2024-02-21T09:44:01,381 Created temporary directory: /tmp/pip-build-tracker-if7oevz1
2024-02-21T09:44:01,382 Initialized build tracking at /tmp/pip-build-tracker-if7oevz1
2024-02-21T09:44:01,383 Created build tracker: /tmp/pip-build-tracker-if7oevz1
2024-02-21T09:44:01,383 Entered build tracker: /tmp/pip-build-tracker-if7oevz1
2024-02-21T09:44:01,384 Created temporary directory: /tmp/pip-wheel-mbcqksia
2024-02-21T09:44:01,387 Created temporary directory: /tmp/pip-ephem-wheel-cache-syb0hri7
2024-02-21T09:44:01,410 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-02-21T09:44:01,413 2 location(s) to search for versions of nnunetv2:
2024-02-21T09:44:01,413 * https://pypi.org/simple/nnunetv2/
2024-02-21T09:44:01,413 * https://www.piwheels.org/simple/nnunetv2/
2024-02-21T09:44:01,414 Fetching project page and analyzing links: https://pypi.org/simple/nnunetv2/
2024-02-21T09:44:01,415 Getting page https://pypi.org/simple/nnunetv2/
2024-02-21T09:44:01,417 Found index url https://pypi.org/simple/
2024-02-21T09:44:01,631 Fetched page https://pypi.org/simple/nnunetv2/ as application/vnd.pypi.simple.v1+json
2024-02-21T09:44:01,633   Found link https://files.pythonhosted.org/packages/e9/76/b07d94295b8680333c267420cb8fe68780c1f0330b01f83de221e14398f8/nnunetv2-2.0.tar.gz (from https://pypi.org/simple/nnunetv2/), version: 2.0
2024-02-21T09:44:01,634   Found link https://files.pythonhosted.org/packages/ec/d6/1db7ccf9b55e60ef9f1201ce7086b69dc87e4a0ace0a9779d7763097ff4f/nnunetv2-2.1.tar.gz (from https://pypi.org/simple/nnunetv2/) (requires-python:>=3.9), version: 2.1
2024-02-21T09:44:01,635   Found link https://files.pythonhosted.org/packages/75/0c/970bded1a4462ac6dfe97aaa8cfe2ae96e24597d26da6a3d7be829832bb3/nnunetv2-2.1.2.tar.gz (from https://pypi.org/simple/nnunetv2/) (requires-python:>=3.9), version: 2.1.2
2024-02-21T09:44:01,636   Found link https://files.pythonhosted.org/packages/23/ec/d5a80410ed705da963c4df59ae27bea4d28ca2861949275751c2087706c2/nnunetv2-2.2.tar.gz (from https://pypi.org/simple/nnunetv2/) (requires-python:>=3.9), version: 2.2
2024-02-21T09:44:01,637   Found link https://files.pythonhosted.org/packages/cc/34/e089ded4d1fbe0dabca3f5c23b47c73c3ace4c5666cb5fdaeb2083a28e62/nnunetv2-2.2.1.tar.gz (from https://pypi.org/simple/nnunetv2/) (requires-python:>=3.9), version: 2.2.1
2024-02-21T09:44:01,638   Skipping link: No binaries permitted for nnunetv2: https://files.pythonhosted.org/packages/e8/d5/cac9ff935351af33fa3c65ad5c24435d38425fbec420fc40af8397eb0134/nnunetv2-2.2.2-py3-none-any.whl (from https://pypi.org/simple/nnunetv2/) (requires-python:>=3.9)
2024-02-21T09:44:01,639   Found link https://files.pythonhosted.org/packages/dd/39/eb52587961d684992f454bd08be0afa495e6b25a75a4c20001401c7c3f00/nnunetv2-2.2.2.tar.gz (from https://pypi.org/simple/nnunetv2/) (requires-python:>=3.9), version: 2.2.2
2024-02-21T09:44:01,640   Found link https://files.pythonhosted.org/packages/e1/fd/a92675fb9f266be88eb06db41813021cbcb22af7ca384f8442343bfa050c/nnunetv2-2.3.tar.gz (from https://pypi.org/simple/nnunetv2/) (requires-python:>=3.9), version: 2.3
2024-02-21T09:44:01,641 Fetching project page and analyzing links: https://www.piwheels.org/simple/nnunetv2/
2024-02-21T09:44:01,641 Getting page https://www.piwheels.org/simple/nnunetv2/
2024-02-21T09:44:01,643 Found index url https://www.piwheels.org/simple/
2024-02-21T09:44:01,792 Fetched page https://www.piwheels.org/simple/nnunetv2/ as text/html
2024-02-21T09:44:01,795   Skipping link: No binaries permitted for nnunetv2: https://www.piwheels.org/simple/nnunetv2/nnunetv2-2.3-py3-none-any.whl#sha256=3a5d671ead32c5efc273b3ac522963b258900dcad9465d980446750ff4329275 (from https://www.piwheels.org/simple/nnunetv2/) (requires-python:>=3.9)
2024-02-21T09:44:01,796   Skipping link: No binaries permitted for nnunetv2: https://www.piwheels.org/simple/nnunetv2/nnunetv2-2.2.1-py3-none-any.whl#sha256=382d4f06ffe8d21ba4a15b6b278570a58b5185ddeec2b4840185f5fe6bc1faad (from https://www.piwheels.org/simple/nnunetv2/) (requires-python:>=3.9)
2024-02-21T09:44:01,797   Skipping link: No binaries permitted for nnunetv2: https://www.piwheels.org/simple/nnunetv2/nnunetv2-2.2-py3-none-any.whl#sha256=cead7a9af00a7bae7c46333d240c36c082516e6c2449992d0310326d844c0bd7 (from https://www.piwheels.org/simple/nnunetv2/) (requires-python:>=3.9)
2024-02-21T09:44:01,797   Skipping link: No binaries permitted for nnunetv2: https://www.piwheels.org/simple/nnunetv2/nnunetv2-2.1.2-py3-none-any.whl#sha256=cbd7dda5e9ec83dff80a22a1493aee15145e11cabc0783dd921d613484f08b77 (from https://www.piwheels.org/simple/nnunetv2/) (requires-python:>=3.9)
2024-02-21T09:44:01,798   Skipping link: No binaries permitted for nnunetv2: https://www.piwheels.org/simple/nnunetv2/nnunetv2-2.1-py3-none-any.whl#sha256=1aaa6b18e813f011d50ac92dd2b1a35512438d54a3dd7d63dc8dee150c5ab3ee (from https://www.piwheels.org/simple/nnunetv2/) (requires-python:>=3.9)
2024-02-21T09:44:01,799   Skipping link: No binaries permitted for nnunetv2: https://www.piwheels.org/simple/nnunetv2/nnunetv2-2.0-py3-none-any.whl#sha256=fdacc5b6c5ae86113368c37f25e21643894052a24c65235ffff6c37a0d1a7b31 (from https://www.piwheels.org/simple/nnunetv2/)
2024-02-21T09:44:01,799 Skipping link: not a file: https://www.piwheels.org/simple/nnunetv2/
2024-02-21T09:44:01,800 Skipping link: not a file: https://pypi.org/simple/nnunetv2/
2024-02-21T09:44:01,820 Given no hashes to check 1 links for project 'nnunetv2': discarding no candidates
2024-02-21T09:44:01,839 Collecting nnunetv2==2.2.2
2024-02-21T09:44:01,842   Created temporary directory: /tmp/pip-unpack-hpwyxhea
2024-02-21T09:44:02,054   Downloading nnunetv2-2.2.2.tar.gz (179 kB)
2024-02-21T09:44:02,441   Added nnunetv2==2.2.2 from https://files.pythonhosted.org/packages/dd/39/eb52587961d684992f454bd08be0afa495e6b25a75a4c20001401c7c3f00/nnunetv2-2.2.2.tar.gz to build tracker '/tmp/pip-build-tracker-if7oevz1'
2024-02-21T09:44:02,448   Created temporary directory: /tmp/pip-build-env-e7xaf8l3
2024-02-21T09:44:02,452   Installing build dependencies: started
2024-02-21T09:44:02,453   Running command pip subprocess to install build dependencies
2024-02-21T09:44:03,586   Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2024-02-21T09:44:04,188   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-02-21T09:44:05,644   Collecting setuptools>=40.8.0
2024-02-21T09:44:05,659     Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.1.0-py3-none-any.whl (819 kB)
2024-02-21T09:44:05,882   Collecting wheel
2024-02-21T09:44:05,897     Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB)
2024-02-21T09:44:09,427   Installing collected packages: wheel, setuptools
2024-02-21T09:44:09,644     Creating /tmp/pip-build-env-e7xaf8l3/overlay/local/bin
2024-02-21T09:44:09,646     changing mode of /tmp/pip-build-env-e7xaf8l3/overlay/local/bin/wheel to 755
2024-02-21T09:44:11,886   Successfully installed setuptools-69.1.0 wheel-0.42.0

2024-02-21T09:44:12,366   [notice] A new release of pip is available: 23.3.1 -> 24.0
2024-02-21T09:44:12,367   [notice] To update, run: python3 -m pip install --upgrade pip
2024-02-21T09:44:12,636   Installing build dependencies: finished with status 'done'
2024-02-21T09:44:12,639   Getting requirements to build wheel: started
2024-02-21T09:44:12,640   Running command Getting requirements to build wheel
2024-02-21T09:44:13,520   running egg_info
2024-02-21T09:44:13,525   writing nnunetv2.egg-info/PKG-INFO
2024-02-21T09:44:13,531   writing dependency_links to nnunetv2.egg-info/dependency_links.txt
2024-02-21T09:44:13,533   writing entry points to nnunetv2.egg-info/entry_points.txt
2024-02-21T09:44:13,536   writing requirements to nnunetv2.egg-info/requires.txt
2024-02-21T09:44:13,537   writing top-level names to nnunetv2.egg-info/top_level.txt
2024-02-21T09:44:13,597   reading manifest file 'nnunetv2.egg-info/SOURCES.txt'
2024-02-21T09:44:13,602   adding license file 'LICENSE'
2024-02-21T09:44:13,611   writing manifest file 'nnunetv2.egg-info/SOURCES.txt'
2024-02-21T09:44:13,729   Getting requirements to build wheel: finished with status 'done'
2024-02-21T09:44:13,740   Created temporary directory: /tmp/pip-modern-metadata-2ec3koi8
2024-02-21T09:44:13,742   Preparing metadata (pyproject.toml): started
2024-02-21T09:44:13,743   Running command Preparing metadata (pyproject.toml)
2024-02-21T09:44:14,540   running dist_info
2024-02-21T09:44:14,545   creating /tmp/pip-modern-metadata-2ec3koi8/nnunetv2.egg-info
2024-02-21T09:44:14,551   writing /tmp/pip-modern-metadata-2ec3koi8/nnunetv2.egg-info/PKG-INFO
2024-02-21T09:44:14,557   writing dependency_links to /tmp/pip-modern-metadata-2ec3koi8/nnunetv2.egg-info/dependency_links.txt
2024-02-21T09:44:14,559   writing entry points to /tmp/pip-modern-metadata-2ec3koi8/nnunetv2.egg-info/entry_points.txt
2024-02-21T09:44:14,561   writing requirements to /tmp/pip-modern-metadata-2ec3koi8/nnunetv2.egg-info/requires.txt
2024-02-21T09:44:14,562   writing top-level names to /tmp/pip-modern-metadata-2ec3koi8/nnunetv2.egg-info/top_level.txt
2024-02-21T09:44:14,564   writing manifest file '/tmp/pip-modern-metadata-2ec3koi8/nnunetv2.egg-info/SOURCES.txt'
2024-02-21T09:44:14,614   reading manifest file '/tmp/pip-modern-metadata-2ec3koi8/nnunetv2.egg-info/SOURCES.txt'
2024-02-21T09:44:14,616   adding license file 'LICENSE'
2024-02-21T09:44:14,623   writing manifest file '/tmp/pip-modern-metadata-2ec3koi8/nnunetv2.egg-info/SOURCES.txt'
2024-02-21T09:44:14,624   creating '/tmp/pip-modern-metadata-2ec3koi8/nnunetv2-2.2.2.dist-info'
2024-02-21T09:44:14,783   Preparing metadata (pyproject.toml): finished with status 'done'
2024-02-21T09:44:14,790   Source in /tmp/pip-wheel-mbcqksia/nnunetv2_fb3a6fdd39d74ea5a734b79747b16f38 has version 2.2.2, which satisfies requirement nnunetv2==2.2.2 from https://files.pythonhosted.org/packages/dd/39/eb52587961d684992f454bd08be0afa495e6b25a75a4c20001401c7c3f00/nnunetv2-2.2.2.tar.gz
2024-02-21T09:44:14,791   Removed nnunetv2==2.2.2 from https://files.pythonhosted.org/packages/dd/39/eb52587961d684992f454bd08be0afa495e6b25a75a4c20001401c7c3f00/nnunetv2-2.2.2.tar.gz from build tracker '/tmp/pip-build-tracker-if7oevz1'
