Using pip 23.3 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2024-02-15T23:36:25,053 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-02-15T23:36:25,817 Collecting wheel 2024-02-15T23:36:25,848 Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB) 2024-02-15T23:36:30,082 Installing collected packages: wheel 2024-02-15T23:36:30,531 Creating /tmp/pip-build-env-tczjzlpf/normal/bin 2024-02-15T23:36:30,535 changing mode of /tmp/pip-build-env-tczjzlpf/normal/bin/wheel to 755 2024-02-15T23:36:30,561 Successfully installed wheel-0.42.0 2024-02-15T23:36:31,017 WARNING: There was an error checking the latest version of pip. 2024-02-15T23:36:31,408 Installing backend dependencies: finished with status 'done' 2024-02-15T23:36:31,414 Created temporary directory: /tmp/pip-modern-metadata-8p6q4v0i 2024-02-15T23:36:31,420 Preparing metadata (pyproject.toml): started 2024-02-15T23:36:31,422 Running command Preparing metadata (pyproject.toml) 2024-02-15T23:36:33,584 running dist_info 2024-02-15T23:36:33,600 creating /tmp/pip-modern-metadata-8p6q4v0i/cryodrgn.egg-info 2024-02-15T23:36:33,613 writing /tmp/pip-modern-metadata-8p6q4v0i/cryodrgn.egg-info/PKG-INFO 2024-02-15T23:36:33,621 writing dependency_links to /tmp/pip-modern-metadata-8p6q4v0i/cryodrgn.egg-info/dependency_links.txt 2024-02-15T23:36:33,625 writing entry points to /tmp/pip-modern-metadata-8p6q4v0i/cryodrgn.egg-info/entry_points.txt 2024-02-15T23:36:33,628 writing requirements to /tmp/pip-modern-metadata-8p6q4v0i/cryodrgn.egg-info/requires.txt 2024-02-15T23:36:33,630 writing top-level names to /tmp/pip-modern-metadata-8p6q4v0i/cryodrgn.egg-info/top_level.txt 2024-02-15T23:36:33,633 writing manifest file '/tmp/pip-modern-metadata-8p6q4v0i/cryodrgn.egg-info/SOURCES.txt' 2024-02-15T23:36:33,772 /tmp/pip-build-env-tczjzlpf/overlay/lib/python3.7/site-packages/setuptools/config/pyprojecttoml.py:66: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. 2024-02-15T23:36:33,772 config = read_configuration(filepath, True, ignore_option_errors, dist) 2024-02-15T23:36:33,773 listing git files failed - pretending there aren't any 2024-02-15T23:36:33,793 reading manifest file '/tmp/pip-modern-metadata-8p6q4v0i/cryodrgn.egg-info/SOURCES.txt' 2024-02-15T23:36:33,800 reading manifest template 'MANIFEST.in' 2024-02-15T23:36:33,806 adding license file 'LICENSE.txt' 2024-02-15T23:36:33,820 writing manifest file '/tmp/pip-modern-metadata-8p6q4v0i/cryodrgn.egg-info/SOURCES.txt' 2024-02-15T23:36:33,822 creating '/tmp/pip-modern-metadata-8p6q4v0i/cryodrgn-3.2.0a0.dist-info' 2024-02-15T23:36:34,154 Preparing metadata (pyproject.toml): finished with status 'done' 2024-02-15T23:36:34,174 Source in /tmp/pip-wheel-i3gcm97f/cryodrgn_b1bb733ab9ef4360b56cd678bcbc46f0 has version 3.2.0a0, which satisfies requirement cryodrgn==3.2.0a0 from https://files.pythonhosted.org/packages/f2/8b/00d75ab0c8fb63f1bf59c2322d38b3e63c79882cfc9071792af0800b9c8c/cryodrgn-3.2.0a0.tar.gz 2024-02-15T23:36:34,176 Removed cryodrgn==3.2.0a0 from https://files.pythonhosted.org/packages/f2/8b/00d75ab0c8fb63f1bf59c2322d38b3e63c79882cfc9071792af0800b9c8c/cryodrgn-3.2.0a0.tar.gz from build tracker '/tmp/pip-build-tracker-tys21fnr' 2024-02-15T23:36:34,196 Created temporary directory: /tmp/pip-unpack-837tno59 2024-02-15T23:36:34,198 Created temporary directory: /tmp/pip-unpack-b5rimw7w 2024-02-15T23:36:34,308 