2024-02-22T05:03:03,132 Created temporary directory: /tmp/pip-build-tracker-v3pg13tr 2024-02-22T05:03:03,134 Initialized build tracking at /tmp/pip-build-tracker-v3pg13tr 2024-02-22T05:03:03,134 Created build tracker: /tmp/pip-build-tracker-v3pg13tr 2024-02-22T05:03:03,135 Entered build tracker: /tmp/pip-build-tracker-v3pg13tr 2024-02-22T05:03:03,135 Created temporary directory: /tmp/pip-wheel-lyugudaw 2024-02-22T05:03:03,139 Created temporary directory: /tmp/pip-ephem-wheel-cache-g34v7kc3 2024-02-22T05:03:03,163 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-02-22T05:03:03,166 2 location(s) to search for versions of galaxy-app: 2024-02-22T05:03:03,166 * https://pypi.org/simple/galaxy-app/ 2024-02-22T05:03:03,166 * https://www.piwheels.org/simple/galaxy-app/ 2024-02-22T05:03:03,167 Fetching project page and analyzing links: https://pypi.org/simple/galaxy-app/ 2024-02-22T05:03:03,168 Getting page https://pypi.org/simple/galaxy-app/ 2024-02-22T05:03:03,169 Found index url https://pypi.org/simple/ 2024-02-22T05:03:03,386 Fetched page https://pypi.org/simple/galaxy-app/ as application/vnd.pypi.simple.v1+json 2024-02-22T05:03:03,392 Found link https://files.pythonhosted.org/packages/cd/3d/994b7f4faaee2a95a31af125e96734f3daa9f39e6decd0f7a09950ef686c/galaxy-app-20.5.0.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 20.5.0 2024-02-22T05:03:03,393 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/0e/45/8db530ec699e0de1e6307285126e8bba3dca8ffe575e9994b0c56aa01e35/galaxy_app-20.5.0-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) 2024-02-22T05:03:03,394 Found link https://files.pythonhosted.org/packages/39/7b/ed47204e833f922db4fc7e96d8de33650a57856999b95145a9e5414270b1/galaxy-app-20.9.0.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 20.9.0 2024-02-22T05:03:03,394 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/74/6e/cd07342b2790bc4ec0f3d03eb559fdee76513d00657c2897ad5517615704/galaxy_app-20.9.0-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) 2024-02-22T05:03:03,395 Found link https://files.pythonhosted.org/packages/bb/d4/bbe8b30220b07000291c571508565a6b2c803c8b3580f4edb50dec7dfb25/galaxy-app-21.9.0.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 21.9.0 2024-02-22T05:03:03,395 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/2a/c8/f3c20efbe004b6968ac2f89cfc60e77d96b0a45844d864f7d4f84e985b6e/galaxy_app-21.9.0-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) 2024-02-22T05:03:03,396 Found link https://files.pythonhosted.org/packages/ac/8b/73350a0f611102667eabde41fa8bcd6ffb49ed5a726f6077366504f8bb42/galaxy-app-22.1.1.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 22.1.1 2024-02-22T05:03:03,397 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/e4/40/ca62a2cd45b022310bd0d4ce05f5ed3d59e8f994d19e31c3fc0410da4b45/galaxy_app-22.1.1-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) 2024-02-22T05:03:03,398 Found link https://files.pythonhosted.org/packages/89/47/4d9cc66c90213feb9f0a8e10fcea2ab93f66d90f289f5e0d72ef6dafcab9/galaxy-app-23.0.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.1 2024-02-22T05:03:03,398 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/d6/1d/9c9721f6bdcb3de36c2f9946af6639696d33f43a3934d9edd95f00d349e5/galaxy_app-23.0.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-02-22T05:03:03,399 Found link https://files.pythonhosted.org/packages/fc/5e/993fc4df93a146b8e11719fd70d92dddf4b5a2e14c2a5006ad5c7320857e/galaxy-app-23.0.2.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.2 2024-02-22T05:03:03,400 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/7c/cf/3e8752a5c5858f6a096a04d57f31653c5fdbdcb0740ec4f00d29db037a65/galaxy_app-23.0.2-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-02-22T05:03:03,401 Found link https://files.pythonhosted.org/packages/86/9a/1c845471521630df79226096bed68473fe2e355985ac4c2830ee0f2d6420/galaxy-app-23.0.3.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.3 2024-02-22T05:03:03,402 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/08/19/3c5252502bf8984448c6713825aea0efb9ba4de747eb073568b2679afc94/galaxy_app-23.0.3-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-02-22T05:03:03,403 Found link https://files.pythonhosted.org/packages/7b/69/05dfb348db46268dfd2096cea8f42d37bb0d5f6e55202f684607fc4fa1e2/galaxy-app-23.0.4.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.4 2024-02-22T05:03:03,403 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/12/d3/cd3e8e4b280236df34705ac5745d6cb657593b9b6064e6980df863dbfba0/galaxy_app-23.0.4-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-02-22T05:03:03,404 Found link https://files.pythonhosted.org/packages/9f/d5/eca55f6fa4a9147f5b72dd6a593a0c36280f2bc3a5bf95d95cb4112f92a8/galaxy-app-23.0.5.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.5 2024-02-22T05:03:03,405 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/d4/26/d168ceb65d4c9d6ef67c88f061d8eb88d7e845a2f10f10b7d1270d5acb37/galaxy_app-23.0.5-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-02-22T05:03:03,406 Found link https://files.pythonhosted.org/packages/86/9e/41165df0dabc7ff036d7a2daa00fe555770e7dbfb1e208f2847d756be48c/galaxy-app-23.0.6.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.6 2024-02-22T05:03:03,406 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/e8/73/abf8595c6097c3b6ffbe95cd4cdbf404a5cf6ad7b292545cc4d1cb87d4a0/galaxy_app-23.0.6-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-02-22T05:03:03,407 Found link https://files.pythonhosted.org/packages/41/07/083718b816053a9f97e5e678ac9bed14b31d3a224026170e58be13f37fba/galaxy-app-23.1.dev0.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.dev0 2024-02-22T05:03:03,408 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/7a/89/50a4575db66b638bee6f241f902f556eaa27855d7f0fd3323551bdb09f5d/galaxy_app-23.1.dev0-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-02-22T05:03:03,409 Found link https://files.pythonhosted.org/packages/96/67/be959ad3f838e23eec1821ba494202846a79ed3add7f603feab6a46e21f3/galaxy-app-23.1.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.1 2024-02-22T05:03:03,410 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/c8/f7/a84fe8d48fb96f5e96981ca3f60491f856efa4f2463722fa75ad8dcec7a7/galaxy_app-23.1.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-02-22T05:03:03,411 Found link https://files.pythonhosted.org/packages/ad/a6/798ae0b3aa469f382a3b4350fc394ebe60559177717140e48f97ae81d4a3/galaxy-app-23.1.2.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.2 2024-02-22T05:03:03,412 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/54/ef/8264cbce6eca0cd434001d62c838cd4798aa478a6af7879b83299c28193d/galaxy_app-23.1.2-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-02-22T05:03:03,412 Found link https://files.pythonhosted.org/packages/26/ba/0995031cda92688ec41ab4ad0cc11b148fd5caecf21e414928464bea82f8/galaxy-app-23.1.3.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.3 2024-02-22T05:03:03,413 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/03/0f/747509841f1baad002247bb2956344ce1ebb9703ab941c149f5456b32c31/galaxy_app-23.1.3-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-02-22T05:03:03,415 Found link https://files.pythonhosted.org/packages/de/63/8be8d20cf1c913da72f9b69af53b711dccc0a998718c2abf93349bdf5301/galaxy-app-23.1.4.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.4 2024-02-22T05:03:03,415 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/60/97/43d48dc8d2d332faab8a4439b68c7cbbd528f7b9d48c8a0092d60cc5124d/galaxy_app-23.1.4-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-02-22T05:03:03,416 Found link https://files.pythonhosted.org/packages/2f/6c/b024d7c86132a8926709338c49bef02ac75821d997e60030744cf4e65ed0/galaxy-app-23.2.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.2.1 2024-02-22T05:03:03,417 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/b9/89/c6d435aa81c1e8bfc9a11ffe2ce1212d1f7251be748aa684ad150a337b25/galaxy_app-23.2.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-02-22T05:03:03,418 Fetching project page and analyzing links: https://www.piwheels.org/simple/galaxy-app/ 2024-02-22T05:03:03,418 Getting page https://www.piwheels.org/simple/galaxy-app/ 2024-02-22T05:03:03,420 Found index url https://www.piwheels.org/simple/ 2024-02-22T05:03:03,578 Fetched page https://www.piwheels.org/simple/galaxy-app/ as text/html 2024-02-22T05:03:03,582 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.1.4-py3-none-any.whl#sha256=a0d156aebf5163d1c632ec4c512d86f60cd8848ff63bfdee5e72f0b2b1ea9942 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-02-22T05:03:03,583 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.1.3-py3-none-any.whl#sha256=31efbe6b15793cf934e6d3fa0acf8fa040a1110373f2af602c1384f2fddc61a5 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-02-22T05:03:03,584 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.1.2-py3-none-any.whl#sha256=af60799c6e1c91da02a7b4d1dc70fa1285c49cbb474f15dad9f74fc50ef0d214 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-02-22T05:03:03,584 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.1.1-py3-none-any.whl#sha256=c2a889aa873a367630a84277ea40ae425c8ccfb9d29770e60ed120e11f16287b (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-02-22T05:03:03,585 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.1.dev0-py3-none-any.whl#sha256=c9198ae7cb3065b124471a6e7c9b40207d05b9dd860896249bd107558b62eabd (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-02-22T05:03:03,586 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.6-py3-none-any.whl#sha256=2c529481de193d71a8c059551d9713d602fa4e7817856a393fc657711fd26a80 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-02-22T05:03:03,587 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.5-py3-none-any.whl#sha256=1e9b1a29eee6bf66924f5da034af625e193ea4f7fe6585b2fee5379f94add213 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-02-22T05:03:03,587 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.4-py3-none-any.whl#sha256=0645d80a13b5594f7067c91e672962bdc25e46a38081f18d11d0aeaa34f8ee3d (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-02-22T05:03:03,588 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.3-py3-none-any.whl#sha256=a65f158d80ecabd0d612e24816a2e517007a19648a67381bdee48058c8236014 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-02-22T05:03:03,589 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.2-py3-none-any.whl#sha256=09f32912adb5c90cdbbcc5e2f3168a54501cb7595d207b2e660e4235e7e46067 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-02-22T05:03:03,589 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.1-py3-none-any.whl#sha256=e16745e48d15e5e5cb83991066b1e2dcb2333d49dac992e2601b9fc6af8f45a4 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-02-22T05:03:03,589 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-20.9.0-py2.py3-none-any.whl#sha256=d6b3897be5b3c63e0c7f914f9ce7df087cb3df8fa6d55b1475c7d933cdb09a29 (from https://www.piwheels.org/simple/galaxy-app/) 2024-02-22T05:03:03,590 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-20.5.0-py2.py3-none-any.whl#sha256=2aa533c8296a5843fd06ce934c7c817845b12286e6b62fb94bb685f0259d9ad0 (from https://www.piwheels.org/simple/galaxy-app/) 2024-02-22T05:03:03,591 Skipping link: not a file: https://www.piwheels.org/simple/galaxy-app/ 2024-02-22T05:03:03,591 Skipping link: not a file: https://pypi.org/simple/galaxy-app/ 2024-02-22T05:03:03,611 Given no hashes to check 1 links for project 'galaxy-app': discarding no candidates 2024-02-22T05:03:03,629 Collecting galaxy-app==23.2.1 2024-02-22T05:03:03,631 Created temporary directory: /tmp/pip-unpack-1m_dmq_1 2024-02-22T05:03:03,870 Downloading galaxy-app-23.2.1.tar.gz (1.1 MB) 2024-02-22T05:03:05,511 Added galaxy-app==23.2.1 from https://files.pythonhosted.org/packages/2f/6c/b024d7c86132a8926709338c49bef02ac75821d997e60030744cf4e65ed0/galaxy-app-23.2.1.tar.gz to build tracker '/tmp/pip-build-tracker-v3pg13tr' 2024-02-22T05:03:05,514 Created temporary directory: /tmp/pip-build-env-nkk3hlxu 2024-02-22T05:03:05,518 Installing build dependencies: started 2024-02-22T05:03:05,520 Running command pip subprocess to install build dependencies 2024-02-22T05:03:06,692 Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-02-22T05:03:07,191 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-02-22T05:03:09,551 Collecting setuptools 2024-02-22T05:03:11,744 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.1.0-py3-none-any.whl (819 kB) 2024-02-22T05:03:15,034 Installing collected packages: setuptools 2024-02-22T05:03:17,341 Successfully installed setuptools-69.1.0 2024-02-22T05:03:17,596 [notice] A new release of pip is available: 23.3.1 -> 24.0 2024-02-22T05:03:17,597 [notice] To update, run: python3 -m pip install --upgrade pip 2024-02-22T05:03:17,859 Installing build dependencies: finished with status 'done' 2024-02-22T05:03:17,863 Getting requirements to build wheel: started 2024-02-22T05:03:17,864 Running command Getting requirements to build wheel 2024-02-22T05:03:18,506 running egg_info 2024-02-22T05:03:18,509 writing galaxy_app.egg-info/PKG-INFO 2024-02-22T05:03:18,515 writing dependency_links to galaxy_app.egg-info/dependency_links.txt 2024-02-22T05:03:18,517 writing entry points to galaxy_app.egg-info/entry_points.txt 2024-02-22T05:03:18,519 writing requirements to galaxy_app.egg-info/requires.txt 2024-02-22T05:03:18,521 writing top-level names to galaxy_app.egg-info/top_level.txt 2024-02-22T05:03:18,598 reading manifest file 'galaxy_app.egg-info/SOURCES.txt' 2024-02-22T05:03:18,645 reading manifest template 'MANIFEST.in' 2024-02-22T05:03:19,133 adding license file 'LICENSE' 2024-02-22T05:03:19,161 writing manifest file 'galaxy_app.egg-info/SOURCES.txt' 2024-02-22T05:03:19,239 Getting requirements to build wheel: finished with status 'done' 2024-02-22T05:03:19,246 Installing backend dependencies: started 2024-02-22T05:03:19,248 Running command pip subprocess to install backend dependencies 2024-02-22T05:03:20,380 Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-02-22T05:03:20,911 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-02-22T05:03:21,384 Collecting wheel 2024-02-22T05:03:21,409 Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB) 2024-02-22T05:03:23,645 Installing collected packages: wheel 2024-02-22T05:03:23,868 Creating /tmp/pip-build-env-nkk3hlxu/normal/local/bin 2024-02-22T05:03:23,870 changing mode of /tmp/pip-build-env-nkk3hlxu/normal/local/bin/wheel to 755 2024-02-22T05:03:23,882 Successfully installed wheel-0.42.0 2024-02-22T05:03:24,135 [notice] A new release of pip is available: 23.3.1 -> 24.0 2024-02-22T05:03:24,136 [notice] To update, run: python3 -m pip install --upgrade pip 2024-02-22T05:03:24,363 Installing backend dependencies: finished with status 'done' 2024-02-22T05:03:24,364 Created temporary directory: /tmp/pip-modern-metadata-ydsbs4cr 2024-02-22T05:03:24,366 Preparing metadata (pyproject.toml): started 2024-02-22T05:03:24,368 Running command Preparing metadata (pyproject.toml) 2024-02-22T05:03:24,949 running dist_info 2024-02-22T05:03:24,969 creating /tmp/pip-modern-metadata-ydsbs4cr/galaxy_app.egg-info 2024-02-22T05:03:24,972 writing /tmp/pip-modern-metadata-ydsbs4cr/galaxy_app.egg-info/PKG-INFO 2024-02-22T05:03:24,978 writing dependency_links to /tmp/pip-modern-metadata-ydsbs4cr/galaxy_app.egg-info/dependency_links.txt 2024-02-22T05:03:24,980 writing entry points to /tmp/pip-modern-metadata-ydsbs4cr/galaxy_app.egg-info/entry_points.txt 2024-02-22T05:03:24,982 writing requirements to /tmp/pip-modern-metadata-ydsbs4cr/galaxy_app.egg-info/requires.txt 2024-02-22T05:03:24,983 writing top-level names to /tmp/pip-modern-metadata-ydsbs4cr/galaxy_app.egg-info/top_level.txt 2024-02-22T05:03:24,985 writing manifest file '/tmp/pip-modern-metadata-ydsbs4cr/galaxy_app.egg-info/SOURCES.txt' 