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https://www.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.0.dev5-py2.py3-none-any.whl#sha256=f869574a225f69e7b51f6dba165eec4a58fe6c76d45924aecd9cc44e6513ad77 (from https://www.piwheels.org/simple/galaxy-tool-util/) 2024-02-22T05:02:02,372 Skipping link: No binaries permitted for galaxy-tool-util: https://www.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.0.dev4-py2.py3-none-any.whl#sha256=f8287860bf6f524db3bd2d9096b97595aecea1a1e321065d5e36d971f5cd7b79 (from https://www.piwheels.org/simple/galaxy-tool-util/) 2024-02-22T05:02:02,372 Skipping link: No binaries permitted for galaxy-tool-util: https://www.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.0.dev3-py2.py3-none-any.whl#sha256=c11cefb2c969b6e74729ae125693e5bf5401218df9615d22a68b3a5d8ce68122 (from https://www.piwheels.org/simple/galaxy-tool-util/) 2024-02-22T05:02:02,373 Skipping link: No binaries permitted for galaxy-tool-util: https://www.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.0.dev2-py2.py3-none-any.whl#sha256=62e79b75dc27fa398c1e33a336b253d18de3fc94880fe567b3ee01fd081c6d5c (from https://www.piwheels.org/simple/galaxy-tool-util/) 2024-02-22T05:02:02,373 Skipping link: No binaries permitted for galaxy-tool-util: https://www.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.0.dev1-py2.py3-none-any.whl#sha256=7ff286949cb2c87a462ef1360b4ff58a3d0fc953dfde646f2b23bc9438d63ada (from https://www.piwheels.org/simple/galaxy-tool-util/) 2024-02-22T05:02:02,374 Skipping link: No binaries permitted for galaxy-tool-util: https://www.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.0.dev0-py3-none-any.whl#sha256=f3257799e554be8d31f640710ed8672994323cbfda020a3648775c6d156fad4a (from https://www.piwheels.org/simple/galaxy-tool-util/) 2024-02-22T05:02:02,374 Skipping link: not a file: https://www.piwheels.org/simple/galaxy-tool-util/ 2024-02-22T05:02:02,375 Skipping link: not a file: https://pypi.org/simple/galaxy-tool-util/ 2024-02-22T05:02:02,398 Given no hashes to check 1 links for project 'galaxy-tool-util': discarding no candidates 2024-02-22T05:02:02,416 Collecting galaxy-tool-util==23.2.1 2024-02-22T05:02:02,418 Created temporary directory: /tmp/pip-unpack-4gbj_ibb 2024-02-22T05:02:02,639 Downloading galaxy-tool-util-23.2.1.tar.gz (354 kB) 2024-02-22T05:02:03,036 Added galaxy-tool-util==23.2.1 from https://files.pythonhosted.org/packages/54/5d/6e8bfbae76b2b980223c5fc6ffc9292b41c2bb9f2d6919ca3ed435b3c576/galaxy-tool-util-23.2.1.tar.gz to build tracker '/tmp/pip-build-tracker-u042rss0' 2024-02-22T05:02:03,039 Created temporary directory: /tmp/pip-build-env-kd4vath1 2024-02-22T05:02:03,044 Installing build dependencies: started 2024-02-22T05:02:03,045 Running command pip subprocess to install build dependencies 2024-02-22T05:02:04,464 Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-02-22T05:02:05,081 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-02-22T05:02:06,545 Collecting setuptools 2024-02-22T05:02:06,781 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.1.0-py3-none-any.whl (819 kB) 2024-02-22T05:02:09,390 Installing collected packages: setuptools 2024-02-22T05:02:14,051 Successfully installed setuptools-69.1.0 2024-02-22T05:02:14,324 [notice] A new release of pip is available: 23.3.1 -> 24.0 2024-02-22T05:02:14,325 [notice] To update, run: python3 -m pip install --upgrade pip 2024-02-22T05:02:14,586 Installing build dependencies: finished with status 'done' 2024-02-22T05:02:14,590 Getting requirements to build wheel: started 2024-02-22T05:02:14,591 Running command Getting requirements to build wheel 2024-02-22T05:02:15,220 running egg_info 2024-02-22T05:02:15,224 writing galaxy_tool_util.egg-info/PKG-INFO 2024-02-22T05:02:15,229 writing dependency_links to galaxy_tool_util.egg-info/dependency_links.txt 2024-02-22T05:02:15,232 writing entry points to galaxy_tool_util.egg-info/entry_points.txt 2024-02-22T05:02:15,234 writing requirements to galaxy_tool_util.egg-info/requires.txt 2024-02-22T05:02:15,236 writing top-level names to galaxy_tool_util.egg-info/top_level.txt 2024-02-22T05:02:15,280 reading manifest file 'galaxy_tool_util.egg-info/SOURCES.txt' 2024-02-22T05:02:15,285 reading manifest template 'MANIFEST.in' 2024-02-22T05:02:15,291 adding license file 'LICENSE' 2024-02-22T05:02:15,299 writing manifest file 'galaxy_tool_util.egg-info/SOURCES.txt' 2024-02-22T05:02:15,376 Getting requirements to build wheel: finished with status 'done' 2024-02-22T05:02:15,383 Installing backend dependencies: started 2024-02-22T05:02:15,385 Running command pip subprocess to install backend dependencies 2024-02-22T05:02:16,529 Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-02-22T05:02:17,046 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-02-22T05:02:17,590 Collecting wheel 2024-02-22T05:02:17,603 Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB) 2024-02-22T05:02:19,935 Installing collected packages: wheel 2024-02-22T05:02:20,254 Creating /tmp/pip-build-env-kd4vath1/normal/local/bin 2024-02-22T05:02:20,257 changing mode of /tmp/pip-build-env-kd4vath1/normal/local/bin/wheel to 755 2024-02-22T05:02:20,272 Successfully installed wheel-0.42.0 2024-02-22T05:02:20,576 [notice] A new release of pip is available: 23.3.1 -> 24.0 2024-02-22T05:02:20,577 [notice] To update, run: python3 -m pip install --upgrade pip 2024-02-22T05:02:20,821 Installing backend dependencies: finished with status 'done' 2024-02-22T05:02:20,824 Created temporary directory: /tmp/pip-modern-metadata-4zo64hmp 2024-02-22T05:02:20,827 Preparing metadata (pyproject.toml): started 2024-02-22T05:02:20,828 Running command Preparing metadata (pyproject.toml) 2024-02-22T05:02:21,464 running dist_info 2024-02-22T05:02:21,488 creating /tmp/pip-modern-metadata-4zo64hmp/galaxy_tool_util.egg-info 2024-02-22T05:02:21,492 writing /tmp/pip-modern-metadata-4zo64hmp/galaxy_tool_util.egg-info/PKG-INFO 2024-02-22T05:02:21,500 writing dependency_links to /tmp/pip-modern-metadata-4zo64hmp/galaxy_tool_util.egg-info/dependency_links.txt 2024-02-22T05:02:21,502 writing entry points to /tmp/pip-modern-metadata-4zo64hmp/galaxy_tool_util.egg-info/entry_points.txt 2024-02-22T05:02:21,505 writing requirements to /tmp/pip-modern-metadata-4zo64hmp/galaxy_tool_util.egg-info/requires.txt 2024-02-22T05:02:21,516 writing top-level names to /tmp/pip-modern-metadata-4zo64hmp/galaxy_tool_util.egg-info/top_level.txt 2024-02-22T05:02:21,518 writing manifest file '/tmp/pip-modern-metadata-4zo64hmp/galaxy_tool_util.egg-info/SOURCES.txt' 2024-02-22T05:02:21,591 reading manifest file '/tmp/pip-modern-metadata-4zo64hmp/galaxy_tool_util.egg-info/SOURCES.txt' 2024-02-22T05:02:21,594 reading manifest template 'MANIFEST.in' 2024-02-22T05:02:21,603 adding license file 'LICENSE' 2024-02-22T05:02:21,609 writing manifest file '/tmp/pip-modern-metadata-4zo64hmp/galaxy_tool_util.egg-info/SOURCES.txt' 2024-02-22T05:02:21,611 creating '/tmp/pip-modern-metadata-4zo64hmp/galaxy_tool_util-23.2.1.dist-info' 2024-02-22T05:02:21,825 Preparing metadata (pyproject.toml): finished with status 'done' 2024-02-22T05:02:21,831 Source in /tmp/pip-wheel-_3q3h1wz/galaxy-tool-util_6132ce7ecc29454ead3cb677f6754fbe has version 23.2.1, which satisfies requirement galaxy-tool-util==23.2.1 from https://files.pythonhosted.org/packages/54/5d/6e8bfbae76b2b980223c5fc6ffc9292b41c2bb9f2d6919ca3ed435b3c576/galaxy-tool-util-23.2.1.tar.gz 2024-02-22T05:02:21,833 Removed galaxy-tool-util==23.2.1 from https://files.pythonhosted.org/packages/54/5d/6e8bfbae76b2b980223c5fc6ffc9292b41c2bb9f2d6919ca3ed435b3c576/galaxy-tool-util-23.2.1.tar.gz from build tracker '/tmp/pip-build-tracker-u042rss0' 2024-02-22T05:02:21,840 Created temporary directory: /tmp/pip-unpack-2m_67l3r 2024-02-22T05:02:21,841 