2024-02-21T09:44:14,802 Created temporary directory: /tmp/pip-unpack-n0ospocf
2024-02-21T09:44:14,803 Created temporary directory: /tmp/pip-unpack-o6zyjv1c
2024-02-21T09:44:14,840 Building wheels for collected packages: nnunetv2
2024-02-21T09:44:14,844   Created temporary directory: /tmp/pip-wheel-wv207u1j
2024-02-21T09:44:14,845   Destination directory: /tmp/pip-wheel-wv207u1j
2024-02-21T09:44:14,847   Building wheel for nnunetv2 (pyproject.toml): started
2024-02-21T09:44:14,848   Running command Building wheel for nnunetv2 (pyproject.toml)
2024-02-21T09:44:15,629   running bdist_wheel
2024-02-21T09:44:15,651   running build
2024-02-21T09:44:15,651   running build_py
2024-02-21T09:44:15,656   creating build
2024-02-21T09:44:15,657   creating build/lib
2024-02-21T09:44:15,658   creating build/lib/nnunetv2
2024-02-21T09:44:15,659   copying nnunetv2/configuration.py -> build/lib/nnunetv2
2024-02-21T09:44:15,661   copying nnunetv2/__init__.py -> build/lib/nnunetv2
2024-02-21T09:44:15,662   copying nnunetv2/paths.py -> build/lib/nnunetv2
2024-02-21T09:44:15,664   creating build/lib/nnunetv2/evaluation
2024-02-21T09:44:15,665   copying nnunetv2/evaluation/accumulate_cv_results.py -> build/lib/nnunetv2/evaluation
2024-02-21T09:44:15,667   copying nnunetv2/evaluation/find_best_configuration.py -> build/lib/nnunetv2/evaluation
2024-02-21T09:44:15,670   copying nnunetv2/evaluation/evaluate_predictions.py -> build/lib/nnunetv2/evaluation
2024-02-21T09:44:15,672   copying nnunetv2/evaluation/__init__.py -> build/lib/nnunetv2/evaluation
2024-02-21T09:44:15,674   creating build/lib/nnunetv2/inference
2024-02-21T09:44:15,675   copying nnunetv2/inference/predict_from_raw_data.py -> build/lib/nnunetv2/inference
2024-02-21T09:44:15,678   copying nnunetv2/inference/examples.py -> build/lib/nnunetv2/inference
2024-02-21T09:44:15,680   copying nnunetv2/inference/sliding_window_prediction.py -> build/lib/nnunetv2/inference
2024-02-21T09:44:15,682   copying nnunetv2/inference/export_prediction.py -> build/lib/nnunetv2/inference
2024-02-21T09:44:15,684   copying nnunetv2/inference/__init__.py -> build/lib/nnunetv2/inference
2024-02-21T09:44:15,686   copying nnunetv2/inference/data_iterators.py -> build/lib/nnunetv2/inference
2024-02-21T09:44:15,688   creating build/lib/nnunetv2/ensembling
2024-02-21T09:44:15,689   copying nnunetv2/ensembling/__init__.py -> build/lib/nnunetv2/ensembling
2024-02-21T09:44:15,691   copying nnunetv2/ensembling/ensemble.py -> build/lib/nnunetv2/ensembling
2024-02-21T09:44:15,693   creating build/lib/nnunetv2/batch_running
2024-02-21T09:44:15,694   copying nnunetv2/batch_running/collect_results_custom_Decathlon.py -> build/lib/nnunetv2/batch_running
2024-02-21T09:44:15,696   copying nnunetv2/batch_running/generate_lsf_runs_customDecathlon.py -> build/lib/nnunetv2/batch_running
2024-02-21T09:44:15,697   copying nnunetv2/batch_running/__init__.py -> build/lib/nnunetv2/batch_running
2024-02-21T09:44:15,698   copying nnunetv2/batch_running/collect_results_custom_Decathlon_2d.py -> build/lib/nnunetv2/batch_running
2024-02-21T09:44:15,700   creating build/lib/nnunetv2/experiment_planning
2024-02-21T09:44:15,701   copying nnunetv2/experiment_planning/plan_and_preprocess_api.py -> build/lib/nnunetv2/experiment_planning
2024-02-21T09:44:15,703   copying nnunetv2/experiment_planning/plan_and_preprocess_entrypoints.py -> build/lib/nnunetv2/experiment_planning
2024-02-21T09:44:15,706   copying nnunetv2/experiment_planning/__init__.py -> build/lib/nnunetv2/experiment_planning
2024-02-21T09:44:15,707   copying nnunetv2/experiment_planning/verify_dataset_integrity.py -> build/lib/nnunetv2/experiment_planning
2024-02-21T09:44:15,710   creating build/lib/nnunetv2/postprocessing
2024-02-21T09:44:15,710   copying nnunetv2/postprocessing/__init__.py -> build/lib/nnunetv2/postprocessing
2024-02-21T09:44:15,712   copying nnunetv2/postprocessing/remove_connected_components.py -> build/lib/nnunetv2/postprocessing
2024-02-21T09:44:15,715   creating build/lib/nnunetv2/model_sharing
2024-02-21T09:44:15,715   copying nnunetv2/model_sharing/model_download.py -> build/lib/nnunetv2/model_sharing
2024-02-21T09:44:15,717   copying nnunetv2/model_sharing/entry_points.py -> build/lib/nnunetv2/model_sharing
2024-02-21T09:44:15,719   copying nnunetv2/model_sharing/__init__.py -> build/lib/nnunetv2/model_sharing
2024-02-21T09:44:15,720   copying nnunetv2/model_sharing/model_export.py -> build/lib/nnunetv2/model_sharing
2024-02-21T09:44:15,722   copying nnunetv2/model_sharing/model_import.py -> build/lib/nnunetv2/model_sharing
2024-02-21T09:44:15,724   creating build/lib/nnunetv2/training
2024-02-21T09:44:15,725   copying nnunetv2/training/__init__.py -> build/lib/nnunetv2/training
2024-02-21T09:44:15,727   creating build/lib/nnunetv2/preprocessing
2024-02-21T09:44:15,728   copying nnunetv2/preprocessing/__init__.py -> build/lib/nnunetv2/preprocessing
2024-02-21T09:44:15,730   creating build/lib/nnunetv2/run
2024-02-21T09:44:15,731   copying nnunetv2/run/load_pretrained_weights.py -> build/lib/nnunetv2/run
2024-02-21T09:44:15,733   copying nnunetv2/run/run_training.py -> build/lib/nnunetv2/run
2024-02-21T09:44:15,735   copying nnunetv2/run/__init__.py -> build/lib/nnunetv2/run
2024-02-21T09:44:15,737   creating build/lib/nnunetv2/tests
2024-02-21T09:44:15,738   copying nnunetv2/tests/__init__.py -> build/lib/nnunetv2/tests
2024-02-21T09:44:15,740   creating build/lib/nnunetv2/imageio
2024-02-21T09:44:15,741   copying nnunetv2/imageio/tif_reader_writer.py -> build/lib/nnunetv2/imageio
2024-02-21T09:44:15,743   copying nnunetv2/imageio/base_reader_writer.py -> build/lib/nnunetv2/imageio
2024-02-21T09:44:15,745   copying nnunetv2/imageio/natural_image_reager_writer.py -> build/lib/nnunetv2/imageio
2024-02-21T09:44:15,747   copying nnunetv2/imageio/simpleitk_reader_writer.py -> build/lib/nnunetv2/imageio
2024-02-21T09:44:15,749   copying nnunetv2/imageio/__init__.py -> build/lib/nnunetv2/imageio
2024-02-21T09:44:15,750   copying nnunetv2/imageio/nibabel_reader_writer.py -> build/lib/nnunetv2/imageio
2024-02-21T09:44:15,752   copying nnunetv2/imageio/reader_writer_registry.py -> build/lib/nnunetv2/imageio
2024-02-21T09:44:15,755   creating build/lib/nnunetv2/dataset_conversion
2024-02-21T09:44:15,756   copying nnunetv2/dataset_conversion/Dataset219_Amos2022_task2.py -> build/lib/nnunetv2/dataset_conversion
2024-02-21T09:44:15,757   copying nnunetv2/dataset_conversion/generate_dataset_json.py -> build/lib/nnunetv2/dataset_conversion
2024-02-21T09:44:15,759   copying nnunetv2/dataset_conversion/Dataset220_KiTS2023.py -> build/lib/nnunetv2/dataset_conversion
2024-02-21T09:44:15,761   copying nnunetv2/dataset_conversion/Dataset137_BraTS21.py -> build/lib/nnunetv2/dataset_conversion
2024-02-21T09:44:15,762   copying nnunetv2/dataset_conversion/Dataset073_Fluo_C3DH_A549_SIM.py -> build/lib/nnunetv2/dataset_conversion
2024-02-21T09:44:15,764   copying nnunetv2/dataset_conversion/Dataset221_AutoPETII_2023.py -> build/lib/nnunetv2/dataset_conversion
2024-02-21T09:44:15,766   copying nnunetv2/dataset_conversion/Dataset114_MNMs.py -> build/lib/nnunetv2/dataset_conversion
2024-02-21T09:44:15,768   copying nnunetv2/dataset_conversion/Dataset988_dummyDataset4.py -> build/lib/nnunetv2/dataset_conversion
2024-02-21T09:44:15,769   copying nnunetv2/dataset_conversion/convert_MSD_dataset.py -> build/lib/nnunetv2/dataset_conversion
2024-02-21T09:44:15,771   copying nnunetv2/dataset_conversion/__init__.py -> build/lib/nnunetv2/dataset_conversion
2024-02-21T09:44:15,773   copying nnunetv2/dataset_conversion/Dataset115_EMIDEC.py -> build/lib/nnunetv2/dataset_conversion
2024-02-21T09:44:15,774   copying nnunetv2/dataset_conversion/Dataset120_RoadSegmentation.py -> build/lib/nnunetv2/dataset_conversion
2024-02-21T09:44:15,776   copying nnunetv2/dataset_conversion/Dataset027_ACDC.py -> build/lib/nnunetv2/dataset_conversion
2024-02-21T09:44:15,778   copying nnunetv2/dataset_conversion/Dataset218_Amos2022_task1.py -> build/lib/nnunetv2/dataset_conversion
2024-02-21T09:44:15,779   copying nnunetv2/dataset_conversion/convert_raw_dataset_from_old_nnunet_format.py -> build/lib/nnunetv2/dataset_conversion
2024-02-21T09:44:15,782   creating build/lib/nnunetv2/utilities
2024-02-21T09:44:15,783   copying nnunetv2/utilities/helpers.py -> build/lib/nnunetv2/utilities
2024-02-21T09:44:15,785   copying nnunetv2/utilities/find_class_by_name.py -> build/lib/nnunetv2/utilities
2024-02-21T09:44:15,786   copying nnunetv2/utilities/get_network_from_plans.py -> build/lib/nnunetv2/utilities
2024-02-21T09:44:15,788   copying nnunetv2/utilities/json_export.py -> build/lib/nnunetv2/utilities
2024-02-21T09:44:15,789   copying nnunetv2/utilities/collate_outputs.py -> build/lib/nnunetv2/utilities
2024-02-21T09:44:15,791   copying nnunetv2/utilities/file_path_utilities.py -> build/lib/nnunetv2/utilities
2024-02-21T09:44:15,793   copying nnunetv2/utilities/ddp_allgather.py -> build/lib/nnunetv2/utilities
2024-02-21T09:44:15,795   copying nnunetv2/utilities/default_n_proc_DA.py -> build/lib/nnunetv2/utilities
2024-02-21T09:44:15,797   copying nnunetv2/utilities/network_initialization.py -> build/lib/nnunetv2/utilities
2024-02-21T09:44:15,798   copying nnunetv2/utilities/__init__.py -> build/lib/nnunetv2/utilities
2024-02-21T09:44:15,800   copying nnunetv2/utilities/utils.py -> build/lib/nnunetv2/utilities
2024-02-21T09:44:15,801   copying nnunetv2/utilities/overlay_plots.py -> build/lib/nnunetv2/utilities
2024-02-21T09:44:15,803   copying nnunetv2/utilities/dataset_name_id_conversion.py -> build/lib/nnunetv2/utilities
2024-02-21T09:44:15,806   creating build/lib/nnunetv2/batch_running/benchmarking
2024-02-21T09:44:15,807   copying nnunetv2/batch_running/benchmarking/generate_benchmarking_commands.py -> build/lib/nnunetv2/batch_running/benchmarking
2024-02-21T09:44:15,809   copying nnunetv2/batch_running/benchmarking/summarize_benchmark_results.py -> build/lib/nnunetv2/batch_running/benchmarking
