2024-02-19T11:31:22,134 Created temporary directory: /tmp/pip-build-tracker-0dl7k8jq 2024-02-19T11:31:22,135 Initialized build tracking at /tmp/pip-build-tracker-0dl7k8jq 2024-02-19T11:31:22,136 Created build tracker: /tmp/pip-build-tracker-0dl7k8jq 2024-02-19T11:31:22,136 Entered build tracker: /tmp/pip-build-tracker-0dl7k8jq 2024-02-19T11:31:22,137 Created temporary directory: /tmp/pip-wheel-_sc7efvp 2024-02-19T11:31:22,140 Created temporary directory: /tmp/pip-ephem-wheel-cache-94ok15po 2024-02-19T11:31:22,162 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-02-19T11:31:22,165 2 location(s) to search for versions of tmd: 2024-02-19T11:31:22,165 * https://pypi.org/simple/tmd/ 2024-02-19T11:31:22,165 * https://www.piwheels.org/simple/tmd/ 2024-02-19T11:31:22,166 Fetching project page and analyzing links: https://pypi.org/simple/tmd/ 2024-02-19T11:31:22,167 Getting page https://pypi.org/simple/tmd/ 2024-02-19T11:31:22,168 Found index url https://pypi.org/simple/ 2024-02-19T11:31:22,396 Fetched page https://pypi.org/simple/tmd/ as application/vnd.pypi.simple.v1+json 2024-02-19T11:31:22,400 Skipping link: No binaries permitted for tmd: https://files.pythonhosted.org/packages/fd/5b/a1a63aa7b6e7b95bad3b3fa0907a99efab29ee424833b19589e544bcd23b/tmd-2.0.2-py3-none-any.whl (from https://pypi.org/simple/tmd/) 2024-02-19T11:31:22,401 Found link https://files.pythonhosted.org/packages/4b/53/cadc69ebb8faec95f410614f59f59a87df70719d45c9601a4f2f8201fddc/tmd-2.0.2.tar.gz (from https://pypi.org/simple/tmd/), version: 2.0.2 2024-02-19T11:31:22,402 Found link https://files.pythonhosted.org/packages/0f/e6/0cb4fb27e231b5a45401bc4e115fa759d23a022f419754722f42a08f05c4/tmd-2.0.3.tar.gz (from https://pypi.org/simple/tmd/), version: 2.0.3 2024-02-19T11:31:22,402 Found link https://files.pythonhosted.org/packages/a1/6c/80e39656370baaabae4f2b6df8d5962b7dc93e367178087faabd0605c33b/tmd-2.0.4.tar.gz (from https://pypi.org/simple/tmd/), version: 2.0.4 2024-02-19T11:31:22,403 Found link https://files.pythonhosted.org/packages/30/89/2503f01f96ff60f5cec27377a7a26e692de4f55ebd18c6a7efb8e3bcc514/tmd-2.0.5.tar.gz (from https://pypi.org/simple/tmd/), version: 2.0.5 2024-02-19T11:31:22,404 Found link https://files.pythonhosted.org/packages/91/1e/963d2c6043f7ef55da341b102953116c5ac061ccd8fa982976a07e48c27c/tmd-2.0.7.tar.gz (from https://pypi.org/simple/tmd/), version: 2.0.7 2024-02-19T11:31:22,404 Found link https://files.pythonhosted.org/packages/67/bb/ce48e4704d8b58abbdcaac4a25998550424db9e9d4c6bd2d8602f1eb836c/tmd-2.0.8.tar.gz (from https://pypi.org/simple/tmd/), version: 2.0.8 2024-02-19T11:31:22,405 Found link https://files.pythonhosted.org/packages/9c/41/c0b7a54934ab412a486046088fc9c2f0598fd8886241ff0b0074839f5581/tmd-2.0.9.tar.gz (from https://pypi.org/simple/tmd/) (requires-python:>=3.6), version: 2.0.9 2024-02-19T11:31:22,406 Found link https://files.pythonhosted.org/packages/10/50/47885a6bf1a2c5fe51922093d3f25a3c61f5233bf1fdec639236c56f9433/tmd-2.0.10.tar.gz (from https://pypi.org/simple/tmd/) (requires-python:>=3.6), version: 2.0.10 2024-02-19T11:31:22,407 Found link https://files.pythonhosted.org/packages/16/d6/5ddd62f0c40e08ca14cb6680fbc10933cdaa52c5ed8aec94c296ae5f7d7e/tmd-2.0.11.tar.gz (from https://pypi.org/simple/tmd/) (requires-python:>=3.6), version: 2.0.11 2024-02-19T11:31:22,408 Found link https://files.pythonhosted.org/packages/be/4b/1139acbc36f01d626e754eee858eab1d2d2899aee017c39163a6e9040809/tmd-2.1.0.tar.gz (from