Created temporary directory: /tmp/pip-unpack-5oargzov 2024-02-22T05:02:21,868 Building wheels for collected packages: galaxy-tool-util 2024-02-22T05:02:21,874 Created temporary directory: /tmp/pip-wheel-cmwz9zmh 2024-02-22T05:02:21,874 Destination directory: /tmp/pip-wheel-cmwz9zmh 2024-02-22T05:02:21,877 Building wheel for galaxy-tool-util (pyproject.toml): started 2024-02-22T05:02:21,878 Running command Building wheel for galaxy-tool-util (pyproject.toml) 2024-02-22T05:02:22,499 running bdist_wheel 2024-02-22T05:02:22,540 running build 2024-02-22T05:02:22,541 running build_py 2024-02-22T05:02:22,548 creating build 2024-02-22T05:02:22,548 creating build/lib 2024-02-22T05:02:22,549 creating build/lib/galaxy 2024-02-22T05:02:22,550 copying galaxy/__init__.py -> build/lib/galaxy 2024-02-22T05:02:22,553 creating build/lib/galaxy/tool_util 2024-02-22T05:02:22,554 copying galaxy/tool_util/version.py -> build/lib/galaxy/tool_util 2024-02-22T05:02:22,556 copying galaxy/tool_util/lint.py -> build/lib/galaxy/tool_util 2024-02-22T05:02:22,558 copying galaxy/tool_util/edam_util.py -> build/lib/galaxy/tool_util 2024-02-22T05:02:22,560 copying galaxy/tool_util/output_checker.py -> build/lib/galaxy/tool_util 2024-02-22T05:02:22,562 copying galaxy/tool_util/fetcher.py -> build/lib/galaxy/tool_util 2024-02-22T05:02:22,564 copying galaxy/tool_util/loader_directory.py -> build/lib/galaxy/tool_util 2024-02-22T05:02:22,566 copying galaxy/tool_util/provided_metadata.py -> build/lib/galaxy/tool_util 2024-02-22T05:02:22,568 copying galaxy/tool_util/loader.py -> build/lib/galaxy/tool_util 2024-02-22T05:02:22,570 copying galaxy/tool_util/__init__.py -> build/lib/galaxy/tool_util 2024-02-22T05:02:22,572 creating build/lib/galaxy/tool_util/deps 2024-02-22T05:02:22,573 copying galaxy/tool_util/deps/dockerfiles.py -> build/lib/galaxy/tool_util/deps 2024-02-22T05:02:22,575 copying galaxy/tool_util/deps/container_classes.py -> build/lib/galaxy/tool_util/deps 2024-02-22T05:02:22,577 copying galaxy/tool_util/deps/containers.py -> build/lib/galaxy/tool_util/deps 2024-02-22T05:02:22,580 copying galaxy/tool_util/deps/installable.py -> build/lib/galaxy/tool_util/deps 2024-02-22T05:02:22,582 copying galaxy/tool_util/deps/dependencies.py -> build/lib/galaxy/tool_util/deps 2024-02-22T05:02:22,584 copying galaxy/tool_util/deps/conda_compat.py -> build/lib/galaxy/tool_util/deps 2024-02-22T05:02:22,585 copying galaxy/tool_util/deps/brew_exts.py -> build/lib/galaxy/tool_util/deps 2024-02-22T05:02:22,588 copying galaxy/tool_util/deps/brew_util.py -> build/lib/galaxy/tool_util/deps 2024-02-22T05:02:22,590 copying galaxy/tool_util/deps/views.py -> build/lib/galaxy/tool_util/deps 2024-02-22T05:02:22,592 copying galaxy/tool_util/deps/requirements.py -> build/lib/galaxy/tool_util/deps 2024-02-22T05:02:22,594 copying galaxy/tool_util/deps/commands.py -> build/lib/galaxy/tool_util/deps 2024-02-22T05:02:22,596 copying galaxy/tool_util/deps/container_volumes.py -> build/lib/galaxy/tool_util/deps 2024-02-22T05:02:22,597 copying galaxy/tool_util/deps/docker_util.py -> build/lib/galaxy/tool_util/deps 2024-02-22T05:02:22,599 copying galaxy/tool_util/deps/conda_util.py -> build/lib/galaxy/tool_util/deps 2024-02-22T05:02:22,602 copying galaxy/tool_util/deps/__init__.py -> build/lib/galaxy/tool_util/deps 2024-02-22T05:02:22,604 copying galaxy/tool_util/deps/singularity_util.py -> build/lib/galaxy/tool_util/deps 2024-02-22T05:02:22,607 creating build/lib/galaxy/tool_util/ontologies 2024-02-22T05:02:22,608 copying galaxy/tool_util/ontologies/ontology_data.py -> build/lib/galaxy/tool_util/ontologies 2024-02-22T05:02:22,610 copying galaxy/tool_util/ontologies/__init__.py -> build/lib/galaxy/tool_util/ontologies 2024-02-22T05:02:22,611 creating build/lib/galaxy/tool_util/data 2024-02-22T05:02:22,612 copying galaxy/tool_util/data/__init__.py -> build/lib/galaxy/tool_util/data 2024-02-22T05:02:22,616 copying galaxy/tool_util/data/_schema.py -> build/lib/galaxy/tool_util/data 2024-02-22T05:02:22,618 creating build/lib/galaxy/tool_util/verify 2024-02-22T05:02:22,619 copying galaxy/tool_util/verify/script.py -> build/lib/galaxy/tool_util/verify 2024-02-22T05:02:22,622 copying galaxy/tool_util/verify/interactor.py -> build/lib/galaxy/tool_util/verify 2024-02-22T05:02:22,626 copying galaxy/tool_util/verify/test_data.py -> build/lib/galaxy/tool_util/verify 2024-02-22T05:02:22,628 copying galaxy/tool_util/verify/__init__.py -> build/lib/galaxy/tool_util/verify 2024-02-22T05:02:22,630 copying galaxy/tool_util/verify/wait.py -> build/lib/galaxy/tool_util/verify 2024-02-22T05:02:22,632 creating build/lib/galaxy/tool_util/client 2024-02-22T05:02:22,633 copying galaxy/tool_util/client/staging.py -> build/lib/galaxy/tool_util/client 2024-02-22T05:02:22,635 copying galaxy/tool_util/client/__init__.py -> build/lib/galaxy/tool_util/client 2024-02-22T05:02:22,637 creating build/lib/galaxy/tool_util/locations 2024-02-22T05:02:22,638 copying galaxy/tool_util/locations/dockstore.py -> build/lib/galaxy/tool_util/locations 2024-02-22T05:02:22,640 copying galaxy/tool_util/locations/http.py -> build/lib/galaxy/tool_util/locations 2024-02-22T05:02:22,642 copying galaxy/tool_util/locations/file.py -> build/lib/galaxy/tool_util/locations 2024-02-22T05:02:22,644 copying galaxy/tool_util/locations/__init__.py -> build/lib/galaxy/tool_util/locations 2024-02-22T05:02:22,646 creating build/lib/galaxy/tool_util/linters 2024-02-22T05:02:22,647 copying galaxy/tool_util/linters/_util.py -> build/lib/galaxy/tool_util/linters 2024-02-22T05:02:22,649 copying galaxy/tool_util/linters/general.py -> build/lib/galaxy/tool_util/linters 2024-02-22T05:02:22,651 copying galaxy/tool_util/linters/command.py -> build/lib/galaxy/tool_util/linters 2024-02-22T05:02:22,652 copying galaxy/tool_util/linters/outputs.py -> build/lib/galaxy/tool_util/linters 2024-02-22T05:02:22,654 copying galaxy/tool_util/linters/tests.py -> build/lib/galaxy/tool_util/linters 2024-02-22T05:02:22,656 copying galaxy/tool_util/linters/xml_order.py -> build/lib/galaxy/tool_util/linters 2024-02-22T05:02:22,658 copying galaxy/tool_util/linters/citations.py -> build/lib/galaxy/tool_util/linters 2024-02-22T05:02:22,660 copying galaxy/tool_util/linters/cwl.py -> build/lib/galaxy/tool_util/linters 2024-02-22T05:02:22,662 copying galaxy/tool_util/linters/stdio.py -> build/lib/galaxy/tool_util/linters 2024-02-22T05:02:22,663 copying galaxy/tool_util/linters/help.py -> build/lib/galaxy/tool_util/linters 2024-02-22T05:02:22,665 copying galaxy/tool_util/linters/__init__.py -> build/lib/galaxy/tool_util/linters 2024-02-22T05:02:22,667 copying galaxy/tool_util/linters/inputs.py -> build/lib/galaxy/tool_util/linters 2024-02-22T05:02:22,670 creating build/lib/galaxy/tool_util/parser 2024-02-22T05:02:22,671 copying galaxy/tool_util/parser/factory.py -> build/lib/galaxy/tool_util/parser 2024-02-22T05:02:22,673 copying galaxy/tool_util/parser/util.py -> build/lib/galaxy/tool_util/parser 2024-02-22T05:02:22,675 copying galaxy/tool_util/parser/output_collection_def.py -> build/lib/galaxy/tool_util/parser 2024-02-22T05:02:22,677 copying galaxy/tool_util/parser/output_objects.py -> build/lib/galaxy/tool_util/parser 2024-02-22T05:02:22,679 copying galaxy/tool_util/parser/interface.py -> build/lib/galaxy/tool_util/parser 2024-02-22T05:02:22,681 copying galaxy/tool_util/parser/xml.py -> build/lib/galaxy/tool_util/parser 2024-02-22T05:02:22,685 copying galaxy/tool_util/parser/cwl.py -> build/lib/galaxy/tool_util/parser 2024-02-22T05:02:22,687 copying galaxy/tool_util/parser/stdio.py -> build/lib/galaxy/tool_util/parser 2024-02-22T05:02:22,689 copying galaxy/tool_util/parser/yaml.py -> build/lib/galaxy/tool_util/parser 2024-02-22T05:02:22,691 copying galaxy/tool_util/parser/output_actions.py -> build/lib/galaxy/tool_util/parser 2024-02-22T05:02:22,694 copying galaxy/tool_util/parser/__init__.py -> build/lib/galaxy/tool_util/parser 2024-02-22T05:02:22,696 creating build/lib/galaxy/tool_util/cwl 2024-02-22T05:02:22,697 copying galaxy/tool_util/cwl/representation.py -> build/lib/galaxy/tool_util/cwl 2024-02-22T05:02:22,700 copying galaxy/tool_util/cwl/schema.py -> build/lib/galaxy/tool_util/cwl 2024-02-22T05:02:22,701 copying galaxy/tool_util/cwl/util.py -> build/lib/galaxy/tool_util/cwl 2024-02-22T05:02:22,704 copying galaxy/tool_util/cwl/runnable.py -> build/lib/galaxy/tool_util/cwl 2024-02-22T05:02:22,706 copying galaxy/tool_util/cwl/cwltool_deps.py -> build/lib/galaxy/tool_util/cwl 2024-02-22T05:02:22,707 copying galaxy/tool_util/cwl/parser.py -> build/lib/galaxy/tool_util/cwl 2024-02-22T05:02:22,710 copying galaxy/tool_util/cwl/runtime_actions.py -> build/lib/galaxy/tool_util/cwl 2024-02-22T05:02:22,712 copying galaxy/tool_util/cwl/__init__.py -> build/lib/galaxy/tool_util/cwl 2024-02-22T05:02:22,715 creating build/lib/galaxy/tool_util/toolbox 2024-02-22T05:02:22,716 copying galaxy/tool_util/toolbox/base.py -> build/lib/galaxy/tool_util/toolbox 2024-02-22T05:02:22,719 copying galaxy/tool_util/toolbox/watcher.py -> build/lib/galaxy/tool_util/toolbox 2024-02-22T05:02:22,721 copying galaxy/tool_util/toolbox/integrated_panel.py -> build/lib/galaxy/tool_util/toolbox 2024-02-22T05:02:22,723 copying galaxy/tool_util/toolbox/panel.py -> build/lib/galaxy/tool_util/toolbox 2024-02-22T05:02:22,725 copying galaxy/tool_util/toolbox/parser.py -> build/lib/galaxy/tool_util/toolbox 2024-02-22T05:02:22,727 copying galaxy/tool_util/toolbox/__init__.py -> build/lib/galaxy/tool_util/toolbox 2024-02-22T05:02:22,729 creating build/lib/galaxy/tool_util/biotools 2024-02-22T05:02:22,730 copying galaxy/tool_util/biotools/interface.py -> build/lib/galaxy/tool_util/biotools 2024-02-22T05:02:22,732 copying galaxy/tool_util/biotools/source.py -> build/lib/galaxy/tool_util/biotools 2024-02-22T05:02:22,733 copying galaxy/tool_util/biotools/__init__.py -> build/lib/galaxy/tool_util/biotools 2024-02-22T05:02:22,735 creating build/lib/galaxy/tool_util/unittest_utils 2024-02-22T05:02:22,736 copying galaxy/tool_util/unittest_utils/interactor.py -> build/lib/galaxy/tool_util/unittest_utils 2024-02-22T05:02:22,739 copying galaxy/tool_util/unittest_utils/sample_data.py -> build/lib/galaxy/tool_util/unittest_utils 2024-02-22T05:02:22,740 copying galaxy/tool_util/unittest_utils/__init__.py -> build/lib/galaxy/tool_util/unittest_utils 2024-02-22T05:02:22,742 creating build/lib/galaxy/tool_util/deps/container_resolvers 2024-02-22T05:02:22,743 copying galaxy/tool_util/deps/container_resolvers/explicit.py -> build/lib/galaxy/tool_util/deps/container_resolvers 2024-02-22T05:02:22,745 copying galaxy/tool_util/deps/container_resolvers/test.py -> build/lib/galaxy/tool_util/deps/container_resolvers 2024-02-22T05:02:22,747 copying galaxy/tool_util/deps/container_resolvers/mulled.py -> build/lib/galaxy/tool_util/deps/container_resolvers 2024-02-22T05:02:22,750 copying galaxy/tool_util/deps/container_resolvers/__init__.py -> build/lib/galaxy/tool_util/deps/container_resolvers 2024-02-22T05:02:22,752 creating build/lib/galaxy/tool_util/deps/mulled 2024-02-22T05:02:22,753 copying galaxy/tool_util/deps/mulled/get_tests.py -> build/lib/galaxy/tool_util/deps/mulled 2024-02-22T05:02:22,756 copying galaxy/tool_util/deps/mulled/mulled_list.py -> build/lib/galaxy/tool_util/deps/mulled 2024-02-22T05:02:22,758 copying galaxy/tool_util/deps/mulled/util.py -> build/lib/galaxy/tool_util/deps/mulled 2024-02-22T05:02:22,760 copying galaxy/tool_util/deps/mulled/mulled_build_files.py -> build/lib/galaxy/tool_util/deps/mulled 2024-02-22T05:02:22,762 copying galaxy/tool_util/deps/mulled/_cli.py -> build/lib/galaxy/tool_util/deps/mulled 2024-02-22T05:02:22,764 copying galaxy/tool_util/deps/mulled/mulled_search.py -> build/lib/galaxy/tool_util/deps/mulled 2024-02-22T05:02:22,766 copying galaxy/tool_util/deps/mulled/mulled_build_channel.py -> build/lib/galaxy/tool_util/deps/mulled 2024-02-22T05:02:22,768 copying galaxy/tool_util/deps/mulled/mulled_update_singularity_containers.py -> build/lib/galaxy/tool_util/deps/mulled 2024-02-22T05:02:22,770 copying galaxy/tool_util/deps/mulled/mulled_build.py -> build/lib/galaxy/tool_util/deps/mulled 2024-02-22T05:02:22,772 copying galaxy/tool_util/deps/mulled/mulled_hash.py -> build/lib/galaxy/tool_util/deps/mulled 2024-02-22T05:02:22,774 copying galaxy/tool_util/deps/mulled/mulled_build_tool.py -> build/lib/galaxy/tool_util/deps/mulled 2024-02-22T05:02:22,776 copying galaxy/tool_util/deps/mulled/__init__.py -> build/lib/galaxy/tool_util/deps/mulled 2024-02-22T05:02:22,778 creating build/lib/galaxy/tool_util/deps/resolvers 2024-02-22T05:02:22,779 copying galaxy/tool_util/deps/resolvers/tool_shed_packages.py -> build/lib/galaxy/tool_util/deps/resolvers 2024-02-22T05:02:22,781 copying galaxy/tool_util/deps/resolvers/homebrew.py -> build/lib/galaxy/tool_util/deps/resolvers 2024-02-22T05:02:22,783 copying galaxy/tool_util/deps/resolvers/lmod.py -> build/lib/galaxy/tool_util/deps/resolvers 2024-02-22T05:02:22,785 copying galaxy/tool_util/deps/resolvers/galaxy_packages.py -> build/lib/galaxy/tool_util/deps/resolvers 2024-02-22T05:02:22,787 copying galaxy/tool_util/deps/resolvers/unlinked_tool_shed_packages.py -> build/lib/galaxy/tool_util/deps/resolvers 2024-02-22T05:02:22,789 copying galaxy/tool_util/deps/resolvers/modules.py -> build/lib/galaxy/tool_util/deps/resolvers 2024-02-22T05:02:22,791 copying galaxy/tool_util/deps/resolvers/resolver_mixins.py -> build/lib/galaxy/tool_util/deps/resolvers 2024-02-22T05:02:22,793 copying galaxy/tool_util/deps/resolvers/conda.py -> build/lib/galaxy/tool_util/deps/resolvers 2024-02-22T05:02:22,795 copying galaxy/tool_util/deps/resolvers/__init__.py -> build/lib/galaxy/tool_util/deps/resolvers 2024-02-22T05:02:22,797 copying galaxy/tool_util/deps/resolvers/brewed_tool_shed_packages.py -> build/lib/galaxy/tool_util/deps/resolvers 2024-02-22T05:02:22,799 creating build/lib/galaxy/tool_util/data/bundles 2024-02-22T05:02:22,800 copying galaxy/tool_util/data/bundles/models.py -> build/lib/galaxy/tool_util/data/bundles 2024-02-22T05:02:22,802 copying galaxy/tool_util/data/bundles/__init__.py -> build/lib/galaxy/tool_util/data/bundles 2024-02-22T05:02:22,804 creating build/lib/galaxy/tool_util/verify/asserts 2024-02-22T05:02:22,805 copying galaxy/tool_util/verify/asserts/_util.py -> build/lib/galaxy/tool_util/verify/asserts 2024-02-22T05:02:22,807 copying galaxy/tool_util/verify/asserts/hdf5.py -> build/lib/galaxy/tool_util/verify/asserts 2024-02-22T05:02:22,809 copying galaxy/tool_util/verify/asserts/tabular.py -> build/lib/galaxy/tool_util/verify/asserts 2024-02-22T05:02:22,810 copying galaxy/tool_util/verify/asserts/size.py -> build/lib/galaxy/tool_util/verify/asserts 2024-02-22T05:02:22,812 copying galaxy/tool_util/verify/asserts/json.py -> build/lib/galaxy/tool_util/verify/asserts 2024-02-22T05:02:22,814 copying galaxy/tool_util/verify/asserts/archive.py -> build/lib/galaxy/tool_util/verify/asserts 2024-02-22T05:02:22,816 copying galaxy/tool_util/verify/asserts/xml.py -> build/lib/galaxy/tool_util/verify/asserts 2024-02-22T05:02:22,818 copying galaxy/tool_util/verify/asserts/__init__.py -> build/lib/galaxy/tool_util/verify/asserts 2024-02-22T05:02:22,820 copying galaxy/tool_util/verify/asserts/text.py -> build/lib/galaxy/tool_util/verify/asserts 2024-02-22T05:02:22,823 creating build/lib/galaxy/tool_util/toolbox/views 2024-02-22T05:02:22,823 copying galaxy/tool_util/toolbox/views/definitions.py -> build/lib/galaxy/tool_util/toolbox/views 2024-02-22T05:02:22,826 copying galaxy/tool_util/toolbox/views/interface.py -> build/lib/galaxy/tool_util/toolbox/views 2024-02-22T05:02:22,827 copying galaxy/tool_util/toolbox/views/static.py -> build/lib/galaxy/tool_util/toolbox/views 2024-02-22T05:02:22,829 copying galaxy/tool_util/toolbox/views/edam.py -> build/lib/galaxy/tool_util/toolbox/views 2024-02-22T05:02:22,831 copying galaxy/tool_util/toolbox/views/sources.py -> build/lib/galaxy/tool_util/toolbox/views 2024-02-22T05:02:22,833 copying galaxy/tool_util/toolbox/views/__init__.py -> build/lib/galaxy/tool_util/toolbox/views 2024-02-22T05:02:22,835 creating build/lib/galaxy/tool_util/toolbox/filters 2024-02-22T05:02:22,836 copying galaxy/tool_util/toolbox/filters/__init__.py -> build/lib/galaxy/tool_util/toolbox/filters 2024-02-22T05:02:22,839 creating build/lib/galaxy/tool_util/toolbox/lineages 2024-02-22T05:02:22,840 copying galaxy/tool_util/toolbox/lineages/factory.py -> build/lib/galaxy/tool_util/toolbox/lineages 2024-02-22T05:02:22,842 copying galaxy/tool_util/toolbox/lineages/interface.py -> build/lib/galaxy/tool_util/toolbox/lineages 2024-02-22T05:02:22,844 copying galaxy/tool_util/toolbox/lineages/__init__.py -> build/lib/galaxy/tool_util/toolbox/lineages 2024-02-22T05:02:22,845 running egg_info 2024-02-22T05:02:22,849 writing galaxy_tool_util.egg-info/PKG-INFO 2024-02-22T05:02:23,199 writing dependency_links to galaxy_tool_util.egg-info/dependency_links.txt 2024-02-22T05:02:23,200 writing entry points to galaxy_tool_util.egg-info/entry_points.txt 2024-02-22T05:02:23,203 writing requirements to galaxy_tool_util.egg-info/requires.txt 2024-02-22T05:02:23,204 writing top-level names to galaxy_tool_util.egg-info/top_level.txt 2024-02-22T05:02:23,230 reading manifest file 'galaxy_tool_util.egg-info/SOURCES.txt' 2024-02-22T05:02:23,235 reading manifest template 'MANIFEST.in' 2024-02-22T05:02:23,239 adding license file 'LICENSE' 2024-02-22T05:02:23,247 writing manifest file 'galaxy_tool_util.egg-info/SOURCES.txt' 2024-02-22T05:02:23,250 /tmp/pip-build-env-kd4vath1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tool_util.xsd' is absent from the `packages` configuration. 2024-02-22T05:02:23,251 !! 2024-02-22T05:02:23,252 ******************************************************************************** 2024-02-22T05:02:23,252 ############################ 2024-02-22T05:02:23,253 # Package would be ignored # 2024-02-22T05:02:23,254 ############################ 2024-02-22T05:02:23,254 Python recognizes 'galaxy.tool_util.xsd' as an importable package[^1], 2024-02-22T05:02:23,255 but it is absent from setuptools' `packages` configuration. 2024-02-22T05:02:23,256 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-22T05:02:23,256 package, please make sure that 'galaxy.tool_util.xsd' is explicitly added 2024-02-22T05:02:23,256 to the `packages` configuration field. 2024-02-22T05:02:23,258 Alternatively, you can also rely on setuptools' discovery methods 2024-02-22T05:02:23,258 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-22T05:02:23,259 instead of `find_packages(...)`/`find:`). 2024-02-22T05:02:23,259 You can read more about "package discovery" on setuptools documentation page: 2024-02-22T05:02:23,261 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-22T05:02:23,262 If you don't want 'galaxy.tool_util.xsd' to be distributed and are 2024-02-22T05:02:23,262 already explicitly excluding 'galaxy.tool_util.xsd' via 2024-02-22T05:02:23,263 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-22T05:02:23,263 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-22T05:02:23,264 combination with a more fine grained `package-data` configuration. 2024-02-22T05:02:23,265 You can read more about "package data files" on setuptools documentation page: 2024-02-22T05:02:23,266 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-22T05:02:23,267 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-22T05:02:23,268 even if it does not contain any `.py` files. 2024-02-22T05:02:23,268 On the other hand, currently there is no concept of package data 2024-02-22T05:02:23,269 directory, all directories are treated like packages. 2024-02-22T05:02:23,269 ******************************************************************************** 2024-02-22T05:02:23,270 !! 2024-02-22T05:02:23,271 check.warn(importable) 2024-02-22T05:02:23,271 copying galaxy/py.typed -> build/lib/galaxy 2024-02-22T05:02:23,272 creating build/lib/galaxy/tool_util/xsd 2024-02-22T05:02:23,272 copying galaxy/tool_util/xsd/LICENSE -> build/lib/galaxy/tool_util/xsd 2024-02-22T05:02:23,273 copying galaxy/tool_util/xsd/README.md -> build/lib/galaxy/tool_util/xsd 2024-02-22T05:02:23,273 copying galaxy/tool_util/xsd/galaxy.jxb -> build/lib/galaxy/tool_util/xsd 2024-02-22T05:02:23,274 copying galaxy/tool_util/xsd/galaxy.xsd -> build/lib/galaxy/tool_util/xsd 2024-02-22T05:02:23,282 copying galaxy/tool_util/ontologies/biotools_mappings.tsv -> build/lib/galaxy/tool_util/ontologies 2024-02-22T05:02:23,286 copying galaxy/tool_util/ontologies/edam_operation_mappings.tsv -> build/lib/galaxy/tool_util/ontologies 2024-02-22T05:02:23,288 copying galaxy/tool_util/ontologies/edam_topic_mappings.tsv -> build/lib/galaxy/tool_util/ontologies 2024-02-22T05:02:23,290 copying galaxy/tool_util/verify/test_config.sample.yml -> build/lib/galaxy/tool_util/verify 2024-02-22T05:02:23,291 copying galaxy/tool_util/deps/mulled/invfile.lua -> build/lib/galaxy/tool_util/deps/mulled 2024-02-22T05:02:23,294 copying galaxy/tool_util/deps/resolvers/default_conda_mapping.yml -> build/lib/galaxy/tool_util/deps/resolvers 2024-02-22T05:02:23,295 copying galaxy/tool_util/toolbox/filters/examples.py.sample -> build/lib/galaxy/tool_util/toolbox/filters 2024-02-22T05:02:23,318 installing to build/bdist.linux-armv7l/wheel 2024-02-22T05:02:23,318 running install 2024-02-22T05:02:23,342 running install_lib 2024-02-22T05:02:23,348 creating build/bdist.linux-armv7l 2024-02-22T05:02:23,349 creating build/bdist.linux-armv7l/wheel 2024-02-22T05:02:23,351 creating build/bdist.linux-armv7l/wheel/galaxy 2024-02-22T05:02:23,352 copying build/lib/galaxy/py.typed -> build/bdist.linux-armv7l/wheel/galaxy 2024-02-22T05:02:23,353 copying build/lib/galaxy/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-02-22T05:02:23,356 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util 2024-02-22T05:02:23,357 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-02-22T05:02:23,358 copying build/lib/galaxy/tool_util/deps/dockerfiles.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-02-22T05:02:23,360 copying build/lib/galaxy/tool_util/deps/container_classes.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-02-22T05:02:23,363 copying build/lib/galaxy/tool_util/deps/containers.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-02-22T05:02:23,365 copying build/lib/galaxy/tool_util/deps/installable.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-02-22T05:02:23,367 copying build/lib/galaxy/tool_util/deps/dependencies.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-02-22T05:02:23,370 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/container_resolvers 2024-02-22T05:02:23,371 copying build/lib/galaxy/tool_util/deps/container_resolvers/explicit.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/container_resolvers 2024-02-22T05:02:23,373 copying build/lib/galaxy/tool_util/deps/container_resolvers/test.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/container_resolvers 2024-02-22T05:02:23,375 copying build/lib/galaxy/tool_util/deps/container_resolvers/mulled.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/container_resolvers 2024-02-22T05:02:23,378 copying build/lib/galaxy/tool_util/deps/container_resolvers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/container_resolvers 2024-02-22T05:02:23,380 copying build/lib/galaxy/tool_util/deps/conda_compat.