2024-02-21T09:44:15,810   copying nnunetv2/batch_running/benchmarking/__init__.py -> build/lib/nnunetv2/batch_running/benchmarking
2024-02-21T09:44:15,812   creating build/lib/nnunetv2/batch_running/release_trainings
2024-02-21T09:44:15,813   copying nnunetv2/batch_running/release_trainings/__init__.py -> build/lib/nnunetv2/batch_running/release_trainings
2024-02-21T09:44:15,815   creating build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1
2024-02-21T09:44:15,816   copying nnunetv2/batch_running/release_trainings/nnunetv2_v1/collect_results.py -> build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1
2024-02-21T09:44:15,818   copying nnunetv2/batch_running/release_trainings/nnunetv2_v1/generate_lsf_commands.py -> build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1
2024-02-21T09:44:15,820   copying nnunetv2/batch_running/release_trainings/nnunetv2_v1/__init__.py -> build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1
2024-02-21T09:44:15,821   creating build/lib/nnunetv2/experiment_planning/dataset_fingerprint
2024-02-21T09:44:15,822   copying nnunetv2/experiment_planning/dataset_fingerprint/__init__.py -> build/lib/nnunetv2/experiment_planning/dataset_fingerprint
2024-02-21T09:44:15,824   copying nnunetv2/experiment_planning/dataset_fingerprint/fingerprint_extractor.py -> build/lib/nnunetv2/experiment_planning/dataset_fingerprint
2024-02-21T09:44:15,826   creating build/lib/nnunetv2/experiment_planning/experiment_planners
2024-02-21T09:44:15,827   copying nnunetv2/experiment_planning/experiment_planners/resencUNet_planner.py -> build/lib/nnunetv2/experiment_planning/experiment_planners
2024-02-21T09:44:15,829   copying nnunetv2/experiment_planning/experiment_planners/default_experiment_planner.py -> build/lib/nnunetv2/experiment_planning/experiment_planners
2024-02-21T09:44:15,831   copying nnunetv2/experiment_planning/experiment_planners/__init__.py -> build/lib/nnunetv2/experiment_planning/experiment_planners
2024-02-21T09:44:15,832   copying nnunetv2/experiment_planning/experiment_planners/network_topology.py -> build/lib/nnunetv2/experiment_planning/experiment_planners
2024-02-21T09:44:15,835   creating build/lib/nnunetv2/experiment_planning/plans_for_pretraining
2024-02-21T09:44:15,836   copying nnunetv2/experiment_planning/plans_for_pretraining/move_plans_between_datasets.py -> build/lib/nnunetv2/experiment_planning/plans_for_pretraining
2024-02-21T09:44:15,838   copying nnunetv2/experiment_planning/plans_for_pretraining/__init__.py -> build/lib/nnunetv2/experiment_planning/plans_for_pretraining
2024-02-21T09:44:15,839   creating build/lib/nnunetv2/training/loss
2024-02-21T09:44:15,840   copying nnunetv2/training/loss/deep_supervision.py -> build/lib/nnunetv2/training/loss
2024-02-21T09:44:15,842   copying nnunetv2/training/loss/dice.py -> build/lib/nnunetv2/training/loss
2024-02-21T09:44:15,844   copying nnunetv2/training/loss/__init__.py -> build/lib/nnunetv2/training/loss
2024-02-21T09:44:15,845   copying nnunetv2/training/loss/compound_losses.py -> build/lib/nnunetv2/training/loss
2024-02-21T09:44:15,847   copying nnunetv2/training/loss/robust_ce_loss.py -> build/lib/nnunetv2/training/loss
2024-02-21T09:44:15,850   creating build/lib/nnunetv2/training/logging
2024-02-21T09:44:15,851   copying nnunetv2/training/logging/nnunet_logger.py -> build/lib/nnunetv2/training/logging
2024-02-21T09:44:15,853   copying nnunetv2/training/logging/__init__.py -> build/lib/nnunetv2/training/logging
2024-02-21T09:44:15,855   creating build/lib/nnunetv2/training/nnUNetTrainer
2024-02-21T09:44:15,856   copying nnunetv2/training/nnUNetTrainer/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer
2024-02-21T09:44:15,857   copying nnunetv2/training/nnUNetTrainer/nnUNetTrainer.py -> build/lib/nnunetv2/training/nnUNetTrainer
2024-02-21T09:44:15,860   creating build/lib/nnunetv2/training/data_augmentation
2024-02-21T09:44:15,861   copying nnunetv2/training/data_augmentation/compute_initial_patch_size.py -> build/lib/nnunetv2/training/data_augmentation
2024-02-21T09:44:15,863   copying nnunetv2/training/data_augmentation/__init__.py -> build/lib/nnunetv2/training/data_augmentation
2024-02-21T09:44:15,865   creating build/lib/nnunetv2/training/dataloading
2024-02-21T09:44:15,866   copying nnunetv2/training/dataloading/base_data_loader.py -> build/lib/nnunetv2/training/dataloading
2024-02-21T09:44:15,868   copying nnunetv2/training/dataloading/__init__.py -> build/lib/nnunetv2/training/dataloading
2024-02-21T09:44:15,870   copying nnunetv2/training/dataloading/data_loader_2d.py -> build/lib/nnunetv2/training/dataloading
2024-02-21T09:44:15,872   copying nnunetv2/training/dataloading/utils.py -> build/lib/nnunetv2/training/dataloading
2024-02-21T09:44:15,873   copying nnunetv2/training/dataloading/data_loader_3d.py -> build/lib/nnunetv2/training/dataloading
2024-02-21T09:44:15,875   copying nnunetv2/training/dataloading/nnunet_dataset.py -> build/lib/nnunetv2/training/dataloading
2024-02-21T09:44:15,877   creating build/lib/nnunetv2/training/lr_scheduler
2024-02-21T09:44:15,878   copying nnunetv2/training/lr_scheduler/polylr.py -> build/lib/nnunetv2/training/lr_scheduler
2024-02-21T09:44:15,879   copying nnunetv2/training/lr_scheduler/__init__.py -> build/lib/nnunetv2/training/lr_scheduler
2024-02-21T09:44:15,881   creating build/lib/nnunetv2/training/nnUNetTrainer/variants
2024-02-21T09:44:15,882   copying nnunetv2/training/nnUNetTrainer/variants/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants
2024-02-21T09:44:15,884   creating build/lib/nnunetv2/training/nnUNetTrainer/variants/loss
2024-02-21T09:44:15,885   copying nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerDiceLoss.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/loss
2024-02-21T09:44:15,886   copying nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerCELoss.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/loss
2024-02-21T09:44:15,888   copying nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerTopkLoss.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/loss
2024-02-21T09:44:15,890   copying nnunetv2/training/nnUNetTrainer/variants/loss/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/loss
2024-02-21T09:44:15,892   creating build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking
2024-02-21T09:44:15,893   copying nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs_noDataLoading.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking
2024-02-21T09:44:15,895   copying nnunetv2/training/nnUNetTrainer/variants/benchmarking/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking
2024-02-21T09:44:15,896   copying nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking
2024-02-21T09:44:15,898   creating build/lib/nnunetv2/training/nnUNetTrainer/variants/lr_schedule
2024-02-21T09:44:15,899   copying nnunetv2/training/nnUNetTrainer/variants/lr_schedule/nnUNetTrainerCosAnneal.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/lr_schedule
2024-02-21T09:44:15,901   copying nnunetv2/training/nnUNetTrainer/variants/lr_schedule/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/lr_schedule
2024-02-21T09:44:15,902   creating build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture
2024-02-21T09:44:15,903   copying nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerNoDeepSupervision.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture
2024-02-21T09:44:15,906   copying nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerBN.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture
2024-02-21T09:44:15,908   copying nnunetv2/training/nnUNetTrainer/variants/network_architecture/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture
2024-02-21T09:44:15,910   creating build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation
2024-02-21T09:44:15,911   copying nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDA5.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation
2024-02-21T09:44:15,913   copying nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDAOrd0.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation
2024-02-21T09:44:15,915   copying nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoMirroring.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation
2024-02-21T09:44:15,917   copying nnunetv2/training/nnUNetTrainer/variants/data_augmentation/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation
2024-02-21T09:44:15,918   copying nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoDA.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation
2024-02-21T09:44:15,921   creating build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length
2024-02-21T09:44:15,922   copying nnunetv2/training/nnUNetTrainer/variants/training_length/nnUNetTrainer_Xepochs_NoMirroring.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length
2024-02-21T09:44:15,923   copying nnunetv2/training/nnUNetTrainer/variants/training_length/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length
2024-02-21T09:44:15,925   copying nnunetv2/training/nnUNetTrainer/variants/training_length/nnUNetTrainer_Xepochs.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length
2024-02-21T09:44:15,927   creating build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer
2024-02-21T09:44:15,928   copying nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdam.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer
2024-02-21T09:44:15,930   copying nnunetv2/training/nnUNetTrainer/variants/optimizer/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer
2024-02-21T09:44:15,931   copying nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdan.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer
2024-02-21T09:44:15,933   creating build/lib/nnunetv2/training/nnUNetTrainer/variants/sampling
2024-02-21T09:44:15,934   copying nnunetv2/training/nnUNetTrainer/variants/sampling/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/sampling
2024-02-21T09:44:15,936   copying nnunetv2/training/nnUNetTrainer/variants/sampling/nnUNetTrainer_probabilisticOversampling.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/sampling