2024-02-22T05:03:25,078 reading manifest file '/tmp/pip-modern-metadata-ydsbs4cr/galaxy_app.egg-info/SOURCES.txt' 2024-02-22T05:03:25,081 reading manifest template 'MANIFEST.in' 2024-02-22T05:03:25,588 adding license file 'LICENSE' 2024-02-22T05:03:25,607 writing manifest file '/tmp/pip-modern-metadata-ydsbs4cr/galaxy_app.egg-info/SOURCES.txt' 2024-02-22T05:03:25,609 creating '/tmp/pip-modern-metadata-ydsbs4cr/galaxy_app-23.2.1.dist-info' 2024-02-22T05:03:25,808 Preparing metadata (pyproject.toml): finished with status 'done' 2024-02-22T05:03:25,816 Source in /tmp/pip-wheel-lyugudaw/galaxy-app_d14afac733f34a2fa8388db3738af954 has version 23.2.1, which satisfies requirement galaxy-app==23.2.1 from https://files.pythonhosted.org/packages/2f/6c/b024d7c86132a8926709338c49bef02ac75821d997e60030744cf4e65ed0/galaxy-app-23.2.1.tar.gz 2024-02-22T05:03:25,817 Removed galaxy-app==23.2.1 from https://files.pythonhosted.org/packages/2f/6c/b024d7c86132a8926709338c49bef02ac75821d997e60030744cf4e65ed0/galaxy-app-23.2.1.tar.gz from build tracker '/tmp/pip-build-tracker-v3pg13tr' 2024-02-22T05:03:25,827 Created temporary directory: /tmp/pip-unpack-jh7xubx6 2024-02-22T05:03:25,828 Created temporary directory: /tmp/pip-unpack-q3giliyf 2024-02-22T05:03:25,878 Building wheels for collected packages: galaxy-app 2024-02-22T05:03:25,882 Created temporary directory: /tmp/pip-wheel-hnzx64b5 2024-02-22T05:03:25,883 Destination directory: /tmp/pip-wheel-hnzx64b5 2024-02-22T05:03:25,885 Building wheel for galaxy-app (pyproject.toml): started 2024-02-22T05:03:25,886 Running command Building wheel for galaxy-app (pyproject.toml) 2024-02-22T05:03:26,500 running bdist_wheel 2024-02-22T05:03:26,541 running build 2024-02-22T05:03:26,545 running build_py 2024-02-22T05:03:26,552 creating build 2024-02-22T05:03:26,552 creating build/lib 2024-02-22T05:03:26,553 creating build/lib/galaxy_ext 2024-02-22T05:03:26,554 copying galaxy_ext/__init__.py -> build/lib/galaxy_ext 2024-02-22T05:03:26,557 creating build/lib/galaxy 2024-02-22T05:03:26,557 copying galaxy/app.py -> build/lib/galaxy 2024-02-22T05:03:26,560 copying galaxy/di.py -> build/lib/galaxy 2024-02-22T05:03:26,562 copying galaxy/structured_app.py -> build/lib/galaxy 2024-02-22T05:03:26,564 copying galaxy/config_watchers.py -> build/lib/galaxy 2024-02-22T05:03:26,566 copying galaxy/main_config.py -> build/lib/galaxy 2024-02-22T05:03:26,568 copying galaxy/main.py -> build/lib/galaxy 2024-02-22T05:03:26,570 copying galaxy/queues.py -> build/lib/galaxy 2024-02-22T05:03:26,572 copying galaxy/__init__.py -> build/lib/galaxy 2024-02-22T05:03:26,573 copying galaxy/queue_worker.py -> build/lib/galaxy 2024-02-22T05:03:26,576 creating build/lib/tool_shed_client 2024-02-22T05:03:26,577 copying tool_shed_client/trs_util.py -> build/lib/tool_shed_client 2024-02-22T05:03:26,578 copying tool_shed_client/__init__.py -> build/lib/tool_shed_client 2024-02-22T05:03:26,580 creating build/lib/galaxy_ext/container_monitor 2024-02-22T05:03:26,581 copying galaxy_ext/container_monitor/monitor.py -> build/lib/galaxy_ext/container_monitor 2024-02-22T05:03:26,583 copying galaxy_ext/container_monitor/__init__.py -> build/lib/galaxy_ext/container_monitor 2024-02-22T05:03:26,584 creating build/lib/galaxy_ext/metadata 2024-02-22T05:03:26,585 copying galaxy_ext/metadata/__init__.py -> build/lib/galaxy_ext/metadata 2024-02-22T05:03:26,587 copying galaxy_ext/metadata/set_metadata.py -> build/lib/galaxy_ext/metadata 2024-02-22T05:03:26,589 creating build/lib/galaxy_ext/expressions 2024-02-22T05:03:26,590 copying galaxy_ext/expressions/handle_job.py -> build/lib/galaxy_ext/expressions 2024-02-22T05:03:26,592 copying galaxy_ext/expressions/__init__.py -> build/lib/galaxy_ext/expressions 2024-02-22T05:03:26,594 creating build/lib/galaxy/tools 2024-02-22T05:03:26,595 copying galaxy/tools/evaluation.py -> build/lib/galaxy/tools 2024-02-22T05:03:26,598 copying galaxy/tools/repositories.py -> build/lib/galaxy/tools 2024-02-22T05:03:26,599 copying galaxy/tools/recommendations.py -> build/lib/galaxy/tools 2024-02-22T05:03:26,602 copying galaxy/tools/special_tools.py -> build/lib/galaxy/tools 2024-02-22T05:03:26,603 copying galaxy/tools/data_fetch.py -> build/lib/galaxy/tools 2024-02-22T05:03:26,606 copying galaxy/tools/execute.py -> build/lib/galaxy/tools 2024-02-22T05:03:26,608 copying galaxy/tools/biotools.py -> build/lib/galaxy/tools 2024-02-22T05:03:26,610 copying galaxy/tools/wrappers.py -> build/lib/galaxy/tools 2024-02-22T05:03:26,613 copying galaxy/tools/cache.py -> build/lib/galaxy/tools 2024-02-22T05:03:26,615 copying galaxy/tools/__init__.py -> build/lib/galaxy/tools 2024-02-22T05:03:26,620 copying galaxy/tools/errors.py -> build/lib/galaxy/tools 2024-02-22T05:03:26,622 copying galaxy/tools/remote_tool_eval.py -> build/lib/galaxy/tools 2024-02-22T05:03:26,624 copying galaxy/tools/exception_handling.py -> build/lib/galaxy/tools 2024-02-22T05:03:26,626 copying galaxy/tools/test.py -> build/lib/galaxy/tools 2024-02-22T05:03:26,628 creating build/lib/galaxy/app_unittest_utils 2024-02-22T05:03:26,629 copying galaxy/app_unittest_utils/toolbox_support.py -> build/lib/galaxy/app_unittest_utils 2024-02-22T05:03:26,632 copying galaxy/app_unittest_utils/__init__.py -> build/lib/galaxy/app_unittest_utils 2024-02-22T05:03:26,633 copying galaxy/app_unittest_utils/galaxy_mock.py -> build/lib/galaxy/app_unittest_utils 2024-02-22T05:03:26,635 copying galaxy/app_unittest_utils/tools_support.py -> build/lib/galaxy/app_unittest_utils 2024-02-22T05:03:26,638 creating build/lib/galaxy/celery 2024-02-22T05:03:26,639 copying galaxy/celery/__init__.py -> build/lib/galaxy/celery 2024-02-22T05:03:26,641 copying galaxy/celery/tasks.py -> build/lib/galaxy/celery 2024-02-22T05:03:26,644 copying galaxy/celery/base_task.py -> build/lib/galaxy/celery 2024-02-22T05:03:26,646 copying galaxy/celery/_serialization.py -> build/lib/galaxy/celery 2024-02-22T05:03:26,648 creating build/lib/galaxy/visualization 2024-02-22T05:03:26,648 copying galaxy/visualization/genomes.py -> build/lib/galaxy/visualization 2024-02-22T05:03:26,651 copying galaxy/visualization/__init__.py -> build/lib/galaxy/visualization 2024-02-22T05:03:26,653 creating build/lib/galaxy/jobs 2024-02-22T05:03:26,654 copying galaxy/jobs/rule_helper.py -> build/lib/galaxy/jobs 2024-02-22T05:03:26,656 copying galaxy/jobs/handler.py -> build/lib/galaxy/jobs 2024-02-22T05:03:26,659 copying galaxy/jobs/__init__.py -> build/lib/galaxy/jobs 2024-02-22T05:03:26,663 copying galaxy/jobs/dynamic_tool_destination.py -> build/lib/galaxy/jobs 2024-02-22T05:03:26,666 copying galaxy/jobs/command_factory.py -> build/lib/galaxy/jobs 2024-02-22T05:03:26,669 copying galaxy/jobs/mapper.py -> build/lib/galaxy/jobs 2024-02-22T05:03:26,671 copying galaxy/jobs/stock_rules.py -> build/lib/galaxy/jobs 2024-02-22T05:03:26,673 copying galaxy/jobs/manager.py -> build/lib/galaxy/jobs 2024-02-22T05:03:26,675 creating build/lib/galaxy/workflow 2024-02-22T05:03:26,676 copying galaxy/workflow/trs_proxy.py -> build/lib/galaxy/workflow 2024-02-22T05:03:26,678 copying galaxy/workflow/scheduling_manager.py -> build/lib/galaxy/workflow 2024-02-22T05:03:26,681 copying galaxy/workflow/run_request.py -> build/lib/galaxy/workflow 2024-02-22T05:03:26,684 copying galaxy/workflow/steps.py -> build/lib/galaxy/workflow 2024-02-22T05:03:26,686 copying galaxy/workflow/extract.py -> build/lib/galaxy/workflow 2024-02-22T05:03:26,688 copying galaxy/workflow/__init__.py -> build/lib/galaxy/workflow 2024-02-22T05:03:26,689 copying galaxy/workflow/run.py -> build/lib/galaxy/workflow 2024-02-22T05:03:26,692 copying galaxy/workflow/modules.py -> build/lib/galaxy/workflow 2024-02-22T05:03:26,696 copying galaxy/workflow/render.py -> build/lib/galaxy/workflow 2024-02-22T05:03:26,699 creating build/lib/galaxy/carbon_emissions 2024-02-22T05:03:26,699 copying galaxy/carbon_emissions/__init__.py -> build/lib/galaxy/carbon_emissions 2024-02-22T05:03:26,702 creating build/lib/galaxy/webhooks 2024-02-22T05:03:26,702 copying galaxy/webhooks/__init__.py -> build/lib/galaxy/webhooks 2024-02-22T05:03:26,705 creating build/lib/galaxy/work 2024-02-22T05:03:26,706 copying galaxy/work/__init__.py -> build/lib/galaxy/work 2024-02-22T05:03:26,707 copying galaxy/work/context.py -> build/lib/galaxy/work 2024-02-22T05:03:26,711 creating build/lib/galaxy/managers 2024-02-22T05:03:26,712 copying galaxy/managers/licenses.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,714 copying galaxy/managers/item_tags.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,716 copying galaxy/managers/cloudauthzs.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,719 copying galaxy/managers/histories.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,721 copying galaxy/managers/tools.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,724 copying galaxy/managers/quotas.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,726 copying galaxy/managers/group_roles.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,728 copying galaxy/managers/users.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,730 copying galaxy/managers/groups.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,733 copying galaxy/managers/libraries.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,735 copying galaxy/managers/visualizations.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,737 copying galaxy/managers/group_users.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,739 copying galaxy/managers/notification.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,742 copying galaxy/managers/ratable.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,744 copying galaxy/managers/jobs.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,747 copying galaxy/managers/collections_util.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,749 copying galaxy/managers/display_applications.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,751 copying galaxy/managers/workflows.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,754 copying galaxy/managers/dbkeys.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,756 copying galaxy/managers/pages.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,759 copying galaxy/managers/markdown_parse.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,761 copying galaxy/managers/markdown_util.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,764 copying galaxy/managers/citations.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,766 copying galaxy/managers/deletable.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,768 copying galaxy/managers/taggable.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,769 copying galaxy/managers/tags.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,771 copying galaxy/managers/history_contents.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,773 copying galaxy/managers/metrics.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,775 copying galaxy/managers/library_datasets.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,778 copying galaxy/managers/sharable.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,780 copying galaxy/managers/genomes.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,782 copying galaxy/managers/api_keys.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,784 copying galaxy/managers/lddas.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,786 copying galaxy/managers/session.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,787 copying galaxy/managers/export_tracker.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,789 copying galaxy/managers/tool_data.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,791 copying galaxy/managers/__init__.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,793 copying galaxy/managers/folders.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,795 copying galaxy/managers/datatypes.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,798 copying galaxy/managers/rbac_secured.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,800 copying galaxy/managers/remote_files.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,802 copying galaxy/managers/hdas.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,804 copying galaxy/managers/tasks.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,806 copying galaxy/managers/executables.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,808 copying galaxy/managers/forms.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,810 copying galaxy/managers/collections.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,812 copying galaxy/managers/job_connections.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,814 copying galaxy/managers/datasets.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,817 copying galaxy/managers/context.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,819 copying galaxy/managers/interactivetool.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,822 copying galaxy/managers/configuration.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,824 copying galaxy/managers/model_stores.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,826 copying galaxy/managers/secured.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,828 copying galaxy/managers/annotatable.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,831 copying galaxy/managers/roles.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,833 copying galaxy/managers/base.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,835 copying galaxy/managers/cloud.