2024-02-16T22:18:31,897 Created temporary directory: /tmp/pip-build-tracker-syspswye 2024-02-16T22:18:31,899 Initialized build tracking at /tmp/pip-build-tracker-syspswye 2024-02-16T22:18:31,900 Created build tracker: /tmp/pip-build-tracker-syspswye 2024-02-16T22:18:31,929 Entered build tracker: /tmp/pip-build-tracker-syspswye 2024-02-16T22:18:31,937 Created temporary directory: /tmp/pip-wheel-rxvsk_0o 2024-02-16T22:18:31,954 Created temporary directory: /tmp/pip-ephem-wheel-cache-t2349iq4 2024-02-16T22:18:32,311 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-02-16T22:18:32,335 2 location(s) to search for versions of sigprofilerassignment: 2024-02-16T22:18:32,335 * https://pypi.org/simple/sigprofilerassignment/ 2024-02-16T22:18:32,335 * https://www.piwheels.org/simple/sigprofilerassignment/ 2024-02-16T22:18:32,342 Fetching project page and analyzing links: https://pypi.org/simple/sigprofilerassignment/ 2024-02-16T22:18:32,344 Getting page 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2024-02-16T22:18:32,881 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/9d/56/1968aaf35ec8597df716ebb6c5cbca6a61892f8a293150f312985a500231/SigProfilerAssignment-0.0.5-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2024-02-16T22:18:32,882 Found link https://files.pythonhosted.org/packages/79/c4/ed14da5d80f43e136c7638db1341dda950f510b9e283f3233a8aa7aabf32/SigProfilerAssignment-0.0.5.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.5 2024-02-16T22:18:32,882 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/66/ab/85f6ffb88701a726aa49666e007b52dbd3de21f036a6b8c2ebdeb9f1e462/SigProfilerAssignment-0.0.6-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2024-02-16T22:18:32,884 Found link 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https://files.pythonhosted.org/packages/af/fb/e1dc6d89cf5753a64ba91adb630b2b299ee5849056318d44e1e357de8780/SigProfilerAssignment-0.1.0.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.1.0 2024-02-16T22:18:32,950 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/9f/08/fe4383ee580e18a34271be597b35959152502d4d4faf4df58a7a80ede5a8/SigProfilerAssignment-0.1.1-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2024-02-16T22:18:32,951 Found link https://files.pythonhosted.org/packages/7f/7f/6ec76f934311e97bb2fc3f3c578cc3ec6fd15383a5c0ae3bb6f92f4bccfa/SigProfilerAssignment-0.1.1.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.1.1 2024-02-16T22:18:32,951 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/9d/f8/dc024a670e14f1105d727b30a26151764bbe0a19681649e500a39a5c0180/SigProfilerAssignment-0.1.2-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2024-02-16T22:18:32,952 Found link https://files.pythonhosted.org/packages/46/e6/d2cbd286bcdfd6344de95777e91e22722b5b7cc5edb7e8fd8f93f0c05913/SigProfilerAssignment-0.1.2.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.1.2 2024-02-16T22:18:32,953 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/5f/af/3d33b831ec9e5beadc94e84c5eb7e8752fc94e419ffbd6e56e1937dc24d0/SigProfilerAssignment-0.1.3-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2024-02-16T22:18:32,953 Found link https://files.pythonhosted.org/packages/68/db/efeed9f399d5c5a39c84548d0d1246d238c951a245cb8c76ef8b8f9c7282/SigProfilerAssignment-0.1.3.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.1.3 2024-02-16T22:18:32,958 Fetching project page and analyzing links: https://www.piwheels.org/simple/sigprofilerassignment/ 2024-02-16T22:18:32,958 Getting page 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2024-02-16T22:18:33,177 Skipping link: not a file: https://pypi.org/simple/sigprofilerassignment/ 2024-02-16T22:18:33,200 Given no hashes to check 1 links for project 'sigprofilerassignment': discarding no candidates 2024-02-16T22:18:33,219 Collecting sigprofilerassignment==0.1.3 2024-02-16T22:18:33,222 Created temporary directory: /tmp/pip-unpack-ciga4c8a 2024-02-16T22:18:33,463 Downloading SigProfilerAssignment-0.1.3.tar.gz (5.4 MB) 2024-02-16T22:18:36,034 Added sigprofilerassignment==0.1.3 from https://files.pythonhosted.org/packages/68/db/efeed9f399d5c5a39c84548d0d1246d238c951a245cb8c76ef8b8f9c7282/SigProfilerAssignment-0.1.3.tar.gz to build tracker '/tmp/pip-build-tracker-syspswye' 2024-02-16T22:18:36,037 Running setup.py (path:/tmp/pip-wheel-rxvsk_0o/sigprofilerassignment_f96621379dee4e129e9108c55e1d0e91/setup.py) egg_info for package sigprofilerassignment 2024-02-16T22:18:36,038 Created temporary directory: /tmp/pip-pip-egg-info-6tnm_q_h 2024-02-16T22:18:36,038 Preparing metadata (setup.py): started 2024-02-16T22:18:36,040 Running command python setup.py egg_info 2024-02-16T22:18:37,105 running egg_info 2024-02-16T22:18:37,106 creating /tmp/pip-pip-egg-info-6tnm_q_h/SigProfilerAssignment.egg-info 2024-02-16T22:18:37,131 writing /tmp/pip-pip-egg-info-6tnm_q_h/SigProfilerAssignment.egg-info/PKG-INFO 2024-02-16T22:18:37,135 writing dependency_links to /tmp/pip-pip-egg-info-6tnm_q_h/SigProfilerAssignment.egg-info/dependency_links.txt 2024-02-16T22:18:37,138 writing requirements to /tmp/pip-pip-egg-info-6tnm_q_h/SigProfilerAssignment.egg-info/requires.txt 2024-02-16T22:18:37,139 writing top-level names to /tmp/pip-pip-egg-info-6tnm_q_h/SigProfilerAssignment.egg-info/top_level.txt 2024-02-16T22:18:37,140 writing manifest file '/tmp/pip-pip-egg-info-6tnm_q_h/SigProfilerAssignment.egg-info/SOURCES.txt' 2024-02-16T22:18:37,217 reading manifest file '/tmp/pip-pip-egg-info-6tnm_q_h/SigProfilerAssignment.egg-info/SOURCES.txt' 2024-02-16T22:18:37,218 reading manifest template 'MANIFEST.in' 2024-02-16T22:18:37,232 adding license file 'LICENSE.txt' 2024-02-16T22:18:37,240 writing manifest file '/tmp/pip-pip-egg-info-6tnm_q_h/SigProfilerAssignment.egg-info/SOURCES.txt' 2024-02-16T22:18:37,348 Preparing metadata (setup.py): finished with status 'done' 2024-02-16T22:18:37,352 Source in /tmp/pip-wheel-rxvsk_0o/sigprofilerassignment_f96621379dee4e129e9108c55e1d0e91 has version 0.1.3, which satisfies requirement sigprofilerassignment==0.1.3 from https://files.pythonhosted.org/packages/68/db/efeed9f399d5c5a39c84548d0d1246d238c951a245cb8c76ef8b8f9c7282/SigProfilerAssignment-0.1.3.tar.gz 2024-02-16T22:18:37,353 Removed sigprofilerassignment==0.1.3 from https://files.pythonhosted.org/packages/68/db/efeed9f399d5c5a39c84548d0d1246d238c951a245cb8c76ef8b8f9c7282/SigProfilerAssignment-0.1.3.tar.gz from build tracker '/tmp/pip-build-tracker-syspswye' 2024-02-16T22:18:37,359 Created temporary directory: /tmp/pip-unpack-_jwfsu_k 2024-02-16T22:18:37,360 Created temporary directory: /tmp/pip-unpack-ju46b3se 2024-02-16T22:18:37,381 Building wheels for collected packages: sigprofilerassignment 2024-02-16T22:18:37,392 Created temporary directory: /tmp/pip-wheel-mvbozt5d 2024-02-16T22:18:37,392 Building wheel for sigprofilerassignment (setup.py): started 2024-02-16T22:18:37,393 Destination directory: /tmp/pip-wheel-mvbozt5d 2024-02-16T22:18:37,394 Running command python setup.py bdist_wheel 2024-02-16T22:18:38,409 running bdist_wheel 2024-02-16T22:18:38,503 running build 2024-02-16T22:18:38,504 running build_py 2024-02-16T22:18:38,531 creating build 2024-02-16T22:18:38,532 creating build/lib 2024-02-16T22:18:38,532 creating build/lib/SigProfilerAssignment 2024-02-16T22:18:38,534 copying SigProfilerAssignment/single_sample.py -> build/lib/SigProfilerAssignment 2024-02-16T22:18:38,536 copying SigProfilerAssignment/version.py -> build/lib/SigProfilerAssignment 2024-02-16T22:18:38,538 copying SigProfilerAssignment/__init__.py -> build/lib/SigProfilerAssignment 2024-02-16T22:18:38,540 copying SigProfilerAssignment/decompose_subroutines.py -> build/lib/SigProfilerAssignment 2024-02-16T22:18:38,543 copying SigProfilerAssignment/Analyzer.py -> build/lib/SigProfilerAssignment 2024-02-16T22:18:38,546 copying SigProfilerAssignment/decomposition.py -> build/lib/SigProfilerAssignment 2024-02-16T22:18:38,548 running egg_info 2024-02-16T22:18:38,603 writing SigProfilerAssignment.egg-info/PKG-INFO 2024-02-16T22:18:38,607 writing dependency_links to SigProfilerAssignment.egg-info/dependency_links.txt 2024-02-16T22:18:38,609 writing requirements to SigProfilerAssignment.egg-info/requires.txt 2024-02-16T22:18:38,610 writing top-level names to SigProfilerAssignment.egg-info/top_level.txt 2024-02-16T22:18:38,637 reading manifest file 'SigProfilerAssignment.egg-info/SOURCES.txt' 2024-02-16T22:18:38,643 reading manifest template 'MANIFEST.in' 2024-02-16T22:18:38,652 adding license file 'LICENSE.txt' 2024-02-16T22:18:38,662 writing manifest file 'SigProfilerAssignment.egg-info/SOURCES.txt' 2024-02-16T22:18:38,665 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'SigProfilerAssignment.DecompositionPlots' is absent from the `packages` configuration. 2024-02-16T22:18:38,666 !! 2024-02-16T22:18:38,667 ******************************************************************************** 2024-02-16T22:18:38,667 ############################ 2024-02-16T22:18:38,668 # Package would be ignored # 2024-02-16T22:18:38,668 ############################ 2024-02-16T22:18:38,669 Python recognizes 'SigProfilerAssignment.DecompositionPlots' as an importable package[^1], 2024-02-16T22:18:38,669 but it is absent from setuptools' `packages` configuration. 2024-02-16T22:18:38,671 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-16T22:18:38,671 package, please make sure that 'SigProfilerAssignment.DecompositionPlots' is explicitly added 2024-02-16T22:18:38,672 to the `packages` configuration field. 2024-02-16T22:18:38,673 Alternatively, you can also rely on setuptools' discovery methods 2024-02-16T22:18:38,674 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-16T22:18:38,674 instead of `find_packages(...)`/`find:`). 2024-02-16T22:18:38,675 You can read more about "package discovery" on setuptools documentation page: 2024-02-16T22:18:38,677 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-16T22:18:38,678 If you don't want 'SigProfilerAssignment.DecompositionPlots' to be distributed and are 2024-02-16T22:18:38,678 already explicitly excluding 'SigProfilerAssignment.DecompositionPlots' via 2024-02-16T22:18:38,679 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-16T22:18:38,680 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-16T22:18:38,680 combination with a more fine grained `package-data` configuration. 2024-02-16T22:18:38,681 You can read more about "package data files" on setuptools documentation page: 2024-02-16T22:18:38,682 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-16T22:18:38,684 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-16T22:18:38,684 even if it does not contain any `.py` files. 