2024-02-21T09:44:15,938   creating build/lib/nnunetv2/training/data_augmentation/custom_transforms
2024-02-21T09:44:15,939   copying nnunetv2/training/data_augmentation/custom_transforms/region_based_training.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms
2024-02-21T09:44:15,941   copying nnunetv2/training/data_augmentation/custom_transforms/cascade_transforms.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms
2024-02-21T09:44:15,943   copying nnunetv2/training/data_augmentation/custom_transforms/manipulating_data_dict.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms
2024-02-21T09:44:15,945   copying nnunetv2/training/data_augmentation/custom_transforms/limited_length_multithreaded_augmenter.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms
2024-02-21T09:44:15,947   copying nnunetv2/training/data_augmentation/custom_transforms/masking.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms
2024-02-21T09:44:15,949   copying nnunetv2/training/data_augmentation/custom_transforms/deep_supervision_donwsampling.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms
2024-02-21T09:44:15,950   copying nnunetv2/training/data_augmentation/custom_transforms/__init__.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms
2024-02-21T09:44:15,952   copying nnunetv2/training/data_augmentation/custom_transforms/transforms_for_dummy_2d.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms
2024-02-21T09:44:15,954   creating build/lib/nnunetv2/preprocessing/resampling
2024-02-21T09:44:15,955   copying nnunetv2/preprocessing/resampling/default_resampling.py -> build/lib/nnunetv2/preprocessing/resampling
2024-02-21T09:44:15,957   copying nnunetv2/preprocessing/resampling/__init__.py -> build/lib/nnunetv2/preprocessing/resampling
2024-02-21T09:44:15,959   copying nnunetv2/preprocessing/resampling/utils.py -> build/lib/nnunetv2/preprocessing/resampling
2024-02-21T09:44:15,961   creating build/lib/nnunetv2/preprocessing/preprocessors
2024-02-21T09:44:15,962   copying nnunetv2/preprocessing/preprocessors/default_preprocessor.py -> build/lib/nnunetv2/preprocessing/preprocessors
2024-02-21T09:44:15,964   copying nnunetv2/preprocessing/preprocessors/__init__.py -> build/lib/nnunetv2/preprocessing/preprocessors
2024-02-21T09:44:15,966   creating build/lib/nnunetv2/preprocessing/normalization
2024-02-21T09:44:15,966   copying nnunetv2/preprocessing/normalization/default_normalization_schemes.py -> build/lib/nnunetv2/preprocessing/normalization
2024-02-21T09:44:15,968   copying nnunetv2/preprocessing/normalization/map_channel_name_to_normalization.py -> build/lib/nnunetv2/preprocessing/normalization
2024-02-21T09:44:15,970   copying nnunetv2/preprocessing/normalization/__init__.py -> build/lib/nnunetv2/preprocessing/normalization
2024-02-21T09:44:15,971   creating build/lib/nnunetv2/preprocessing/cropping
2024-02-21T09:44:15,972   copying nnunetv2/preprocessing/cropping/__init__.py -> build/lib/nnunetv2/preprocessing/cropping
2024-02-21T09:44:15,974   copying nnunetv2/preprocessing/cropping/cropping.py -> build/lib/nnunetv2/preprocessing/cropping
2024-02-21T09:44:15,976   creating build/lib/nnunetv2/tests/integration_tests
2024-02-21T09:44:15,977   copying nnunetv2/tests/integration_tests/add_lowres_and_cascade.py -> build/lib/nnunetv2/tests/integration_tests
2024-02-21T09:44:15,978   copying nnunetv2/tests/integration_tests/__init__.py -> build/lib/nnunetv2/tests/integration_tests
2024-02-21T09:44:15,980   copying nnunetv2/tests/integration_tests/cleanup_integration_test.py -> build/lib/nnunetv2/tests/integration_tests
2024-02-21T09:44:15,981   copying nnunetv2/tests/integration_tests/run_integration_test_bestconfig_inference.py -> build/lib/nnunetv2/tests/integration_tests
2024-02-21T09:44:15,984   creating build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests
2024-02-21T09:44:15,985   copying nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset999_IntegrationTest_Hippocampus.py -> build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests
2024-02-21T09:44:15,986   copying nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset998_IntegrationTest_Hippocampus_ignore.py -> build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests
2024-02-21T09:44:15,988   copying nnunetv2/dataset_conversion/datasets_for_integration_tests/__init__.py -> build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests
2024-02-21T09:44:15,989   copying nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset997_IntegrationTest_Hippocampus_regions.py -> build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests
2024-02-21T09:44:15,991   copying nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset996_IntegrationTest_Hippocampus_regions_ignore.py -> build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests
2024-02-21T09:44:15,993   creating build/lib/nnunetv2/utilities/plans_handling
2024-02-21T09:44:15,994   copying nnunetv2/utilities/plans_handling/plans_handler.py -> build/lib/nnunetv2/utilities/plans_handling
2024-02-21T09:44:15,996   copying nnunetv2/utilities/plans_handling/__init__.py -> build/lib/nnunetv2/utilities/plans_handling
2024-02-21T09:44:15,998   creating build/lib/nnunetv2/utilities/label_handling
2024-02-21T09:44:15,999   copying nnunetv2/utilities/label_handling/label_handling.py -> build/lib/nnunetv2/utilities/label_handling
2024-02-21T09:44:16,001   copying nnunetv2/utilities/label_handling/__init__.py -> build/lib/nnunetv2/utilities/label_handling
2024-02-21T09:44:16,003   running egg_info
2024-02-21T09:44:16,008   writing nnunetv2.egg-info/PKG-INFO
2024-02-21T09:44:16,013   writing dependency_links to nnunetv2.egg-info/dependency_links.txt
2024-02-21T09:44:16,015   writing entry points to nnunetv2.egg-info/entry_points.txt
2024-02-21T09:44:16,017   writing requirements to nnunetv2.egg-info/requires.txt
2024-02-21T09:44:16,018   writing top-level names to nnunetv2.egg-info/top_level.txt
2024-02-21T09:44:16,058   reading manifest file 'nnunetv2.egg-info/SOURCES.txt'
2024-02-21T09:44:16,063   adding license file 'LICENSE'
2024-02-21T09:44:16,071   writing manifest file 'nnunetv2.egg-info/SOURCES.txt'
2024-02-21T09:44:16,115   installing to build/bdist.linux-armv7l/wheel
2024-02-21T09:44:16,116   running install
2024-02-21T09:44:16,139   running install_lib
2024-02-21T09:44:16,144   creating build/bdist.linux-armv7l
2024-02-21T09:44:16,144   creating build/bdist.linux-armv7l/wheel
2024-02-21T09:44:16,146   creating build/bdist.linux-armv7l/wheel/nnunetv2
2024-02-21T09:44:16,147   creating build/bdist.linux-armv7l/wheel/nnunetv2/evaluation
2024-02-21T09:44:16,148   copying build/lib/nnunetv2/evaluation/accumulate_cv_results.py -> build/bdist.linux-armv7l/wheel/nnunetv2/evaluation
2024-02-21T09:44:16,150   copying build/lib/nnunetv2/evaluation/find_best_configuration.py -> build/bdist.linux-armv7l/wheel/nnunetv2/evaluation
2024-02-21T09:44:16,152   copying build/lib/nnunetv2/evaluation/evaluate_predictions.py -> build/bdist.linux-armv7l/wheel/nnunetv2/evaluation
2024-02-21T09:44:16,154   copying build/lib/nnunetv2/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/evaluation
2024-02-21T09:44:16,156   creating build/bdist.linux-armv7l/wheel/nnunetv2/inference
2024-02-21T09:44:16,157   copying build/lib/nnunetv2/inference/predict_from_raw_data.py -> build/bdist.linux-armv7l/wheel/nnunetv2/inference
2024-02-21T09:44:16,160   copying build/lib/nnunetv2/inference/examples.py -> build/bdist.linux-armv7l/wheel/nnunetv2/inference
2024-02-21T09:44:16,162   copying build/lib/nnunetv2/inference/sliding_window_prediction.py -> build/bdist.linux-armv7l/wheel/nnunetv2/inference
2024-02-21T09:44:16,164   copying build/lib/nnunetv2/inference/export_prediction.py -> build/bdist.linux-armv7l/wheel/nnunetv2/inference
2024-02-21T09:44:16,166   copying build/lib/nnunetv2/inference/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/inference
2024-02-21T09:44:16,167   copying build/lib/nnunetv2/inference/data_iterators.py -> build/bdist.linux-armv7l/wheel/nnunetv2/inference
2024-02-21T09:44:16,170   copying build/lib/nnunetv2/configuration.py -> build/bdist.linux-armv7l/wheel/nnunetv2
2024-02-21T09:44:16,172   creating build/bdist.linux-armv7l/wheel/nnunetv2/ensembling
2024-02-21T09:44:16,172   copying build/lib/nnunetv2/ensembling/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/ensembling
2024-02-21T09:44:16,174   copying build/lib/nnunetv2/ensembling/ensemble.py -> build/bdist.linux-armv7l/wheel/nnunetv2/ensembling
2024-02-21T09:44:16,177   creating build/bdist.linux-armv7l/wheel/nnunetv2/batch_running
2024-02-21T09:44:16,178   copying build/lib/nnunetv2/batch_running/collect_results_custom_Decathlon.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running
2024-02-21T09:44:16,180   creating build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/benchmarking
2024-02-21T09:44:16,181   copying build/lib/nnunetv2/batch_running/benchmarking/generate_benchmarking_commands.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/benchmarking
2024-02-21T09:44:16,183   copying build/lib/nnunetv2/batch_running/benchmarking/summarize_benchmark_results.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/benchmarking
2024-02-21T09:44:16,185   copying build/lib/nnunetv2/batch_running/benchmarking/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/benchmarking
2024-02-21T09:44:16,187   creating build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/release_trainings
2024-02-21T09:44:16,188   copying build/lib/nnunetv2/batch_running/release_trainings/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/release_trainings
2024-02-21T09:44:16,190   creating build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/release_trainings/nnunetv2_v1
2024-02-21T09:44:16,191   copying build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1/collect_results.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/release_trainings/nnunetv2_v1
2024-02-21T09:44:16,193   copying build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1/generate_lsf_commands.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/release_trainings/nnunetv2_v1