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,838 copying galaxy/managers/hdcas.py -> build/lib/galaxy/managers 2024-02-22T05:03:26,841 creating build/lib/galaxy/authnz 2024-02-22T05:03:26,842 copying galaxy/authnz/custos_authnz.py -> build/lib/galaxy/authnz 2024-02-22T05:03:26,845 copying galaxy/authnz/__init__.py -> build/lib/galaxy/authnz 2024-02-22T05:03:26,847 copying galaxy/authnz/managers.py -> build/lib/galaxy/authnz 2024-02-22T05:03:26,849 copying galaxy/authnz/psa_authnz.py -> build/lib/galaxy/authnz 2024-02-22T05:03:26,852 copying galaxy/authnz/util.py -> build/lib/galaxy/authnz 2024-02-22T05:03:26,854 creating build/lib/galaxy/forms 2024-02-22T05:03:26,854 copying galaxy/forms/__init__.py -> build/lib/galaxy/forms 2024-02-22T05:03:26,856 copying galaxy/forms/forms.py -> build/lib/galaxy/forms 2024-02-22T05:03:26,858 creating build/lib/galaxy/tool_shed 2024-02-22T05:03:26,859 copying galaxy/tool_shed/repository_type.py -> build/lib/galaxy/tool_shed 2024-02-22T05:03:26,861 copying galaxy/tool_shed/cache.py -> build/lib/galaxy/tool_shed 2024-02-22T05:03:26,863 copying galaxy/tool_shed/__init__.py -> build/lib/galaxy/tool_shed 2024-02-22T05:03:26,864 creating build/lib/galaxy/actions 2024-02-22T05:03:26,865 copying galaxy/actions/__init__.py -> build/lib/galaxy/actions 2024-02-22T05:03:26,866 copying galaxy/actions/library.py -> build/lib/galaxy/actions 2024-02-22T05:03:26,869 creating build/lib/galaxy/dependencies 2024-02-22T05:03:26,870 copying galaxy/dependencies/__init__.py -> build/lib/galaxy/dependencies 2024-02-22T05:03:26,873 creating build/lib/galaxy/tools/filters 2024-02-22T05:03:26,874 copying galaxy/tools/filters/__init__.py -> build/lib/galaxy/tools/filters 2024-02-22T05:03:26,876 creating build/lib/galaxy/tools/imp_exp 2024-02-22T05:03:26,877 copying galaxy/tools/imp_exp/unpack_tar_gz_archive.py -> build/lib/galaxy/tools/imp_exp 2024-02-22T05:03:26,879 copying galaxy/tools/imp_exp/__init__.py -> build/lib/galaxy/tools/imp_exp 2024-02-22T05:03:26,881 copying galaxy/tools/imp_exp/export_history.py -> build/lib/galaxy/tools/imp_exp 2024-02-22T05:03:26,883 creating build/lib/galaxy/tools/search 2024-02-22T05:03:26,884 copying galaxy/tools/search/__init__.py -> build/lib/galaxy/tools/search 2024-02-22T05:03:26,887 creating build/lib/galaxy/tools/error_reports 2024-02-22T05:03:26,887 copying galaxy/tools/error_reports/__init__.py -> build/lib/galaxy/tools/error_reports 2024-02-22T05:03:26,890 creating build/lib/galaxy/tools/expressions 2024-02-22T05:03:26,891 copying galaxy/tools/expressions/evaluation.py -> build/lib/galaxy/tools/expressions 2024-02-22T05:03:26,892 copying galaxy/tools/expressions/__init__.py -> build/lib/galaxy/tools/expressions 2024-02-22T05:03:26,894 copying galaxy/tools/expressions/script.py -> build/lib/galaxy/tools/expressions 2024-02-22T05:03:26,896 copying galaxy/tools/expressions/util.py -> build/lib/galaxy/tools/expressions 2024-02-22T05:03:26,898 creating build/lib/galaxy/tools/actions 2024-02-22T05:03:26,899 copying galaxy/tools/actions/upload.py -> build/lib/galaxy/tools/actions 2024-02-22T05:03:26,902 copying galaxy/tools/actions/data_manager.py -> build/lib/galaxy/tools/actions 2024-02-22T05:03:26,903 copying galaxy/tools/actions/upload_common.py -> build/lib/galaxy/tools/actions 2024-02-22T05:03:26,906 copying galaxy/tools/actions/data_source.py -> build/lib/galaxy/tools/actions 2024-02-22T05:03:26,907 copying galaxy/tools/actions/__init__.py -> build/lib/galaxy/tools/actions 2024-02-22T05:03:26,911 copying galaxy/tools/actions/model_operations.py -> build/lib/galaxy/tools/actions 2024-02-22T05:03:26,913 copying galaxy/tools/actions/history_imp_exp.py -> build/lib/galaxy/tools/actions 2024-02-22T05:03:26,915 copying galaxy/tools/actions/metadata.py -> build/lib/galaxy/tools/actions 2024-02-22T05:03:26,917 creating build/lib/galaxy/tools/data_manager 2024-02-22T05:03:26,918 copying galaxy/tools/data_manager/__init__.py -> build/lib/galaxy/tools/data_manager 2024-02-22T05:03:26,920 copying galaxy/tools/data_manager/manager.py -> build/lib/galaxy/tools/data_manager 2024-02-22T05:03:26,923 creating build/lib/galaxy/tools/parameters 2024-02-22T05:03:26,924 copying galaxy/tools/parameters/basic.py -> build/lib/galaxy/tools/parameters 2024-02-22T05:03:26,928 copying galaxy/tools/parameters/wrapped_json.py -> build/lib/galaxy/tools/parameters 2024-02-22T05:03:26,930 copying galaxy/tools/parameters/validation.py -> build/lib/galaxy/tools/parameters 2024-02-22T05:03:26,933 copying galaxy/tools/parameters/grouping.py -> build/lib/galaxy/tools/parameters 2024-02-22T05:03:26,935 copying galaxy/tools/parameters/sanitize.py -> build/lib/galaxy/tools/parameters 2024-02-22T05:03:26,937 copying galaxy/tools/parameters/history_query.py -> build/lib/galaxy/tools/parameters 2024-02-22T05:03:26,939 copying galaxy/tools/parameters/meta.py -> build/lib/galaxy/tools/parameters 2024-02-22T05:03:26,941 copying galaxy/tools/parameters/__init__.py -> build/lib/galaxy/tools/parameters 2024-02-22T05:03:26,943 copying galaxy/tools/parameters/input_translation.py -> build/lib/galaxy/tools/parameters 2024-02-22T05:03:26,945 copying galaxy/tools/parameters/dynamic_options.py -> build/lib/galaxy/tools/parameters 2024-02-22T05:03:26,947 copying galaxy/tools/parameters/dataset_matcher.py -> build/lib/galaxy/tools/parameters 2024-02-22T05:03:26,950 copying galaxy/tools/parameters/wrapped.py -> build/lib/galaxy/tools/parameters 2024-02-22T05:03:26,952 creating build/lib/galaxy/tools/util 2024-02-22T05:03:26,953 copying galaxy/tools/util/__init__.py -> build/lib/galaxy/tools/util 2024-02-22T05:03:26,955 copying galaxy/tools/util/maf_utilities.py -> build/lib/galaxy/tools/util 2024-02-22T05:03:26,958 creating build/lib/galaxy/tools/data 2024-02-22T05:03:26,959 copying galaxy/tools/data/__init__.py -> build/lib/galaxy/tools/data 2024-02-22T05:03:26,961 creating build/lib/galaxy/tools/error_reports/plugins 2024-02-22T05:03:26,962 copying galaxy/tools/error_reports/plugins/email.py -> build/lib/galaxy/tools/error_reports/plugins 2024-02-22T05:03:26,964 copying galaxy/tools/error_reports/plugins/influxdb.py -> build/lib/galaxy/tools/error_reports/plugins 2024-02-22T05:03:26,966 copying galaxy/tools/error_reports/plugins/slack.py -> build/lib/galaxy/tools/error_reports/plugins 2024-02-22T05:03:26,968 copying galaxy/tools/error_reports/plugins/sentry.py -> build/lib/galaxy/tools/error_reports/plugins 2024-02-22T05:03:26,969 copying galaxy/tools/error_reports/plugins/github.py -> build/lib/galaxy/tools/error_reports/plugins 2024-02-22T05:03:26,971 copying galaxy/tools/error_reports/plugins/gitlab.py -> build/lib/galaxy/tools/error_reports/plugins 2024-02-22T05:03:26,974 copying galaxy/tools/error_reports/plugins/__init__.py -> build/lib/galaxy/tools/error_reports/plugins 2024-02-22T05:03:26,975 copying galaxy/tools/error_reports/plugins/json.py -> build/lib/galaxy/tools/error_reports/plugins 2024-02-22T05:03:26,977 copying galaxy/tools/error_reports/plugins/base_git.py -> build/lib/galaxy/tools/error_reports/plugins 2024-02-22T05:03:26,979 creating build/lib/galaxy/tools/util/galaxyops 2024-02-22T05:03:26,980 copying galaxy/tools/util/galaxyops/__init__.py -> build/lib/galaxy/tools/util/galaxyops 2024-02-22T05:03:26,983 creating build/lib/galaxy/visualization/genome 2024-02-22T05:03:26,983 copying galaxy/visualization/genome/__init__.py -> build/lib/galaxy/visualization/genome 2024-02-22T05:03:26,986 creating build/lib/galaxy/visualization/plugins 2024-02-22T05:03:26,987 copying galaxy/visualization/plugins/plugin.py -> build/lib/galaxy/visualization/plugins 2024-02-22T05:03:26,989 copying galaxy/visualization/plugins/config_parser.py -> build/lib/galaxy/visualization/plugins 2024-02-22T05:03:26,992 copying galaxy/visualization/plugins/__init__.py -> build/lib/galaxy/visualization/plugins 2024-02-22T05:03:26,993 copying galaxy/visualization/plugins/registry.py -> build/lib/galaxy/visualization/plugins 2024-02-22T05:03:26,996 copying galaxy/visualization/plugins/utils.py -> build/lib/galaxy/visualization/plugins 2024-02-22T05:03:26,997 copying galaxy/visualization/plugins/resource_parser.py -> build/lib/galaxy/visualization/plugins 2024-02-22T05:03:27,000 creating build/lib/galaxy/visualization/data_providers 2024-02-22T05:03:27,001 copying galaxy/visualization/data_providers/basic.py -> build/lib/galaxy/visualization/data_providers 2024-02-22T05:03:27,003 copying galaxy/visualization/data_providers/__init__.py -> build/lib/galaxy/visualization/data_providers 2024-02-22T05:03:27,005 copying galaxy/visualization/data_providers/registry.py -> build/lib/galaxy/visualization/data_providers 2024-02-22T05:03:27,007 copying galaxy/visualization/data_providers/cigar.py -> build/lib/galaxy/visualization/data_providers 2024-02-22T05:03:27,009 copying galaxy/visualization/data_providers/genome.py -> build/lib/galaxy/visualization/data_providers 2024-02-22T05:03:27,012 creating build/lib/galaxy/visualization/tracks 2024-02-22T05:03:27,013 copying galaxy/visualization/tracks/__init__.py -> build/lib/galaxy/visualization/tracks 2024-02-22T05:03:27,015 creating build/lib/galaxy/visualization/data_providers/phyloviz 2024-02-22T05:03:27,016 copying galaxy/visualization/data_providers/phyloviz/phyloxmlparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2024-02-22T05:03:27,019 copying galaxy/visualization/data_providers/phyloviz/__init__.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2024-02-22T05:03:27,021 copying galaxy/visualization/data_providers/phyloviz/baseparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2024-02-22T05:03:27,023 copying galaxy/visualization/data_providers/phyloviz/nexusparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2024-02-22T05:03:27,025 copying galaxy/visualization/data_providers/phyloviz/newickparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2024-02-22T05:03:27,029 creating build/lib/galaxy/jobs/runners 2024-02-22T05:03:27,030 copying galaxy/jobs/runners/chronos.py -> build/lib/galaxy/jobs/runners 2024-02-22T05:03:27,033 copying galaxy/jobs/runners/local.py -> build/lib/galaxy/jobs/runners 2024-02-22T05:03:27,036 copying galaxy/jobs/runners/univa.py -> build/lib/galaxy/jobs/runners 2024-02-22T05:03:27,040 copying galaxy/jobs/runners/state_handler_factory.py -> build/lib/galaxy/jobs/runners 2024-02-22T05:03:27,042 copying galaxy/jobs/runners/godocker.py -> build/lib/galaxy/jobs/runners 2024-02-22T05:03:27,044 copying galaxy/jobs/runners/condor.py -> build/lib/galaxy/jobs/runners 2024-02-22T05:03:27,047 copying galaxy/jobs/runners/slurm.py -> build/lib/galaxy/jobs/runners 2024-02-22T05:03:27,050 copying galaxy/jobs/runners/drmaa.py -> build/lib/galaxy/jobs/runners 2024-02-22T05:03:27,053 copying galaxy/jobs/runners/aws.py -> build/lib/galaxy/jobs/runners 2024-02-22T05:03:27,056 copying galaxy/jobs/runners/__init__.py -> build/lib/galaxy/jobs/runners 2024-02-22T05:03:27,059 copying galaxy/jobs/runners/tasks.py -> build/lib/galaxy/jobs/runners 2024-02-22T05:03:27,062 copying galaxy/jobs/runners/pulsar.py -> build/lib/galaxy/jobs/runners 2024-02-22T05:03:27,066 copying galaxy/jobs/runners/pbs.py -> build/lib/galaxy/jobs/runners 2024-02-22T05:03:27,070 copying galaxy/jobs/runners/kubernetes.py -> build/lib/galaxy/jobs/runners 2024-02-22T05:03:27,074 copying galaxy/jobs/runners/cli.py -> build/lib/galaxy/jobs/runners 2024-02-22T05:03:27,097 creating build/lib/galaxy/jobs/rules 2024-02-22T05:03:27,106 copying galaxy/jobs/rules/__init__.py -> build/lib/galaxy/jobs/rules 2024-02-22T05:03:27,109 creating build/lib/galaxy/jobs/splitters 2024-02-22T05:03:27,110 copying galaxy/jobs/splitters/basic.py -> build/lib/galaxy/jobs/splitters 2024-02-22T05:03:27,113 copying galaxy/jobs/splitters/__init__.py -> build/lib/galaxy/jobs/splitters 2024-02-22T05:03:27,126 copying galaxy/jobs/splitters/multi.py -> build/lib/galaxy/jobs/splitters 2024-02-22T05:03:27,130 creating build/lib/galaxy/jobs/runners/state_handlers 2024-02-22T05:03:27,132 copying galaxy/jobs/runners/state_handlers/_safe_eval.py -> build/lib/galaxy/jobs/runners/state_handlers 2024-02-22T05:03:27,135 copying galaxy/jobs/runners/state_handlers/resubmit.py -> build/lib/galaxy/jobs/runners/state_handlers 2024-02-22T05:03:27,138 copying galaxy/jobs/runners/state_handlers/__init__.py -> build/lib/galaxy/jobs/runners/state_handlers 2024-02-22T05:03:27,141 creating build/lib/galaxy/jobs/runners/util 2024-02-22T05:03:27,142 copying galaxy/jobs/runners/util/sudo.py -> build/lib/galaxy/jobs/runners/util 2024-02-22T05:03:27,145 copying galaxy/jobs/runners/util/external.py -> build/lib/galaxy/jobs/runners/util 2024-02-22T05:03:27,148 copying galaxy/jobs/runners/util/__init__.py -> build/lib/galaxy/jobs/runners/util 2024-02-22T05:03:27,151 copying galaxy/jobs/runners/util/pykube_util.py -> build/lib/galaxy/jobs/runners/util 2024-02-22T05:03:27,155 copying galaxy/jobs/runners/util/fork_safe_write.py -> build/lib/galaxy/jobs/runners/util 2024-02-22T05:03:27,162 copying galaxy/jobs/runners/util/kill.py -> build/lib/galaxy/jobs/runners/util 2024-02-22T05:03:27,164 copying galaxy/jobs/runners/util/env.py -> build/lib/galaxy/jobs/runners/util 2024-02-22T05:03:27,167 copying galaxy/jobs/runners/util/process_groups.py -> build/lib/galaxy/jobs/runners/util 2024-02-22T05:03:27,169 creating build/lib/galaxy/jobs/runners/util/job_script 2024-02-22T05:03:27,171 copying galaxy/jobs/runners/util/job_script/__init__.py -> build/lib/galaxy/jobs/runners/util/job_script 2024-02-22T05:03:27,175 creating build/lib/galaxy/jobs/runners/util/cli 2024-02-22T05:03:27,176 copying galaxy/jobs/runners/util/cli/__init__.py -> build/lib/galaxy/jobs/runners/util/cli 2024-02-22T05:03:27,179 copying galaxy/jobs/runners/util/cli/factory.py -> build/lib/galaxy/jobs/runners/util/cli 2024-02-22T05:03:27,183 creating build/lib/galaxy/jobs/runners/util/condor 2024-02-22T05:03:27,184 copying galaxy/jobs/runners/util/condor/__init__.py -> build/lib/galaxy/jobs/runners/util/condor 2024-02-22T05:03:27,188 creating build/lib/galaxy/jobs/runners/util/cli/shell 2024-02-22T05:03:27,189 copying galaxy/jobs/runners/util/cli/shell/local.py -> build/lib/galaxy/jobs/runners/util/cli/shell 2024-02-22T05:03:27,199 copying galaxy/jobs/runners/util/cli/shell/__init__.py -> build/lib/galaxy/jobs/runners/util/cli/shell 2024-02-22T05:03:27,204 copying galaxy/jobs/runners/util/cli/shell/rsh.py -> build/lib/galaxy/jobs/runners/util/cli/shell 2024-02-22T05:03:27,208 creating build/lib/galaxy/jobs/runners/util/cli/job 2024-02-22T05:03:27,210 copying galaxy/jobs/runners/util/cli/job/slurm_torque.py -> build/lib/galaxy/jobs/runners/util/cli/job 2024-02-22T05:03:27,212 copying galaxy/jobs/runners/util/cli/job/slurm.py -> build/lib/galaxy/jobs/runners/util/cli/job 2024-02-22T05:03:27,215 copying galaxy/jobs/runners/util/cli/job/__init__.py -> build/lib/galaxy/jobs/runners/util/cli/job 2024-02-22T05:03:27,218 copying galaxy/jobs/runners/util/cli/job/lsf.py -> build/lib/galaxy/jobs/runners/util/cli/job 2024-02-22T05:03:27,221 copying galaxy/jobs/runners/util/cli/job/pbs.py -> build/lib/galaxy/jobs/runners/util/cli/job 2024-02-22T05:03:27,224 copying galaxy/jobs/runners/util/cli/job/torque.py -> build/lib/galaxy/jobs/runners/util/cli/job 2024-02-22T05:03:27,228 creating build/lib/galaxy/workflow/reports 2024-02-22T05:03:27,229 copying galaxy/workflow/reports/__init__.py -> build/lib/galaxy/workflow/reports 2024-02-22T05:03:27,232 creating build/lib/galaxy/workflow/schedulers 2024-02-22T05:03:27,234 copying galaxy/workflow/schedulers/__init__.py -> build/lib/galaxy/workflow/schedulers 2024-02-22T05:03:27,236 copying galaxy/workflow/schedulers/core.py -> build/lib/galaxy/workflow/schedulers 2024-02-22T05:03:27,240 creating build/lib/galaxy/workflow/resources 2024-02-22T05:03:27,241 copying galaxy/workflow/resources/__init__.py -> build/lib/galaxy/workflow/resources 2024-02-22T05:03:27,246 creating build/lib/galaxy/workflow/refactor 2024-02-22T05:03:27,247 copying galaxy/workflow/refactor/schema.py -> build/lib/galaxy/workflow/refactor 2024-02-22T05:03:27,251 copying galaxy/workflow/refactor/execute.py -> build/lib/galaxy/workflow/refactor 2024-02-22T05:03:27,259 copying galaxy/workflow/refactor/__init__.py -> build/lib/galaxy/workflow/refactor 2024-02-22T05:03:27,262 creating build/lib/galaxy/workflow/reports/generators 2024-02-22T05:03:27,263 copying galaxy/workflow/reports/generators/markdown.py -> build/lib/galaxy/workflow/reports/generators 2024-02-22T05:03:27,267 copying galaxy/workflow/reports/generators/__init__.py -> build/lib/galaxy/workflow/reports/generators 2024-02-22T05:03:27,270 creating build/lib/galaxy/tool_shed/tools 2024-02-22T05:03:27,272 copying galaxy/tool_shed/tools/data_table_manager.py -> build/lib/galaxy/tool_shed/tools 2024-02-22T05:03:27,278 copying galaxy/tool_shed/tools/tool_validator.py -> build/lib/galaxy/tool_shed/tools 2024-02-22T05:03:27,286 copying galaxy/tool_shed/tools/__init__.py -> build/lib/galaxy/tool_shed/tools 2024-02-22T05:03:27,289 creating build/lib/galaxy/tool_shed/unittest_utils 2024-02-22T05:03:27,291 copying galaxy/tool_shed/unittest_utils/__init__.py -> build/lib/galaxy/tool_shed/unittest_utils 2024-02-22T05:03:27,299 creating build/lib/galaxy/tool_shed/metadata 2024-02-22T05:03:27,300 copying galaxy/tool_shed/metadata/__init__.py -> build/lib/galaxy/tool_shed/metadata 2024-02-22T05:03:27,304 copying galaxy/tool_shed/metadata/metadata_generator.py -> build/lib/galaxy/tool_shed/metadata 2024-02-22T05:03:27,314 creating build/lib/galaxy/tool_shed/galaxy_install 2024-02-22T05:03:27,316 copying galaxy/tool_shed/galaxy_install/installed_repository_manager.py -> build/lib/galaxy/tool_shed/galaxy_install 2024-02-22T05:03:30,801 copying galaxy/tool_shed/galaxy_install/client.py -> build/lib/galaxy/tool_shed/galaxy_install 2024-02-22T05:03:30,804 copying galaxy/tool_shed/galaxy_install/update_repository_manager.py -> build/lib/galaxy/tool_shed/galaxy_install 2024-02-22T05:03:30,808 copying galaxy/tool_shed/galaxy_install/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install 2024-02-22T05:03:30,811 copying galaxy/tool_shed/galaxy_install/install_manager.py -> build/lib/galaxy/tool_shed/galaxy_install 2024-02-22T05:03:30,818 creating build/lib/galaxy/tool_shed/util 2024-02-22T05:03:30,819 copying galaxy/tool_shed/util/tool_util.py -> build/lib/galaxy/tool_shed/util 2024-02-22T05:03:30,823 copying galaxy/tool_shed/util/metadata_util.py -> build/lib/galaxy/tool_shed/util 2024-02-22T05:03:30,827 copying galaxy/tool_shed/util/repository_util.py -> build/lib/galaxy/tool_shed/util 2024-02-22T05:03:30,831 copying galaxy/tool_shed/util/shed_util_common.py -> build/lib/galaxy/tool_shed/util 2024-02-22T05:03:30,836 copying galaxy/tool_shed/util/utility_container_manager.py -> build/lib/galaxy/tool_shed/util 2024-02-22T05:03:30,842 copying galaxy/tool_shed/util/container_util.py -> build/lib/galaxy/tool_shed/util 2024-02-22T05:03:30,845 copying galaxy/tool_shed/util/dependency_display.py -> build/lib/galaxy/tool_shed/util 2024-02-22T05:03:30,850 copying galaxy/tool_shed/util/__init__.py -> build/lib/galaxy/tool_shed/util 2024-02-22T05:03:30,853 copying galaxy/tool_shed/util/tool_dependency_util.py -> build/lib/galaxy/tool_shed/util 2024-02-22T05:03:30,857 copying galaxy/tool_shed/util/basic_util.py -> build/lib/galaxy/tool_shed/util 2024-02-22T05:03:30,860 copying galaxy/tool_shed/util/hg_util.py -> build/lib/galaxy/tool_shed/util 2024-02-22T05:03:30,864 creating build/lib/galaxy/tool_shed/galaxy_install/tools 2024-02-22T05:03:30,865 copying galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/tools 2024-02-22T05:03:30,870 copying galaxy/tool_shed/galaxy_install/tools/data_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/tools 2024-02-22T05:03:30,874 copying galaxy/tool_shed/galaxy_install/tools/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/tools 2024-02-22T05:03:30,877 creating build/lib/galaxy/tool_shed/galaxy_install/metadata 2024-02-22T05:03:30,878 copying galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/metadata 2024-02-22T05:03:30,882 copying galaxy/tool_shed/galaxy_install/metadata/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/metadata 2024-02-22T05:03:30,885 creating build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies 2024-02-22T05:03:30,886 copying galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies 2024-02-22T05:03:30,891 copying galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies 2024-02-22T05:03:30,894 creating build/lib/tool_shed_client/schema 2024-02-22T05:03:30,895 copying tool_shed_client/schema/__init__.py -> build/lib/tool_shed_client/schema 2024-02-22T05:03:30,898 copying tool_shed_client/schema/trs.py -> build/lib/tool_shed_client/schema 2024-02-22T05:03:30,902 copying tool_shed_client/schema/trs_service_info.py -> build/lib/tool_shed_client/schema 2024-02-22T05:03:30,905 running egg_info 2024-02-22T05:03:30,912 writing galaxy_app.egg-info/PKG-INFO 2024-02-22T05:03:30,921 writing dependency_links to galaxy_app.egg-info/dependency_links.txt 2024-02-22T05:03:30,922 writing entry points to galaxy_app.egg-info/entry_points.txt 2024-02-22T05:03:30,924 writing requirements to galaxy_app.egg-info/requires.txt 2024-02-22T05:03:30,925 writing top-level names to galaxy_app.egg-info/top_level.txt 2024-02-22T05:03:30,981 reading manifest file 'galaxy_app.egg-info/SOURCES.txt' 2024-02-22T05:03:30,995 reading manifest template 'MANIFEST.in' 2024-02-22T05:03:31,517 adding license file 'LICENSE' 2024-02-22T05:03:31,544 writing manifest file 'galaxy_app.egg-info/SOURCES.txt' 2024-02-22T05:03:31,549 /tmp/pip-build-env-nkk3hlxu/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled' is absent from the `packages` configuration. 2024-02-22T05:03:31,550 !! 2024-02-22T05:03:31,551 ******************************************************************************** 2024-02-22T05:03:31,551 ############################ 2024-02-22T05:03:31,552 # Package would be ignored # 2024-02-22T05:03:31,552 ############################ 2024-02-22T05:03:31,553 Python recognizes 'galaxy.tools.bundled' as an importable package[^1], 2024-02-22T05:03:31,553 but it is absent from setuptools' `packages` configuration. 2024-02-22T05:03:31,554 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-22T05:03:31,555 package, please make sure that 'galaxy.tools.bundled' is explicitly added 2024-02-22T05:03:31,556 to the `packages` configuration field. 2024-02-22T05:03:31,557 Alternatively, you can also rely on setuptools' discovery methods 2024-02-22T05:03:31,557 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-22T05:03:31,558 instead of `find_packages(...)`/`find:`). 2024-02-22T05:03:31,559 You can read more about "package discovery" on setuptools documentation page: 2024-02-22T05:03:31,560 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-22T05:03:31,561 If you don't want 'galaxy.tools.bundled' to be distributed and are 2024-02-22T05:03:31,562 already explicitly excluding 'galaxy.tools.bundled' via 2024-02-22T05:03:31,562 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-22T05:03:31,563 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-22T05:03:31,563 combination with a more fine grained `package-data` configuration. 2024-02-22T05:03:31,565 You can read more about "package data files" on setuptools documentation page: 2024-02-22T05:03:31,566 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-22T05:03:31,568 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-22T05:03:31,568 even if it does not contain any `.py` files. 2024-02-22T05:03:31,569 On the other hand, currently there is no concept of package data 2024-02-22T05:03:31,570 directory, all directories are treated like packages. 2024-02-22T05:03:31,570 ******************************************************************************** 2024-02-22T05:03:31,571 !! 2024-02-22T05:03:31,572 check.warn(importable) 2024-02-22T05:03:31,572 /tmp/pip-build-env-nkk3hlxu/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.data_export' is absent from the `packages` configuration. 2024-02-22T05:03:31,572 !! 2024-02-22T05:03:31,573 ******************************************************************************** 2024-02-22T05:03:31,574 ############################ 2024-02-22T05:03:31,574 # Package would be ignored # 2024-02-22T05:03:31,575 ############################ 2024-02-22T05:03:31,575 Python recognizes 'galaxy.tools.bundled.data_export' as an importable package[^1], 2024-02-22T05:03:31,575 but it is absent from setuptools' `packages` configuration. 2024-02-22T05:03:31,576 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-22T05:03:31,577 package, please make sure that 'galaxy.tools.bundled.data_export' is explicitly added 2024-02-22T05:03:31,577 to the `packages` configuration field. 2024-02-22T05:03:31,578 Alternatively, you can also rely on setuptools' discovery methods 2024-02-22T05:03:31,579 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-22T05:03:31,579 instead of `find_packages(...)`/`find:`). 2024-02-22T05:03:31,580 You can read more about "package discovery" on setuptools documentation page: 2024-02-22T05:03:31,581 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-22T05:03:31,583 If you don't want 'galaxy.tools.bundled.data_export' to be distributed and are 2024-02-22T05:03:31,583 already explicitly excluding 'galaxy.tools.bundled.data_export' via 2024-02-22T05:03:31,584 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-22T05:03:31,584 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-22T05:03:31,585 combination with a more fine grained `package-data` configuration. 2024-02-22T05:03:31,586 You can read more about "package data files" on setuptools documentation page: 2024-02-22T05:03:31,587 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-22T05:03:31,588 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-22T05:03:31,589 even if it does not contain any `.py` files. 2024-02-22T05:03:31,589 On the other hand, currently there is no concept of package data 2024-02-22T05:03:31,590 directory, all directories are treated like packages. 2024-02-22T05:03:31,590 ******************************************************************************** 2024-02-22T05:03:31,591 !! 2024-02-22T05:03:31,592 check.warn(importable) 2024-02-22T05:03:31,592 /tmp/pip-build-env-nkk3hlxu/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.data_source' is absent from the `packages` configuration. 2024-02-22T05:03:31,593 !! 2024-02-22T05:03:31,594 ******************************************************************************** 2024-02-22T05:03:31,594 ############################ 2024-02-22T05:03:31,595 # Package would be ignored # 2024-02-22T05:03:31,596 ############################ 2024-02-22T05:03:31,596 Python recognizes 'galaxy.tools.bundled.data_source' as an importable package[^1], 2024-02-22T05:03:31,597 but it is absent from setuptools' `packages` configuration. 2024-02-22T05:03:31,598 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-22T05:03:31,598 package, please make sure that 'galaxy.tools.bundled.data_source' is explicitly added 2024-02-22T05:03:31,599 to the `packages` configuration field. 2024-02-22T05:03:31,599 Alternatively, you can also rely on setuptools' discovery methods 2024-02-22T05:03:31,600 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-22T05:03:31,600 instead of `find_packages(...)`/`find:`). 2024-02-22T05:03:31,601 You can read more about "package discovery" on setuptools documentation page: 2024-02-22T05:03:31,602 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-22T05:03:31,602 If you don't want 'galaxy.tools.bundled.data_source' to be distributed and are 2024-02-22T05:03:31,603 already explicitly excluding 'galaxy.tools.bundled.data_source' via 2024-02-22T05:03:31,603 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-22T05:03:31,604 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-22T05:03:31,604 combination with a more fine grained `package-data` configuration. 2024-02-22T05:03:31,605 You can read more about "package data files" on setuptools documentation page: 2024-02-22T05:03:31,606 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-22T05:03:31,607 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-22T05:03:31,608 even if it does not contain any `.py` files. 2024-02-22T05:03:31,608 On the other hand, currently there is no concept of package data 2024-02-22T05:03:31,609 directory, all directories are treated like packages. 2024-02-22T05:03:31,609 ******************************************************************************** 2024-02-22T05:03:31,610 !! 2024-02-22T05:03:31,611 check.warn(importable) 2024-02-22T05:03:31,612 /tmp/pip-build-env-nkk3hlxu/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.expression_tools' is absent from the `packages` configuration. 2024-02-22T05:03:31,612 !! 2024-02-22T05:03:31,613 ******************************************************************************** 2024-02-22T05:03:31,614 ############################ 2024-02-22T05:03:31,614 # Package would be ignored # 2024-02-22T05:03:31,615 ############################ 2024-02-22T05:03:31,615 Python recognizes 'galaxy.tools.bundled.expression_tools' as an importable package[^1], 2024-02-22T05:03:31,616 but it is absent from setuptools' `packages` configuration. 2024-02-22T05:03:31,617 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-22T05:03:31,617 package, please make sure that 'galaxy.tools.bundled.expression_tools' is explicitly added 2024-02-22T05:03:31,618 to the `packages` configuration field. 2024-02-22T05:03:31,619 Alternatively, you can also rely on setuptools' discovery methods 2024-02-22T05:03:31,620 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-22T05:03:31,620 instead of `find_packages(...)`/`find:`). 2024-02-22T05:03:31,621 You can read more about "package discovery" on setuptools documentation page: 2024-02-22T05:03:31,622 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-22T05:03:31,623 If you don't want 'galaxy.tools.bundled.expression_tools' to be distributed and are 2024-02-22T05:03:31,624 already explicitly excluding 'galaxy.tools.bundled.expression_tools' via 2024-02-22T05:03:31,625 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-22T05:03:31,625 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-22T05:03:31,626 combination with a more fine grained `package-data` configuration. 2024-02-22T05:03:31,627 You can read more about "package data files" on setuptools documentation page: 2024-02-22T05:03:31,628 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-22T05:03:31,629 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-22T05:03:31,630 even if it does not contain any `.py` files. 2024-02-22T05:03:31,630 On the other hand, currently there is no concept of package data 2024-02-22T05:03:31,631 directory, all directories are treated like packages. 2024-02-22T05:03:31,631 ******************************************************************************** 2024-02-22T05:03:31,632 !! 2024-02-22T05:03:31,632 check.warn(importable) 2024-02-22T05:03:31,633 /tmp/pip-build-env-nkk3hlxu/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.extract' is absent from the `packages` configuration. 2024-02-22T05:03:31,633 !! 2024-02-22T05:03:31,634 ******************************************************************************** 2024-02-22T05:03:31,635 ############################ 2024-02-22T05:03:31,635 # Package would be ignored # 2024-02-22T05:03:31,636 ############################ 2024-02-22T05:03:31,636 Python recognizes 'galaxy.tools.bundled.extract' as an importable package[^1], 2024-02-22T05:03:31,636 but it is absent from setuptools' `packages` configuration. 2024-02-22T05:03:31,637 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-22T05:03:31,638 package, please make sure that 'galaxy.tools.bundled.extract' is explicitly added 2024-02-22T05:03:31,638 to the `packages` configuration field. 2024-02-22T05:03:31,639 Alternatively, you can also rely on setuptools' discovery methods 2024-02-22T05:03:31,640 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-22T05:03:31,640 instead of `find_packages(...)`/`find:`). 2024-02-22T05:03:31,641 You can read more about "package discovery" on setuptools documentation page: 2024-02-22T05:03:31,642 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-22T05:03:31,643 If you don't want 'galaxy.tools.bundled.extract' to be distributed and are 2024-02-22T05:03:31,644 already explicitly excluding 'galaxy.tools.bundled.extract' via 2024-02-22T05:03:31,644 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-22T05:03:31,645 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-22T05:03:31,645 combination with a more fine grained `package-data` configuration. 2024-02-22T05:03:31,646 You can read more about "package data files" on setuptools documentation page: 2024-02-22T05:03:31,647 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-22T05:03:31,649 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-22T05:03:31,650 even if it does not contain any `.py` files. 2024-02-22T05:03:31,650 On the other hand, currently there is no concept of package data 2024-02-22T05:03:31,651 directory, all directories are treated like packages. 2024-02-22T05:03:31,651 ******************************************************************************** 2024-02-22T05:03:31,652 !! 2024-02-22T05:03:31,653 check.warn(importable) 2024-02-22T05:03:31,653 /tmp/pip-build-env-nkk3hlxu/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.filters' is absent from the `packages` configuration. 2024-02-22T05:03:31,654 !! 2024-02-22T05:03:31,655 ******************************************************************************** 2024-02-22T05:03:31,655 ############################ 2024-02-22T05:03:31,656 # Package would be ignored # 2024-02-22T05:03:31,656 ############################ 2024-02-22T05:03:31,657 Python recognizes 'galaxy.tools.bundled.filters' as an importable package[^1], 2024-02-22T05:03:31,657 but it is absent from setuptools' `packages` configuration. 