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-02-22T05:02:23,382 copying build/lib/galaxy/tool_util/deps/brew_exts.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-02-22T05:02:23,384 copying build/lib/galaxy/tool_util/deps/brew_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-02-22T05:02:23,386 copying build/lib/galaxy/tool_util/deps/views.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-02-22T05:02:23,388 copying build/lib/galaxy/tool_util/deps/requirements.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-02-22T05:02:23,391 copying build/lib/galaxy/tool_util/deps/commands.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-02-22T05:02:23,393 copying build/lib/galaxy/tool_util/deps/container_volumes.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-02-22T05:02:23,395 copying build/lib/galaxy/tool_util/deps/docker_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-02-22T05:02:23,397 copying build/lib/galaxy/tool_util/deps/conda_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-02-22T05:02:23,400 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2024-02-22T05:02:23,401 copying build/lib/galaxy/tool_util/deps/mulled/get_tests.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2024-02-22T05:02:23,404 copying build/lib/galaxy/tool_util/deps/mulled/mulled_list.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2024-02-22T05:02:23,406 copying build/lib/galaxy/tool_util/deps/mulled/util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2024-02-22T05:02:23,409 copying build/lib/galaxy/tool_util/deps/mulled/mulled_build_files.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2024-02-22T05:02:23,410 copying build/lib/galaxy/tool_util/deps/mulled/_cli.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2024-02-22T05:02:23,412 copying build/lib/galaxy/tool_util/deps/mulled/mulled_search.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2024-02-22T05:02:23,415 copying build/lib/galaxy/tool_util/deps/mulled/mulled_build_channel.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2024-02-22T05:02:23,417 copying build/lib/galaxy/tool_util/deps/mulled/mulled_update_singularity_containers.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2024-02-22T05:02:23,419 copying build/lib/galaxy/tool_util/deps/mulled/mulled_build.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2024-02-22T05:02:23,422 copying build/lib/galaxy/tool_util/deps/mulled/mulled_hash.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2024-02-22T05:02:23,423 copying build/lib/galaxy/tool_util/deps/mulled/mulled_build_tool.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2024-02-22T05:02:23,425 copying build/lib/galaxy/tool_util/deps/mulled/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2024-02-22T05:02:23,427 copying build/lib/galaxy/tool_util/deps/mulled/invfile.lua -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2024-02-22T05:02:23,429 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2024-02-22T05:02:23,430 copying build/lib/galaxy/tool_util/deps/resolvers/tool_shed_packages.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2024-02-22T05:02:23,432 copying build/lib/galaxy/tool_util/deps/resolvers/default_conda_mapping.yml -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2024-02-22T05:02:23,434 copying build/lib/galaxy/tool_util/deps/resolvers/homebrew.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2024-02-22T05:02:23,436 copying build/lib/galaxy/tool_util/deps/resolvers/lmod.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2024-02-22T05:02:23,438 copying build/lib/galaxy/tool_util/deps/resolvers/galaxy_packages.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2024-02-22T05:02:23,440 copying build/lib/galaxy/tool_util/deps/resolvers/unlinked_tool_shed_packages.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2024-02-22T05:02:23,442 copying build/lib/galaxy/tool_util/deps/resolvers/modules.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2024-02-22T05:02:23,445 copying build/lib/galaxy/tool_util/deps/resolvers/resolver_mixins.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2024-02-22T05:02:23,447 copying build/lib/galaxy/tool_util/deps/resolvers/conda.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2024-02-22T05:02:23,449 copying build/lib/galaxy/tool_util/deps/resolvers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2024-02-22T05:02:23,452 copying build/lib/galaxy/tool_util/deps/resolvers/brewed_tool_shed_packages.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2024-02-22T05:02:23,454 copying build/lib/galaxy/tool_util/deps/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-02-22T05:02:23,456 copying build/lib/galaxy/tool_util/deps/singularity_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-02-22T05:02:23,459 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/ontologies 2024-02-22T05:02:23,460 copying build/lib/galaxy/tool_util/ontologies/ontology_data.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/ontologies 2024-02-22T05:02:23,462 copying build/lib/galaxy/tool_util/ontologies/edam_operation_mappings.tsv -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/ontologies 2024-02-22T05:02:23,464 copying build/lib/galaxy/tool_util/ontologies/biotools_mappings.tsv -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/ontologies 2024-02-22T05:02:23,467 copying build/lib/galaxy/tool_util/ontologies/edam_topic_mappings.tsv -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/ontologies 2024-02-22T05:02:23,469 copying build/lib/galaxy/tool_util/ontologies/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/ontologies 2024-02-22T05:02:23,471 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/data 2024-02-22T05:02:23,472 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/data/bundles 2024-02-22T05:02:23,473 copying build/lib/galaxy/tool_util/data/bundles/models.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/data/bundles 2024-02-22T05:02:23,475 copying build/lib/galaxy/tool_util/data/bundles/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/data/bundles 2024-02-22T05:02:23,477 copying build/lib/galaxy/tool_util/data/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/data 2024-02-22T05:02:23,480 copying build/lib/galaxy/tool_util/data/_schema.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/data 2024-02-22T05:02:23,482 copying build/lib/galaxy/tool_util/version.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util 2024-02-22T05:02:23,485 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/xsd 2024-02-22T05:02:23,486 copying build/lib/galaxy/tool_util/xsd/README.md -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/xsd 2024-02-22T05:02:23,488 copying build/lib/galaxy/tool_util/xsd/galaxy.jxb -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/xsd 2024-02-22T05:02:23,490 copying build/lib/galaxy/tool_util/xsd/LICENSE -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/xsd 2024-02-22T05:02:23,492 copying build/lib/galaxy/tool_util/xsd/galaxy.xsd -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/xsd 2024-02-22T05:02:23,501 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify 2024-02-22T05:02:23,502 copying build/lib/galaxy/tool_util/verify/script.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify 2024-02-22T05:02:23,506 copying build/lib/galaxy/tool_util/verify/interactor.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify 2024-02-22T05:02:23,510 copying build/lib/galaxy/tool_util/verify/test_data.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify 2024-02-22T05:02:23,512 copying build/lib/galaxy/tool_util/verify/test_config.sample.yml -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify 2024-02-22T05:02:23,514 copying build/lib/galaxy/tool_util/verify/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify 2024-02-22T05:02:23,517 copying build/lib/galaxy/tool_util/verify/wait.