2024-02-16T22:18:38,685 On the other hand, currently there is no concept of package data 2024-02-16T22:18:38,685 directory, all directories are treated like packages. 2024-02-16T22:18:38,686 ******************************************************************************** 2024-02-16T22:18:38,687 !! 2024-02-16T22:18:38,688 check.warn(importable) 2024-02-16T22:18:38,688 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' is absent from the `packages` configuration. 2024-02-16T22:18:38,689 !! 2024-02-16T22:18:38,690 ******************************************************************************** 2024-02-16T22:18:38,690 ############################ 2024-02-16T22:18:38,691 # Package would be ignored # 2024-02-16T22:18:38,691 ############################ 2024-02-16T22:18:38,691 Python recognizes 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' as an importable package[^1], 2024-02-16T22:18:38,692 but it is absent from setuptools' `packages` configuration. 2024-02-16T22:18:38,692 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-16T22:18:38,693 package, please make sure that 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' is explicitly added 2024-02-16T22:18:38,693 to the `packages` configuration field. 2024-02-16T22:18:38,694 Alternatively, you can also rely on setuptools' discovery methods 2024-02-16T22:18:38,694 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-16T22:18:38,695 instead of `find_packages(...)`/`find:`). 2024-02-16T22:18:38,695 You can read more about "package discovery" on setuptools documentation page: 2024-02-16T22:18:38,696 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-16T22:18:38,697 If you don't want 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' to be distributed and are 2024-02-16T22:18:38,697 already explicitly excluding 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' via 2024-02-16T22:18:38,698 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-16T22:18:38,698 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-16T22:18:38,699 combination with a more fine grained `package-data` configuration. 2024-02-16T22:18:38,700 You can read more about "package data files" on setuptools documentation page: 2024-02-16T22:18:38,701 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-16T22:18:38,702 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-16T22:18:38,703 even if it does not contain any `.py` files. 2024-02-16T22:18:38,703 On the other hand, currently there is no concept of package data 2024-02-16T22:18:38,704 directory, all directories are treated like packages. 2024-02-16T22:18:38,704 ******************************************************************************** 2024-02-16T22:18:38,705 !! 2024-02-16T22:18:38,706 check.warn(importable) 2024-02-16T22:18:38,706 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' is absent from the `packages` configuration. 2024-02-16T22:18:38,707 !! 2024-02-16T22:18:38,708 ******************************************************************************** 2024-02-16T22:18:38,708 ############################ 2024-02-16T22:18:38,709 # Package would be ignored # 2024-02-16T22:18:38,710 ############################ 2024-02-16T22:18:38,710 Python recognizes 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' as an importable package[^1], 2024-02-16T22:18:38,711 but it is absent from setuptools' `packages` configuration. 2024-02-16T22:18:38,712 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-16T22:18:38,712 package, please make sure that 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' is explicitly added 2024-02-16T22:18:38,713 to the `packages` configuration field. 2024-02-16T22:18:38,714 Alternatively, you can also rely on setuptools' discovery methods 2024-02-16T22:18:38,715 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-16T22:18:38,715 instead of `find_packages(...)`/`find:`). 2024-02-16T22:18:38,716 You can read more about "package discovery" on setuptools documentation page: 2024-02-16T22:18:38,717 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-16T22:18:38,718 If you don't want 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' to be distributed and are 2024-02-16T22:18:38,719 already explicitly excluding 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' via 2024-02-16T22:18:38,719 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-16T22:18:38,720 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-16T22:18:38,720 combination with a more fine grained `package-data` configuration. 2024-02-16T22:18:38,721 You can read more about "package data files" on setuptools documentation page: 2024-02-16T22:18:38,722 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-16T22:18:38,723 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-16T22:18:38,724 even if it does not contain any `.py` files. 2024-02-16T22:18:38,724 On the other hand, currently there is no concept of package data 2024-02-16T22:18:38,725 directory, all directories are treated like packages. 2024-02-16T22:18:38,726 ******************************************************************************** 2024-02-16T22:18:38,727 !! 2024-02-16T22:18:38,729 check.warn(importable) 2024-02-16T22:18:38,767 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'SigProfilerAssignment.data' is absent from the `packages` configuration. 2024-02-16T22:18:38,768 !! 2024-02-16T22:18:38,769 ******************************************************************************** 2024-02-16T22:18:38,769 ############################ 2024-02-16T22:18:38,770 # Package would be ignored # 2024-02-16T22:18:38,770 ############################ 2024-02-16T22:18:38,771 Python recognizes 'SigProfilerAssignment.data' as an importable package[^1], 2024-02-16T22:18:38,771 but it is absent from setuptools' `packages` configuration. 2024-02-16T22:18:38,772 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-16T22:18:38,773 package, please make sure that 'SigProfilerAssignment.data' is explicitly added 2024-02-16T22:18:38,773 to the `packages` configuration field. 2024-02-16T22:18:38,774 Alternatively, you can also rely on setuptools' discovery methods 2024-02-16T22:18:38,775 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-16T22:18:38,775 instead of `find_packages(...)`/`find:`). 2024-02-16T22:18:38,776 You can read more about "package discovery" on setuptools documentation page: 2024-02-16T22:18:38,778 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-16T22:18:38,779 If you don't want 'SigProfilerAssignment.data' to be distributed and are 2024-02-16T22:18:38,779 already explicitly excluding 'SigProfilerAssignment.data' via 2024-02-16T22:18:38,780 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-16T22:18:38,780 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-16T22:18:38,783 combination with a more fine grained `package-data` configuration. 2024-02-16T22:18:38,788 You can read more about "package data files" on setuptools documentation page: 2024-02-16T22:18:38,790 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-16T22:18:38,792 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-16T22:18:38,793 even if it does not contain any `.py` files. 2024-02-16T22:18:38,793 On the other hand, currently there is no concept of package data 2024-02-16T22:18:38,794 directory, all directories are treated like packages. 2024-02-16T22:18:38,794 ******************************************************************************** 2024-02-16T22:18:38,795 !! 2024-02-16T22:18:38,796 check.warn(importable) 2024-02-16T22:18:38,796 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' is absent from the `packages` configuration. 2024-02-16T22:18:38,797 !! 2024-02-16T22:18:38,799 ******************************************************************************** 2024-02-16T22:18:38,799 ############################ 2024-02-16T22:18:38,800 # Package would be ignored # 2024-02-16T22:18:38,800 ############################ 2024-02-16T22:18:38,801 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' as an importable package[^1], 2024-02-16T22:18:38,802 but it is absent from setuptools' `packages` configuration. 2024-02-16T22:18:38,803 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-16T22:18:38,804 package, please make sure that 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' is explicitly added 2024-02-16T22:18:38,805 to the `packages` configuration field. 2024-02-16T22:18:38,806 Alternatively, you can also rely on setuptools' discovery methods 2024-02-16T22:18:38,807 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-16T22:18:38,807 instead of `find_packages(...)`/`find:`). 2024-02-16T22:18:38,816 You can read more about "package discovery" on setuptools documentation page: 2024-02-16T22:18:38,817 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-16T22:18:38,818 If you don't want 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' to be distributed and are 2024-02-16T22:18:38,818 already explicitly excluding 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' via 2024-02-16T22:18:38,819 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-16T22:18:38,819 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-16T22:18:38,819 combination with a more fine grained `package-data` configuration. 2024-02-16T22:18:38,821 You can read more about "package data files" on setuptools documentation page: 2024-02-16T22:18:38,822 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-16T22:18:38,823 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-16T22:18:38,824 even if it does not contain any `.py` files. 2024-02-16T22:18:38,824 On the other hand, currently there is no concept of package data 2024-02-16T22:18:38,824 directory, all directories are treated like packages. 2024-02-16T22:18:38,825 ******************************************************************************** 2024-02-16T22:18:38,826 !! 2024-02-16T22:18:38,827 check.warn(importable) 2024-02-16T22:18:38,827 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' is absent from the `packages` configuration. 2024-02-16T22:18:38,828 !! 2024-02-16T22:18:38,829 ******************************************************************************** 2024-02-16T22:18:38,829 ############################ 2024-02-16T22:18:38,830 # Package would be ignored # 2024-02-16T22:18:38,830 ############################ 2024-02-16T22:18:38,831 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' as an importable package[^1], 2024-02-16T22:18:38,831 but it is absent from setuptools' `packages` configuration. 