2024-02-22T05:03:31,658 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-22T05:03:31,658 package, please make sure that 'galaxy.tools.bundled.filters' is explicitly added 2024-02-22T05:03:31,659 to the `packages` configuration field. 2024-02-22T05:03:31,659 Alternatively, you can also rely on setuptools' discovery methods 2024-02-22T05:03:31,660 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-22T05:03:31,660 instead of `find_packages(...)`/`find:`). 2024-02-22T05:03:31,661 You can read more about "package discovery" on setuptools documentation page: 2024-02-22T05:03:31,662 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-22T05:03:31,663 If you don't want 'galaxy.tools.bundled.filters' to be distributed and are 2024-02-22T05:03:31,663 already explicitly excluding 'galaxy.tools.bundled.filters' via 2024-02-22T05:03:31,664 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-22T05:03:31,664 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-22T05:03:31,665 combination with a more fine grained `package-data` configuration. 2024-02-22T05:03:31,666 You can read more about "package data files" on setuptools documentation page: 2024-02-22T05:03:31,667 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-22T05:03:31,668 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-22T05:03:31,669 even if it does not contain any `.py` files. 2024-02-22T05:03:31,670 On the other hand, currently there is no concept of package data 2024-02-22T05:03:31,671 directory, all directories are treated like packages. 2024-02-22T05:03:31,671 ******************************************************************************** 2024-02-22T05:03:31,673 !! 2024-02-22T05:03:31,674 check.warn(importable) 2024-02-22T05:03:31,674 /tmp/pip-build-env-nkk3hlxu/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.filters.gff' is absent from the `packages` configuration. 2024-02-22T05:03:31,675 !! 2024-02-22T05:03:31,676 ******************************************************************************** 2024-02-22T05:03:31,676 ############################ 2024-02-22T05:03:31,677 # Package would be ignored # 2024-02-22T05:03:31,677 ############################ 2024-02-22T05:03:31,678 Python recognizes 'galaxy.tools.bundled.filters.gff' as an importable package[^1], 2024-02-22T05:03:31,678 but it is absent from setuptools' `packages` configuration. 2024-02-22T05:03:31,680 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-22T05:03:31,680 package, please make sure that 'galaxy.tools.bundled.filters.gff' is explicitly added 2024-02-22T05:03:31,681 to the `packages` configuration field. 2024-02-22T05:03:31,682 Alternatively, you can also rely on setuptools' discovery methods 2024-02-22T05:03:31,682 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-22T05:03:31,683 instead of `find_packages(...)`/`find:`). 2024-02-22T05:03:31,684 You can read more about "package discovery" on setuptools documentation page: 2024-02-22T05:03:31,686 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-22T05:03:31,687 If you don't want 'galaxy.tools.bundled.filters.gff' to be distributed and are 2024-02-22T05:03:31,687 already explicitly excluding 'galaxy.tools.bundled.filters.gff' via 2024-02-22T05:03:31,687 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-22T05:03:31,688 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-22T05:03:31,689 combination with a more fine grained `package-data` configuration. 2024-02-22T05:03:31,690 You can read more about "package data files" on setuptools documentation page: 2024-02-22T05:03:31,691 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-22T05:03:31,693 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-22T05:03:31,693 even if it does not contain any `.py` files. 2024-02-22T05:03:31,694 On the other hand, currently there is no concept of package data 2024-02-22T05:03:31,694 directory, all directories are treated like packages. 2024-02-22T05:03:31,695 ******************************************************************************** 2024-02-22T05:03:31,696 !! 2024-02-22T05:03:31,696 check.warn(importable) 2024-02-22T05:03:31,697 /tmp/pip-build-env-nkk3hlxu/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.interactive' is absent from the `packages` configuration. 2024-02-22T05:03:31,697 !! 2024-02-22T05:03:31,699 ******************************************************************************** 2024-02-22T05:03:31,699 ############################ 2024-02-22T05:03:31,700 # Package would be ignored # 2024-02-22T05:03:31,700 ############################ 2024-02-22T05:03:31,701 Python recognizes 'galaxy.tools.bundled.interactive' as an importable package[^1], 2024-02-22T05:03:31,702 but it is absent from setuptools' `packages` configuration. 2024-02-22T05:03:31,703 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-22T05:03:31,703 package, please make sure that 'galaxy.tools.bundled.interactive' is explicitly added 2024-02-22T05:03:31,704 to the `packages` configuration field. 2024-02-22T05:03:31,705 Alternatively, you can also rely on setuptools' discovery methods 2024-02-22T05:03:31,705 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-22T05:03:31,706 instead of `find_packages(...)`/`find:`). 2024-02-22T05:03:31,707 You can read more about "package discovery" on setuptools documentation page: 2024-02-22T05:03:31,708 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-22T05:03:31,709 If you don't want 'galaxy.tools.bundled.interactive' to be distributed and are 2024-02-22T05:03:31,710 already explicitly excluding 'galaxy.tools.bundled.interactive' via 2024-02-22T05:03:31,710 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-22T05:03:31,711 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-22T05:03:31,712 combination with a more fine grained `package-data` configuration. 2024-02-22T05:03:31,713 You can read more about "package data files" on setuptools documentation page: 2024-02-22T05:03:31,714 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-22T05:03:31,716 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-22T05:03:31,716 even if it does not contain any `.py` files. 2024-02-22T05:03:31,717 On the other hand, currently there is no concept of package data 2024-02-22T05:03:31,718 directory, all directories are treated like packages. 2024-02-22T05:03:31,718 ******************************************************************************** 2024-02-22T05:03:31,719 !! 2024-02-22T05:03:31,719 check.warn(importable) 2024-02-22T05:03:31,720 /tmp/pip-build-env-nkk3hlxu/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.maf' is absent from the `packages` configuration. 2024-02-22T05:03:31,720 !! 2024-02-22T05:03:31,721 ******************************************************************************** 2024-02-22T05:03:31,722 ############################ 2024-02-22T05:03:31,722 # Package would be ignored # 2024-02-22T05:03:31,723 ############################ 2024-02-22T05:03:31,724 Python recognizes 'galaxy.tools.bundled.maf' as an importable package[^1], 2024-02-22T05:03:31,724 but it is absent from setuptools' `packages` configuration. 2024-02-22T05:03:31,725 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-22T05:03:31,725 package, please make sure that 'galaxy.tools.bundled.maf' is explicitly added 2024-02-22T05:03:31,726 to the `packages` configuration field. 2024-02-22T05:03:31,727 Alternatively, you can also rely on setuptools' discovery methods 2024-02-22T05:03:31,727 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-22T05:03:31,728 instead of `find_packages(...)`/`find:`). 2024-02-22T05:03:31,729 You can read more about "package discovery" on setuptools documentation page: 2024-02-22T05:03:31,730 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-22T05:03:31,731 If you don't want 'galaxy.tools.bundled.maf' to be distributed and are 2024-02-22T05:03:31,732 already explicitly excluding 'galaxy.tools.bundled.maf' via 2024-02-22T05:03:31,732 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-22T05:03:31,733 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-22T05:03:31,734 combination with a more fine grained `package-data` configuration. 2024-02-22T05:03:31,735 You can read more about "package data files" on setuptools documentation page: 2024-02-22T05:03:31,736 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-22T05:03:31,737 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-22T05:03:31,738 even if it does not contain any `.py` files. 2024-02-22T05:03:31,739 On the other hand, currently there is no concept of package data 2024-02-22T05:03:31,739 directory, all directories are treated like packages. 2024-02-22T05:03:31,740 ******************************************************************************** 2024-02-22T05:03:31,741 !! 2024-02-22T05:03:31,741 check.warn(importable) 2024-02-22T05:03:31,742 /tmp/pip-build-env-nkk3hlxu/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.meme' is absent from the `packages` configuration. 2024-02-22T05:03:31,743 !! 2024-02-22T05:03:31,744 ******************************************************************************** 2024-02-22T05:03:31,745 ############################ 2024-02-22T05:03:31,745 # Package would be ignored # 2024-02-22T05:03:31,746 ############################ 2024-02-22T05:03:31,746 Python recognizes 'galaxy.tools.bundled.meme' as an importable package[^1], 2024-02-22T05:03:31,747 but it is absent from setuptools' `packages` configuration. 2024-02-22T05:03:31,748 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-22T05:03:31,749 package, please make sure that 'galaxy.tools.bundled.meme' is explicitly added 2024-02-22T05:03:31,749 to the `packages` configuration field. 2024-02-22T05:03:31,750 Alternatively, you can also rely on setuptools' discovery methods 2024-02-22T05:03:31,751 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-22T05:03:31,751 instead of `find_packages(...)`/`find:`). 2024-02-22T05:03:31,752 You can read more about "package discovery" on setuptools documentation page: 2024-02-22T05:03:31,754 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-22T05:03:31,755 If you don't want 'galaxy.tools.bundled.meme' to be distributed and are 2024-02-22T05:03:31,755 already explicitly excluding 'galaxy.tools.bundled.meme' via 2024-02-22T05:03:31,756 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-22T05:03:31,756 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-22T05:03:31,758 combination with a more fine grained `package-data` configuration. 2024-02-22T05:03:31,759 You can read more about "package data files" on setuptools documentation page: 2024-02-22T05:03:31,760 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-22T05:03:31,762 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-22T05:03:31,762 even if it does not contain any `.py` files. 2024-02-22T05:03:31,763 On the other hand, currently there is no concept of package data 2024-02-22T05:03:31,763 directory, all directories are treated like packages. 2024-02-22T05:03:31,765 ******************************************************************************** 2024-02-22T05:03:31,766 !! 2024-02-22T05:03:31,768 check.warn(importable) 2024-02-22T05:03:31,769 /tmp/pip-build-env-nkk3hlxu/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.metag_tools' is absent from the `packages` configuration. 2024-02-22T05:03:31,769 !! 2024-02-22T05:03:31,771 ******************************************************************************** 2024-02-22T05:03:31,771 ############################ 2024-02-22T05:03:31,772 # Package would be ignored # 2024-02-22T05:03:31,773 ############################ 2024-02-22T05:03:31,774 Python recognizes 'galaxy.tools.bundled.metag_tools' as an importable package[^1], 2024-02-22T05:03:31,775 but it is absent from setuptools' `packages` configuration. 2024-02-22T05:03:31,776 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-22T05:03:31,777 package, please make sure that 'galaxy.tools.bundled.metag_tools' is explicitly added 2024-02-22T05:03:31,778 to the `packages` configuration field. 2024-02-22T05:03:31,780 Alternatively, you can also rely on setuptools' discovery methods 2024-02-22T05:03:31,780 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-22T05:03:31,781 instead of `find_packages(...)`/`find:`). 2024-02-22T05:03:31,783 You can read more about "package discovery" on setuptools documentation page: 2024-02-22T05:03:31,785 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-22T05:03:31,786 If you don't want 'galaxy.tools.bundled.metag_tools' to be distributed and are 2024-02-22T05:03:31,786 already explicitly excluding 'galaxy.tools.bundled.metag_tools' via 2024-02-22T05:03:31,787 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-22T05:03:31,788 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-22T05:03:31,788 combination with a more fine grained `package-data` configuration. 2024-02-22T05:03:31,789 You can read more about "package data files" on setuptools documentation page: 2024-02-22T05:03:31,790 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-22T05:03:31,791 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-22T05:03:31,792 even if it does not contain any `.py` files. 2024-02-22T05:03:31,792 On the other hand, currently there is no concept of package data 2024-02-22T05:03:31,792 directory, all directories are treated like packages. 2024-02-22T05:03:31,793 ******************************************************************************** 2024-02-22T05:03:31,794 !! 2024-02-22T05:03:31,794 check.warn(importable) 2024-02-22T05:03:31,795 /tmp/pip-build-env-nkk3hlxu/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.next_gen_conversion' is absent from the `packages` configuration. 2024-02-22T05:03:31,795 !! 2024-02-22T05:03:31,796 ******************************************************************************** 2024-02-22T05:03:31,796 ############################ 2024-02-22T05:03:31,797 # Package would be ignored # 2024-02-22T05:03:31,797 ############################ 2024-02-22T05:03:31,798 Python recognizes 'galaxy.tools.bundled.next_gen_conversion' as an importable package[^1], 2024-02-22T05:03:31,798 but it is absent from setuptools' `packages` configuration. 2024-02-22T05:03:31,799 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-22T05:03:31,800 package, please make sure that 'galaxy.tools.bundled.next_gen_conversion' is explicitly added 2024-02-22T05:03:31,800 to the `packages` configuration field. 2024-02-22T05:03:31,801 Alternatively, you can also rely on setuptools' discovery methods 2024-02-22T05:03:31,802 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-22T05:03:31,802 instead of `find_packages(...)`/`find:`). 2024-02-22T05:03:31,803 You can read more about "package discovery" on setuptools documentation page: 2024-02-22T05:03:31,804 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-22T05:03:31,805 If you don't want 'galaxy.tools.bundled.next_gen_conversion' to be distributed and are 2024-02-22T05:03:31,806 already explicitly excluding 'galaxy.tools.bundled.next_gen_conversion' via 2024-02-22T05:03:31,806 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-22T05:03:31,807 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-22T05:03:31,807 combination with a more fine grained `package-data` configuration. 2024-02-22T05:03:31,808 You can read more about "package data files" on setuptools documentation page: 2024-02-22T05:03:31,809 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-22T05:03:31,811 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-22T05:03:31,811 even if it does not contain any `.py` files. 2024-02-22T05:03:31,812 On the other hand, currently there is no concept of package data 2024-02-22T05:03:31,812 directory, all directories are treated like packages. 2024-02-22T05:03:31,813 ******************************************************************************** 2024-02-22T05:03:31,814 !! 