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify 2024-02-22T05:02:23,519 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2024-02-22T05:02:23,520 copying build/lib/galaxy/tool_util/verify/asserts/_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2024-02-22T05:02:23,522 copying build/lib/galaxy/tool_util/verify/asserts/hdf5.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2024-02-22T05:02:23,524 copying build/lib/galaxy/tool_util/verify/asserts/tabular.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2024-02-22T05:02:23,526 copying build/lib/galaxy/tool_util/verify/asserts/size.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2024-02-22T05:02:23,528 copying build/lib/galaxy/tool_util/verify/asserts/json.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2024-02-22T05:02:23,530 copying build/lib/galaxy/tool_util/verify/asserts/archive.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2024-02-22T05:02:23,532 copying build/lib/galaxy/tool_util/verify/asserts/xml.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2024-02-22T05:02:23,534 copying build/lib/galaxy/tool_util/verify/asserts/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2024-02-22T05:02:23,536 copying build/lib/galaxy/tool_util/verify/asserts/text.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2024-02-22T05:02:23,539 copying build/lib/galaxy/tool_util/lint.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util 2024-02-22T05:02:23,542 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/client 2024-02-22T05:02:23,543 copying build/lib/galaxy/tool_util/client/staging.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/client 2024-02-22T05:02:23,546 copying build/lib/galaxy/tool_util/client/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/client 2024-02-22T05:02:23,548 copying build/lib/galaxy/tool_util/edam_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util 2024-02-22T05:02:23,550 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/locations 2024-02-22T05:02:23,552 copying build/lib/galaxy/tool_util/locations/dockstore.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/locations 2024-02-22T05:02:23,554 copying build/lib/galaxy/tool_util/locations/http.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/locations 2024-02-22T05:02:23,556 copying build/lib/galaxy/tool_util/locations/file.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/locations 2024-02-22T05:02:23,558 copying build/lib/galaxy/tool_util/locations/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/locations 2024-02-22T05:02:23,561 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2024-02-22T05:02:23,562 copying build/lib/galaxy/tool_util/linters/_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2024-02-22T05:02:23,565 copying build/lib/galaxy/tool_util/linters/general.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2024-02-22T05:02:23,567 copying build/lib/galaxy/tool_util/linters/command.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2024-02-22T05:02:23,569 copying build/lib/galaxy/tool_util/linters/outputs.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2024-02-22T05:02:23,572 copying build/lib/galaxy/tool_util/linters/tests.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2024-02-22T05:02:23,575 copying build/lib/galaxy/tool_util/linters/xml_order.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2024-02-22T05:02:23,577 copying build/lib/galaxy/tool_util/linters/citations.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2024-02-22T05:02:23,580 copying build/lib/galaxy/tool_util/linters/cwl.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2024-02-22T05:02:23,583 copying build/lib/galaxy/tool_util/linters/stdio.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2024-02-22T05:02:23,586 copying build/lib/galaxy/tool_util/linters/help.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2024-02-22T05:02:23,589 copying build/lib/galaxy/tool_util/linters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2024-02-22T05:02:23,592 copying build/lib/galaxy/tool_util/linters/inputs.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2024-02-22T05:02:23,598 copying build/lib/galaxy/tool_util/output_checker.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util 2024-02-22T05:02:23,601 copying build/lib/galaxy/tool_util/fetcher.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util 2024-02-22T05:02:23,604 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2024-02-22T05:02:23,605 copying build/lib/galaxy/tool_util/parser/factory.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2024-02-22T05:02:23,609 copying build/lib/galaxy/tool_util/parser/util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2024-02-22T05:02:23,611 copying build/lib/galaxy/tool_util/parser/output_collection_def.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2024-02-22T05:02:23,614 copying build/lib/galaxy/tool_util/parser/output_objects.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2024-02-22T05:02:23,617 copying build/lib/galaxy/tool_util/parser/interface.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2024-02-22T05:02:23,621 copying build/lib/galaxy/tool_util/parser/xml.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2024-02-22T05:02:23,626 copying build/lib/galaxy/tool_util/parser/cwl.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2024-02-22T05:02:23,629 copying build/lib/galaxy/tool_util/parser/stdio.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2024-02-22T05:02:23,632 copying build/lib/galaxy/tool_util/parser/yaml.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2024-02-22T05:02:23,636 copying build/lib/galaxy/tool_util/parser/output_actions.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2024-02-22T05:02:23,640 copying build/lib/galaxy/tool_util/parser/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2024-02-22T05:02:23,643 copying build/lib/galaxy/tool_util/loader_directory.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util 2024-02-22T05:02:23,646 copying build/lib/galaxy/tool_util/provided_metadata.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util 2024-02-22T05:02:23,649 copying build/lib/galaxy/tool_util/loader.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util 2024-02-22T05:02:23,653 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2024-02-22T05:02:23,654 copying build/lib/galaxy/tool_util/cwl/representation.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2024-02-22T05:02:23,658 copying build/lib/galaxy/tool_util/cwl/schema.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2024-02-22T05:02:23,660 copying build/lib/galaxy/tool_util/cwl/util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2024-02-22T05:02:23,663 copying build/lib/galaxy/tool_util/cwl/runnable.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2024-02-22T05:02:23,666 copying build/lib/galaxy/tool_util/cwl/cwltool_deps.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2024-02-22T05:02:23,669 copying build/lib/galaxy/tool_util/cwl/parser.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2024-02-22T05:02:23,673 copying build/lib/galaxy/tool_util/cwl/runtime_actions.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2024-02-22T05:02:23,676 copying build/lib/galaxy/tool_util/cwl/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2024-02-22T05:02:23,679 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox 2024-02-22T05:02:23,680 copying build/lib/galaxy/tool_util/toolbox/base.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox 2024-02-22T05:02:23,683 copying build/lib/galaxy/tool_util/toolbox/watcher.