2024-02-21T09:44:16,195   copying build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/release_trainings/nnunetv2_v1
2024-02-21T09:44:16,196   copying build/lib/nnunetv2/batch_running/generate_lsf_runs_customDecathlon.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running
2024-02-21T09:44:16,198   copying build/lib/nnunetv2/batch_running/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running
2024-02-21T09:44:16,199   copying build/lib/nnunetv2/batch_running/collect_results_custom_Decathlon_2d.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running
2024-02-21T09:44:16,201   creating build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning
2024-02-21T09:44:16,202   copying build/lib/nnunetv2/experiment_planning/plan_and_preprocess_api.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning
2024-02-21T09:44:16,205   creating build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/dataset_fingerprint
2024-02-21T09:44:16,205   copying build/lib/nnunetv2/experiment_planning/dataset_fingerprint/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/dataset_fingerprint
2024-02-21T09:44:16,207   copying build/lib/nnunetv2/experiment_planning/dataset_fingerprint/fingerprint_extractor.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/dataset_fingerprint
2024-02-21T09:44:16,210   creating build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners
2024-02-21T09:44:16,210   copying build/lib/nnunetv2/experiment_planning/experiment_planners/resencUNet_planner.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners
2024-02-21T09:44:16,212   copying build/lib/nnunetv2/experiment_planning/experiment_planners/default_experiment_planner.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners
2024-02-21T09:44:16,215   copying build/lib/nnunetv2/experiment_planning/experiment_planners/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners
2024-02-21T09:44:16,216   copying build/lib/nnunetv2/experiment_planning/experiment_planners/network_topology.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners
2024-02-21T09:44:16,219   creating build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/plans_for_pretraining
2024-02-21T09:44:16,220   copying build/lib/nnunetv2/experiment_planning/plans_for_pretraining/move_plans_between_datasets.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/plans_for_pretraining
2024-02-21T09:44:16,222   copying build/lib/nnunetv2/experiment_planning/plans_for_pretraining/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/plans_for_pretraining
2024-02-21T09:44:16,223   copying build/lib/nnunetv2/experiment_planning/plan_and_preprocess_entrypoints.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning
2024-02-21T09:44:16,226   copying build/lib/nnunetv2/experiment_planning/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning
2024-02-21T09:44:16,227   copying build/lib/nnunetv2/experiment_planning/verify_dataset_integrity.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning
2024-02-21T09:44:16,230   creating build/bdist.linux-armv7l/wheel/nnunetv2/postprocessing
2024-02-21T09:44:16,231   copying build/lib/nnunetv2/postprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/postprocessing
2024-02-21T09:44:16,233   copying build/lib/nnunetv2/postprocessing/remove_connected_components.py -> build/bdist.linux-armv7l/wheel/nnunetv2/postprocessing
2024-02-21T09:44:16,236   creating build/bdist.linux-armv7l/wheel/nnunetv2/model_sharing
2024-02-21T09:44:16,236   copying build/lib/nnunetv2/model_sharing/model_download.py -> build/bdist.linux-armv7l/wheel/nnunetv2/model_sharing
2024-02-21T09:44:16,238   copying build/lib/nnunetv2/model_sharing/entry_points.py -> build/bdist.linux-armv7l/wheel/nnunetv2/model_sharing
2024-02-21T09:44:16,240   copying build/lib/nnunetv2/model_sharing/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/model_sharing
2024-02-21T09:44:16,243   copying build/lib/nnunetv2/model_sharing/model_export.py -> build/bdist.linux-armv7l/wheel/nnunetv2/model_sharing
2024-02-21T09:44:16,245   copying build/lib/nnunetv2/model_sharing/model_import.py -> build/bdist.linux-armv7l/wheel/nnunetv2/model_sharing
2024-02-21T09:44:16,247   creating build/bdist.linux-armv7l/wheel/nnunetv2/training
2024-02-21T09:44:16,248   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/loss
2024-02-21T09:44:16,249   copying build/lib/nnunetv2/training/loss/deep_supervision.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/loss
2024-02-21T09:44:16,251   copying build/lib/nnunetv2/training/loss/dice.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/loss
2024-02-21T09:44:16,253   copying build/lib/nnunetv2/training/loss/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/loss
2024-02-21T09:44:16,255   copying build/lib/nnunetv2/training/loss/compound_losses.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/loss
2024-02-21T09:44:16,257   copying build/lib/nnunetv2/training/loss/robust_ce_loss.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/loss
2024-02-21T09:44:16,259   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/logging
2024-02-21T09:44:16,259   copying build/lib/nnunetv2/training/logging/nnunet_logger.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/logging
2024-02-21T09:44:16,262   copying build/lib/nnunetv2/training/logging/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/logging
2024-02-21T09:44:16,264   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer
2024-02-21T09:44:16,265   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants
2024-02-21T09:44:16,267   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/loss
2024-02-21T09:44:16,268   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerDiceLoss.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/loss
2024-02-21T09:44:16,269   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerCELoss.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/loss
2024-02-21T09:44:16,271   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerTopkLoss.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/loss
2024-02-21T09:44:16,273   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/loss/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/loss
2024-02-21T09:44:16,275   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/benchmarking
2024-02-21T09:44:16,276   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs_noDataLoading.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/benchmarking
2024-02-21T09:44:16,278   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/benchmarking
2024-02-21T09:44:16,279   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/benchmarking
2024-02-21T09:44:16,281   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/lr_schedule
2024-02-21T09:44:16,282   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/lr_schedule/nnUNetTrainerCosAnneal.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/lr_schedule
2024-02-21T09:44:16,284   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/lr_schedule/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/lr_schedule
2024-02-21T09:44:16,286   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/network_architecture
2024-02-21T09:44:16,287   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerNoDeepSupervision.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/network_architecture
2024-02-21T09:44:16,289   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerBN.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/network_architecture
2024-02-21T09:44:16,291   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/network_architecture
2024-02-21T09:44:16,292   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/data_augmentation
2024-02-21T09:44:16,293   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDA5.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/data_augmentation
2024-02-21T09:44:16,296   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDAOrd0.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/data_augmentation
2024-02-21T09:44:16,298   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoMirroring.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/data_augmentation
2024-02-21T09:44:16,300   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/data_augmentation
2024-02-21T09:44:16,301   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoDA.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/data_augmentation
2024-02-21T09:44:16,303   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/training_length
2024-02-21T09:44:16,304   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length/nnUNetTrainer_Xepochs_NoMirroring.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/training_length
2024-02-21T09:44:16,306   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/training_length
2024-02-21T09:44:16,307   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length/nnUNetTrainer_Xepochs.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/training_length
2024-02-21T09:44:16,309   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants
2024-02-21T09:44:16,311   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/optimizer
2024-02-21T09:44:16,312   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdam.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/optimizer
2024-02-21T09:44:16,314   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/optimizer
2024-02-21T09:44:16,315   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdan.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/optimizer
2024-02-21T09:44:16,318   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/sampling
2024-02-21T09:44:16,319   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/sampling/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/sampling
2024-02-21T09:44:16,320   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/sampling/nnUNetTrainer_probabilisticOversampling.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/sampling