2024-02-16T22:18:38,832 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-16T22:18:38,833 package, please make sure that 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' is explicitly added 2024-02-16T22:18:38,833 to the `packages` configuration field. 2024-02-16T22:18:38,834 Alternatively, you can also rely on setuptools' discovery methods 2024-02-16T22:18:38,834 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-16T22:18:38,835 instead of `find_packages(...)`/`find:`). 2024-02-16T22:18:38,836 You can read more about "package discovery" on setuptools documentation page: 2024-02-16T22:18:38,837 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-16T22:18:38,838 If you don't want 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' to be distributed and are 2024-02-16T22:18:38,838 already explicitly excluding 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' via 2024-02-16T22:18:38,839 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-16T22:18:38,839 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-16T22:18:38,840 combination with a more fine grained `package-data` configuration. 2024-02-16T22:18:38,841 You can read more about "package data files" on setuptools documentation page: 2024-02-16T22:18:38,841 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-16T22:18:38,843 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-16T22:18:38,843 even if it does not contain any `.py` files. 2024-02-16T22:18:38,844 On the other hand, currently there is no concept of package data 2024-02-16T22:18:38,844 directory, all directories are treated like packages. 2024-02-16T22:18:38,845 ******************************************************************************** 2024-02-16T22:18:38,846 !! 2024-02-16T22:18:38,846 check.warn(importable) 2024-02-16T22:18:38,847 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'SigProfilerAssignment.data.Reference_Signatures.mm10' is absent from the `packages` configuration. 2024-02-16T22:18:38,847 !! 2024-02-16T22:18:38,848 ******************************************************************************** 2024-02-16T22:18:38,849 ############################ 2024-02-16T22:18:38,849 # Package would be ignored # 2024-02-16T22:18:38,850 ############################ 2024-02-16T22:18:38,851 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.mm10' as an importable package[^1], 2024-02-16T22:18:38,851 but it is absent from setuptools' `packages` configuration. 2024-02-16T22:18:38,852 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-16T22:18:38,853 package, please make sure that 'SigProfilerAssignment.data.Reference_Signatures.mm10' is explicitly added 2024-02-16T22:18:38,853 to the `packages` configuration field. 2024-02-16T22:18:38,854 Alternatively, you can also rely on setuptools' discovery methods 2024-02-16T22:18:38,855 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-16T22:18:38,855 instead of `find_packages(...)`/`find:`). 2024-02-16T22:18:38,856 You can read more about "package discovery" on setuptools documentation page: 2024-02-16T22:18:38,857 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-16T22:18:38,859 If you don't want 'SigProfilerAssignment.data.Reference_Signatures.mm10' to be distributed and are 2024-02-16T22:18:38,859 already explicitly excluding 'SigProfilerAssignment.data.Reference_Signatures.mm10' via 2024-02-16T22:18:38,859 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-16T22:18:38,860 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-16T22:18:38,860 combination with a more fine grained `package-data` configuration. 2024-02-16T22:18:38,861 You can read more about "package data files" on setuptools documentation page: 2024-02-16T22:18:38,862 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-16T22:18:38,863 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-16T22:18:38,864 even if it does not contain any `.py` files. 2024-02-16T22:18:38,865 On the other hand, currently there is no concept of package data 2024-02-16T22:18:38,865 directory, all directories are treated like packages. 2024-02-16T22:18:38,866 ******************************************************************************** 2024-02-16T22:18:38,866 !! 2024-02-16T22:18:38,867 check.warn(importable) 2024-02-16T22:18:38,867 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'SigProfilerAssignment.data.Reference_Signatures.mm9' is absent from the `packages` configuration. 2024-02-16T22:18:38,868 !! 2024-02-16T22:18:38,869 ******************************************************************************** 2024-02-16T22:18:38,869 ############################ 2024-02-16T22:18:38,870 # Package would be ignored # 2024-02-16T22:18:38,870 ############################ 2024-02-16T22:18:38,871 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.mm9' as an importable package[^1], 2024-02-16T22:18:38,872 but it is absent from setuptools' `packages` configuration. 2024-02-16T22:18:38,872 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-16T22:18:38,873 package, please make sure that 'SigProfilerAssignment.data.Reference_Signatures.mm9' is explicitly added 2024-02-16T22:18:38,873 to the `packages` configuration field. 2024-02-16T22:18:38,874 Alternatively, you can also rely on setuptools' discovery methods 2024-02-16T22:18:38,875 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-16T22:18:38,875 instead of `find_packages(...)`/`find:`). 2024-02-16T22:18:38,876 You can read more about "package discovery" on setuptools documentation page: 2024-02-16T22:18:38,877 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-16T22:18:38,878 If you don't want 'SigProfilerAssignment.data.Reference_Signatures.mm9' to be distributed and are 2024-02-16T22:18:38,879 already explicitly excluding 'SigProfilerAssignment.data.Reference_Signatures.mm9' via 2024-02-16T22:18:38,879 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-16T22:18:38,880 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-16T22:18:38,880 combination with a more fine grained `package-data` configuration. 2024-02-16T22:18:38,881 You can read more about "package data files" on setuptools documentation page: 2024-02-16T22:18:38,882 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-16T22:18:38,884 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-16T22:18:38,884 even if it does not contain any `.py` files. 2024-02-16T22:18:38,885 On the other hand, currently there is no concept of package data 2024-02-16T22:18:38,886 directory, all directories are treated like packages. 2024-02-16T22:18:38,886 ******************************************************************************** 2024-02-16T22:18:38,888 !! 2024-02-16T22:18:38,888 check.warn(importable) 2024-02-16T22:18:38,889 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'SigProfilerAssignment.data.Reference_Signatures.rn6' is absent from the `packages` configuration. 2024-02-16T22:18:38,889 !! 2024-02-16T22:18:38,892 ******************************************************************************** 2024-02-16T22:18:38,892 ############################ 2024-02-16T22:18:38,893 # Package would be ignored # 2024-02-16T22:18:38,893 ############################ 2024-02-16T22:18:38,894 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.rn6' as an importable package[^1], 2024-02-16T22:18:38,894 but it is absent from setuptools' `packages` configuration. 2024-02-16T22:18:38,897 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-16T22:18:38,898 package, please make sure that 'SigProfilerAssignment.data.Reference_Signatures.rn6' is explicitly added 2024-02-16T22:18:38,899 to the `packages` configuration field. 2024-02-16T22:18:38,900 Alternatively, you can also rely on setuptools' discovery methods 2024-02-16T22:18:38,900 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-16T22:18:38,901 instead of `find_packages(...)`/`find:`). 2024-02-16T22:18:38,902 You can read more about "package discovery" on setuptools documentation page: 2024-02-16T22:18:38,903 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-16T22:18:38,904 If you don't want 'SigProfilerAssignment.data.Reference_Signatures.rn6' to be distributed and are 2024-02-16T22:18:38,904 already explicitly excluding 'SigProfilerAssignment.data.Reference_Signatures.rn6' via 2024-02-16T22:18:38,905 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-16T22:18:38,905 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-16T22:18:38,906 combination with a more fine grained `package-data` configuration. 2024-02-16T22:18:38,907 You can read more about "package data files" on setuptools documentation page: 2024-02-16T22:18:38,908 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-16T22:18:38,910 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-16T22:18:38,910 even if it does not contain any `.py` files. 2024-02-16T22:18:38,910 On the other hand, currently there is no concept of package data 2024-02-16T22:18:38,911 directory, all directories are treated like packages. 2024-02-16T22:18:38,911 ******************************************************************************** 2024-02-16T22:18:38,912 !! 2024-02-16T22:18:38,913 check.warn(importable) 2024-02-16T22:18:38,914 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'SigProfilerAssignment.data.tests.cnv_input' is absent from the `packages` configuration. 2024-02-16T22:18:38,914 !! 2024-02-16T22:18:38,915 ******************************************************************************** 2024-02-16T22:18:38,916 ############################ 2024-02-16T22:18:38,916 # Package would be ignored # 2024-02-16T22:18:38,917 ############################ 2024-02-16T22:18:38,917 Python recognizes 'SigProfilerAssignment.data.tests.cnv_input' as an importable package[^1], 2024-02-16T22:18:38,918 but it is absent from setuptools' `packages` configuration. 2024-02-16T22:18:38,919 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-16T22:18:38,919 package, please make sure that 'SigProfilerAssignment.data.tests.cnv_input' is explicitly added 2024-02-16T22:18:38,920 to the `packages` configuration field. 2024-02-16T22:18:38,921 Alternatively, you can also rely on setuptools' discovery methods 2024-02-16T22:18:38,921 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-16T22:18:38,922 instead of `find_packages(...)`/`find:`). 