Building wheels for collected packages: cryodrgn 2024-02-15T23:36:34,318 Created temporary directory: /tmp/pip-wheel-cyh3h0_h 2024-02-15T23:36:34,318 Destination directory: /tmp/pip-wheel-cyh3h0_h 2024-02-15T23:36:34,323 Building wheel for cryodrgn (pyproject.toml): started 2024-02-15T23:36:34,325 Running command Building wheel for cryodrgn (pyproject.toml) 2024-02-15T23:36:36,350 running bdist_wheel 2024-02-15T23:36:36,414 running build 2024-02-15T23:36:36,414 running build_py 2024-02-15T23:36:36,432 creating build 2024-02-15T23:36:36,433 creating build/lib 2024-02-15T23:36:36,435 creating build/lib/cryodrgn 2024-02-15T23:36:36,437 copying cryodrgn/beta_schedule.py -> build/lib/cryodrgn 2024-02-15T23:36:36,441 copying cryodrgn/command_line.py -> build/lib/cryodrgn 2024-02-15T23:36:36,445 copying cryodrgn/dataset.py -> build/lib/cryodrgn 2024-02-15T23:36:36,450 copying cryodrgn/models.py -> build/lib/cryodrgn 2024-02-15T23:36:36,456 copying cryodrgn/config.py -> build/lib/cryodrgn 2024-02-15T23:36:36,459 copying cryodrgn/pose_search.py -> build/lib/cryodrgn 2024-02-15T23:36:36,464 copying cryodrgn/source.py -> build/lib/cryodrgn 2024-02-15T23:36:36,469 copying cryodrgn/make_healpy.py -> build/lib/cryodrgn 2024-02-15T23:36:36,472 copying cryodrgn/mrc.py -> build/lib/cryodrgn 2024-02-15T23:36:36,477 copying cryodrgn/losses.py -> build/lib/cryodrgn 2024-02-15T23:36:36,480 copying cryodrgn/_version.py -> build/lib/cryodrgn 2024-02-15T23:36:36,483 copying cryodrgn/analysis.py -> build/lib/cryodrgn 2024-02-15T23:36:36,488 copying cryodrgn/fft.py -> build/lib/cryodrgn 2024-02-15T23:36:36,492 copying cryodrgn/lie_tools.py -> build/lib/cryodrgn 2024-02-15T23:36:36,497 copying cryodrgn/pose.py -> build/lib/cryodrgn 2024-02-15T23:36:36,502 copying cryodrgn/utils.py -> build/lib/cryodrgn 2024-02-15T23:36:36,507 copying cryodrgn/ctf.py -> build/lib/cryodrgn 2024-02-15T23:36:36,511 copying cryodrgn/__init__.py -> build/lib/cryodrgn 2024-02-15T23:36:36,515 copying cryodrgn/starfile.py -> build/lib/cryodrgn 2024-02-15T23:36:36,520 copying cryodrgn/so3_grid.py -> build/lib/cryodrgn 2024-02-15T23:36:36,524 copying cryodrgn/lattice.py -> build/lib/cryodrgn 2024-02-15T23:36:36,529 copying cryodrgn/shift_grid.py -> build/lib/cryodrgn 2024-02-15T23:36:36,533 copying cryodrgn/shift_grid3.py -> build/lib/cryodrgn 2024-02-15T23:36:36,541 creating build/lib/cryodrgn/commands_utils 2024-02-15T23:36:36,543 copying cryodrgn/commands_utils/write_star.py -> build/lib/cryodrgn/commands_utils 2024-02-15T23:36:36,548 copying cryodrgn/commands_utils/filter_mrcs.py -> build/lib/cryodrgn/commands_utils 2024-02-15T23:36:36,552 copying cryodrgn/commands_utils/fsc.py -> build/lib/cryodrgn/commands_utils 2024-02-15T23:36:36,556 copying cryodrgn/commands_utils/view_header.py -> build/lib/cryodrgn/commands_utils 2024-02-15T23:36:36,560 copying cryodrgn/commands_utils/view_mrcs.py -> build/lib/cryodrgn/commands_utils 2024-02-15T23:36:36,564 copying cryodrgn/commands_utils/add_psize.py -> build/lib/cryodrgn/commands_utils 2024-02-15T23:36:36,568 copying cryodrgn/commands_utils/concat_pkls.py -> build/lib/cryodrgn/commands_utils 2024-02-15T23:36:36,573 copying cryodrgn/commands_utils/filter_pkl.py -> build/lib/cryodrgn/commands_utils 2024-02-15T23:36:36,577 copying cryodrgn/commands_utils/phase_flip.py -> build/lib/cryodrgn/commands_utils 