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox 2024-02-22T05:02:23,686 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views 2024-02-22T05:02:23,687 copying build/lib/galaxy/tool_util/toolbox/views/definitions.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views 2024-02-22T05:02:23,689 copying build/lib/galaxy/tool_util/toolbox/views/interface.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views 2024-02-22T05:02:23,692 copying build/lib/galaxy/tool_util/toolbox/views/static.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views 2024-02-22T05:02:23,695 copying build/lib/galaxy/tool_util/toolbox/views/edam.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views 2024-02-22T05:02:23,697 copying build/lib/galaxy/tool_util/toolbox/views/sources.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views 2024-02-22T05:02:23,699 copying build/lib/galaxy/tool_util/toolbox/views/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views 2024-02-22T05:02:23,701 copying build/lib/galaxy/tool_util/toolbox/integrated_panel.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox 2024-02-22T05:02:23,704 copying build/lib/galaxy/tool_util/toolbox/panel.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox 2024-02-22T05:02:23,707 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/filters 2024-02-22T05:02:23,708 copying build/lib/galaxy/tool_util/toolbox/filters/examples.py.sample -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/filters 2024-02-22T05:02:23,711 copying build/lib/galaxy/tool_util/toolbox/filters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/filters 2024-02-22T05:02:23,713 copying build/lib/galaxy/tool_util/toolbox/parser.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox 2024-02-22T05:02:23,716 copying build/lib/galaxy/tool_util/toolbox/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox 2024-02-22T05:02:23,718 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/lineages 2024-02-22T05:02:23,720 copying build/lib/galaxy/tool_util/toolbox/lineages/factory.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/lineages 2024-02-22T05:02:23,722 copying build/lib/galaxy/tool_util/toolbox/lineages/interface.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/lineages 2024-02-22T05:02:23,725 copying build/lib/galaxy/tool_util/toolbox/lineages/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/lineages 2024-02-22T05:02:23,728 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/biotools 2024-02-22T05:02:23,729 copying build/lib/galaxy/tool_util/biotools/interface.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/biotools 2024-02-22T05:02:23,731 copying build/lib/galaxy/tool_util/biotools/source.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/biotools 2024-02-22T05:02:23,734 copying build/lib/galaxy/tool_util/biotools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/biotools 2024-02-22T05:02:23,736 copying build/lib/galaxy/tool_util/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util 2024-02-22T05:02:23,739 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/unittest_utils 2024-02-22T05:02:23,740 copying build/lib/galaxy/tool_util/unittest_utils/interactor.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/unittest_utils 2024-02-22T05:02:23,742 copying build/lib/galaxy/tool_util/unittest_utils/sample_data.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/unittest_utils 2024-02-22T05:02:23,744 copying build/lib/galaxy/tool_util/unittest_utils/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/unittest_utils 2024-02-22T05:02:23,747 running install_egg_info 2024-02-22T05:02:23,758 Copying galaxy_tool_util.egg-info to build/bdist.linux-armv7l/wheel/galaxy_tool_util-23.2.1-py3.11.egg-info 2024-02-22T05:02:23,772 running install_scripts 2024-02-22T05:02:23,793 creating build/bdist.linux-armv7l/wheel/galaxy_tool_util-23.2.1.dist-info/WHEEL 2024-02-22T05:02:23,796 creating '/tmp/pip-wheel-cmwz9zmh/.tmp-u8_v5kbd/galaxy_tool_util-23.2.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-02-22T05:02:23,799 adding 'galaxy/__init__.py' 2024-02-22T05:02:23,800 adding 'galaxy/py.typed' 2024-02-22T05:02:23,803 adding 'galaxy/tool_util/__init__.py' 2024-02-22T05:02:23,805 adding 'galaxy/tool_util/edam_util.py' 2024-02-22T05:02:23,806 adding 'galaxy/tool_util/fetcher.py' 2024-02-22T05:02:23,809 adding 'galaxy/tool_util/lint.py' 2024-02-22T05:02:23,810 adding 'galaxy/tool_util/loader.py' 2024-02-22T05:02:23,813 adding 'galaxy/tool_util/loader_directory.py' 2024-02-22T05:02:23,815 adding 'galaxy/tool_util/output_checker.py' 2024-02-22T05:02:23,817 adding 'galaxy/tool_util/provided_metadata.py' 2024-02-22T05:02:23,819 adding 'galaxy/tool_util/version.py' 2024-02-22T05:02:23,821 adding 'galaxy/tool_util/biotools/__init__.py' 2024-02-22T05:02:23,823 adding 'galaxy/tool_util/biotools/interface.py' 2024-02-22T05:02:23,825 adding 'galaxy/tool_util/biotools/source.py' 2024-02-22T05:02:23,827 adding 'galaxy/tool_util/client/__init__.py' 2024-02-22T05:02:23,829 adding 'galaxy/tool_util/client/staging.py' 2024-02-22T05:02:23,831 adding 'galaxy/tool_util/cwl/__init__.py' 2024-02-22T05:02:23,833 adding 'galaxy/tool_util/cwl/cwltool_deps.py' 2024-02-22T05:02:23,839 adding 'galaxy/tool_util/cwl/parser.py' 2024-02-22T05:02:23,842 adding 'galaxy/tool_util/cwl/representation.py' 2024-02-22T05:02:23,844 adding 'galaxy/tool_util/cwl/runnable.py' 2024-02-22T05:02:23,846 adding 'galaxy/tool_util/cwl/runtime_actions.py' 2024-02-22T05:02:23,848 adding 'galaxy/tool_util/cwl/schema.py' 2024-02-22T05:02:23,852 adding 'galaxy/tool_util/cwl/util.py' 2024-02-22T05:02:23,860 adding 'galaxy/tool_util/data/__init__.py' 2024-02-22T05:02:23,862 adding 'galaxy/tool_util/data/_schema.py' 2024-02-22T05:02:23,864 adding 'galaxy/tool_util/data/bundles/__init__.py' 2024-02-22T05:02:23,866 adding 'galaxy/tool_util/data/bundles/models.py' 2024-02-22T05:02:23,870 adding 'galaxy/tool_util/deps/__init__.py' 2024-02-22T05:02:23,873 adding 'galaxy/tool_util/deps/brew_exts.py' 2024-02-22T05:02:23,875 adding 'galaxy/tool_util/deps/brew_util.py' 2024-02-22T05:02:23,876 adding 'galaxy/tool_util/deps/commands.py' 2024-02-22T05:02:23,878 adding 'galaxy/tool_util/deps/conda_compat.py' 2024-02-22T05:02:23,882 adding 'galaxy/tool_util/deps/conda_util.py' 2024-02-22T05:02:23,885 adding 'galaxy/tool_util/deps/container_classes.py' 2024-02-22T05:02:23,887 adding 'galaxy/tool_util/deps/container_volumes.py' 2024-02-22T05:02:23,890 adding 'galaxy/tool_util/deps/containers.py' 2024-02-22T05:02:23,892 adding 'galaxy/tool_util/deps/dependencies.py' 2024-02-22T05:02:23,894 adding 'galaxy/tool_util/deps/docker_util.py' 2024-02-22T05:02:23,896 adding 'galaxy/tool_util/deps/dockerfiles.py' 2024-02-22T05:02:23,898 adding 'galaxy/tool_util/deps/installable.py' 2024-02-22T05:02:23,900 adding 'galaxy/tool_util/deps/requirements.py' 2024-02-22T05:02:23,902 adding 'galaxy/tool_util/deps/singularity_util.py' 2024-02-22T05:02:23,905 adding 'galaxy/tool_util/deps/views.py' 2024-02-22T05:02:23,907 adding 'galaxy/tool_util/deps/container_resolvers/__init__.py' 2024-02-22T05:02:23,909 adding 'galaxy/tool_util/deps/container_resolvers/explicit.py' 2024-02-22T05:02:23,913 adding 'galaxy/tool_util/deps/container_resolvers/mulled.py' 2024-02-22T05:02:23,915 adding 'galaxy/tool_util/deps/container_resolvers/test.py' 2024-02-22T05:02:23,917 adding 'galaxy/tool_util/deps/mulled/__init__.py' 2024-02-22T05:02:23,919 adding 'galaxy/tool_util/deps/mulled/_cli.py' 2024-02-22T05:02:23,921 adding 'galaxy/tool_util/deps/mulled/get_tests.py' 2024-02-22T05:02:23,923 adding 'galaxy/tool_util/deps/mulled/invfile.lua' 2024-02-22T05:02:23,926 adding 'galaxy/tool_util/deps/mulled/mulled_build.py' 2024-02-22T05:02:23,929 adding 