2024-02-16T22:18:38,923 You can read more about "package discovery" on setuptools documentation page: 2024-02-16T22:18:38,924 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-16T22:18:38,925 If you don't want 'SigProfilerAssignment.data.tests.cnv_input' to be distributed and are 2024-02-16T22:18:38,925 already explicitly excluding 'SigProfilerAssignment.data.tests.cnv_input' via 2024-02-16T22:18:38,925 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-16T22:18:38,926 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-16T22:18:38,926 combination with a more fine grained `package-data` configuration. 2024-02-16T22:18:38,927 You can read more about "package data files" on setuptools documentation page: 2024-02-16T22:18:38,928 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-16T22:18:38,929 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-16T22:18:38,930 even if it does not contain any `.py` files. 2024-02-16T22:18:38,930 On the other hand, currently there is no concept of package data 2024-02-16T22:18:38,931 directory, all directories are treated like packages. 2024-02-16T22:18:38,931 ******************************************************************************** 2024-02-16T22:18:38,932 !! 2024-02-16T22:18:38,933 check.warn(importable) 2024-02-16T22:18:38,933 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'SigProfilerAssignment.data.tests.txt_input' is absent from the `packages` configuration. 2024-02-16T22:18:38,934 !! 2024-02-16T22:18:38,935 ******************************************************************************** 2024-02-16T22:18:38,935 ############################ 2024-02-16T22:18:38,936 # Package would be ignored # 2024-02-16T22:18:38,936 ############################ 2024-02-16T22:18:38,937 Python recognizes 'SigProfilerAssignment.data.tests.txt_input' as an importable package[^1], 2024-02-16T22:18:38,937 but it is absent from setuptools' `packages` configuration. 2024-02-16T22:18:38,938 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-16T22:18:38,939 package, please make sure that 'SigProfilerAssignment.data.tests.txt_input' is explicitly added 2024-02-16T22:18:38,939 to the `packages` configuration field. 2024-02-16T22:18:38,940 Alternatively, you can also rely on setuptools' discovery methods 2024-02-16T22:18:38,941 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-16T22:18:38,942 instead of `find_packages(...)`/`find:`). 2024-02-16T22:18:38,943 You can read more about "package discovery" on setuptools documentation page: 2024-02-16T22:18:38,944 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-16T22:18:38,945 If you don't want 'SigProfilerAssignment.data.tests.txt_input' to be distributed and are 2024-02-16T22:18:38,945 already explicitly excluding 'SigProfilerAssignment.data.tests.txt_input' via 2024-02-16T22:18:38,946 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-16T22:18:38,946 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-16T22:18:38,947 combination with a more fine grained `package-data` configuration. 2024-02-16T22:18:38,948 You can read more about "package data files" on setuptools documentation page: 2024-02-16T22:18:38,949 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-16T22:18:38,951 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-16T22:18:38,951 even if it does not contain any `.py` files. 2024-02-16T22:18:38,951 On the other hand, currently there is no concept of package data 2024-02-16T22:18:38,952 directory, all directories are treated like packages. 2024-02-16T22:18:38,952 ******************************************************************************** 2024-02-16T22:18:38,953 !! 2024-02-16T22:18:38,954 check.warn(importable) 2024-02-16T22:18:38,954 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'SigProfilerAssignment.data.tests.vcf_input' is absent from the `packages` configuration. 2024-02-16T22:18:38,954 !! 2024-02-16T22:18:38,955 ******************************************************************************** 2024-02-16T22:18:38,956 ############################ 2024-02-16T22:18:38,956 # Package would be ignored # 2024-02-16T22:18:38,957 ############################ 2024-02-16T22:18:38,957 Python recognizes 'SigProfilerAssignment.data.tests.vcf_input' as an importable package[^1], 2024-02-16T22:18:38,958 but it is absent from setuptools' `packages` configuration. 2024-02-16T22:18:38,959 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-16T22:18:38,959 package, please make sure that 'SigProfilerAssignment.data.tests.vcf_input' is explicitly added 2024-02-16T22:18:38,960 to the `packages` configuration field. 2024-02-16T22:18:38,961 Alternatively, you can also rely on setuptools' discovery methods 2024-02-16T22:18:38,961 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-16T22:18:38,962 instead of `find_packages(...)`/`find:`). 2024-02-16T22:18:38,963 You can read more about "package discovery" on setuptools documentation page: 2024-02-16T22:18:38,964 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-16T22:18:38,965 If you don't want 'SigProfilerAssignment.data.tests.vcf_input' to be distributed and are 2024-02-16T22:18:38,966 already explicitly excluding 'SigProfilerAssignment.data.tests.vcf_input' via 2024-02-16T22:18:38,966 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-16T22:18:38,967 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-16T22:18:38,967 combination with a more fine grained `package-data` configuration. 2024-02-16T22:18:38,968 You can read more about "package data files" on setuptools documentation page: 2024-02-16T22:18:38,969 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-16T22:18:38,971 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-16T22:18:38,972 even if it does not contain any `.py` files. 2024-02-16T22:18:38,972 On the other hand, currently there is no concept of package data 2024-02-16T22:18:38,973 directory, all directories are treated like packages. 2024-02-16T22:18:38,974 ******************************************************************************** 2024-02-16T22:18:38,975 !! 2024-02-16T22:18:38,975 check.warn(importable) 2024-02-16T22:18:38,976 creating build/lib/SigProfilerAssignment/DecompositionPlots 2024-02-16T22:18:38,976 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2024-02-16T22:18:38,977 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_CNV48.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2024-02-16T22:18:38,978 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_DBS78.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2024-02-16T22:18:38,978 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_ID83.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2024-02-16T22:18:38,979 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS1536.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2024-02-16T22:18:38,979 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS288.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2024-02-16T22:18:38,980 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS96.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2024-02-16T22:18:38,980 copying SigProfilerAssignment/DecompositionPlots/SigProfilerPlottingMatrix.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2024-02-16T22:18:38,981 creating build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2024-02-16T22:18:38,981 copying SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Accolade_fermante.png -> build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2024-02-16T22:18:38,982 copying SigProfilerAssignment/DecompositionPlots/ReferenceFiles/CREDIT.md -> build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2024-02-16T22:18:38,982 creating build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts 2024-02-16T22:18:38,982 copying SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts/Arial Bold.ttf -> build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts 2024-02-16T22:18:38,983 creating build/lib/SigProfilerAssignment/data 2024-02-16T22:18:38,984 copying SigProfilerAssignment/data/21_breast_WGS_substitutions.mat -> build/lib/SigProfilerAssignment/data 2024-02-16T22:18:38,984 copying SigProfilerAssignment/data/CNV_features.tsv -> build/lib/SigProfilerAssignment/data 2024-02-16T22:18:38,985 copying SigProfilerAssignment/data/CNV_signatures.txt -> build/lib/SigProfilerAssignment/data 2024-02-16T22:18:38,985 copying SigProfilerAssignment/data/CN_classes_dictionary.txt -> build/lib/SigProfilerAssignment/data 2024-02-16T22:18:38,986 copying SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx -> build/lib/SigProfilerAssignment/data 2024-02-16T22:18:38,986 copying SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx -> build/lib/SigProfilerAssignment/data 2024-02-16T22:18:38,987 copying SigProfilerAssignment/data/Samples.txt -> build/lib/SigProfilerAssignment/data 2024-02-16T22:18:38,987 copying SigProfilerAssignment/data/csvexample.csv -> build/lib/SigProfilerAssignment/data 2024-02-16T22:18:38,988 copying SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv -> build/lib/SigProfilerAssignment/data 2024-02-16T22:18:38,988 copying SigProfilerAssignment/data/sigProfiler_ID_signatures.csv -> build/lib/SigProfilerAssignment/data 2024-02-16T22:18:38,989 copying SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv -> build/lib/SigProfilerAssignment/data 2024-02-16T22:18:38,989 creating build/lib/SigProfilerAssignment/data/Reference_Signatures 2024-02-16T22:18:38,990 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:38,990 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:38,991 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:38,992 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:38,992 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:38,993 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:38,993 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:38,994 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:38,994 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:38,994 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:38,995 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:38,995 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:38,996 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:38,996 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:38,997 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:38,997 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:38,998 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:38,999 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:38,999 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:39,000 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:39,000 