https://pypi.org/simple/tmd/) (requires-python:>=3.7), version: 2.1.0 2024-02-19T11:31:22,409 Found link https://files.pythonhosted.org/packages/cd/0b/ee081c996cadf649ddfdc98322e288548473c8ab9e0ab9c32482ac3cccfe/tmd-2.2.0.tar.gz (from https://pypi.org/simple/tmd/) (requires-python:>=3.7), version: 2.2.0 2024-02-19T11:31:22,410 Skipping link: No binaries permitted for tmd: https://files.pythonhosted.org/packages/ee/ca/b5a359551f4c33a55644af6661c53becfee41462ff52536da5a86de2e7dc/TMD-2.3.0-py3-none-any.whl (from https://pypi.org/simple/tmd/) (requires-python:>=3.7) 2024-02-19T11:31:22,411 Found link https://files.pythonhosted.org/packages/56/87/05e0e85b8d7d6983c0b3f5247eba55457b88fbc224944fa95f17f558acdf/TMD-2.3.0.tar.gz (from https://pypi.org/simple/tmd/) (requires-python:>=3.7), version: 2.3.0 2024-02-19T11:31:22,412 Skipping link: No binaries permitted for tmd: https://files.pythonhosted.org/packages/c2/18/9431f0d9dab6b21c84a9cca09ba4e99e8693dcb28c8cf15ad4bbcff5d996/TMD-2.3.1-py3-none-any.whl (from https://pypi.org/simple/tmd/) (requires-python:>=3.7) 2024-02-19T11:31:22,413 Found link https://files.pythonhosted.org/packages/8b/81/884b2d755669ad63686b53d09b442a89a1e0be8b12f8611bdbb37d59a6dc/TMD-2.3.1.tar.gz (from https://pypi.org/simple/tmd/) (requires-python:>=3.7), version: 2.3.1 2024-02-19T11:31:22,414 Skipping link: No binaries permitted for tmd: https://files.pythonhosted.org/packages/c9/3b/17b15f0d3f6fd96d0bbaac192dcb96e0194361b350d2449475bcfb4a7b1b/TMD-2.4.0-py3-none-any.whl (from https://pypi.org/simple/tmd/) (requires-python:>=3.8) 2024-02-19T11:31:22,415 Found link https://files.pythonhosted.org/packages/8d/8e/492882d21f937b038224ae58ed02092836abee81235e9435c5eaf7574437/TMD-2.4.0.tar.gz (from https://pypi.org/simple/tmd/) (requires-python:>=3.8), version: 2.4.0 2024-02-19T11:31:22,415 Skipping link: No binaries permitted for tmd: https://files.pythonhosted.org/packages/65/b9/845a25c141789b3d3f96b3c13adf2857a6aa1d8b36a13648305b07682375/TMD-2.4.1-py3-none-any.whl (from https://pypi.org/simple/tmd/) (requires-python:>=3.8) 2024-02-19T11:31:22,416 Found link https://files.pythonhosted.org/packages/6d/86/b6fb7bf419b9dc090266bae2d37432b7a2ec61727544987df1bc8248510e/TMD-2.4.1.tar.gz (from https://pypi.org/simple/tmd/) (requires-python:>=3.8), version: 2.4.1 2024-02-19T11:31:22,417 Fetching project page and analyzing links: https://www.piwheels.org/simple/tmd/ 2024-02-19T11:31:22,417 Getting page https://www.piwheels.org/simple/tmd/ 2024-02-19T11:31:22,419 Found index url https://www.piwheels.org/simple/ 2024-02-19T11:31:22,611 Fetched page https://www.piwheels.org/simple/tmd/ as text/html 2024-02-19T11:31:22,615 Skipping link: No binaries permitted for tmd: https://www.piwheels.org/simple/tmd/TMD-2.4.0-py3-none-any.whl#sha256=b6f3727defbc7993445bdfad21bcc0a7988e49f5e5a157be14f87df20b9d413a (from https://www.piwheels.org/simple/tmd/) (requires-python:>=3.8) 2024-02-19T11:31:22,616 Skipping link: No binaries permitted for tmd: https://www.piwheels.org/simple/tmd/TMD-2.3.1-py3-none-any.whl#sha256=2700a80bcbc680b1ccc277c2de3a75039e527dc419eff7de04abc33e2f8f194f (from https://www.piwheels.org/simple/tmd/) (requires-python:>=3.7) 2024-02-19T11:31:22,617 Skipping link: No binaries permitted for tmd: https://www.piwheels.org/simple/tmd/TMD-2.3.0-py3-none-any.whl#sha256=eb394fa1a41a68f38d14af539f7791753349f7260b1c0b9c4373391a74c78dc7 (from https://www.piwheels.org/simple/tmd/) (requires-python:>=3.7) 2024-02-19T11:31:22,617 