2024-02-15T23:36:36,581 copying cryodrgn/commands_utils/flip_hand.py -> build/lib/cryodrgn/commands_utils 2024-02-15T23:36:36,585 copying cryodrgn/commands_utils/translate_mrcs.py -> build/lib/cryodrgn/commands_utils 2024-02-15T23:36:36,589 copying cryodrgn/commands_utils/write_cs.py -> build/lib/cryodrgn/commands_utils 2024-02-15T23:36:36,593 copying cryodrgn/commands_utils/__init__.py -> build/lib/cryodrgn/commands_utils 2024-02-15T23:36:36,597 copying cryodrgn/commands_utils/invert_contrast.py -> build/lib/cryodrgn/commands_utils 2024-02-15T23:36:36,601 copying cryodrgn/commands_utils/view_cs_header.py -> build/lib/cryodrgn/commands_utils 2024-02-15T23:36:36,605 copying cryodrgn/commands_utils/clean.py -> build/lib/cryodrgn/commands_utils 2024-02-15T23:36:36,610 copying cryodrgn/commands_utils/select_clusters.py -> build/lib/cryodrgn/commands_utils 2024-02-15T23:36:36,614 copying cryodrgn/commands_utils/filter_star.py -> build/lib/cryodrgn/commands_utils 2024-02-15T23:36:36,618 copying cryodrgn/commands_utils/select_random.py -> build/lib/cryodrgn/commands_utils 2024-02-15T23:36:36,625 creating build/lib/cryodrgn/commands 2024-02-15T23:36:36,628 copying cryodrgn/commands/eval_vol.py -> build/lib/cryodrgn/commands 2024-02-15T23:36:36,633 copying cryodrgn/commands/backproject_voxel.py -> build/lib/cryodrgn/commands 2024-02-15T23:36:36,638 copying cryodrgn/commands/abinit_homo.py -> build/lib/cryodrgn/commands 2024-02-15T23:36:36,644 copying cryodrgn/commands/graph_traversal.py -> build/lib/cryodrgn/commands 2024-02-15T23:36:36,649 copying cryodrgn/commands/view_config.py -> build/lib/cryodrgn/commands 2024-02-15T23:36:36,653 copying cryodrgn/commands/pc_traversal.py -> build/lib/cryodrgn/commands 2024-02-15T23:36:36,657 copying cryodrgn/commands/train_nn.py -> build/lib/cryodrgn/commands 2024-02-15T23:36:36,663 copying cryodrgn/commands/preprocess.py -> build/lib/cryodrgn/commands 2024-02-15T23:36:36,667 copying cryodrgn/commands/parse_ctf_csparc.py -> build/lib/cryodrgn/commands 2024-02-15T23:36:36,670 copying cryodrgn/commands/parse_ctf_star.py -> build/lib/cryodrgn/commands 2024-02-15T23:36:36,674 copying cryodrgn/commands/train_vae.py -> build/lib/cryodrgn/commands 2024-02-15T23:36:36,679 copying cryodrgn/commands/analyze_landscape.py -> build/lib/cryodrgn/commands 2024-02-15T23:36:36,684 copying cryodrgn/commands/abinit_het.py -> build/lib/cryodrgn/commands 2024-02-15T23:36:36,689 copying cryodrgn/commands/__init__.py -> build/lib/cryodrgn/commands 2024-02-15T23:36:36,692 copying cryodrgn/commands/analyze_landscape_full.py -> build/lib/cryodrgn/commands 2024-02-15T23:36:36,697 copying cryodrgn/commands/downsample.py -> build/lib/cryodrgn/commands 2024-02-15T23:36:36,700 copying cryodrgn/commands/analyze.py -> build/lib/cryodrgn/commands 2024-02-15T23:36:36,705 copying cryodrgn/commands/parse_pose_csparc.py -> build/lib/cryodrgn/commands 2024-02-15T23:36:36,708 copying cryodrgn/commands/eval_images.py -> build/lib/cryodrgn/commands 2024-02-15T23:36:36,713 copying cryodrgn/commands/filter.py -> build/lib/cryodrgn/commands 2024-02-15T23:36:36,717 copying cryodrgn/commands/parse_pose_star.py -> build/lib/cryodrgn/commands 2024-02-15T23:36:36,720 copying cryodrgn/commands/direct_traversal.py -> build/lib/cryodrgn/commands 2024-02-15T23:36:36,723 running egg_info 2024-02-15T23:36:36,736 writing