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:39,001 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:39,001 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_CN_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:39,002 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:39,002 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:39,003 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:39,003 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:39,004 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:39,004 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:39,005 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:39,005 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:39,006 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:39,006 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:39,007 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,007 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,008 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,008 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,009 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,009 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,010 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,010 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,011 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,012 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,012 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,015 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,021 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,025 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,028 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,030 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,035 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,040 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,043 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,046 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,052 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,057 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SV_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,059 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,062 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,065 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,069 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,074 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,075 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,078 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,081 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,085 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,088 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,091 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,094 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,099 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,103 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,106 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,108 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,113 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,117 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,120 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,123 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,127 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,132 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,135 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,138 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,143 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,149 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,152 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,155 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,160 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,166 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:39,167 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:39,170 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:39,173 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:39,176 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:39,179 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:39,182 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:39,185 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:39,189 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:39,194 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:39,197 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:39,200 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:39,204 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:39,210 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:39,213 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:39,216 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:39,220 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:39,225 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:39,228 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:39,230 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:39,235 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:39,242 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:39,245 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:39,248 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:39,254 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:39,259 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,260 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,264 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,268 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,271 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,275 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,278 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,281 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,287 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,293 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,296 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,299 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,305 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,311 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,314 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,317 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,323 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,329 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,333 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,336 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,343 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,349 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,352 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,356 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,360 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,364 creating build/lib/SigProfilerAssignment/data/tests 2024-02-16T22:18:39,365 creating build/lib/SigProfilerAssignment/data/tests/cnv_input 2024-02-16T22:18:39,366 copying SigProfilerAssignment/data/tests/cnv_input/all.breast.ascat.summary.sample.tsv -> build/lib/SigProfilerAssignment/data/tests/cnv_input 2024-02-16T22:18:39,374 creating build/lib/SigProfilerAssignment/data/tests/txt_input 2024-02-16T22:18:39,375 copying SigProfilerAssignment/data/tests/txt_input/CNV48_S3_Signatures.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2024-02-16T22:18:39,377 copying SigProfilerAssignment/data/tests/txt_input/DBS78_S3_Signatures.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2024-02-16T22:18:39,379 copying SigProfilerAssignment/data/tests/txt_input/ID83_S3_Signatures.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2024-02-16T22:18:39,382 copying SigProfilerAssignment/data/tests/txt_input/SBS96_S3_Signatures.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2024-02-16T22:18:39,384 copying SigProfilerAssignment/data/tests/txt_input/SV32_S3_Signatures.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2024-02-16T22:18:39,386 copying SigProfilerAssignment/data/tests/txt_input/sample_matrix_CNV48.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2024-02-16T22:18:39,389 copying SigProfilerAssignment/data/tests/txt_input/sample_matrix_DBS.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2024-02-16T22:18:39,394 copying SigProfilerAssignment/data/tests/txt_input/sample_matrix_ID.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2024-02-16T22:18:39,395 copying SigProfilerAssignment/data/tests/txt_input/sample_matrix_SBS.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2024-02-16T22:18:39,397 copying SigProfilerAssignment/data/tests/txt_input/sample_matrix_SV32.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2024-02-16T22:18:39,399 creating build/lib/SigProfilerAssignment/data/tests/vcf_input 2024-02-16T22:18:39,400 copying SigProfilerAssignment/data/tests/vcf_input/PD3851a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2024-02-16T22:18:39,403 copying SigProfilerAssignment/data/tests/vcf_input/PD3890a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2024-02-16T22:18:39,407 copying SigProfilerAssignment/data/tests/vcf_input/PD3904a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2024-02-16T22:18:39,412 copying SigProfilerAssignment/data/tests/vcf_input/PD3945a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2024-02-16T22:18:39,417 copying SigProfilerAssignment/data/tests/vcf_input/PD4005a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2024-02-16T22:18:39,446 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-02-16T22:18:39,446 !! 2024-02-16T22:18:39,447 ******************************************************************************** 2024-02-16T22:18:39,448 Please avoid running ``setup.py`` directly. 2024-02-16T22:18:39,448 Instead, use pypa/build, pypa/installer or other 2024-02-16T22:18:39,449 standards-based tools. 2024-02-16T22:18:39,450 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-02-16T22:18:39,451 ******************************************************************************** 2024-02-16T22:18:39,452 !! 2024-02-16T22:18:39,452 self.initialize_options() 2024-02-16T22:18:39,470 installing to build/bdist.linux-armv7l/wheel 2024-02-16T22:18:39,471 running install 2024-02-16T22:18:39,495 running install_lib 2024-02-16T22:18:39,531 creating build/bdist.linux-armv7l 2024-02-16T22:18:39,531 creating build/bdist.linux-armv7l/wheel 2024-02-16T22:18:39,533 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2024-02-16T22:18:39,534 copying build/lib/SigProfilerAssignment/single_sample.