Skipping link: No binaries permitted for tmd: https://www.piwheels.org/simple/tmd/tmd-2.2.0-py3-none-any.whl#sha256=06c2f93b1d4a5173e74560e8a3560f76af0aa5d3c054c83a98e00df60e97bce5 (from https://www.piwheels.org/simple/tmd/) (requires-python:>=3.7) 2024-02-19T11:31:22,618 Skipping link: No binaries permitted for tmd: https://www.piwheels.org/simple/tmd/tmd-2.1.0-py3-none-any.whl#sha256=5999984ee339ab8d17ffe5d879a946f6240e1771a5ea8c0a9447820d9715b7be (from https://www.piwheels.org/simple/tmd/) (requires-python:>=3.7) 2024-02-19T11:31:22,618 Skipping link: No binaries permitted for tmd: https://www.piwheels.org/simple/tmd/tmd-2.0.11-py3-none-any.whl#sha256=8c044b084d51518e9dc1eb0bd4bc19c48f285771f7a9c1d40e8c6478c123e214 (from https://www.piwheels.org/simple/tmd/) (requires-python:>=3.6) 2024-02-19T11:31:22,619 Skipping link: No binaries permitted for tmd: https://www.piwheels.org/simple/tmd/tmd-2.0.10-py3-none-any.whl#sha256=56ee5f2fa452d3307555c60c5ba1a69adcb19366b816753db8e977d6a681a56d (from https://www.piwheels.org/simple/tmd/) (requires-python:>=3.6) 2024-02-19T11:31:22,619 Skipping link: No binaries permitted for tmd: https://www.piwheels.org/simple/tmd/tmd-2.0.9-py3-none-any.whl#sha256=3c73f98ab8c3fb6159c599fb982398d9d92d202715bf74496c1b62aba5674098 (from https://www.piwheels.org/simple/tmd/) (requires-python:>=3.6) 2024-02-19T11:31:22,620 Skipping link: No binaries permitted for tmd: https://www.piwheels.org/simple/tmd/tmd-2.0.8-py3-none-any.whl#sha256=b820da7d5e7d0bce5e4ffc1be5d40e186105c5e1734e015f0aecb06e4fd3dcc1 (from https://www.piwheels.org/simple/tmd/) 2024-02-19T11:31:22,621 Skipping link: No binaries permitted for tmd: https://www.piwheels.org/simple/tmd/tmd-2.0.7-py3-none-any.whl#sha256=49cbac09877c154f53976594898451722b47c944f239071787e185ccfef95b90 (from https://www.piwheels.org/simple/tmd/) 2024-02-19T11:31:22,622 Skipping link: No binaries permitted for tmd: https://www.piwheels.org/simple/tmd/tmd-2.0.5-py3-none-any.whl#sha256=d05450512e43cd3a4690a8e101ebc0e13d8633f48618ffe981989446d98aad1f (from https://www.piwheels.org/simple/tmd/) 2024-02-19T11:31:22,622 Skipping link: No binaries permitted for tmd: https://www.piwheels.org/simple/tmd/tmd-2.0.4-py3-none-any.whl#sha256=c484fb645737cbfb12ff974bb6b2447cab30b6136ed8838a3a6f8e6c9eb29764 (from https://www.piwheels.org/simple/tmd/) 2024-02-19T11:31:22,623 Skipping link: No binaries permitted for tmd: https://www.piwheels.org/simple/tmd/tmd-2.0.3-py3-none-any.whl#sha256=99c82dad9accbbf6f39b6499713056af266660c0fa3917df2bbd9bdb4dcf387c (from https://www.piwheels.org/simple/tmd/) 2024-02-19T11:31:22,623 Skipping link: No binaries permitted for tmd: https://www.piwheels.org/simple/tmd/tmd-2.0.2-py3-none-any.whl#sha256=fd913c48c639dcc3bec04e737d6922673d2110fb66375d50e289d146ccd5b8e9 (from https://www.piwheels.org/simple/tmd/) 2024-02-19T11:31:22,624 Skipping link: not a file: https://www.piwheels.org/simple/tmd/ 2024-02-19T11:31:22,624 Skipping link: not a file: https://pypi.org/simple/tmd/ 2024-02-19T11:31:22,645 Given no hashes to check 1 links for project 'tmd': discarding no candidates 2024-02-19T11:31:22,663 Collecting tmd==2.4.1 2024-02-19T11:31:22,665 Created temporary directory: /tmp/pip-unpack-wjzuac3s 2024-02-19T11:31:22,887 Downloading TMD-2.4.1.tar.gz (132 kB) 2024-02-19T11:31:23,197 Added tmd==2.4.1 from https://files.pythonhosted.org/packages/6d/86/b6fb7bf419b9dc090266bae2d37432b7a2ec61727544987df1bc8248510e/TMD-2.4.1.tar.gz to