'galaxy/tool_util/deps/mulled/mulled_build_channel.py' 2024-02-22T05:02:23,930 adding 'galaxy/tool_util/deps/mulled/mulled_build_files.py' 2024-02-22T05:02:23,932 adding 'galaxy/tool_util/deps/mulled/mulled_build_tool.py' 2024-02-22T05:02:23,933 adding 'galaxy/tool_util/deps/mulled/mulled_hash.py' 2024-02-22T05:02:23,935 adding 'galaxy/tool_util/deps/mulled/mulled_list.py' 2024-02-22T05:02:23,937 adding 'galaxy/tool_util/deps/mulled/mulled_search.py' 2024-02-22T05:02:23,939 adding 'galaxy/tool_util/deps/mulled/mulled_update_singularity_containers.py' 2024-02-22T05:02:23,941 adding 'galaxy/tool_util/deps/mulled/util.py' 2024-02-22T05:02:23,944 adding 'galaxy/tool_util/deps/resolvers/__init__.py' 2024-02-22T05:02:23,946 adding 'galaxy/tool_util/deps/resolvers/brewed_tool_shed_packages.py' 2024-02-22T05:02:23,948 adding 'galaxy/tool_util/deps/resolvers/conda.py' 2024-02-22T05:02:23,949 adding 'galaxy/tool_util/deps/resolvers/default_conda_mapping.yml' 2024-02-22T05:02:23,951 adding 'galaxy/tool_util/deps/resolvers/galaxy_packages.py' 2024-02-22T05:02:23,952 adding 'galaxy/tool_util/deps/resolvers/homebrew.py' 2024-02-22T05:02:23,954 adding 'galaxy/tool_util/deps/resolvers/lmod.py' 2024-02-22T05:02:23,956 adding 'galaxy/tool_util/deps/resolvers/modules.py' 2024-02-22T05:02:23,957 adding 'galaxy/tool_util/deps/resolvers/resolver_mixins.py' 2024-02-22T05:02:23,958 adding 'galaxy/tool_util/deps/resolvers/tool_shed_packages.py' 2024-02-22T05:02:23,960 adding 'galaxy/tool_util/deps/resolvers/unlinked_tool_shed_packages.py' 2024-02-22T05:02:23,962 adding 'galaxy/tool_util/linters/__init__.py' 2024-02-22T05:02:23,963 adding 'galaxy/tool_util/linters/_util.py' 2024-02-22T05:02:23,964 adding 'galaxy/tool_util/linters/citations.py' 2024-02-22T05:02:23,965 adding 'galaxy/tool_util/linters/command.py' 2024-02-22T05:02:23,967 adding 'galaxy/tool_util/linters/cwl.py' 2024-02-22T05:02:23,968 adding 'galaxy/tool_util/linters/general.py' 2024-02-22T05:02:23,969 adding 'galaxy/tool_util/linters/help.py' 2024-02-22T05:02:23,972 adding 'galaxy/tool_util/linters/inputs.py' 2024-02-22T05:02:23,974 adding 'galaxy/tool_util/linters/outputs.py' 2024-02-22T05:02:23,975 adding 'galaxy/tool_util/linters/stdio.py' 2024-02-22T05:02:23,977 adding 'galaxy/tool_util/linters/tests.py' 2024-02-22T05:02:23,979 adding 'galaxy/tool_util/linters/xml_order.py' 2024-02-22T05:02:23,980 adding 'galaxy/tool_util/locations/__init__.py' 2024-02-22T05:02:23,982 adding 'galaxy/tool_util/locations/dockstore.py' 2024-02-22T05:02:23,983 adding 'galaxy/tool_util/locations/file.py' 2024-02-22T05:02:23,984 adding 'galaxy/tool_util/locations/http.py' 2024-02-22T05:02:23,986 adding 'galaxy/tool_util/ontologies/__init__.py' 2024-02-22T05:02:23,991 adding 'galaxy/tool_util/ontologies/biotools_mappings.tsv' 2024-02-22T05:02:23,993 adding 'galaxy/tool_util/ontologies/edam_operation_mappings.tsv' 2024-02-22T05:02:23,994 adding 'galaxy/tool_util/ontologies/edam_topic_mappings.tsv' 2024-02-22T05:02:23,996 adding 'galaxy/tool_util/ontologies/ontology_data.py' 2024-02-22T05:02:23,998 adding 'galaxy/tool_util/parser/__init__.py' 2024-02-22T05:02:23,999 adding 'galaxy/tool_util/parser/cwl.py' 2024-02-22T05:02:24,001 adding 'galaxy/tool_util/parser/factory.py' 2024-02-22T05:02:24,004 adding 'galaxy/tool_util/parser/interface.py' 2024-02-22T05:02:24,007 adding 'galaxy/tool_util/parser/output_actions.py' 2024-02-22T05:02:24,008 adding 'galaxy/tool_util/parser/output_collection_def.py' 2024-02-22T05:02:24,011 adding 'galaxy/tool_util/parser/output_objects.py' 2024-02-22T05:02:24,013 adding 'galaxy/tool_util/parser/stdio.py' 2024-02-22T05:02:24,014 adding 'galaxy/tool_util/parser/util.py' 2024-02-22T05:02:24,021 adding 'galaxy/tool_util/parser/xml.py' 2024-02-22T05:02:24,023 adding 'galaxy/tool_util/parser/yaml.py' 2024-02-22T05:02:24,025 adding 'galaxy/tool_util/toolbox/__init__.py' 2024-02-22T05:02:24,033 adding 'galaxy/tool_util/toolbox/base.py' 2024-02-22T05:02:24,035 adding 'galaxy/tool_util/toolbox/integrated_panel.py' 2024-02-22T05:02:24,038 adding 'galaxy/tool_util/toolbox/panel.py' 2024-02-22T05:02:24,039 adding 'galaxy/tool_util/toolbox/parser.py' 2024-02-22T05:02:24,041 adding 'galaxy/tool_util/toolbox/watcher.py' 2024-02-22T05:02:24,043 adding 'galaxy/tool_util/toolbox/filters/__init__.py' 2024-02-22T05:02:24,045 adding 'galaxy/tool_util/toolbox/filters/examples.py.sample' 2024-02-22T05:02:24,047 adding 'galaxy/tool_util/toolbox/lineages/__init__.py' 2024-02-22T05:02:24,048 adding 'galaxy/tool_util/toolbox/lineages/factory.py' 2024-02-22T05:02:24,050 adding 'galaxy/tool_util/toolbox/lineages/interface.py' 2024-02-22T05:02:24,051 adding 'galaxy/tool_util/toolbox/views/__init__.py' 2024-02-22T05:02:24,053 adding 'galaxy/tool_util/toolbox/views/definitions.py' 2024-02-22T05:02:24,054 adding 'galaxy/tool_util/toolbox/views/edam.py' 2024-02-22T05:02:24,056 adding 'galaxy/tool_util/toolbox/views/interface.py' 2024-02-22T05:02:24,057 adding 'galaxy/tool_util/toolbox/views/sources.py' 2024-02-22T05:02:24,059 adding 'galaxy/tool_util/toolbox/views/static.py' 2024-02-22T05:02:24,060 adding 'galaxy/tool_util/unittest_utils/__init__.py' 2024-02-22T05:02:24,062 adding 'galaxy/tool_util/unittest_utils/interactor.py' 2024-02-22T05:02:24,063 adding 'galaxy/tool_util/unittest_utils/sample_data.py' 2024-02-22T05:02:24,066 adding 'galaxy/tool_util/verify/__init__.py' 2024-02-22T05:02:24,075 adding 'galaxy/tool_util/verify/interactor.py' 2024-02-22T05:02:24,079 adding 'galaxy/tool_util/verify/script.py' 2024-02-22T05:02:24,080 adding 'galaxy/tool_util/verify/test_config.sample.yml' 2024-02-22T05:02:24,082 adding 'galaxy/tool_util/verify/test_data.py' 2024-02-22T05:02:24,083 adding 'galaxy/tool_util/verify/wait.py' 2024-02-22T05:02:24,085 adding 'galaxy/tool_util/verify/asserts/__init__.py' 2024-02-22T05:02:24,087 adding 'galaxy/tool_util/verify/asserts/_util.py' 2024-02-22T05:02:24,088 adding 'galaxy/tool_util/verify/asserts/archive.py' 2024-02-22T05:02:24,089 adding 'galaxy/tool_util/verify/asserts/hdf5.py' 2024-02-22T05:02:24,091 adding 'galaxy/tool_util/verify/asserts/json.py' 2024-02-22T05:02:24,092 adding 'galaxy/tool_util/verify/asserts/size.py' 2024-02-22T05:02:24,093 adding 'galaxy/tool_util/verify/asserts/tabular.py' 2024-02-22T05:02:24,095 adding 'galaxy/tool_util/verify/asserts/text.py' 2024-02-22T05:02:24,096 adding 'galaxy/tool_util/verify/asserts/xml.py' 2024-02-22T05:02:24,098 adding 'galaxy/tool_util/xsd/LICENSE' 2024-02-22T05:02:24,100 adding 'galaxy/tool_util/xsd/README.md' 2024-02-22T05:02:24,101 adding 'galaxy/tool_util/xsd/galaxy.jxb' 2024-02-22T05:02:24,137 adding 'galaxy/tool_util/xsd/galaxy.xsd' 2024-02-22T05:02:24,142 adding 'galaxy_tool_util-23.2.1.dist-info/LICENSE' 2024-02-22T05:02:24,144 adding 'galaxy_tool_util-23.2.1.dist-info/METADATA' 2024-02-22T05:02:24,145 adding 'galaxy_tool_util-23.2.1.dist-info/WHEEL' 2024-02-22T05:02:24,146 adding 'galaxy_tool_util-23.2.1.dist-info/entry_points.txt' 2024-02-22T05:02:24,148 adding 'galaxy_tool_util-23.2.1.dist-info/top_level.txt' 2024-02-22T05:02:24,150 adding 'galaxy_tool_util-23.2.1.dist-info/RECORD' 2024-02-22T05:02:24,157 removing build/bdist.linux-armv7l/wheel 2024-02-22T05:02:24,292 Building wheel for galaxy-tool-util (pyproject.toml): finished with status 'done' 2024-02-22T05:02:24,305 Created wheel for galaxy-tool-util: filename=galaxy_tool_util-23.2.1-py3-none-any.whl size=409073 sha256=d693c91ba9a264e4f12b4c75e9f4e420fb3560f86f3a048f92a5b05918cb8b28 2024-02-22T05:02:24,306 Stored in directory: /tmp/pip-ephem-wheel-cache-5iecvd4d/wheels/83/4a/4d/842e54fc39779f7b4e45c9bf744d5f1ad4bd6331a147cfa94c 2024-02-22T05:02:24,324 Successfully built galaxy-tool-util 2024-02-22T05:02:24,341 Removed build tracker: '/tmp/pip-build-tracker-u042rss0'