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2024-02-16T22:18:39,538 copying build/lib/SigProfilerAssignment/version.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2024-02-16T22:18:39,541 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2024-02-16T22:18:39,542 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_DBS78.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2024-02-16T22:18:39,545 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2024-02-16T22:18:39,549 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2024-02-16T22:18:39,551 copying build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Accolade_fermante.png -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2024-02-16T22:18:39,554 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts 2024-02-16T22:18:39,555 copying build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts/Arial Bold.ttf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts 2024-02-16T22:18:39,579 copying build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/CREDIT.md -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2024-02-16T22:18:39,581 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS96.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2024-02-16T22:18:39,585 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS288.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2024-02-16T22:18:39,588 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_ID83.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2024-02-16T22:18:39,591 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS1536.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2024-02-16T22:18:39,594 copying build/lib/SigProfilerAssignment/DecompositionPlots/SigProfilerPlottingMatrix.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2024-02-16T22:18:39,602 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_CNV48.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2024-02-16T22:18:39,606 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2024-02-16T22:18:39,607 copying build/lib/SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2024-02-16T22:18:39,610 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests 2024-02-16T22:18:39,612 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2024-02-16T22:18:39,613 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3851a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2024-02-16T22:18:39,617 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3904a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2024-02-16T22:18:39,622 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD4005a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2024-02-16T22:18:39,629 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3890a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2024-02-16T22:18:39,635 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3945a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2024-02-16T22:18:39,645 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2024-02-16T22:18:39,646 copying build/lib/SigProfilerAssignment/data/tests/txt_input/sample_matrix_SV32.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2024-02-16T22:18:39,649 copying build/lib/SigProfilerAssignment/data/tests/txt_input/SBS96_S3_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2024-02-16T22:18:39,652 copying build/lib/SigProfilerAssignment/data/tests/txt_input/CNV48_S3_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2024-02-16T22:18:39,654 copying build/lib/SigProfilerAssignment/data/tests/txt_input/sample_matrix_ID.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2024-02-16T22:18:39,657 copying build/lib/SigProfilerAssignment/data/tests/txt_input/SV32_S3_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2024-02-16T22:18:39,660 copying build/lib/SigProfilerAssignment/data/tests/txt_input/DBS78_S3_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2024-02-16T22:18:39,663 copying build/lib/SigProfilerAssignment/data/tests/txt_input/ID83_S3_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2024-02-16T22:18:39,666 copying build/lib/SigProfilerAssignment/data/tests/txt_input/sample_matrix_DBS.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2024-02-16T22:18:39,669 copying build/lib/SigProfilerAssignment/data/tests/txt_input/sample_matrix_CNV48.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2024-02-16T22:18:39,672 copying build/lib/SigProfilerAssignment/data/tests/txt_input/sample_matrix_SBS.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2024-02-16T22:18:39,675 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/cnv_input 2024-02-16T22:18:39,676 copying build/lib/SigProfilerAssignment/data/tests/cnv_input/all.breast.ascat.summary.sample.tsv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/cnv_input 2024-02-16T22:18:39,688 copying build/lib/SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2024-02-16T22:18:39,699 copying build/lib/SigProfilerAssignment/data/21_breast_WGS_substitutions.mat -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2024-02-16T22:18:39,701 copying build/lib/SigProfilerAssignment/data/csvexample.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2024-02-16T22:18:39,703 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures 2024-02-16T22:18:39,706 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,707 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,712 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,715 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,721 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,726 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,732 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,735 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,738 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,740 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,745 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,750 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,754 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,757 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,763 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,768 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,773 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,779 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,782 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,785 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,788 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,792 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,795 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,798 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,801 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2024-02-16T22:18:39,804 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,805 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,808 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,813 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,816 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,821 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,823 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,825 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,828 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,833 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,836 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,839 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,841 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,846 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,849 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,851 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,856 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,860 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,865 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,869 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,873 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,876 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,878 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,881 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,887 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2024-02-16T22:18:39,890 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,891 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,895 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,898 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,902 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,905 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,909 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,912 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,914 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,917 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,920 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,924 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,929 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SV_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,931 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,934 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,936 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,939 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,944 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,949 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,954 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,956 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,959 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,962 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,966 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,972 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,975 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2024-02-16T22:18:39,978 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:39,979 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:39,985 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:39,988 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:39,991 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:39,994 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:39,998 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:40,003 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:40,007 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:40,011 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:40,014 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:40,019 