build tracker '/tmp/pip-build-tracker-0dl7k8jq' 2024-02-19T11:31:23,202 Created temporary directory: /tmp/pip-build-env-pucfjzjw 2024-02-19T11:31:23,206 Installing build dependencies: started 2024-02-19T11:31:23,208 Running command pip subprocess to install build dependencies 2024-02-19T11:31:24,343 Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-02-19T11:31:24,866 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-02-19T11:31:26,304 Collecting setuptools>=45 2024-02-19T11:31:26,318 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.1.0-py3-none-any.whl (819 kB) 2024-02-19T11:31:26,621 Collecting setuptools_scm>=6.2 (from setuptools_scm[toml]>=6.2) 2024-02-19T11:31:26,639 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-8.0.4-py3-none-any.whl (42 kB) 2024-02-19T11:31:26,972 Collecting packaging>=20 (from setuptools_scm>=6.2->setuptools_scm[toml]>=6.2) 2024-02-19T11:31:26,986 Using cached https://www.piwheels.org/simple/packaging/packaging-23.2-py3-none-any.whl (53 kB) 2024-02-19T11:31:27,109 Collecting typing-extensions (from setuptools_scm>=6.2->setuptools_scm[toml]>=6.2) 2024-02-19T11:31:27,125 Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.9.0-py3-none-any.whl (32 kB) 2024-02-19T11:31:29,638 Installing collected packages: typing-extensions, setuptools, packaging, setuptools_scm 2024-02-19T11:31:32,304 Successfully installed packaging-23.2 setuptools-69.1.0 setuptools_scm-8.0.4 typing-extensions-4.9.0 2024-02-19T11:31:32,585 [notice] A new release of pip is available: 23.3.1 -> 24.0 2024-02-19T11:31:32,585 [notice] To update, run: python3 -m pip install --upgrade pip 2024-02-19T11:31:32,872 Installing build dependencies: finished with status 'done' 2024-02-19T11:31:32,876 Getting requirements to build wheel: started 2024-02-19T11:31:32,877 Running command Getting requirements to build wheel 2024-02-19T11:31:33,417 Getting requirements to build wheel: finished with status 'done' 2024-02-19T11:31:33,438 Installing backend dependencies: started 2024-02-19T11:31:33,439 Running command pip subprocess to install backend dependencies 2024-02-19T11:31:34,575 Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-02-19T11:31:35,087 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-02-19T11:31:35,648 Collecting wheel 2024-02-19T11:31:35,663 Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB) 2024-02-19T11:31:37,888 Installing collected packages: wheel 2024-02-19T11:31:38,108 Creating /tmp/pip-build-env-pucfjzjw/normal/local/bin 2024-02-19T11:31:38,110 changing mode of /tmp/pip-build-env-pucfjzjw/normal/local/bin/wheel to 755 2024-02-19T11:31:38,122 Successfully installed wheel-0.42.0 2024-02-19T11:31:38,399 [notice] A new release of pip is available: 23.3.1 -> 24.0 2024-02-19T11:31:38,400 [notice] To update, run: python3 -m pip install --upgrade pip 2024-02-19T11:31:38,628 Installing backend dependencies: finished with status 'done' 2024-02-19T11:31:38,630 Created temporary directory: /tmp/pip-modern-metadata-9l8w2lut 2024-02-19T11:31:38,632 Preparing metadata (pyproject.toml): started 2024-02-19T11:31:38,633 Running command Preparing metadata (pyproject.toml) 2024-02-19T11:31:39,161 /tmp/pip-build-env-pucfjzjw/overlay/local/lib/python3.11/dist-packages/setuptools_scm/_integration/setuptools.py:90: UserWarning: version of TMD already set 2024-02-19T11:31:39,161 warnings.warn(f"version of {dist_name} already set") 2024-02-19T11:31:39,188 running dist_info 2024-02-19T11:31:39,210 creating /tmp/pip-modern-metadata-9l8w2lut/TMD.egg-info 2024-02-19T11:31:39,218 writing /tmp/pip-modern-metadata-9l8w2lut/TMD.egg-info/PKG-INFO 2024-02-19T11:31:39,225 writing dependency_links to /tmp/pip-modern-metadata-9l8w2lut/TMD.egg-info/dependency_links.txt 2024-02-19T11:31:39,229 writing requirements to /tmp/pip-modern-metadata-9l8w2lut/TMD.egg-info/requires.txt 2024-02-19T11:31:39,230 writing top-level names to /tmp/pip-modern-metadata-9l8w2lut/TMD.egg-info/top_level.txt 2024-02-19T11:31:39,231 writing manifest file '/tmp/pip-modern-metadata-9l8w2lut/TMD.egg-info/SOURCES.txt' 2024-02-19T11:31:39,281 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-02-19T11:31:39,285 reading manifest file '/tmp/pip-modern-metadata-9l8w2lut/TMD.egg-info/SOURCES.txt' 2024-02-19T11:31:39,287 reading manifest template 'MANIFEST.in' 2024-02-19T11:31:39,288 warning: no previously-included files matching '*.py[co]' found anywhere in distribution 2024-02-19T11:31:39,289 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2024-02-19T11:31:39,289 adding license file 'LICENSE-BSD.txt' 2024-02-19T11:31:39,290 adding license file 'LICENSE-LGPL.txt' 2024-02-19T11:31:39,290 adding license file 'AUTHORS.md' 2024-02-19T11:31:39,292 writing manifest file '/tmp/pip-modern-metadata-9l8w2lut/TMD.egg-info/SOURCES.txt' 2024-02-19T11:31:39,293 creating '/tmp/pip-modern-metadata-9l8w2lut/TMD-2.4.1.dist-info' 2024-02-19T11:31:39,481 Preparing metadata (pyproject.toml): finished with status 'done' 2024-02-19T11:31:39,488 Source in /tmp/pip-wheel-_sc7efvp/tmd_3d29964708954a9ea89ff64dc85bfc12 has version 2.4.1, which satisfies requirement tmd==2.4.1 from https://files.pythonhosted.org/packages/6d/86/b6fb7bf419b9dc090266bae2d37432b7a2ec61727544987df1bc8248510e/TMD-2.4.1.tar.gz 2024-02-19T11:31:39,489 Removed tmd==2.4.1 from https://files.pythonhosted.org/packages/6d/86/b6fb7bf419b9dc090266bae2d37432b7a2ec61727544987df1bc8248510e/TMD-2.4.1.tar.gz from build tracker '/tmp/pip-build-tracker-0dl7k8jq' 2024-02-19T11:31:39,494 Created temporary directory: /tmp/pip-unpack-xrg1h5ev 2024-02-19T11:31:39,495 Created temporary directory: /tmp/pip-unpack-tnqm847c 2024-02-19T11:31:39,533 Building wheels for collected packages: tmd 2024-02-19T11:31:39,538 Created temporary directory: /tmp/pip-wheel-vu629g9j 2024-02-19T11:31:39,538 Destination directory: /tmp/pip-wheel-vu629g9j 2024-02-19T11:31:39,540 Building wheel for tmd (pyproject.toml): started 2024-02-19T11:31:39,541 Running command Building wheel for tmd (pyproject.toml) 2024-02-19T11:31:40,041 /tmp/pip-build-env-pucfjzjw/overlay/local/lib/python3.11/dist-packages/setuptools_scm/_integration/setuptools.py:90: UserWarning: version of TMD already set 2024-02-19T11:31:40,041 warnings.warn(f"version of {dist_name} already set") 2024-02-19T11:31:40,125 running bdist_wheel 2024-02-19T11:31:40,173 running build 2024-02-19T11:31:40,174 running build_py 2024-02-19T11:31:40,182 creating build 2024-02-19T11:31:40,182 creating build/lib 2024-02-19T11:31:40,183 creating build/lib/tmd 2024-02-19T11:31:40,184 copying tmd/__init__.py -> build/lib/tmd 2024-02-19T11:31:40,186 copying tmd/utils.py -> build/lib/tmd 2024-02-19T11:31:40,188 creating build/lib/tmd/Topology 2024-02-19T11:31:40,189 copying tmd/Topology/vectorizations.py -> build/lib/tmd/Topology 2024-02-19T11:31:40,191 copying tmd/Topology/statistics.py -> build/lib/tmd/Topology 2024-02-19T11:31:40,193 copying tmd/Topology/analysis.py -> build/lib/tmd/Topology 