cryodrgn.egg-info/PKG-INFO 2024-02-15T23:36:36,742 writing dependency_links to cryodrgn.egg-info/dependency_links.txt 2024-02-15T23:36:36,745 writing entry points to cryodrgn.egg-info/entry_points.txt 2024-02-15T23:36:36,748 writing requirements to cryodrgn.egg-info/requires.txt 2024-02-15T23:36:36,750 writing top-level names to cryodrgn.egg-info/top_level.txt 2024-02-15T23:36:36,838 /tmp/pip-build-env-tczjzlpf/overlay/lib/python3.7/site-packages/setuptools/config/pyprojecttoml.py:66: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. 2024-02-15T23:36:36,839 config = read_configuration(filepath, True, ignore_option_errors, dist) 2024-02-15T23:36:36,839 listing git files failed - pretending there aren't any 2024-02-15T23:36:36,858 reading manifest file 'cryodrgn.egg-info/SOURCES.txt' 2024-02-15T23:36:36,921 reading manifest template 'MANIFEST.in' 2024-02-15T23:36:36,926 adding license file 'LICENSE.txt' 2024-02-15T23:36:36,958 writing manifest file 'cryodrgn.egg-info/SOURCES.txt' 2024-02-15T23:36:36,986 copying cryodrgn/healpy_grid.json -> build/lib/cryodrgn 2024-02-15T23:36:37,504 creating build/lib/cryodrgn/templates 2024-02-15T23:36:37,506 copying cryodrgn/templates/cryoDRGN_ET_viz_template.ipynb -> build/lib/cryodrgn/templates 2024-02-15T23:36:37,512 copying cryodrgn/templates/cryoDRGN_analyze_landscape_template.ipynb -> build/lib/cryodrgn/templates 2024-02-15T23:36:37,518 copying cryodrgn/templates/cryoDRGN_figures_template.ipynb -> build/lib/cryodrgn/templates 2024-02-15T23:36:37,523 copying cryodrgn/templates/cryoDRGN_filtering_template.ipynb -> build/lib/cryodrgn/templates 2024-02-15T23:36:37,529 copying cryodrgn/templates/cryoDRGN_viz_template.ipynb -> build/lib/cryodrgn/templates 2024-02-15T23:36:37,579 installing to build/bdist.linux-armv7l/wheel 2024-02-15T23:36:37,580 running install 2024-02-15T23:36:37,640 running install_lib 2024-02-15T23:36:37,656 creating build/bdist.linux-armv7l 2024-02-15T23:36:37,657 creating build/bdist.linux-armv7l/wheel 2024-02-15T23:36:37,662 creating build/bdist.linux-armv7l/wheel/cryodrgn 2024-02-15T23:36:37,665 copying build/lib/cryodrgn/beta_schedule.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-02-15T23:36:37,670 copying build/lib/cryodrgn/command_line.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-02-15T23:36:37,674 copying build/lib/cryodrgn/dataset.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-02-15T23:36:37,681 copying build/lib/cryodrgn/models.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-02-15T23:36:37,688 copying build/lib/cryodrgn/healpy_grid.json -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-02-15T23:36:38,211 copying build/lib/cryodrgn/config.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-02-15T23:36:38,217 creating build/bdist.linux-armv7l/wheel/cryodrgn/templates 2024-02-15T23:36:38,220 copying build/lib/cryodrgn/templates/cryoDRGN_filtering_template.ipynb -> build/bdist.linux-armv7l/wheel/cryodrgn/templates 2024-02-15T23:36:38,227 copying build/lib/cryodrgn/templates/cryoDRGN_figures_template.ipynb -> build/bdist.linux-armv7l/wheel/cryodrgn/templates 2024-02-15T23:36:38,232 copying build/lib/cryodrgn/templates/cryoDRGN_viz_template.ipynb -> build/bdist.linux-armv7l/wheel/cryodrgn/templates 2024-02-15T23:36:38,238 copying build/lib/cryodrgn/templates/cryoDRGN_analyze_landscape_template.ipynb -> build/bdist.linux-armv7l/wheel/cryodrgn/templates 2024-02-15T23:36:38,243 copying build/lib/cryodrgn/templates/cryoDRGN_ET_viz_template.ipynb -> build/bdist.linux-armv7l/wheel/cryodrgn/templates 2024-02-15T23:36:38,250 copying build/lib/cryodrgn/pose_search.