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:40,023 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:40,026 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:40,028 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:40,031 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:40,034 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:40,039 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:40,041 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:40,044 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:40,047 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:40,050 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:40,053 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:40,059 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:40,065 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2024-02-16T22:18:40,069 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:40,070 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:40,075 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:40,080 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:40,082 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:40,088 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:40,093 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:40,097 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:40,100 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:40,103 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:40,106 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:40,109 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:40,114 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:40,117 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:40,120 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:40,125 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:40,128 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_CN_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:40,130 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:40,136 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:40,139 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:40,142 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:40,148 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:40,151 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:40,157 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:40,160 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:40,162 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:40,165 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:40,169 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:40,171 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:40,175 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:40,178 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:40,181 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:40,186 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2024-02-16T22:18:40,192 copying build/lib/SigProfilerAssignment/data/CNV_features.tsv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2024-02-16T22:18:40,194 copying build/lib/SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2024-02-16T22:18:40,200 copying build/lib/SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2024-02-16T22:18:40,203 copying build/lib/SigProfilerAssignment/data/CNV_signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2024-02-16T22:18:40,207 copying build/lib/SigProfilerAssignment/data/CN_classes_dictionary.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2024-02-16T22:18:40,209 copying build/lib/SigProfilerAssignment/data/sigProfiler_ID_signatures.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2024-02-16T22:18:40,212 copying build/lib/SigProfilerAssignment/data/Samples.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2024-02-16T22:18:40,214 copying build/lib/SigProfilerAssignment/__init__.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2024-02-16T22:18:40,216 copying build/lib/SigProfilerAssignment/decompose_subroutines.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2024-02-16T22:18:40,220 copying build/lib/SigProfilerAssignment/Analyzer.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2024-02-16T22:18:40,223 copying build/lib/SigProfilerAssignment/decomposition.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2024-02-16T22:18:40,226 running install_egg_info 2024-02-16T22:18:40,257 Copying SigProfilerAssignment.egg-info to build/bdist.linux-armv7l/wheel/SigProfilerAssignment-0.1.3-py3.11.egg-info 2024-02-16T22:18:40,269 running install_scripts 2024-02-16T22:18:40,288 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment-0.1.3.dist-info/WHEEL 2024-02-16T22:18:40,290 creating '/tmp/pip-wheel-mvbozt5d/SigProfilerAssignment-0.1.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-02-16T22:18:40,293 adding 'SigProfilerAssignment/Analyzer.py' 2024-02-16T22:18:40,295 adding 'SigProfilerAssignment/__init__.py' 2024-02-16T22:18:40,301 adding 'SigProfilerAssignment/decompose_subroutines.py' 2024-02-16T22:18:40,306 adding 'SigProfilerAssignment/decomposition.py' 2024-02-16T22:18:40,310 adding 'SigProfilerAssignment/single_sample.py' 2024-02-16T22:18:40,312 adding 'SigProfilerAssignment/version.py' 2024-02-16T22:18:40,316 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition.py' 2024-02-16T22:18:40,320 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_CNV48.py' 2024-02-16T22:18:40,322 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_DBS78.py' 2024-02-16T22:18:40,325 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_ID83.py' 2024-02-16T22:18:40,329 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS1536.py' 2024-02-16T22:18:40,331 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS288.py' 2024-02-16T22:18:40,334 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS96.py' 2024-02-16T22:18:40,350 adding 'SigProfilerAssignment/DecompositionPlots/SigProfilerPlottingMatrix.py' 2024-02-16T22:18:40,355 adding 'SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Accolade_fermante.png' 2024-02-16T22:18:40,356 adding 'SigProfilerAssignment/DecompositionPlots/ReferenceFiles/CREDIT.md' 2024-02-16T22:18:40,463 adding 'SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts/Arial Bold.ttf' 2024-02-16T22:18:40,471 adding 'SigProfilerAssignment/data/21_breast_WGS_substitutions.mat' 2024-02-16T22:18:40,472 adding 'SigProfilerAssignment/data/CNV_features.tsv' 2024-02-16T22:18:40,476 adding 'SigProfilerAssignment/data/CNV_signatures.txt' 2024-02-16T22:18:40,478 adding 'SigProfilerAssignment/data/CN_classes_dictionary.txt' 2024-02-16T22:18:40,493 adding 'SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx' 2024-02-16T22:18:40,535 adding 'SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx' 2024-02-16T22:18:40,540 adding 'SigProfilerAssignment/data/Samples.txt' 2024-02-16T22:18:40,542 adding 'SigProfilerAssignment/data/csvexample.csv' 2024-02-16T22:18:40,544 adding 'SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv' 2024-02-16T22:18:40,548 adding 'SigProfilerAssignment/data/sigProfiler_ID_signatures.csv' 2024-02-16T22:18:40,562 adding 'SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv' 2024-02-16T22:18:40,568 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt' 2024-02-16T22:18:40,577 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37_exome.txt' 2024-02-16T22:18:40,586 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt' 2024-02-16T22:18:40,598 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37_exome.txt' 2024-02-16T22:18:40,602 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt' 2024-02-16T22:18:40,605 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37_exome.txt' 2024-02-16T22:18:40,611 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt' 2024-02-16T22:18:40,645 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt' 2024-02-16T22:18:40,679 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37_exome.txt' 2024-02-16T22:18:40,684 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt' 2024-02-16T22:18:40,687 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37_exome.txt' 2024-02-16T22:18:40,693 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt' 2024-02-16T22:18:40,715 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt' 2024-02-16T22:18:40,752 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt' 2024-02-16T22:18:40,789 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37_exome.txt' 2024-02-16T22:18:40,794 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt' 2024-02-16T22:18:40,797 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt' 2024-02-16T22:18:40,801 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37_exome.txt' 2024-02-16T22:18:40,807 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt' 2024-02-16T22:18:40,844 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt' 2024-02-16T22:18:40,882 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37_exome.txt' 2024-02-16T22:18:40,886 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_CN_GRCh37.txt' 2024-02-16T22:18:40,890 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_DBS_GRCh37.txt' 2024-02-16T22:18:40,896 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_DBS_GRCh37_exome.txt' 2024-02-16T22:18:40,900 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_ID_GRCh37.txt' 2024-02-16T22:18:40,920 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_SBS_GRCh37.txt' 2024-02-16T22:18:40,962 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_SBS_GRCh37_exome.txt' 2024-02-16T22:18:40,966 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt' 2024-02-16T22:18:40,970 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37_exome.txt' 2024-02-16T22:18:40,975 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt' 2024-02-16T22:18:41,006 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt' 2024-02-16T22:18:41,038 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37_exome.txt' 2024-02-16T22:18:41,049 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt' 2024-02-16T22:18:41,057 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38_exome.txt' 2024-02-16T22:18:41,070 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt' 2024-02-16T22:18:41,082 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38_exome.txt' 2024-02-16T22:18:41,086 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt' 2024-02-16T22:18:41,090 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38_exome.txt' 2024-02-16T22:18:41,124 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt' 