2024-02-19T11:31:40,195 copying tmd/Topology/__init__.py -> build/lib/tmd/Topology 2024-02-19T11:31:40,197 copying tmd/Topology/methods.py -> build/lib/tmd/Topology 2024-02-19T11:31:40,198 copying tmd/Topology/distances.py -> build/lib/tmd/Topology 2024-02-19T11:31:40,200 copying tmd/Topology/transformations.py -> build/lib/tmd/Topology 2024-02-19T11:31:40,202 copying tmd/Topology/persistent_properties.py -> build/lib/tmd/Topology 2024-02-19T11:31:40,204 creating build/lib/tmd/Population 2024-02-19T11:31:40,205 copying tmd/Population/Population.py -> build/lib/tmd/Population 2024-02-19T11:31:40,207 copying tmd/Population/__init__.py -> build/lib/tmd/Population 2024-02-19T11:31:40,209 creating build/lib/tmd/io 2024-02-19T11:31:40,210 copying tmd/io/swc.py -> build/lib/tmd/io 2024-02-19T11:31:40,212 copying tmd/io/h5.py -> build/lib/tmd/io 2024-02-19T11:31:40,214 copying tmd/io/__init__.py -> build/lib/tmd/io 2024-02-19T11:31:40,216 copying tmd/io/io.py -> build/lib/tmd/io 2024-02-19T11:31:40,218 copying tmd/io/conversion.py -> build/lib/tmd/io 2024-02-19T11:31:40,221 creating build/lib/tmd/Neuron 2024-02-19T11:31:40,222 copying tmd/Neuron/__init__.py -> build/lib/tmd/Neuron 2024-02-19T11:31:40,223 copying tmd/Neuron/Neuron.py -> build/lib/tmd/Neuron 2024-02-19T11:31:40,225 copying tmd/Neuron/methods.py -> build/lib/tmd/Neuron 2024-02-19T11:31:40,228 creating build/lib/tmd/Tree 2024-02-19T11:31:40,229 copying tmd/Tree/__init__.py -> build/lib/tmd/Tree 2024-02-19T11:31:40,230 copying tmd/Tree/Tree.py -> build/lib/tmd/Tree 2024-02-19T11:31:40,233 copying tmd/Tree/methods.py -> build/lib/tmd/Tree 2024-02-19T11:31:40,236 creating build/lib/tmd/view 2024-02-19T11:31:40,237 copying tmd/view/common.py -> build/lib/tmd/view 2024-02-19T11:31:40,239 copying tmd/view/__init__.py -> build/lib/tmd/view 2024-02-19T11:31:40,241 copying tmd/view/plot.py -> build/lib/tmd/view 2024-02-19T11:31:40,244 copying tmd/view/view.py -> build/lib/tmd/view 2024-02-19T11:31:40,247 creating build/lib/tmd/Soma 2024-02-19T11:31:40,248 copying tmd/Soma/__init__.py -> build/lib/tmd/Soma 2024-02-19T11:31:40,250 copying tmd/Soma/methods.py -> build/lib/tmd/Soma 2024-02-19T11:31:40,252 copying tmd/Soma/Soma.py -> build/lib/tmd/Soma 2024-02-19T11:31:40,254 running egg_info 2024-02-19T11:31:40,259 writing TMD.egg-info/PKG-INFO 2024-02-19T11:31:40,266 writing dependency_links to TMD.egg-info/dependency_links.txt 2024-02-19T11:31:40,270 writing requirements to TMD.egg-info/requires.txt 2024-02-19T11:31:40,272 writing top-level names to TMD.egg-info/top_level.txt 2024-02-19T11:31:40,309 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-02-19T11:31:40,312 reading manifest file 'TMD.egg-info/SOURCES.txt' 2024-02-19T11:31:40,323 reading manifest template 'MANIFEST.in' 2024-02-19T11:31:40,325 warning: no previously-included files matching '*.py[co]' found anywhere in distribution 2024-02-19T11:31:40,325 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2024-02-19T11:31:40,326 adding license file 'LICENSE-BSD.txt' 2024-02-19T11:31:40,326 adding license file 'LICENSE-LGPL.txt' 2024-02-19T11:31:40,327 adding license file 'AUTHORS.md' 2024-02-19T11:31:40,331 writing manifest file 'TMD.egg-info/SOURCES.txt' 2024-02-19T11:31:40,352 installing to build/bdist.linux-armv7l/wheel 2024-02-19T11:31:40,353 running install 2024-02-19T11:31:40,376 running install_lib 2024-02-19T11:31:40,384 creating build/bdist.linux-armv7l 2024-02-19T11:31:40,384 creating