2024-02-22T05:03:31,814 check.warn(importable) 2024-02-22T05:03:31,815 /tmp/pip-build-env-nkk3hlxu/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.ngs_simulation' is absent from the `packages` configuration. 2024-02-22T05:03:31,815 !! 2024-02-22T05:03:31,816 ******************************************************************************** 2024-02-22T05:03:31,817 ############################ 2024-02-22T05:03:31,817 # Package would be ignored # 2024-02-22T05:03:31,818 ############################ 2024-02-22T05:03:31,818 Python recognizes 'galaxy.tools.bundled.ngs_simulation' as an importable package[^1], 2024-02-22T05:03:31,819 but it is absent from setuptools' `packages` configuration. 2024-02-22T05:03:31,820 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-22T05:03:31,820 package, please make sure that 'galaxy.tools.bundled.ngs_simulation' is explicitly added 2024-02-22T05:03:31,821 to the `packages` configuration field. 2024-02-22T05:03:31,822 Alternatively, you can also rely on setuptools' discovery methods 2024-02-22T05:03:31,822 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-22T05:03:31,823 instead of `find_packages(...)`/`find:`). 2024-02-22T05:03:31,824 You can read more about "package discovery" on setuptools documentation page: 2024-02-22T05:03:31,825 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-22T05:03:31,826 If you don't want 'galaxy.tools.bundled.ngs_simulation' to be distributed and are 2024-02-22T05:03:31,827 already explicitly excluding 'galaxy.tools.bundled.ngs_simulation' via 2024-02-22T05:03:31,827 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-22T05:03:31,828 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-22T05:03:31,828 combination with a more fine grained `package-data` configuration. 2024-02-22T05:03:31,829 You can read more about "package data files" on setuptools documentation page: 2024-02-22T05:03:31,830 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-22T05:03:31,832 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-22T05:03:31,833 even if it does not contain any `.py` files. 2024-02-22T05:03:31,833 On the other hand, currently there is no concept of package data 2024-02-22T05:03:31,834 directory, all directories are treated like packages. 2024-02-22T05:03:31,834 ******************************************************************************** 2024-02-22T05:03:31,835 !! 2024-02-22T05:03:31,836 check.warn(importable) 2024-02-22T05:03:31,836 /tmp/pip-build-env-nkk3hlxu/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.phenotype_association' is absent from the `packages` configuration. 2024-02-22T05:03:31,837 !! 2024-02-22T05:03:31,838 ******************************************************************************** 2024-02-22T05:03:31,839 ############################ 2024-02-22T05:03:31,839 # Package would be ignored # 2024-02-22T05:03:31,840 ############################ 2024-02-22T05:03:31,840 Python recognizes 'galaxy.tools.bundled.phenotype_association' as an importable package[^1], 2024-02-22T05:03:31,841 but it is absent from setuptools' `packages` configuration. 2024-02-22T05:03:31,842 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-22T05:03:31,842 package, please make sure that 'galaxy.tools.bundled.phenotype_association' is explicitly added 2024-02-22T05:03:31,843 to the `packages` configuration field. 2024-02-22T05:03:31,844 Alternatively, you can also rely on setuptools' discovery methods 2024-02-22T05:03:31,845 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-22T05:03:31,845 instead of `find_packages(...)`/`find:`). 2024-02-22T05:03:31,847 You can read more about "package discovery" on setuptools documentation page: 2024-02-22T05:03:31,847 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-22T05:03:31,848 If you don't want 'galaxy.tools.bundled.phenotype_association' to be distributed and are 2024-02-22T05:03:31,849 already explicitly excluding 'galaxy.tools.bundled.phenotype_association' via 2024-02-22T05:03:31,849 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-22T05:03:31,850 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-22T05:03:31,850 combination with a more fine grained `package-data` configuration. 2024-02-22T05:03:31,851 You can read more about "package data files" on setuptools documentation page: 2024-02-22T05:03:31,852 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-22T05:03:31,854 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-22T05:03:31,854 even if it does not contain any `.py` files. 2024-02-22T05:03:31,855 On the other hand, currently there is no concept of package data 2024-02-22T05:03:31,855 directory, all directories are treated like packages. 2024-02-22T05:03:31,856 ******************************************************************************** 2024-02-22T05:03:31,857 !! 2024-02-22T05:03:31,857 check.warn(importable) 2024-02-22T05:03:31,858 /tmp/pip-build-env-nkk3hlxu/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.plotting' is absent from the `packages` configuration. 2024-02-22T05:03:31,858 !! 2024-02-22T05:03:31,859 ******************************************************************************** 2024-02-22T05:03:31,860 ############################ 2024-02-22T05:03:31,861 # Package would be ignored # 2024-02-22T05:03:31,861 ############################ 2024-02-22T05:03:31,862 Python recognizes 'galaxy.tools.bundled.plotting' as an importable package[^1], 2024-02-22T05:03:31,862 but it is absent from setuptools' `packages` configuration. 2024-02-22T05:03:31,863 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-22T05:03:31,864 package, please make sure that 'galaxy.tools.bundled.plotting' is explicitly added 2024-02-22T05:03:31,865 to the `packages` configuration field. 2024-02-22T05:03:31,866 Alternatively, you can also rely on setuptools' discovery methods 2024-02-22T05:03:31,866 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-22T05:03:31,867 instead of `find_packages(...)`/`find:`). 2024-02-22T05:03:31,868 You can read more about "package discovery" on setuptools documentation page: 2024-02-22T05:03:31,869 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-22T05:03:31,871 If you don't want 'galaxy.tools.bundled.plotting' to be distributed and are 2024-02-22T05:03:31,871 already explicitly excluding 'galaxy.tools.bundled.plotting' via 2024-02-22T05:03:31,872 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-22T05:03:31,872 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-22T05:03:31,873 combination with a more fine grained `package-data` configuration. 2024-02-22T05:03:31,874 You can read more about "package data files" on setuptools documentation page: 2024-02-22T05:03:31,875 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-22T05:03:31,876 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-22T05:03:31,877 even if it does not contain any `.py` files. 2024-02-22T05:03:31,878 On the other hand, currently there is no concept of package data 2024-02-22T05:03:31,881 directory, all directories are treated like packages. 2024-02-22T05:03:31,889 ******************************************************************************** 2024-02-22T05:03:31,962 !! 2024-02-22T05:03:32,083 check.warn(importable) 2024-02-22T05:03:32,455 /tmp/pip-build-env-nkk3hlxu/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.solid_tools' is absent from the `packages` configuration. 2024-02-22T05:03:32,737 !! 2024-02-22T05:03:32,832 ******************************************************************************** 2024-02-22T05:03:32,833 ############################ 2024-02-22T05:03:32,835 # Package would be ignored # 2024-02-22T05:03:32,836 ############################ 2024-02-22T05:03:32,837 Python recognizes 'galaxy.tools.bundled.solid_tools' as an importable package[^1], 2024-02-22T05:03:32,839 but it is absent from setuptools' `packages` configuration. 2024-02-22T05:03:32,840 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-22T05:03:32,842 package, please make sure that 'galaxy.tools.bundled.solid_tools' is explicitly added 2024-02-22T05:03:32,842 to the `packages` configuration field. 2024-02-22T05:03:32,844 Alternatively, you can also rely on setuptools' discovery methods 2024-02-22T05:03:32,845 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-22T05:03:32,846 instead of `find_packages(...)`/`find:`). 2024-02-22T05:03:32,848 You can read more about "package discovery" on setuptools documentation page: 2024-02-22T05:03:32,850 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-22T05:03:32,852 If you don't want 'galaxy.tools.bundled.solid_tools' to be distributed and are 2024-02-22T05:03:32,853 already explicitly excluding 'galaxy.tools.bundled.solid_tools' via 2024-02-22T05:03:32,854 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-22T05:03:32,855 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-22T05:03:32,856 combination with a more fine grained `package-data` configuration. 2024-02-22T05:03:32,858 You can read more about "package data files" on setuptools documentation page: 2024-02-22T05:03:32,859 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-22T05:03:32,862 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-22T05:03:32,863 even if it does not contain any `.py` files. 2024-02-22T05:03:32,864 On the other hand, currently there is no concept of package data 2024-02-22T05:03:32,865 directory, all directories are treated like packages. 2024-02-22T05:03:32,866 ******************************************************************************** 2024-02-22T05:03:32,868 !! 2024-02-22T05:03:32,868 check.warn(importable) 2024-02-22T05:03:32,870 /tmp/pip-build-env-nkk3hlxu/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.sr_assembly' is absent from the `packages` configuration. 2024-02-22T05:03:32,871 !! 2024-02-22T05:03:32,872 ******************************************************************************** 2024-02-22T05:03:32,873 ############################ 2024-02-22T05:03:32,874 # Package would be ignored # 2024-02-22T05:03:32,875 ############################ 2024-02-22T05:03:32,876 Python recognizes 'galaxy.tools.bundled.sr_assembly' as an importable package[^1], 2024-02-22T05:03:32,876 but it is absent from setuptools' `packages` configuration. 2024-02-22T05:03:32,878 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-22T05:03:32,879 package, please make sure that 'galaxy.tools.bundled.sr_assembly' is explicitly added 2024-02-22T05:03:32,879 to the `packages` configuration field. 2024-02-22T05:03:32,881 Alternatively, you can also rely on setuptools' discovery methods 2024-02-22T05:03:32,881 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-22T05:03:32,882 instead of `find_packages(...)`/`find:`). 2024-02-22T05:03:32,883 You can read more about "package discovery" on setuptools documentation page: 2024-02-22T05:03:32,884 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-22T05:03:32,885 If you don't want 'galaxy.tools.bundled.sr_assembly' to be distributed and are 2024-02-22T05:03:32,886 already explicitly excluding 'galaxy.tools.bundled.sr_assembly' via 2024-02-22T05:03:32,887 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-22T05:03:32,887 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-22T05:03:32,888 combination with a more fine grained `package-data` configuration. 2024-02-22T05:03:32,889 You can read more about "package data files" on setuptools documentation page: 2024-02-22T05:03:32,890 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-22T05:03:32,892 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-22T05:03:32,893 even if it does not contain any `.py` files. 2024-02-22T05:03:32,893 On the other hand, currently there is no concept of package data 2024-02-22T05:03:32,894 directory, all directories are treated like packages. 2024-02-22T05:03:32,895 ******************************************************************************** 2024-02-22T05:03:32,896 !! 2024-02-22T05:03:32,896 check.warn(importable) 2024-02-22T05:03:32,897 /tmp/pip-build-env-nkk3hlxu/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.sr_mapping' is absent from the `packages` configuration. 2024-02-22T05:03:32,898 !! 2024-02-22T05:03:32,899 ******************************************************************************** 2024-02-22T05:03:32,900 ############################ 2024-02-22T05:03:32,900 # Package would be ignored # 2024-02-22T05:03:32,901 ############################ 2024-02-22T05:03:32,902 Python recognizes 'galaxy.tools.bundled.sr_mapping' as an importable package[^1], 2024-02-22T05:03:32,902 but it is absent from setuptools' `packages` configuration. 2024-02-22T05:03:32,904 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-22T05:03:32,904 package, please make sure that 'galaxy.tools.bundled.sr_mapping' is explicitly added 2024-02-22T05:03:32,905 to the `packages` configuration field. 2024-02-22T05:03:32,906 Alternatively, you can also rely on setuptools' discovery methods 2024-02-22T05:03:32,907 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-22T05:03:32,908 instead of `find_packages(...)`/`find:`). 2024-02-22T05:03:32,909 You can read more about "package discovery" on setuptools documentation page: 2024-02-22T05:03:32,911 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-22T05:03:32,912 If you don't want 'galaxy.tools.bundled.sr_mapping' to be distributed and are 2024-02-22T05:03:32,913 already explicitly excluding 'galaxy.tools.bundled.sr_mapping' via 2024-02-22T05:03:32,914 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-22T05:03:32,915 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-22T05:03:32,916 combination with a more fine grained `package-data` configuration. 2024-02-22T05:03:32,917 You can read more about "package data files" on setuptools documentation page: 2024-02-22T05:03:32,918 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-22T05:03:32,920 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-22T05:03:32,920 even if it does not contain any `.py` files. 2024-02-22T05:03:32,921 On the other hand, currently there is no concept of package data 2024-02-22T05:03:32,921 directory, all directories are treated like packages. 2024-02-22T05:03:32,922 ******************************************************************************** 2024-02-22T05:03:32,923 !! 2024-02-22T05:03:32,924 check.warn(importable) 2024-02-22T05:03:32,924 /tmp/pip-build-env-nkk3hlxu/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.stats' is absent from the `packages` configuration. 2024-02-22T05:03:32,925 !! 2024-02-22T05:03:32,926 ******************************************************************************** 2024-02-22T05:03:32,927 ############################ 2024-02-22T05:03:32,927 # Package would be ignored # 2024-02-22T05:03:32,928 ############################ 2024-02-22T05:03:32,929 Python recognizes 'galaxy.tools.bundled.stats' as an importable package[^1], 2024-02-22T05:03:32,929 but it is absent from setuptools' `packages` configuration. 2024-02-22T05:03:32,931 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-22T05:03:32,931 package, please make sure that 'galaxy.tools.bundled.stats' is explicitly added 2024-02-22T05:03:32,932 to the `packages` configuration field. 2024-02-22T05:03:32,933 Alternatively, you can also rely on setuptools' discovery methods 2024-02-22T05:03:32,934 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-22T05:03:32,935 instead of `find_packages(...)`/`find:`). 2024-02-22T05:03:32,936 You can read more about "package discovery" on setuptools documentation page: 2024-02-22T05:03:32,938 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-22T05:03:32,939 If you don't want 'galaxy.tools.bundled.stats' to be distributed and are 2024-02-22T05:03:32,940 already explicitly excluding 'galaxy.tools.bundled.stats' via 2024-02-22T05:03:32,940 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-22T05:03:32,941 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-22T05:03:32,942 combination with a more fine grained `package-data` configuration. 