2024-02-16T22:18:41,158 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38_exome.txt' 2024-02-16T22:18:41,162 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt' 2024-02-16T22:18:41,166 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38_exome.txt' 2024-02-16T22:18:41,203 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt' 2024-02-16T22:18:41,240 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38_exome.txt' 2024-02-16T22:18:41,245 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt' 2024-02-16T22:18:41,248 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38_exome.txt' 2024-02-16T22:18:41,285 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt' 2024-02-16T22:18:41,324 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38_exome.txt' 2024-02-16T22:18:41,332 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_DBS_GRCh38.txt' 2024-02-16T22:18:41,338 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_DBS_GRCh38_exome.txt' 2024-02-16T22:18:41,383 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SBS_GRCh38.txt' 2024-02-16T22:18:41,425 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SBS_GRCh38_exome.txt' 2024-02-16T22:18:41,427 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SV_GRCh38.txt' 2024-02-16T22:18:41,430 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt' 2024-02-16T22:18:41,434 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38_exome.txt' 2024-02-16T22:18:41,465 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt' 2024-02-16T22:18:41,498 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38_exome.txt' 2024-02-16T22:18:41,507 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt' 2024-02-16T22:18:41,516 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10_exome.txt' 2024-02-16T22:18:41,528 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt' 2024-02-16T22:18:41,541 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10_exome.txt' 2024-02-16T22:18:41,544 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt' 2024-02-16T22:18:41,548 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10_exome.txt' 2024-02-16T22:18:41,582 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt' 2024-02-16T22:18:41,617 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10_exome.txt' 2024-02-16T22:18:41,621 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt' 2024-02-16T22:18:41,624 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10_exome.txt' 2024-02-16T22:18:41,661 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt' 2024-02-16T22:18:41,699 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10_exome.txt' 2024-02-16T22:18:41,703 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt' 2024-02-16T22:18:41,706 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10_exome.txt' 2024-02-16T22:18:41,744 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt' 2024-02-16T22:18:41,782 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10_exome.txt' 2024-02-16T22:18:41,790 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_DBS_mm10.txt' 2024-02-16T22:18:41,796 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_DBS_mm10_exome.txt' 2024-02-16T22:18:41,841 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_SBS_mm10.txt' 2024-02-16T22:18:41,883 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_SBS_mm10_exome.txt' 2024-02-16T22:18:41,888 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt' 2024-02-16T22:18:41,891 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10_exome.txt' 2024-02-16T22:18:41,923 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt' 2024-02-16T22:18:41,955 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10_exome.txt' 2024-02-16T22:18:41,965 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt' 2024-02-16T22:18:41,973 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9_exome.txt' 2024-02-16T22:18:41,986 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt' 2024-02-16T22:18:41,998 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9_exome.txt' 2024-02-16T22:18:42,002 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt' 2024-02-16T22:18:42,005 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9_exome.txt' 2024-02-16T22:18:42,039 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt' 2024-02-16T22:18:42,074 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9_exome.txt' 2024-02-16T22:18:42,078 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt' 2024-02-16T22:18:42,082 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9_exome.txt' 2024-02-16T22:18:42,120 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9.txt' 2024-02-16T22:18:42,158 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9_exome.txt' 2024-02-16T22:18:42,162 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9.txt' 2024-02-16T22:18:42,166 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9_exome.txt' 2024-02-16T22:18:42,203 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9.txt' 2024-02-16T22:18:42,242 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9_exome.txt' 2024-02-16T22:18:42,250 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_DBS_mm9.txt' 2024-02-16T22:18:42,256 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_DBS_mm9_exome.txt' 2024-02-16T22:18:42,301 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_SBS_mm9.txt' 2024-02-16T22:18:42,343 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_SBS_mm9_exome.txt' 2024-02-16T22:18:42,348 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9.txt' 2024-02-16T22:18:42,351 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9_exome.txt' 2024-02-16T22:18:42,382 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9.txt' 2024-02-16T22:18:42,414 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9_exome.txt' 2024-02-16T22:18:42,424 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6.txt' 2024-02-16T22:18:42,433 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6_exome.txt' 2024-02-16T22:18:42,445 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6.txt' 2024-02-16T22:18:42,457 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6_exome.txt' 2024-02-16T22:18:42,461 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6.txt' 2024-02-16T22:18:42,464 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6_exome.txt' 2024-02-16T22:18:42,498 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6.txt' 2024-02-16T22:18:42,533 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6_exome.txt' 2024-02-16T22:18:42,537 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6.txt' 2024-02-16T22:18:42,541 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6_exome.txt' 2024-02-16T22:18:42,577 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6.txt' 2024-02-16T22:18:42,615 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6_exome.txt' 2024-02-16T22:18:42,619 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6.txt' 2024-02-16T22:18:42,623 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6_exome.txt' 2024-02-16T22:18:42,661 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6.txt' 2024-02-16T22:18:42,699 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6_exome.txt' 2024-02-16T22:18:42,707 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_DBS_rn6.txt' 2024-02-16T22:18:42,713 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_DBS_rn6_exome.txt' 2024-02-16T22:18:42,758 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_SBS_rn6.txt' 2024-02-16T22:18:42,800 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_SBS_rn6_exome.txt' 2024-02-16T22:18:42,804 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6.txt' 2024-02-16T22:18:42,808 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6_exome.txt' 2024-02-16T22:18:42,839 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6.txt' 2024-02-16T22:18:42,872 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6_exome.txt' 2024-02-16T22:18:42,937 adding 'SigProfilerAssignment/data/tests/cnv_input/all.breast.ascat.summary.sample.tsv' 2024-02-16T22:18:42,941 adding 'SigProfilerAssignment/data/tests/txt_input/CNV48_S3_Signatures.txt' 2024-02-16T22:18:42,943 adding 'SigProfilerAssignment/data/tests/txt_input/DBS78_S3_Signatures.txt' 2024-02-16T22:18:42,945 adding 'SigProfilerAssignment/data/tests/txt_input/ID83_S3_Signatures.txt' 2024-02-16T22:18:42,946 adding 'SigProfilerAssignment/data/tests/txt_input/SBS96_S3_Signatures.txt' 2024-02-16T22:18:42,948 adding 'SigProfilerAssignment/data/tests/txt_input/SV32_S3_Signatures.txt' 2024-02-16T22:18:42,950 adding 'SigProfilerAssignment/data/tests/txt_input/sample_matrix_CNV48.txt' 2024-02-16T22:18:42,951 adding 'SigProfilerAssignment/data/tests/txt_input/sample_matrix_DBS.txt' 2024-02-16T22:18:42,953 adding 'SigProfilerAssignment/data/tests/txt_input/sample_matrix_ID.txt' 2024-02-16T22:18:42,954 adding 'SigProfilerAssignment/data/tests/txt_input/sample_matrix_SBS.txt' 2024-02-16T22:18:42,955 adding 'SigProfilerAssignment/data/tests/txt_input/sample_matrix_SV32.txt' 2024-02-16T22:18:42,962 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3851a.vcf' 2024-02-16T22:18:42,982 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3890a.vcf' 2024-02-16T22:18:43,000 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3904a.vcf' 2024-02-16T22:18:43,033 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3945a.vcf' 2024-02-16T22:18:43,054 adding 'SigProfilerAssignment/data/tests/vcf_input/PD4005a.vcf' 2024-02-16T22:18:43,057 adding 'SigProfilerAssignment-0.1.3.dist-info/LICENSE.txt' 2024-02-16T22:18:43,059 adding 'SigProfilerAssignment-0.1.3.dist-info/METADATA' 2024-02-16T22:18:43,060 adding 'SigProfilerAssignment-0.1.3.dist-info/WHEEL' 2024-02-16T22:18:43,061 adding 'SigProfilerAssignment-0.1.3.dist-info/top_level.txt' 2024-02-16T22:18:43,064 adding 'SigProfilerAssignment-0.1.3.dist-info/RECORD' 2024-02-16T22:18:43,126 removing build/bdist.linux-armv7l/wheel 2024-02-16T22:18:43,286 Building wheel for sigprofilerassignment (setup.py): finished with status 'done' 2024-02-16T22:18:43,344 Created wheel for sigprofilerassignment: filename=SigProfilerAssignment-0.1.3-py3-none-any.whl size=5572442 sha256=5f4a941c40dcbf977bf03576f16ed0462d9426d586da48abfc6cbe1d5caa8ac1 2024-02-16T22:18:43,345 Stored in directory: /tmp/pip-ephem-wheel-cache-t2349iq4/wheels/e1/64/f8/e1792a784dc2d288278f196f46632311e40a071a86a7b96570 2024-02-16T22:18:43,363 Successfully built sigprofilerassignment 2024-02-16T22:18:43,492 Removed build tracker: '/tmp/pip-build-tracker-syspswye'