2024-02-21T09:44:16,322   copying build/lib/nnunetv2/training/nnUNetTrainer/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer
2024-02-21T09:44:16,324   copying build/lib/nnunetv2/training/nnUNetTrainer/nnUNetTrainer.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer
2024-02-21T09:44:16,327   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation
2024-02-21T09:44:16,328   copying build/lib/nnunetv2/training/data_augmentation/compute_initial_patch_size.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation
2024-02-21T09:44:16,330   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms
2024-02-21T09:44:16,331   copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/region_based_training.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms
2024-02-21T09:44:16,333   copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/cascade_transforms.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms
2024-02-21T09:44:16,336   copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/manipulating_data_dict.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms
2024-02-21T09:44:16,337   copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/limited_length_multithreaded_augmenter.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms
2024-02-21T09:44:16,339   copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/masking.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms
2024-02-21T09:44:16,341   copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/deep_supervision_donwsampling.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms
2024-02-21T09:44:16,342   copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms
2024-02-21T09:44:16,344   copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/transforms_for_dummy_2d.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms
2024-02-21T09:44:16,346   copying build/lib/nnunetv2/training/data_augmentation/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation
2024-02-21T09:44:16,348   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading
2024-02-21T09:44:16,349   copying build/lib/nnunetv2/training/dataloading/base_data_loader.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading
2024-02-21T09:44:16,351   copying build/lib/nnunetv2/training/dataloading/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading
2024-02-21T09:44:16,352   copying build/lib/nnunetv2/training/dataloading/data_loader_2d.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading
2024-02-21T09:44:16,355   copying build/lib/nnunetv2/training/dataloading/utils.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading
2024-02-21T09:44:16,356   copying build/lib/nnunetv2/training/dataloading/data_loader_3d.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading
2024-02-21T09:44:16,358   copying build/lib/nnunetv2/training/dataloading/nnunet_dataset.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading
2024-02-21T09:44:16,361   copying build/lib/nnunetv2/training/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training
2024-02-21T09:44:16,362   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/lr_scheduler
2024-02-21T09:44:16,363   copying build/lib/nnunetv2/training/lr_scheduler/polylr.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/lr_scheduler
2024-02-21T09:44:16,365   copying build/lib/nnunetv2/training/lr_scheduler/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/lr_scheduler
2024-02-21T09:44:16,367   creating build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing
2024-02-21T09:44:16,368   creating build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/resampling
2024-02-21T09:44:16,369   copying build/lib/nnunetv2/preprocessing/resampling/default_resampling.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/resampling
2024-02-21T09:44:16,371   copying build/lib/nnunetv2/preprocessing/resampling/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/resampling
2024-02-21T09:44:16,373   copying build/lib/nnunetv2/preprocessing/resampling/utils.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/resampling
2024-02-21T09:44:16,375   creating build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/preprocessors
2024-02-21T09:44:16,376   copying build/lib/nnunetv2/preprocessing/preprocessors/default_preprocessor.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/preprocessors
2024-02-21T09:44:16,378   copying build/lib/nnunetv2/preprocessing/preprocessors/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/preprocessors
2024-02-21T09:44:16,380   copying build/lib/nnunetv2/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing
2024-02-21T09:44:16,381   creating build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/normalization
2024-02-21T09:44:16,382   copying build/lib/nnunetv2/preprocessing/normalization/default_normalization_schemes.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/normalization
2024-02-21T09:44:16,385   copying build/lib/nnunetv2/preprocessing/normalization/map_channel_name_to_normalization.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/normalization
2024-02-21T09:44:16,386   copying build/lib/nnunetv2/preprocessing/normalization/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/normalization
2024-02-21T09:44:16,389   creating build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/cropping
2024-02-21T09:44:16,390   copying build/lib/nnunetv2/preprocessing/cropping/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/cropping
2024-02-21T09:44:16,392   copying build/lib/nnunetv2/preprocessing/cropping/cropping.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/cropping
2024-02-21T09:44:16,394   creating build/bdist.linux-armv7l/wheel/nnunetv2/run
2024-02-21T09:44:16,395   copying build/lib/nnunetv2/run/load_pretrained_weights.py -> build/bdist.linux-armv7l/wheel/nnunetv2/run
2024-02-21T09:44:16,397   copying build/lib/nnunetv2/run/run_training.py -> build/bdist.linux-armv7l/wheel/nnunetv2/run
2024-02-21T09:44:16,400   copying build/lib/nnunetv2/run/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/run
2024-02-21T09:44:16,401   copying build/lib/nnunetv2/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2
2024-02-21T09:44:16,403   creating build/bdist.linux-armv7l/wheel/nnunetv2/tests
2024-02-21T09:44:16,405   creating build/bdist.linux-armv7l/wheel/nnunetv2/tests/integration_tests
2024-02-21T09:44:16,406   copying build/lib/nnunetv2/tests/integration_tests/add_lowres_and_cascade.py -> build/bdist.linux-armv7l/wheel/nnunetv2/tests/integration_tests
2024-02-21T09:44:16,408   copying build/lib/nnunetv2/tests/integration_tests/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/tests/integration_tests
2024-02-21T09:44:16,409   copying build/lib/nnunetv2/tests/integration_tests/cleanup_integration_test.py -> build/bdist.linux-armv7l/wheel/nnunetv2/tests/integration_tests
2024-02-21T09:44:16,411   copying build/lib/nnunetv2/tests/integration_tests/run_integration_test_bestconfig_inference.py -> build/bdist.linux-armv7l/wheel/nnunetv2/tests/integration_tests
2024-02-21T09:44:16,413   copying build/lib/nnunetv2/tests/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/tests
2024-02-21T09:44:16,415   copying build/lib/nnunetv2/paths.py -> build/bdist.linux-armv7l/wheel/nnunetv2
2024-02-21T09:44:16,417   creating build/bdist.linux-armv7l/wheel/nnunetv2/imageio
2024-02-21T09:44:16,418   copying build/lib/nnunetv2/imageio/tif_reader_writer.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio
2024-02-21T09:44:16,420   copying build/lib/nnunetv2/imageio/base_reader_writer.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio
2024-02-21T09:44:16,422   copying build/lib/nnunetv2/imageio/natural_image_reager_writer.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio
2024-02-21T09:44:16,424   copying build/lib/nnunetv2/imageio/simpleitk_reader_writer.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio
2024-02-21T09:44:16,426   copying build/lib/nnunetv2/imageio/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio
2024-02-21T09:44:16,427   copying build/lib/nnunetv2/imageio/nibabel_reader_writer.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio
2024-02-21T09:44:16,430   copying build/lib/nnunetv2/imageio/reader_writer_registry.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio
2024-02-21T09:44:16,432   creating build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion
2024-02-21T09:44:16,433   copying build/lib/nnunetv2/dataset_conversion/Dataset219_Amos2022_task2.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion
2024-02-21T09:44:16,435   copying build/lib/nnunetv2/dataset_conversion/generate_dataset_json.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion
2024-02-21T09:44:16,437   copying build/lib/nnunetv2/dataset_conversion/Dataset220_KiTS2023.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion
2024-02-21T09:44:16,439   copying build/lib/nnunetv2/dataset_conversion/Dataset137_BraTS21.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion
2024-02-21T09:44:16,441   copying build/lib/nnunetv2/dataset_conversion/Dataset073_Fluo_C3DH_A549_SIM.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion
2024-02-21T09:44:16,443   copying build/lib/nnunetv2/dataset_conversion/Dataset221_AutoPETII_2023.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion
2024-02-21T09:44:16,446   copying build/lib/nnunetv2/dataset_conversion/Dataset114_MNMs.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion
2024-02-21T09:44:16,448   copying build/lib/nnunetv2/dataset_conversion/Dataset988_dummyDataset4.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion
2024-02-21T09:44:16,450   creating build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion/datasets_for_integration_tests
2024-02-21T09:44:16,451   copying build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset999_IntegrationTest_Hippocampus.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion/datasets_for_integration_tests
2024-02-21T09:44:16,453   copying build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset998_IntegrationTest_Hippocampus_ignore.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion/datasets_for_integration_tests