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-02-15T23:36:38,255 copying build/lib/cryodrgn/source.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-02-15T23:36:38,260 copying build/lib/cryodrgn/make_healpy.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-02-15T23:36:38,264 copying build/lib/cryodrgn/mrc.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-02-15T23:36:38,268 copying build/lib/cryodrgn/losses.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-02-15T23:36:38,272 copying build/lib/cryodrgn/_version.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-02-15T23:36:38,276 copying build/lib/cryodrgn/analysis.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-02-15T23:36:38,281 copying build/lib/cryodrgn/fft.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-02-15T23:36:38,285 copying build/lib/cryodrgn/lie_tools.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-02-15T23:36:38,289 copying build/lib/cryodrgn/pose.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-02-15T23:36:38,293 copying build/lib/cryodrgn/utils.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-02-15T23:36:38,297 copying build/lib/cryodrgn/ctf.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-02-15T23:36:38,301 copying build/lib/cryodrgn/__init__.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-02-15T23:36:38,304 copying build/lib/cryodrgn/starfile.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-02-15T23:36:38,308 copying build/lib/cryodrgn/so3_grid.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-02-15T23:36:38,313 creating build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-02-15T23:36:38,315 copying build/lib/cryodrgn/commands_utils/write_star.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-02-15T23:36:38,320 copying build/lib/cryodrgn/commands_utils/filter_mrcs.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-02-15T23:36:38,329 copying build/lib/cryodrgn/commands_utils/fsc.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-02-15T23:36:38,332 copying build/lib/cryodrgn/commands_utils/view_header.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-02-15T23:36:38,336 copying build/lib/cryodrgn/commands_utils/view_mrcs.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-02-15T23:36:38,339 copying build/lib/cryodrgn/commands_utils/add_psize.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-02-15T23:36:38,343 copying build/lib/cryodrgn/commands_utils/concat_pkls.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-02-15T23:36:38,346 copying build/lib/cryodrgn/commands_utils/filter_pkl.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-02-15T23:36:38,350 copying build/lib/cryodrgn/commands_utils/phase_flip.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-02-15T23:36:38,354 copying build/lib/cryodrgn/commands_utils/flip_hand.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-02-15T23:36:38,361 copying build/lib/cryodrgn/commands_utils/translate_mrcs.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-02-15T23:36:38,364 copying build/lib/cryodrgn/commands_utils/write_cs.