2024-02-22T05:03:32,943 You can read more about "package data files" on setuptools documentation page: 2024-02-22T05:03:32,944 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-22T05:03:32,946 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-22T05:03:32,947 even if it does not contain any `.py` files. 2024-02-22T05:03:32,947 On the other hand, currently there is no concept of package data 2024-02-22T05:03:32,948 directory, all directories are treated like packages. 2024-02-22T05:03:32,949 ******************************************************************************** 2024-02-22T05:03:32,950 !! 2024-02-22T05:03:32,951 check.warn(importable) 2024-02-22T05:03:32,951 copying galaxy_ext/py.typed -> build/lib/galaxy_ext 2024-02-22T05:03:32,952 copying galaxy/py.typed -> build/lib/galaxy 2024-02-22T05:03:32,953 copying tool_shed_client/py.typed -> build/lib/tool_shed_client 2024-02-22T05:03:32,954 copying galaxy/tools/apply_rules.xml -> build/lib/galaxy/tools 2024-02-22T05:03:32,954 copying galaxy/tools/build_list.xml -> build/lib/galaxy/tools 2024-02-22T05:03:32,955 copying galaxy/tools/build_list_1.2.0.xml -> build/lib/galaxy/tools 2024-02-22T05:03:32,956 copying galaxy/tools/data_fetch.xml -> build/lib/galaxy/tools 2024-02-22T05:03:32,956 copying galaxy/tools/duplicate_file_to_collection.xml -> build/lib/galaxy/tools 2024-02-22T05:03:32,957 copying galaxy/tools/extract_dataset.xml -> build/lib/galaxy/tools 2024-02-22T05:03:32,958 copying galaxy/tools/filter_empty_collection.xml -> build/lib/galaxy/tools 2024-02-22T05:03:32,958 copying galaxy/tools/filter_failed_collection.xml -> build/lib/galaxy/tools 2024-02-22T05:03:32,959 copying galaxy/tools/filter_from_file.xml -> build/lib/galaxy/tools 2024-02-22T05:03:32,960 copying galaxy/tools/flatten_collection.xml -> build/lib/galaxy/tools 2024-02-22T05:03:32,960 copying galaxy/tools/merge_collection.xml -> build/lib/galaxy/tools 2024-02-22T05:03:32,961 copying galaxy/tools/relabel_from_file.xml -> build/lib/galaxy/tools 2024-02-22T05:03:32,961 copying galaxy/tools/sort_collection_list.xml -> build/lib/galaxy/tools 2024-02-22T05:03:32,962 copying galaxy/tools/tag_collection_from_file.xml -> build/lib/galaxy/tools 2024-02-22T05:03:32,963 copying galaxy/tools/unzip_collection.xml -> build/lib/galaxy/tools 2024-02-22T05:03:32,963 copying galaxy/tools/zip_collection.xml -> build/lib/galaxy/tools 2024-02-22T05:03:32,964 creating build/lib/galaxy/tools/bundled 2024-02-22T05:03:32,965 copying galaxy/tools/bundled/__init__.py -> build/lib/galaxy/tools/bundled 2024-02-22T05:03:32,965 creating build/lib/galaxy/tools/bundled/data_export 2024-02-22T05:03:32,966 copying galaxy/tools/bundled/data_export/export_remote.py -> build/lib/galaxy/tools/bundled/data_export 2024-02-22T05:03:32,967 copying galaxy/tools/bundled/data_export/export_remote.xml -> build/lib/galaxy/tools/bundled/data_export 2024-02-22T05:03:32,968 copying galaxy/tools/bundled/data_export/send.py -> build/lib/galaxy/tools/bundled/data_export 2024-02-22T05:03:32,968 copying galaxy/tools/bundled/data_export/send.xml -> build/lib/galaxy/tools/bundled/data_export 2024-02-22T05:03:32,969 creating build/lib/galaxy/tools/bundled/data_source 2024-02-22T05:03:32,970 copying galaxy/tools/bundled/data_source/__init__.py -> build/lib/galaxy/tools/bundled/data_source 2024-02-22T05:03:32,971 copying galaxy/tools/bundled/data_source/access_libraries.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-22T05:03:32,971 copying galaxy/tools/bundled/data_source/biomart.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-22T05:03:32,972 copying galaxy/tools/bundled/data_source/biomart_test.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-22T05:03:32,973 copying galaxy/tools/bundled/data_source/cbi_rice_mart.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-22T05:03:32,973 copying galaxy/tools/bundled/data_source/data_source.py -> build/lib/galaxy/tools/bundled/data_source 2024-02-22T05:03:32,974 copying galaxy/tools/bundled/data_source/ebi_sra.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-22T05:03:32,975 copying galaxy/tools/bundled/data_source/eupathdb.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-22T05:03:32,975 copying galaxy/tools/bundled/data_source/fly_modencode.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-22T05:03:32,976 copying galaxy/tools/bundled/data_source/flymine.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-22T05:03:32,976 copying galaxy/tools/bundled/data_source/flymine_test.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-22T05:03:32,977 copying galaxy/tools/bundled/data_source/genbank.py -> build/lib/galaxy/tools/bundled/data_source 2024-02-22T05:03:32,977 copying galaxy/tools/bundled/data_source/genbank.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-22T05:03:32,978 copying galaxy/tools/bundled/data_source/gramene_mart.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-22T05:03:32,979 copying galaxy/tools/bundled/data_source/hapmapmart.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-22T05:03:32,979 copying galaxy/tools/bundled/data_source/hbvar.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-22T05:03:32,979 copying galaxy/tools/bundled/data_source/import.py -> build/lib/galaxy/tools/bundled/data_source 2024-02-22T05:03:32,980 copying galaxy/tools/bundled/data_source/import.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-22T05:03:32,981 copying galaxy/tools/bundled/data_source/intermine.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-22T05:03:32,981 copying galaxy/tools/bundled/data_source/metabolicmine.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-22T05:03:32,982 copying galaxy/tools/bundled/data_source/microbial_import.py -> build/lib/galaxy/tools/bundled/data_source 2024-02-22T05:03:32,982 copying galaxy/tools/bundled/data_source/microbial_import.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-22T05:03:32,983 copying galaxy/tools/bundled/data_source/microbial_import_code.py -> build/lib/galaxy/tools/bundled/data_source 2024-02-22T05:03:32,983 copying galaxy/tools/bundled/data_source/modmine.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-22T05:03:32,984 copying galaxy/tools/bundled/data_source/mousemine.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-22T05:03:32,984 copying galaxy/tools/bundled/data_source/ncbi_datasets.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-22T05:03:32,985 copying galaxy/tools/bundled/data_source/ratmine.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-22T05:03:32,985 copying galaxy/tools/bundled/data_source/sra.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-22T05:03:32,986 copying galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-22T05:03:32,986 copying galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-22T05:03:32,987 copying galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-22T05:03:32,987 copying galaxy/tools/bundled/data_source/upload.py -> build/lib/galaxy/tools/bundled/data_source 2024-02-22T05:03:32,988 copying galaxy/tools/bundled/data_source/upload.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-22T05:03:32,989 copying galaxy/tools/bundled/data_source/worm_modencode.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-22T05:03:32,989 copying galaxy/tools/bundled/data_source/wormbase.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-22T05:03:32,990 copying galaxy/tools/bundled/data_source/wormbase_test.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-22T05:03:32,991 copying galaxy/tools/bundled/data_source/yeastmine.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-22T05:03:32,991 copying galaxy/tools/bundled/data_source/zebrafishmine.xml -> build/lib/galaxy/tools/bundled/data_source 2024-02-22T05:03:32,992 creating build/lib/galaxy/tools/bundled/expression_tools 2024-02-22T05:03:32,992 copying galaxy/tools/bundled/expression_tools/expression_macros.xml -> build/lib/galaxy/tools/bundled/expression_tools 2024-02-22T05:03:32,993 copying galaxy/tools/bundled/expression_tools/parse_values_from_file.xml -> build/lib/galaxy/tools/bundled/expression_tools 2024-02-22T05:03:32,994 copying galaxy/tools/bundled/expression_tools/pick_value.xml -> build/lib/galaxy/tools/bundled/expression_tools 2024-02-22T05:03:32,994 creating build/lib/galaxy/tools/bundled/extract 2024-02-22T05:03:32,995 copying galaxy/tools/bundled/extract/__init__.py -> build/lib/galaxy/tools/bundled/extract 2024-02-22T05:03:32,995 copying galaxy/tools/bundled/extract/extract_genomic_dna.py -> build/lib/galaxy/tools/bundled/extract 2024-02-22T05:03:32,996 copying galaxy/tools/bundled/extract/extract_genomic_dna.xml -> build/lib/galaxy/tools/bundled/extract 2024-02-22T05:03:32,996 copying galaxy/tools/bundled/extract/liftOver_wrapper.py -> build/lib/galaxy/tools/bundled/extract 2024-02-22T05:03:32,997 copying galaxy/tools/bundled/extract/liftOver_wrapper.xml -> build/lib/galaxy/tools/bundled/extract 2024-02-22T05:03:32,997 creating build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:32,998 copying galaxy/tools/bundled/filters/CreateInterval.pl -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:32,999 copying galaxy/tools/bundled/filters/CreateInterval.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:32,999 copying galaxy/tools/bundled/filters/__init__.py -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,000 copying galaxy/tools/bundled/filters/axt_to_concat_fasta.py -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,000 copying galaxy/tools/bundled/filters/axt_to_concat_fasta.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,000 copying galaxy/tools/bundled/filters/axt_to_fasta.py -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,001 copying galaxy/tools/bundled/filters/axt_to_fasta.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,001 copying galaxy/tools/bundled/filters/axt_to_lav.py -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,002 copying galaxy/tools/bundled/filters/axt_to_lav.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,002 copying galaxy/tools/bundled/filters/axt_to_lav_code.py -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,003 copying galaxy/tools/bundled/filters/bed2gff.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,003 copying galaxy/tools/bundled/filters/bed_to_bigbed.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,004 copying galaxy/tools/bundled/filters/bed_to_gff_converter.py -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,004 copying galaxy/tools/bundled/filters/catWrapper.py -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,005 copying galaxy/tools/bundled/filters/catWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,005 copying galaxy/tools/bundled/filters/changeCase.pl -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,006 copying galaxy/tools/bundled/filters/changeCase.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,006 copying galaxy/tools/bundled/filters/commWrapper.pl -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,007 copying galaxy/tools/bundled/filters/commWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,007 copying galaxy/tools/bundled/filters/compare.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,008 copying galaxy/tools/bundled/filters/condense_characters.pl -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,009 copying galaxy/tools/bundled/filters/condense_characters.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,009 copying galaxy/tools/bundled/filters/convert_characters.py -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,010 copying galaxy/tools/bundled/filters/convert_characters.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,010 copying galaxy/tools/bundled/filters/cutWrapper.pl -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,011 copying galaxy/tools/bundled/filters/cutWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,011 copying galaxy/tools/bundled/filters/fileGrep.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,012 copying galaxy/tools/bundled/filters/fixedValueColumn.pl -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,012 copying galaxy/tools/bundled/filters/fixedValueColumn.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,013 copying galaxy/tools/bundled/filters/gff2bed.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,013 copying galaxy/tools/bundled/filters/gff_to_bed_converter.py -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,014 copying galaxy/tools/bundled/filters/grep.py -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,015 copying galaxy/tools/bundled/filters/grep.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,015 copying galaxy/tools/bundled/filters/grep_1.0.1.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,016 copying galaxy/tools/bundled/filters/gtf2bedgraph.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,016 copying galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,017 copying galaxy/tools/bundled/filters/headWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,017 copying galaxy/tools/bundled/filters/join.py -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,017 copying galaxy/tools/bundled/filters/joinWrapper.py -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,018 copying galaxy/tools/bundled/filters/joiner.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,019 copying galaxy/tools/bundled/filters/joiner2.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,019 copying galaxy/tools/bundled/filters/lav_to_bed.py -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,019 copying galaxy/tools/bundled/filters/lav_to_bed.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,020 copying galaxy/tools/bundled/filters/lav_to_bed_code.py -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,020 copying galaxy/tools/bundled/filters/mergeCols.py -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,021 copying galaxy/tools/bundled/filters/mergeCols.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,021 copying galaxy/tools/bundled/filters/pasteWrapper.pl -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,022 copying galaxy/tools/bundled/filters/pasteWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,022 copying galaxy/tools/bundled/filters/random_lines_two_pass.py -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,023 copying galaxy/tools/bundled/filters/randomlines.py -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,023 copying galaxy/tools/bundled/filters/randomlines.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,024 copying galaxy/tools/bundled/filters/remove_beginning.pl -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,024 copying galaxy/tools/bundled/filters/remove_beginning.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,025 copying galaxy/tools/bundled/filters/secure_hash_message_digest.py -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,025 copying galaxy/tools/bundled/filters/secure_hash_message_digest.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,026 copying galaxy/tools/bundled/filters/sff_extract.py -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,026 copying galaxy/tools/bundled/filters/sff_extractor.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,027 copying galaxy/tools/bundled/filters/sorter.py -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,028 copying galaxy/tools/bundled/filters/sorter.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,028 copying galaxy/tools/bundled/filters/tailWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,029 copying galaxy/tools/bundled/filters/trimmer.py -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,029 copying galaxy/tools/bundled/filters/trimmer.