2024-02-21T09:44:16,455   copying build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion/datasets_for_integration_tests
2024-02-21T09:44:16,456   copying build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset997_IntegrationTest_Hippocampus_regions.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion/datasets_for_integration_tests
2024-02-21T09:44:16,459   copying build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset996_IntegrationTest_Hippocampus_regions_ignore.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion/datasets_for_integration_tests
2024-02-21T09:44:16,461   copying build/lib/nnunetv2/dataset_conversion/convert_MSD_dataset.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion
2024-02-21T09:44:16,463   copying build/lib/nnunetv2/dataset_conversion/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion
2024-02-21T09:44:16,464   copying build/lib/nnunetv2/dataset_conversion/Dataset115_EMIDEC.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion
2024-02-21T09:44:16,466   copying build/lib/nnunetv2/dataset_conversion/Dataset120_RoadSegmentation.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion
2024-02-21T09:44:16,468   copying build/lib/nnunetv2/dataset_conversion/Dataset027_ACDC.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion
2024-02-21T09:44:16,470   copying build/lib/nnunetv2/dataset_conversion/Dataset218_Amos2022_task1.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion
2024-02-21T09:44:16,472   copying build/lib/nnunetv2/dataset_conversion/convert_raw_dataset_from_old_nnunet_format.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion
2024-02-21T09:44:16,474   creating build/bdist.linux-armv7l/wheel/nnunetv2/utilities
2024-02-21T09:44:16,476   creating build/bdist.linux-armv7l/wheel/nnunetv2/utilities/plans_handling
2024-02-21T09:44:16,477   copying build/lib/nnunetv2/utilities/plans_handling/plans_handler.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities/plans_handling
2024-02-21T09:44:16,479   copying build/lib/nnunetv2/utilities/plans_handling/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities/plans_handling
2024-02-21T09:44:16,481   copying build/lib/nnunetv2/utilities/helpers.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities
2024-02-21T09:44:16,482   copying build/lib/nnunetv2/utilities/find_class_by_name.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities
2024-02-21T09:44:16,485   copying build/lib/nnunetv2/utilities/get_network_from_plans.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities
2024-02-21T09:44:16,487   copying build/lib/nnunetv2/utilities/json_export.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities
2024-02-21T09:44:16,488   copying build/lib/nnunetv2/utilities/collate_outputs.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities
2024-02-21T09:44:16,491   creating build/bdist.linux-armv7l/wheel/nnunetv2/utilities/label_handling
2024-02-21T09:44:16,492   copying build/lib/nnunetv2/utilities/label_handling/label_handling.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities/label_handling
2024-02-21T09:44:16,495   copying build/lib/nnunetv2/utilities/label_handling/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities/label_handling
2024-02-21T09:44:16,497   copying build/lib/nnunetv2/utilities/file_path_utilities.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities
2024-02-21T09:44:16,499   copying build/lib/nnunetv2/utilities/ddp_allgather.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities
2024-02-21T09:44:16,501   copying build/lib/nnunetv2/utilities/default_n_proc_DA.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities
2024-02-21T09:44:16,503   copying build/lib/nnunetv2/utilities/network_initialization.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities
2024-02-21T09:44:16,505   copying build/lib/nnunetv2/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities
2024-02-21T09:44:16,507   copying build/lib/nnunetv2/utilities/utils.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities
2024-02-21T09:44:16,508   copying build/lib/nnunetv2/utilities/overlay_plots.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities
2024-02-21T09:44:16,511   copying build/lib/nnunetv2/utilities/dataset_name_id_conversion.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities
2024-02-21T09:44:16,513   running install_egg_info
2024-02-21T09:44:16,518   Copying nnunetv2.egg-info to build/bdist.linux-armv7l/wheel/nnunetv2-2.2.2-py3.11.egg-info
2024-02-21T09:44:16,532   running install_scripts
2024-02-21T09:44:16,557   creating build/bdist.linux-armv7l/wheel/nnunetv2-2.2.2.dist-info/WHEEL
2024-02-21T09:44:16,559   creating '/tmp/pip-wheel-wv207u1j/.tmp-h82i4f27/nnunetv2-2.2.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-02-21T09:44:16,562   adding 'nnunetv2/__init__.py'
2024-02-21T09:44:16,563   adding 'nnunetv2/configuration.py'
2024-02-21T09:44:16,564   adding 'nnunetv2/paths.py'
2024-02-21T09:44:16,566   adding 'nnunetv2/batch_running/__init__.py'
2024-02-21T09:44:16,568   adding 'nnunetv2/batch_running/collect_results_custom_Decathlon.py'
2024-02-21T09:44:16,569   adding 'nnunetv2/batch_running/collect_results_custom_Decathlon_2d.py'
2024-02-21T09:44:16,570   adding 'nnunetv2/batch_running/generate_lsf_runs_customDecathlon.py'
2024-02-21T09:44:16,572   adding 'nnunetv2/batch_running/benchmarking/__init__.py'
2024-02-21T09:44:16,573   adding 'nnunetv2/batch_running/benchmarking/generate_benchmarking_commands.py'
2024-02-21T09:44:16,575   adding 'nnunetv2/batch_running/benchmarking/summarize_benchmark_results.py'
2024-02-21T09:44:16,576   adding 'nnunetv2/batch_running/release_trainings/__init__.py'
2024-02-21T09:44:16,578   adding 'nnunetv2/batch_running/release_trainings/nnunetv2_v1/__init__.py'
2024-02-21T09:44:16,580   adding 'nnunetv2/batch_running/release_trainings/nnunetv2_v1/collect_results.py'
2024-02-21T09:44:16,581   adding 'nnunetv2/batch_running/release_trainings/nnunetv2_v1/generate_lsf_commands.py'
2024-02-21T09:44:16,583   adding 'nnunetv2/dataset_conversion/Dataset027_ACDC.py'
2024-02-21T09:44:16,585   adding 'nnunetv2/dataset_conversion/Dataset073_Fluo_C3DH_A549_SIM.py'
2024-02-21T09:44:16,587   adding 'nnunetv2/dataset_conversion/Dataset114_MNMs.py'
2024-02-21T09:44:16,588   adding 'nnunetv2/dataset_conversion/Dataset115_EMIDEC.py'
2024-02-21T09:44:16,590   adding 'nnunetv2/dataset_conversion/Dataset120_RoadSegmentation.py'
2024-02-21T09:44:16,592   adding 'nnunetv2/dataset_conversion/Dataset137_BraTS21.py'
2024-02-21T09:44:16,593   adding 'nnunetv2/dataset_conversion/Dataset218_Amos2022_task1.py'
2024-02-21T09:44:16,595   adding 'nnunetv2/dataset_conversion/Dataset219_Amos2022_task2.py'
2024-02-21T09:44:16,597   adding 'nnunetv2/dataset_conversion/Dataset220_KiTS2023.py'
2024-02-21T09:44:16,598   adding 'nnunetv2/dataset_conversion/Dataset221_AutoPETII_2023.py'
2024-02-21T09:44:16,599   adding 'nnunetv2/dataset_conversion/Dataset988_dummyDataset4.py'
2024-02-21T09:44:16,601   adding 'nnunetv2/dataset_conversion/__init__.py'
2024-02-21T09:44:16,602   adding 'nnunetv2/dataset_conversion/convert_MSD_dataset.py'
2024-02-21T09:44:16,603   adding 'nnunetv2/dataset_conversion/convert_raw_dataset_from_old_nnunet_format.py'
2024-02-21T09:44:16,605   adding 'nnunetv2/dataset_conversion/generate_dataset_json.py'
2024-02-21T09:44:16,607   adding 'nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset996_IntegrationTest_Hippocampus_regions_ignore.py'
2024-02-21T09:44:16,608   adding 'nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset997_IntegrationTest_Hippocampus_regions.py'
2024-02-21T09:44:16,610   adding 'nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset998_IntegrationTest_Hippocampus_ignore.py'
2024-02-21T09:44:16,611   adding 'nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset999_IntegrationTest_Hippocampus.py'
2024-02-21T09:44:16,613   adding 'nnunetv2/dataset_conversion/datasets_for_integration_tests/__init__.py'
2024-02-21T09:44:16,614   adding 'nnunetv2/ensembling/__init__.py'
2024-02-21T09:44:16,616   adding 'nnunetv2/ensembling/ensemble.py'
2024-02-21T09:44:16,618   adding 'nnunetv2/evaluation/__init__.py'
2024-02-21T09:44:16,619   adding 'nnunetv2/evaluation/accumulate_cv_results.py'
2024-02-21T09:44:16,621   adding 'nnunetv2/evaluation/evaluate_predictions.py'
2024-02-21T09:44:16,624   adding 'nnunetv2/evaluation/find_best_configuration.py'
2024-02-21T09:44:16,626   adding 'nnunetv2/experiment_planning/__init__.py'
2024-02-21T09:44:16,628   adding 'nnunetv2/experiment_planning/plan_and_preprocess_api.py'
2024-02-21T09:44:16,630   adding 'nnunetv2/experiment_planning/plan_and_preprocess_entrypoints.py'
2024-02-21T09:44:16,632   adding 'nnunetv2/experiment_planning/verify_dataset_integrity.py'
2024-02-21T09:44:16,635   adding 'nnunetv2/experiment_planning/dataset_fingerprint/__init__.py'
2024-02-21T09:44:16,637   adding 'nnunetv2/experiment_planning/dataset_fingerprint/fingerprint_extractor.py'
2024-02-21T09:44:16,639   adding 'nnunetv2/experiment_planning/experiment_planners/__init__.py'
2024-02-21T09:44:16,643   adding 'nnunetv2/experiment_planning/experiment_planners/default_experiment_planner.py'
2024-02-21T09:44:16,645   adding 'nnunetv2/experiment_planning/experiment_planners/network_topology.py'
2024-02-21T09:44:16,646   adding 'nnunetv2/experiment_planning/experiment_planners/resencUNet_planner.py'
2024-02-21T09:44:16,648   adding 'nnunetv2/experiment_planning/plans_for_pretraining/__init__.py'
2024-02-21T09:44:16,649   adding 'nnunetv2/experiment_planning/plans_for_pretraining/move_plans_between_datasets.py'
2024-02-21T09:44:16,651   adding 'nnunetv2/imageio/__init__.py'
2024-02-21T09:44:16,652   adding 'nnunetv2/imageio/base_reader_writer.py'
2024-02-21T09:44:16,654   adding 'nnunetv2/imageio/natural_image_reager_writer.py'
2024-02-21T09:44:16,655   adding 'nnunetv2/imageio/nibabel_reader_writer.py'
2024-02-21T09:44:16,657   adding 'nnunetv2/imageio/reader_writer_registry.py'
2024-02-21T09:44:16,658   adding 'nnunetv2/imageio/simpleitk_reader_writer.py'