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-02-15T23:36:38,368 copying build/lib/cryodrgn/commands_utils/__init__.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-02-15T23:36:38,371 copying build/lib/cryodrgn/commands_utils/invert_contrast.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-02-15T23:36:38,374 copying build/lib/cryodrgn/commands_utils/view_cs_header.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-02-15T23:36:38,378 copying build/lib/cryodrgn/commands_utils/clean.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-02-15T23:36:38,382 copying build/lib/cryodrgn/commands_utils/select_clusters.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-02-15T23:36:38,386 copying build/lib/cryodrgn/commands_utils/filter_star.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-02-15T23:36:38,390 copying build/lib/cryodrgn/commands_utils/select_random.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-02-15T23:36:38,393 copying build/lib/cryodrgn/lattice.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-02-15T23:36:38,397 copying build/lib/cryodrgn/shift_grid.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-02-15T23:36:38,401 copying build/lib/cryodrgn/shift_grid3.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-02-15T23:36:38,407 creating build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-02-15T23:36:38,409 copying build/lib/cryodrgn/commands/eval_vol.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-02-15T23:36:38,413 copying build/lib/cryodrgn/commands/backproject_voxel.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-02-15T23:36:38,417 copying build/lib/cryodrgn/commands/abinit_homo.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-02-15T23:36:38,422 copying build/lib/cryodrgn/commands/graph_traversal.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-02-15T23:36:38,426 copying build/lib/cryodrgn/commands/view_config.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-02-15T23:36:38,430 copying build/lib/cryodrgn/commands/pc_traversal.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-02-15T23:36:38,434 copying build/lib/cryodrgn/commands/train_nn.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-02-15T23:36:38,439 copying build/lib/cryodrgn/commands/preprocess.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-02-15T23:36:38,443 copying build/lib/cryodrgn/commands/parse_ctf_csparc.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-02-15T23:36:38,446 copying build/lib/cryodrgn/commands/parse_ctf_star.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-02-15T23:36:38,450 copying build/lib/cryodrgn/commands/train_vae.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-02-15T23:36:38,455 copying build/lib/cryodrgn/commands/analyze_landscape.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-02-15T23:36:38,460 copying build/lib/cryodrgn/commands/abinit_het.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-02-15T23:36:38,465 copying build/lib/cryodrgn/commands/__init__.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-02-15T23:36:38,468 copying build/lib/cryodrgn/commands/analyze_landscape_full.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-02-15T23:36:38,473 copying build/lib/cryodrgn/commands/downsample.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-02-15T23:36:38,477 copying build/lib/cryodrgn/commands/analyze.