build/bdist.linux-armv7l/wheel 2024-02-19T11:31:40,386 creating build/bdist.linux-armv7l/wheel/tmd 2024-02-19T11:31:40,388 creating build/bdist.linux-armv7l/wheel/tmd/Topology 2024-02-19T11:31:40,389 copying build/lib/tmd/Topology/vectorizations.py -> build/bdist.linux-armv7l/wheel/tmd/Topology 2024-02-19T11:31:40,391 copying build/lib/tmd/Topology/statistics.py -> build/bdist.linux-armv7l/wheel/tmd/Topology 2024-02-19T11:31:40,393 copying build/lib/tmd/Topology/analysis.py -> build/bdist.linux-armv7l/wheel/tmd/Topology 2024-02-19T11:31:40,395 copying build/lib/tmd/Topology/__init__.py -> build/bdist.linux-armv7l/wheel/tmd/Topology 2024-02-19T11:31:40,397 copying build/lib/tmd/Topology/methods.py -> build/bdist.linux-armv7l/wheel/tmd/Topology 2024-02-19T11:31:40,399 copying build/lib/tmd/Topology/distances.py -> build/bdist.linux-armv7l/wheel/tmd/Topology 2024-02-19T11:31:40,401 copying build/lib/tmd/Topology/transformations.py -> build/bdist.linux-armv7l/wheel/tmd/Topology 2024-02-19T11:31:40,402 copying build/lib/tmd/Topology/persistent_properties.py -> build/bdist.linux-armv7l/wheel/tmd/Topology 2024-02-19T11:31:40,405 creating build/bdist.linux-armv7l/wheel/tmd/Population 2024-02-19T11:31:40,406 copying build/lib/tmd/Population/Population.py -> build/bdist.linux-armv7l/wheel/tmd/Population 2024-02-19T11:31:40,408 copying build/lib/tmd/Population/__init__.py -> build/bdist.linux-armv7l/wheel/tmd/Population 2024-02-19T11:31:40,409 copying build/lib/tmd/__init__.py -> build/bdist.linux-armv7l/wheel/tmd 2024-02-19T11:31:40,411 creating build/bdist.linux-armv7l/wheel/tmd/io 2024-02-19T11:31:40,412 copying build/lib/tmd/io/swc.py -> build/bdist.linux-armv7l/wheel/tmd/io 2024-02-19T11:31:40,415 copying build/lib/tmd/io/h5.py -> build/bdist.linux-armv7l/wheel/tmd/io 2024-02-19T11:31:40,417 copying build/lib/tmd/io/__init__.py -> build/bdist.linux-armv7l/wheel/tmd/io 2024-02-19T11:31:40,419 copying build/lib/tmd/io/io.py -> build/bdist.linux-armv7l/wheel/tmd/io 2024-02-19T11:31:40,421 copying build/lib/tmd/io/conversion.py -> build/bdist.linux-armv7l/wheel/tmd/io 2024-02-19T11:31:40,424 creating build/bdist.linux-armv7l/wheel/tmd/Neuron 2024-02-19T11:31:40,425 copying build/lib/tmd/Neuron/__init__.py -> build/bdist.linux-armv7l/wheel/tmd/Neuron 2024-02-19T11:31:40,427 copying build/lib/tmd/Neuron/Neuron.py -> build/bdist.linux-armv7l/wheel/tmd/Neuron 2024-02-19T11:31:40,429 copying build/lib/tmd/Neuron/methods.py -> build/bdist.linux-armv7l/wheel/tmd/Neuron 2024-02-19T11:31:40,431 creating build/bdist.linux-armv7l/wheel/tmd/Tree 2024-02-19T11:31:40,432 copying build/lib/tmd/Tree/__init__.py -> build/bdist.linux-armv7l/wheel/tmd/Tree 2024-02-19T11:31:40,434 copying build/lib/tmd/Tree/Tree.py -> build/bdist.linux-armv7l/wheel/tmd/Tree 2024-02-19T11:31:40,436 copying build/lib/tmd/Tree/methods.py -> build/bdist.linux-armv7l/wheel/tmd/Tree 2024-02-19T11:31:40,439 creating build/bdist.linux-armv7l/wheel/tmd/view 2024-02-19T11:31:40,440 copying build/lib/tmd/view/common.py -> build/bdist.linux-armv7l/wheel/tmd/view 2024-02-19T11:31:40,443 copying build/lib/tmd/view/__init__.py -> build/bdist.linux-armv7l/wheel/tmd/view 2024-02-19T11:31:40,445 copying build/lib/tmd/view/plot.py -> build/bdist.linux-armv7l/wheel/tmd/view 2024-02-19T11:31:40,447 copying build/lib/tmd/view/view.py -> build/bdist.linux-armv7l/wheel/tmd/view 2024-02-19T11:31:40,450 copying build/lib/tmd/utils.py -> build/bdist.linux-armv7l/wheel/tmd 2024-02-19T11:31:40,452 