2024-02-21T09:44:16,660   adding 'nnunetv2/imageio/tif_reader_writer.py'
2024-02-21T09:44:16,662   adding 'nnunetv2/inference/__init__.py'
2024-02-21T09:44:16,663   adding 'nnunetv2/inference/data_iterators.py'
2024-02-21T09:44:16,665   adding 'nnunetv2/inference/examples.py'
2024-02-21T09:44:16,667   adding 'nnunetv2/inference/export_prediction.py'
2024-02-21T09:44:16,672   adding 'nnunetv2/inference/predict_from_raw_data.py'
2024-02-21T09:44:16,674   adding 'nnunetv2/inference/sliding_window_prediction.py'
2024-02-21T09:44:16,675   adding 'nnunetv2/model_sharing/__init__.py'
2024-02-21T09:44:16,677   adding 'nnunetv2/model_sharing/entry_points.py'
2024-02-21T09:44:16,678   adding 'nnunetv2/model_sharing/model_download.py'
2024-02-21T09:44:16,680   adding 'nnunetv2/model_sharing/model_export.py'
2024-02-21T09:44:16,681   adding 'nnunetv2/model_sharing/model_import.py'
2024-02-21T09:44:16,682   adding 'nnunetv2/postprocessing/__init__.py'
2024-02-21T09:44:16,685   adding 'nnunetv2/postprocessing/remove_connected_components.py'
2024-02-21T09:44:16,687   adding 'nnunetv2/preprocessing/__init__.py'
2024-02-21T09:44:16,688   adding 'nnunetv2/preprocessing/cropping/__init__.py'
2024-02-21T09:44:16,689   adding 'nnunetv2/preprocessing/cropping/cropping.py'
2024-02-21T09:44:16,691   adding 'nnunetv2/preprocessing/normalization/__init__.py'
2024-02-21T09:44:16,693   adding 'nnunetv2/preprocessing/normalization/default_normalization_schemes.py'
2024-02-21T09:44:16,694   adding 'nnunetv2/preprocessing/normalization/map_channel_name_to_normalization.py'
2024-02-21T09:44:16,696   adding 'nnunetv2/preprocessing/preprocessors/__init__.py'
2024-02-21T09:44:16,699   adding 'nnunetv2/preprocessing/preprocessors/default_preprocessor.py'
2024-02-21T09:44:16,701   adding 'nnunetv2/preprocessing/resampling/__init__.py'
2024-02-21T09:44:16,704   adding 'nnunetv2/preprocessing/resampling/default_resampling.py'
2024-02-21T09:44:16,705   adding 'nnunetv2/preprocessing/resampling/utils.py'
2024-02-21T09:44:16,708   adding 'nnunetv2/run/__init__.py'
2024-02-21T09:44:16,709   adding 'nnunetv2/run/load_pretrained_weights.py'
2024-02-21T09:44:16,712   adding 'nnunetv2/run/run_training.py'
2024-02-21T09:44:16,714   adding 'nnunetv2/tests/__init__.py'
2024-02-21T09:44:16,717   adding 'nnunetv2/tests/integration_tests/__init__.py'
2024-02-21T09:44:16,718   adding 'nnunetv2/tests/integration_tests/add_lowres_and_cascade.py'
2024-02-21T09:44:16,720   adding 'nnunetv2/tests/integration_tests/cleanup_integration_test.py'
2024-02-21T09:44:16,722   adding 'nnunetv2/tests/integration_tests/run_integration_test_bestconfig_inference.py'
2024-02-21T09:44:16,724   adding 'nnunetv2/training/__init__.py'
2024-02-21T09:44:16,726   adding 'nnunetv2/training/data_augmentation/__init__.py'
2024-02-21T09:44:16,727   adding 'nnunetv2/training/data_augmentation/compute_initial_patch_size.py'
2024-02-21T09:44:16,729   adding 'nnunetv2/training/data_augmentation/custom_transforms/__init__.py'
2024-02-21T09:44:16,731   adding 'nnunetv2/training/data_augmentation/custom_transforms/cascade_transforms.py'
2024-02-21T09:44:16,733   adding 'nnunetv2/training/data_augmentation/custom_transforms/deep_supervision_donwsampling.py'
2024-02-21T09:44:16,734   adding 'nnunetv2/training/data_augmentation/custom_transforms/limited_length_multithreaded_augmenter.py'
2024-02-21T09:44:16,736   adding 'nnunetv2/training/data_augmentation/custom_transforms/manipulating_data_dict.py'
2024-02-21T09:44:16,737   adding 'nnunetv2/training/data_augmentation/custom_transforms/masking.py'
2024-02-21T09:44:16,739   adding 'nnunetv2/training/data_augmentation/custom_transforms/region_based_training.py'
2024-02-21T09:44:16,740   adding 'nnunetv2/training/data_augmentation/custom_transforms/transforms_for_dummy_2d.py'
2024-02-21T09:44:16,742   adding 'nnunetv2/training/dataloading/__init__.py'
2024-02-21T09:44:16,744   adding 'nnunetv2/training/dataloading/base_data_loader.py'
2024-02-21T09:44:16,747   adding 'nnunetv2/training/dataloading/data_loader_2d.py'
2024-02-21T09:44:16,748   adding 'nnunetv2/training/dataloading/data_loader_3d.py'
2024-02-21T09:44:16,750   adding 'nnunetv2/training/dataloading/nnunet_dataset.py'
2024-02-21T09:44:16,752   adding 'nnunetv2/training/dataloading/utils.py'
2024-02-21T09:44:16,754   adding 'nnunetv2/training/logging/__init__.py'
2024-02-21T09:44:16,756   adding 'nnunetv2/training/logging/nnunet_logger.py'
2024-02-21T09:44:16,758   adding 'nnunetv2/training/loss/__init__.py'
2024-02-21T09:44:16,760   adding 'nnunetv2/training/loss/compound_losses.py'
2024-02-21T09:44:16,761   adding 'nnunetv2/training/loss/deep_supervision.py'
2024-02-21T09:44:16,764   adding 'nnunetv2/training/loss/dice.py'
2024-02-21T09:44:16,766   adding 'nnunetv2/training/loss/robust_ce_loss.py'
2024-02-21T09:44:16,768   adding 'nnunetv2/training/lr_scheduler/__init__.py'
2024-02-21T09:44:16,769   adding 'nnunetv2/training/lr_scheduler/polylr.py'
2024-02-21T09:44:16,771   adding 'nnunetv2/training/nnUNetTrainer/__init__.py'
2024-02-21T09:44:16,782   adding 'nnunetv2/training/nnUNetTrainer/nnUNetTrainer.py'
2024-02-21T09:44:16,785   adding 'nnunetv2/training/nnUNetTrainer/variants/__init__.py'
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2024-02-21T09:44:16,789   adding 'nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs.py'
2024-02-21T09:44:16,791   adding 'nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs_noDataLoading.py'
2024-02-21T09:44:16,793   adding 'nnunetv2/training/nnUNetTrainer/variants/data_augmentation/__init__.py'
2024-02-21T09:44:16,795   adding 'nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDA5.py'
2024-02-21T09:44:16,796   adding 'nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDAOrd0.py'
2024-02-21T09:44:16,798   adding 'nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoDA.py'
2024-02-21T09:44:16,799   adding 'nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoMirroring.py'
2024-02-21T09:44:16,801   adding 'nnunetv2/training/nnUNetTrainer/variants/loss/__init__.py'
2024-02-21T09:44:16,802   adding 'nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerCELoss.py'
2024-02-21T09:44:16,803   adding 'nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerDiceLoss.py'
2024-02-21T09:44:16,805   adding 'nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerTopkLoss.py'
2024-02-21T09:44:16,807   adding 'nnunetv2/training/nnUNetTrainer/variants/lr_schedule/__init__.py'
2024-02-21T09:44:16,808   adding 'nnunetv2/training/nnUNetTrainer/variants/lr_schedule/nnUNetTrainerCosAnneal.py'
2024-02-21T09:44:16,810   adding 'nnunetv2/training/nnUNetTrainer/variants/network_architecture/__init__.py'
2024-02-21T09:44:16,811   adding 'nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerBN.py'
2024-02-21T09:44:16,813   adding 'nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerNoDeepSupervision.py'
2024-02-21T09:44:16,815   adding 'nnunetv2/training/nnUNetTrainer/variants/optimizer/__init__.py'
2024-02-21T09:44:16,816   adding 'nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdam.py'
2024-02-21T09:44:16,818   adding 'nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdan.py'
2024-02-21T09:44:16,820   adding 'nnunetv2/training/nnUNetTrainer/variants/sampling/__init__.py'
2024-02-21T09:44:16,821   adding 'nnunetv2/training/nnUNetTrainer/variants/sampling/nnUNetTrainer_probabilisticOversampling.py'
2024-02-21T09:44:16,823   adding 'nnunetv2/training/nnUNetTrainer/variants/training_length/__init__.py'
2024-02-21T09:44:16,824   adding 'nnunetv2/training/nnUNetTrainer/variants/training_length/nnUNetTrainer_Xepochs.py'
2024-02-21T09:44:16,825   adding 'nnunetv2/training/nnUNetTrainer/variants/training_length/nnUNetTrainer_Xepochs_NoMirroring.py'
2024-02-21T09:44:16,827   adding 'nnunetv2/utilities/__init__.py'
2024-02-21T09:44:16,829   adding 'nnunetv2/utilities/collate_outputs.py'
2024-02-21T09:44:16,830   adding 'nnunetv2/utilities/dataset_name_id_conversion.py'
2024-02-21T09:44:16,831   adding 'nnunetv2/utilities/ddp_allgather.py'
2024-02-21T09:44:16,833   adding 'nnunetv2/utilities/default_n_proc_DA.py'
2024-02-21T09:44:16,834   adding 'nnunetv2/utilities/file_path_utilities.py'
2024-02-21T09:44:16,835   adding 'nnunetv2/utilities/find_class_by_name.py'
2024-02-21T09:44:16,837   adding 'nnunetv2/utilities/get_network_from_plans.py'
2024-02-21T09:44:16,838   adding 'nnunetv2/utilities/helpers.py'
2024-02-21T09:44:16,839   adding 'nnunetv2/utilities/json_export.py'
2024-02-21T09:44:16,841   adding 'nnunetv2/utilities/network_initialization.py'
2024-02-21T09:44:16,842   adding 'nnunetv2/utilities/overlay_plots.py'
2024-02-21T09:44:16,844   adding 'nnunetv2/utilities/utils.py'
2024-02-21T09:44:16,846   adding 'nnunetv2/utilities/label_handling/__init__.py'
2024-02-21T09:44:16,848   adding 'nnunetv2/utilities/label_handling/label_handling.py'
2024-02-21T09:44:16,850   adding 'nnunetv2/utilities/plans_handling/__init__.py'
2024-02-21T09:44:16,852   adding 'nnunetv2/utilities/plans_handling/plans_handler.py'
2024-02-21T09:44:16,855   adding 'nnunetv2-2.2.2.dist-info/LICENSE'
2024-02-21T09:44:16,858   adding 'nnunetv2-2.2.2.dist-info/METADATA'
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2024-02-21T09:44:16,861   adding 'nnunetv2-2.2.2.dist-info/entry_points.txt'
2024-02-21T09:44:16,862   adding 'nnunetv2-2.2.2.dist-info/top_level.txt'
2024-02-21T09:44:16,865   adding 'nnunetv2-2.2.2.dist-info/RECORD'
2024-02-21T09:44:16,870   removing build/bdist.linux-armv7l/wheel
2024-02-21T09:44:17,041   Building wheel for nnunetv2 (pyproject.toml): finished with status 'done'
2024-02-21T09:44:17,051   Created wheel for nnunetv2: filename=nnunetv2-2.2.2-py3-none-any.whl size=237459 sha256=04c98805751a155047b961fc65c37582ed9b9804cbc628bd7bca38cf3ba1cd4f
2024-02-21T09:44:17,052   Stored in directory: /tmp/pip-ephem-wheel-cache-syb0hri7/wheels/37/c5/ca/2a9a168ed8983b7154ef2b529d91fc3c75ad51145c6a7f0298
2024-02-21T09:44:17,076 Successfully built nnunetv2
2024-02-21T09:44:17,085 Removed build tracker: '/tmp/pip-build-tracker-if7oevz1'