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-02-15T23:36:38,482 copying build/lib/cryodrgn/commands/parse_pose_csparc.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-02-15T23:36:38,485 copying build/lib/cryodrgn/commands/eval_images.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-02-15T23:36:38,490 copying build/lib/cryodrgn/commands/filter.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-02-15T23:36:38,494 copying build/lib/cryodrgn/commands/parse_pose_star.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-02-15T23:36:38,498 copying build/lib/cryodrgn/commands/direct_traversal.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-02-15T23:36:38,501 running install_egg_info 2024-02-15T23:36:38,515 Copying cryodrgn.egg-info to build/bdist.linux-armv7l/wheel/cryodrgn-3.2.0a0-py3.7.egg-info 2024-02-15T23:36:38,543 running install_scripts 2024-02-15T23:36:38,607 creating build/bdist.linux-armv7l/wheel/cryodrgn-3.2.0a0.dist-info/WHEEL 2024-02-15T23:36:38,612 creating '/tmp/pip-wheel-cyh3h0_h/.tmp-goa9kjst/cryodrgn-3.2.0a0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-02-15T23:36:38,618 adding 'cryodrgn/__init__.py' 2024-02-15T23:36:38,620 adding 'cryodrgn/_version.py' 2024-02-15T23:36:38,626 adding 'cryodrgn/analysis.py' 2024-02-15T23:36:38,629 adding 'cryodrgn/beta_schedule.py' 2024-02-15T23:36:38,632 adding 'cryodrgn/command_line.py' 2024-02-15T23:36:38,634 adding 'cryodrgn/config.py' 2024-02-15T23:36:38,638 adding 'cryodrgn/ctf.py' 2024-02-15T23:36:38,644 adding 'cryodrgn/dataset.py' 2024-02-15T23:36:38,647 adding 'cryodrgn/fft.py' 2024-02-15T23:36:40,594 adding 'cryodrgn/healpy_grid.json' 2024-02-15T23:36:40,804 adding 'cryodrgn/lattice.py' 2024-02-15T23:36:40,808 adding 'cryodrgn/lie_tools.py' 2024-02-15T23:36:40,811 adding 'cryodrgn/losses.py' 2024-02-15T23:36:40,814 adding 'cryodrgn/make_healpy.py' 2024-02-15T23:36:40,824 adding 'cryodrgn/models.py' 2024-02-15T23:36:40,829 adding 'cryodrgn/mrc.py' 2024-02-15T23:36:40,833 adding 'cryodrgn/pose.py' 2024-02-15T23:36:40,838 adding 'cryodrgn/pose_search.py' 2024-02-15T23:36:40,841 adding 'cryodrgn/shift_grid.py' 2024-02-15T23:36:40,844 adding 'cryodrgn/shift_grid3.py' 2024-02-15T23:36:40,847 adding 'cryodrgn/so3_grid.py' 2024-02-15T23:36:40,853 adding 'cryodrgn/source.py' 2024-02-15T23:36:40,856 adding 'cryodrgn/starfile.py' 2024-02-15T23:36:40,860 adding 'cryodrgn/utils.py' 2024-02-15T23:36:40,864 adding 'cryodrgn/commands/__init__.py' 2024-02-15T23:36:40,874 adding 'cryodrgn/commands/abinit_het.py' 2024-02-15T23:36:40,882 adding 'cryodrgn/commands/abinit_homo.py' 2024-02-15T23:36:40,888 adding 'cryodrgn/commands/analyze.py' 2024-02-15T23:36:40,895 adding 'cryodrgn/commands/analyze_landscape.py' 2024-02-15T23:36:40,900 adding 'cryodrgn/commands/analyze_landscape_full.py' 2024-02-15T23:36:40,906 adding 'cryodrgn/commands/backproject_voxel.py' 2024-02-15T23:36:40,909 adding 'cryodrgn/commands/direct_traversal.py' 2024-02-15T23:36:40,913 adding 'cryodrgn/commands/downsample.py' 2024-02-15T23:36:40,919 adding 'cryodrgn/commands/eval_images.py' 2024-02-15T23:36:40,923 adding 'cryodrgn/commands/eval_vol.py' 2024-02-15T23:36:40,929 adding 'cryodrgn/commands/filter.py' 2024-02-15T23:36:40,933 adding 'cryodrgn/commands/graph_traversal.py' 2024-02-15T23:36:40,937 adding 'cryodrgn/commands/parse_ctf_csparc.py' 