creating build/bdist.linux-armv7l/wheel/tmd/Soma 2024-02-19T11:31:40,453 copying build/lib/tmd/Soma/__init__.py -> build/bdist.linux-armv7l/wheel/tmd/Soma 2024-02-19T11:31:40,455 copying build/lib/tmd/Soma/methods.py -> build/bdist.linux-armv7l/wheel/tmd/Soma 2024-02-19T11:31:40,456 copying build/lib/tmd/Soma/Soma.py -> build/bdist.linux-armv7l/wheel/tmd/Soma 2024-02-19T11:31:40,458 running install_egg_info 2024-02-19T11:31:40,466 Copying TMD.egg-info to build/bdist.linux-armv7l/wheel/TMD-2.4.1-py3.11.egg-info 2024-02-19T11:31:40,477 running install_scripts 2024-02-19T11:31:40,497 creating build/bdist.linux-armv7l/wheel/TMD-2.4.1.dist-info/WHEEL 2024-02-19T11:31:40,500 creating '/tmp/pip-wheel-vu629g9j/.tmp-i_skss72/TMD-2.4.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-02-19T11:31:40,503 adding 'tmd/__init__.py' 2024-02-19T11:31:40,504 adding 'tmd/utils.py' 2024-02-19T11:31:40,506 adding 'tmd/Neuron/Neuron.py' 2024-02-19T11:31:40,508 adding 'tmd/Neuron/__init__.py' 2024-02-19T11:31:40,509 adding 'tmd/Neuron/methods.py' 2024-02-19T11:31:40,511 adding 'tmd/Population/Population.py' 2024-02-19T11:31:40,512 adding 'tmd/Population/__init__.py' 2024-02-19T11:31:40,514 adding 'tmd/Soma/Soma.py' 2024-02-19T11:31:40,516 adding 'tmd/Soma/__init__.py' 2024-02-19T11:31:40,517 adding 'tmd/Soma/methods.py' 2024-02-19T11:31:40,519 adding 'tmd/Topology/__init__.py' 2024-02-19T11:31:40,521 adding 'tmd/Topology/analysis.py' 2024-02-19T11:31:40,522 adding 'tmd/Topology/distances.py' 2024-02-19T11:31:40,524 adding 'tmd/Topology/methods.py' 2024-02-19T11:31:40,526 adding 'tmd/Topology/persistent_properties.py' 2024-02-19T11:31:40,527 adding 'tmd/Topology/statistics.py' 2024-02-19T11:31:40,528 adding 'tmd/Topology/transformations.py' 2024-02-19T11:31:40,530 adding 'tmd/Topology/vectorizations.py' 2024-02-19T11:31:40,532 adding 'tmd/Tree/Tree.py' 2024-02-19T11:31:40,534 adding 'tmd/Tree/__init__.py' 2024-02-19T11:31:40,536 adding 'tmd/Tree/methods.py' 2024-02-19T11:31:40,538 adding 'tmd/io/__init__.py' 2024-02-19T11:31:40,544 adding 'tmd/io/conversion.py' 2024-02-19T11:31:40,545 adding 'tmd/io/h5.py' 2024-02-19T11:31:40,547 adding 'tmd/io/io.py' 2024-02-19T11:31:40,549 adding 'tmd/io/swc.py' 2024-02-19T11:31:40,551 adding 'tmd/view/__init__.py' 2024-02-19T11:31:40,553 adding 'tmd/view/common.py' 2024-02-19T11:31:40,555 adding 'tmd/view/plot.py' 2024-02-19T11:31:40,559 adding 'tmd/view/view.py' 2024-02-19T11:31:40,560 adding 'TMD-2.4.1.dist-info/AUTHORS.md' 2024-02-19T11:31:40,562 adding 'TMD-2.4.1.dist-info/LICENSE-BSD.txt' 2024-02-19T11:31:40,563 adding 'TMD-2.4.1.dist-info/LICENSE-LGPL.txt' 2024-02-19T11:31:40,565 adding 'TMD-2.4.1.dist-info/METADATA' 2024-02-19T11:31:40,566 adding 'TMD-2.4.1.dist-info/WHEEL' 2024-02-19T11:31:40,567 adding 'TMD-2.4.1.dist-info/top_level.txt' 2024-02-19T11:31:40,568 adding 'TMD-2.4.1.dist-info/RECORD' 2024-02-19T11:31:40,570 removing build/bdist.linux-armv7l/wheel 2024-02-19T11:31:40,674 Building wheel for tmd (pyproject.toml): finished with status 'done' 2024-02-19T11:31:40,680 Created wheel for tmd: filename=TMD-2.4.1-py3-none-any.whl size=58788 sha256=fa4f703011702a73b074b6b0c04f8e2f0b59b1781e79b29c11902cc7449160d7 2024-02-19T11:31:40,681 Stored in directory: /tmp/pip-ephem-wheel-cache-94ok15po/wheels/5c/37/ff/7a1e6bef9380f3cc03d83146ac7b51d4c141290c5b21bfcbe3 2024-02-19T11:31:40,694 Successfully built tmd 2024-02-19T11:31:40,701 Removed build tracker: '/tmp/pip-build-tracker-0dl7k8jq'