2024-02-15T23:36:40,941 adding 'cryodrgn/commands/parse_ctf_star.py' 2024-02-15T23:36:40,944 adding 'cryodrgn/commands/parse_pose_csparc.py' 2024-02-15T23:36:40,948 adding 'cryodrgn/commands/parse_pose_star.py' 2024-02-15T23:36:40,951 adding 'cryodrgn/commands/pc_traversal.py' 2024-02-15T23:36:40,955 adding 'cryodrgn/commands/preprocess.py' 2024-02-15T23:36:40,961 adding 'cryodrgn/commands/train_nn.py' 2024-02-15T23:36:40,971 adding 'cryodrgn/commands/train_vae.py' 2024-02-15T23:36:40,975 adding 'cryodrgn/commands/view_config.py' 2024-02-15T23:36:40,980 adding 'cryodrgn/commands_utils/__init__.py' 2024-02-15T23:36:40,983 adding 'cryodrgn/commands_utils/add_psize.py' 2024-02-15T23:36:40,987 adding 'cryodrgn/commands_utils/clean.py' 2024-02-15T23:36:40,991 adding 'cryodrgn/commands_utils/concat_pkls.py' 2024-02-15T23:36:40,994 adding 'cryodrgn/commands_utils/filter_mrcs.py' 2024-02-15T23:36:40,997 adding 'cryodrgn/commands_utils/filter_pkl.py' 2024-02-15T23:36:41,000 adding 'cryodrgn/commands_utils/filter_star.py' 2024-02-15T23:36:41,003 adding 'cryodrgn/commands_utils/flip_hand.py' 2024-02-15T23:36:41,007 adding 'cryodrgn/commands_utils/fsc.py' 2024-02-15T23:36:41,010 adding 'cryodrgn/commands_utils/invert_contrast.py' 2024-02-15T23:36:41,013 adding 'cryodrgn/commands_utils/phase_flip.py' 2024-02-15T23:36:41,017 adding 'cryodrgn/commands_utils/select_clusters.py' 2024-02-15T23:36:41,020 adding 'cryodrgn/commands_utils/select_random.py' 2024-02-15T23:36:41,024 adding 'cryodrgn/commands_utils/translate_mrcs.py' 2024-02-15T23:36:41,027 adding 'cryodrgn/commands_utils/view_cs_header.py' 2024-02-15T23:36:41,030 adding 'cryodrgn/commands_utils/view_header.py' 2024-02-15T23:36:41,033 adding 'cryodrgn/commands_utils/view_mrcs.py' 2024-02-15T23:36:41,037 adding 'cryodrgn/commands_utils/write_cs.py' 2024-02-15T23:36:41,041 adding 'cryodrgn/commands_utils/write_star.py' 2024-02-15T23:36:41,048 adding 'cryodrgn/templates/cryoDRGN_ET_viz_template.ipynb' 2024-02-15T23:36:41,053 adding 'cryodrgn/templates/cryoDRGN_analyze_landscape_template.ipynb' 2024-02-15T23:36:41,058 adding 'cryodrgn/templates/cryoDRGN_figures_template.ipynb' 2024-02-15T23:36:41,065 adding 'cryodrgn/templates/cryoDRGN_filtering_template.ipynb' 2024-02-15T23:36:41,072 adding 'cryodrgn/templates/cryoDRGN_viz_template.ipynb' 2024-02-15T23:36:41,089 adding 'cryodrgn-3.2.0a0.dist-info/LICENSE.txt' 2024-02-15T23:36:41,101 adding 'cryodrgn-3.2.0a0.dist-info/METADATA' 2024-02-15T23:36:41,104 adding 'cryodrgn-3.2.0a0.dist-info/WHEEL' 2024-02-15T23:36:41,107 adding 'cryodrgn-3.2.0a0.dist-info/entry_points.txt' 2024-02-15T23:36:41,109 adding 'cryodrgn-3.2.0a0.dist-info/top_level.txt' 2024-02-15T23:36:41,114 adding 'cryodrgn-3.2.0a0.dist-info/RECORD' 2024-02-15T23:36:41,157 removing build/bdist.linux-armv7l/wheel 2024-02-15T23:36:41,414 Building wheel for cryodrgn (pyproject.toml): finished with status 'done' 2024-02-15T23:36:41,480 Created wheel for cryodrgn: filename=cryodrgn-3.2.0a0-py3-none-any.whl size=1153854 sha256=ea2d2f810968f04912365abdce1cf74f011e1b5be2b671a741a705ef827f2d4a 2024-02-15T23:36:41,482 Stored in directory: /tmp/pip-ephem-wheel-cache-9ajw2g94/wheels/6b/73/36/f49d646a765e1018ba59542eb69aaa6592878755a7306e93ca 2024-02-15T23:36:41,527 Successfully built cryodrgn 2024-02-15T23:36:41,610 Removed build tracker: '/tmp/pip-build-tracker-tys21fnr'