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,030 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.py -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,030 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,031 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.py -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,032 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,032 copying galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.py -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,033 copying galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,034 copying galaxy/tools/bundled/filters/uniq.py -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,034 copying galaxy/tools/bundled/filters/uniq.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,034 copying galaxy/tools/bundled/filters/wc_gnu.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,035 copying galaxy/tools/bundled/filters/wig_to_bigwig.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,035 copying galaxy/tools/bundled/filters/wiggle_to_simple.py -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,036 copying galaxy/tools/bundled/filters/wiggle_to_simple.xml -> build/lib/galaxy/tools/bundled/filters 2024-02-22T05:03:33,036 creating build/lib/galaxy/tools/bundled/filters/gff 2024-02-22T05:03:33,037 copying galaxy/tools/bundled/filters/gff/__init__.py -> build/lib/galaxy/tools/bundled/filters/gff 2024-02-22T05:03:33,038 copying galaxy/tools/bundled/filters/gff/extract_GFF_Features.py -> build/lib/galaxy/tools/bundled/filters/gff 2024-02-22T05:03:33,038 copying galaxy/tools/bundled/filters/gff/extract_GFF_Features.xml -> build/lib/galaxy/tools/bundled/filters/gff 2024-02-22T05:03:33,041 copying galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.py -> build/lib/galaxy/tools/bundled/filters/gff 2024-02-22T05:03:33,044 copying galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.xml -> build/lib/galaxy/tools/bundled/filters/gff 2024-02-22T05:03:33,046 copying galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.py -> build/lib/galaxy/tools/bundled/filters/gff 2024-02-22T05:03:33,048 copying galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.xml -> build/lib/galaxy/tools/bundled/filters/gff 2024-02-22T05:03:33,051 copying galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.py -> build/lib/galaxy/tools/bundled/filters/gff 2024-02-22T05:03:33,053 copying galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.xml -> build/lib/galaxy/tools/bundled/filters/gff 2024-02-22T05:03:33,055 creating build/lib/galaxy/tools/bundled/interactive 2024-02-22T05:03:33,056 copying galaxy/tools/bundled/interactive/default_notebook.ipynb -> build/lib/galaxy/tools/bundled/interactive 2024-02-22T05:03:33,059 copying galaxy/tools/bundled/interactive/interactivetool_askomics.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-22T05:03:33,061 copying galaxy/tools/bundled/interactive/interactivetool_bam_iobio.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-22T05:03:33,063 copying galaxy/tools/bundled/interactive/interactivetool_cellxgene_0.16.2.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-22T05:03:33,065 copying galaxy/tools/bundled/interactive/interactivetool_cellxgene_1.1.1.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-22T05:03:33,068 copying galaxy/tools/bundled/interactive/interactivetool_climate_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-22T05:03:33,071 copying galaxy/tools/bundled/interactive/interactivetool_ethercalc.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-22T05:03:33,073 copying galaxy/tools/bundled/interactive/interactivetool_geoexplorer.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-22T05:03:33,075 copying galaxy/tools/bundled/interactive/interactivetool_guacamole_desktop.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-22T05:03:33,077 copying galaxy/tools/bundled/interactive/interactivetool_hicbrowser.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-22T05:03:33,080 copying galaxy/tools/bundled/interactive/interactivetool_higlass.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-22T05:03:33,083 copying galaxy/tools/bundled/interactive/interactivetool_isee.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-22T05:03:33,085 copying galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-22T05:03:33,087 copying galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.0.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-22T05:03:33,091 copying galaxy/tools/bundled/interactive/interactivetool_metashark.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-22T05:03:33,093 copying galaxy/tools/bundled/interactive/interactivetool_mgnify_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-22T05:03:33,095 copying galaxy/tools/bundled/interactive/interactivetool_ml_jupyter_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-22T05:03:33,098 copying galaxy/tools/bundled/interactive/interactivetool_neo4j.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-22T05:03:33,100 copying galaxy/tools/bundled/interactive/interactivetool_openrefine.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-22T05:03:33,102 copying galaxy/tools/bundled/interactive/interactivetool_pangeo_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-22T05:03:33,105 copying galaxy/tools/bundled/interactive/interactivetool_panoply.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-22T05:03:33,107 copying galaxy/tools/bundled/interactive/interactivetool_paraview.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-22T05:03:33,109 copying galaxy/tools/bundled/interactive/interactivetool_pavian.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-22T05:03:33,111 copying galaxy/tools/bundled/interactive/interactivetool_phinch.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-22T05:03:33,113 copying galaxy/tools/bundled/interactive/interactivetool_pyiron.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-22T05:03:33,116 copying galaxy/tools/bundled/interactive/interactivetool_radiant.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-22T05:03:33,118 copying galaxy/tools/bundled/interactive/interactivetool_rstudio.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-22T05:03:33,120 copying galaxy/tools/bundled/interactive/interactivetool_simtext_app.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-22T05:03:33,123 copying galaxy/tools/bundled/interactive/interactivetool_vcf_iobio.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-22T05:03:33,125 copying galaxy/tools/bundled/interactive/interactivetool_vrm_editor.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-22T05:03:33,127 copying galaxy/tools/bundled/interactive/interactivetool_wallace.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-22T05:03:33,129 copying galaxy/tools/bundled/interactive/interactivetool_wilson.xml -> build/lib/galaxy/tools/bundled/interactive 2024-02-22T05:03:33,131 copying galaxy/tools/bundled/interactive/simtext_app.R -> build/lib/galaxy/tools/bundled/interactive 2024-02-22T05:03:33,134 creating build/lib/galaxy/tools/bundled/maf 2024-02-22T05:03:33,135 copying galaxy/tools/bundled/maf/__init__.py -> build/lib/galaxy/tools/bundled/maf 2024-02-22T05:03:33,137 copying galaxy/tools/bundled/maf/genebed_maf_to_fasta.xml -> build/lib/galaxy/tools/bundled/maf 2024-02-22T05:03:33,139 copying galaxy/tools/bundled/maf/interval2maf.py -> build/lib/galaxy/tools/bundled/maf 2024-02-22T05:03:33,142 copying galaxy/tools/bundled/maf/interval2maf.xml -> build/lib/galaxy/tools/bundled/maf 2024-02-22T05:03:33,145 copying galaxy/tools/bundled/maf/interval2maf_pairwise.xml -> build/lib/galaxy/tools/bundled/maf 2024-02-22T05:03:33,147 copying galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.py -> build/lib/galaxy/tools/bundled/maf 2024-02-22T05:03:33,150 copying galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.xml -> build/lib/galaxy/tools/bundled/maf 2024-02-22T05:03:33,152 copying galaxy/tools/bundled/maf/macros.xml -> build/lib/galaxy/tools/bundled/maf 2024-02-22T05:03:33,155 copying galaxy/tools/bundled/maf/maf_by_block_number.py -> build/lib/galaxy/tools/bundled/maf 2024-02-22T05:03:33,157 copying galaxy/tools/bundled/maf/maf_by_block_number.xml -> build/lib/galaxy/tools/bundled/maf 2024-02-22T05:03:33,159 copying galaxy/tools/bundled/maf/maf_filter.py -> build/lib/galaxy/tools/bundled/maf 2024-02-22T05:03:33,161 copying galaxy/tools/bundled/maf/maf_filter.xml -> build/lib/galaxy/tools/bundled/maf 2024-02-22T05:03:33,164 copying galaxy/tools/bundled/maf/maf_limit_size.py -> build/lib/galaxy/tools/bundled/maf 2024-02-22T05:03:33,166 copying galaxy/tools/bundled/maf/maf_limit_size.xml -> build/lib/galaxy/tools/bundled/maf 2024-02-22T05:03:33,168 copying galaxy/tools/bundled/maf/maf_limit_to_species.py -> build/lib/galaxy/tools/bundled/maf 2024-02-22T05:03:33,170 copying galaxy/tools/bundled/maf/maf_limit_to_species.xml -> build/lib/galaxy/tools/bundled/maf 2024-02-22T05:03:33,172 copying galaxy/tools/bundled/maf/maf_reverse_complement.py -> build/lib/galaxy/tools/bundled/maf 2024-02-22T05:03:33,174 copying galaxy/tools/bundled/maf/maf_reverse_complement.xml -> build/lib/galaxy/tools/bundled/maf 2024-02-22T05:03:33,176 copying galaxy/tools/bundled/maf/maf_split_by_species.py -> build/lib/galaxy/tools/bundled/maf 2024-02-22T05:03:33,178 copying galaxy/tools/bundled/maf/maf_split_by_species.xml -> build/lib/galaxy/tools/bundled/maf 2024-02-22T05:03:33,181 copying galaxy/tools/bundled/maf/maf_stats.py -> build/lib/galaxy/tools/bundled/maf 2024-02-22T05:03:33,184 copying galaxy/tools/bundled/maf/maf_stats.xml -> build/lib/galaxy/tools/bundled/maf 2024-02-22T05:03:33,186 copying galaxy/tools/bundled/maf/maf_thread_for_species.py -> build/lib/galaxy/tools/bundled/maf 2024-02-22T05:03:33,188 copying galaxy/tools/bundled/maf/maf_thread_for_species.xml -> build/lib/galaxy/tools/bundled/maf 2024-02-22T05:03:33,191 copying galaxy/tools/bundled/maf/maf_to_bed.py -> build/lib/galaxy/tools/bundled/maf 2024-02-22T05:03:33,193 copying galaxy/tools/bundled/maf/maf_to_bed.xml -> build/lib/galaxy/tools/bundled/maf 2024-02-22T05:03:33,196 copying galaxy/tools/bundled/maf/maf_to_bed_code.py -> build/lib/galaxy/tools/bundled/maf 2024-02-22T05:03:33,198 copying galaxy/tools/bundled/maf/maf_to_fasta.xml -> build/lib/galaxy/tools/bundled/maf 2024-02-22T05:03:33,201 copying galaxy/tools/bundled/maf/maf_to_fasta_concat.py -> build/lib/galaxy/tools/bundled/maf 2024-02-22T05:03:33,203 copying galaxy/tools/bundled/maf/maf_to_fasta_multiple_sets.py -> build/lib/galaxy/tools/bundled/maf 2024-02-22T05:03:33,205 copying galaxy/tools/bundled/maf/maf_to_interval.py -> build/lib/galaxy/tools/bundled/maf 2024-02-22T05:03:33,237 copying galaxy/tools/bundled/maf/maf_to_interval.xml -> build/lib/galaxy/tools/bundled/maf 2024-02-22T05:03:33,250 copying galaxy/tools/bundled/maf/vcf_to_maf_customtrack.py -> build/lib/galaxy/tools/bundled/maf 2024-02-22T05:03:33,255 copying galaxy/tools/bundled/maf/vcf_to_maf_customtrack.xml -> build/lib/galaxy/tools/bundled/maf 2024-02-22T05:03:33,348 creating build/lib/galaxy/tools/bundled/meme 2024-02-22T05:03:33,351 copying galaxy/tools/bundled/meme/__init__.py -> build/lib/galaxy/tools/bundled/meme 2024-02-22T05:03:33,377 copying galaxy/tools/bundled/meme/fimo.xml -> build/lib/galaxy/tools/bundled/meme 2024-02-22T05:03:33,386 copying galaxy/tools/bundled/meme/fimo_wrapper.py -> build/lib/galaxy/tools/bundled/meme 2024-02-22T05:03:33,402 copying galaxy/tools/bundled/meme/meme.xml -> build/lib/galaxy/tools/bundled/meme 2024-02-22T05:03:33,418 creating build/lib/galaxy/tools/bundled/metag_tools 2024-02-22T05:03:33,422 copying galaxy/tools/bundled/metag_tools/__init__.py -> build/lib/galaxy/tools/bundled/metag_tools 2024-02-22T05:03:33,435 copying galaxy/tools/bundled/metag_tools/blat_wrapper.py -> build/lib/galaxy/tools/bundled/metag_tools 2024-02-22T05:03:33,459 copying galaxy/tools/bundled/metag_tools/blat_wrapper.xml -> build/lib/galaxy/tools/bundled/metag_tools 2024-02-22T05:03:33,472 copying galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.py -> build/lib/galaxy/tools/bundled/metag_tools 2024-02-22T05:03:33,507 copying galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.xml -> build/lib/galaxy/tools/bundled/metag_tools 2024-02-22T05:03:33,543 copying galaxy/tools/bundled/metag_tools/shrimp_wrapper.py -> build/lib/galaxy/tools/bundled/metag_tools 2024-02-22T05:03:33,576 copying galaxy/tools/bundled/metag_tools/shrimp_wrapper.xml -> build/lib/galaxy/tools/bundled/metag_tools 2024-02-22T05:03:33,604 creating build/lib/galaxy/tools/bundled/next_gen_conversion 2024-02-22T05:03:33,606 copying galaxy/tools/bundled/next_gen_conversion/bwa_solid2fastq_modified.pl -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-02-22T05:03:33,610 copying galaxy/tools/bundled/next_gen_conversion/fastq_conversions.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-02-22T05:03:33,635 copying galaxy/tools/bundled/next_gen_conversion/fastq_conversions.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-02-22T05:03:33,646 copying galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-02-22T05:03:33,650 copying galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-02-22T05:03:33,658 copying galaxy/tools/bundled/next_gen_conversion/solid2fastq.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-02-22T05:03:33,667 copying galaxy/tools/bundled/next_gen_conversion/solid2fastq.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-02-22T05:03:33,680 copying galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-02-22T05:03:33,694 copying galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-02-22T05:03:33,705 creating build/lib/galaxy/tools/bundled/ngs_simulation 2024-02-22T05:03:33,707 copying galaxy/tools/bundled/ngs_simulation/__init__.py -> build/lib/galaxy/tools/bundled/ngs_simulation 2024-02-22T05:03:33,756 copying galaxy/tools/bundled/ngs_simulation/ngs_simulation.py -> build/lib/galaxy/tools/bundled/ngs_simulation 2024-02-22T05:03:33,786 copying galaxy/tools/bundled/ngs_simulation/ngs_simulation.xml -> build/lib/galaxy/tools/bundled/ngs_simulation 2024-02-22T05:03:33,794 creating build/lib/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:33,806 copying galaxy/tools/bundled/phenotype_association/BEAM2_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:33,818 copying galaxy/tools/bundled/phenotype_association/__init__.py -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:33,834 copying galaxy/tools/bundled/phenotype_association/beam.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:33,846 copying galaxy/tools/bundled/phenotype_association/gpass.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:33,855 copying galaxy/tools/bundled/phenotype_association/gpass.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:33,865 copying galaxy/tools/bundled/phenotype_association/ldtools.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:33,887 copying galaxy/tools/bundled/phenotype_association/ldtools_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:33,898 copying galaxy/tools/bundled/phenotype_association/linkToDavid.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:33,902 copying galaxy/tools/bundled/phenotype_association/linkToDavid.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:33,922 copying galaxy/tools/bundled/phenotype_association/linkToGProfile.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:33,950 copying galaxy/tools/bundled/phenotype_association/linkToGProfile.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:33,964 copying galaxy/tools/bundled/phenotype_association/lped_to_geno.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:33,986 copying galaxy/tools/bundled/phenotype_association/lps.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:34,013 copying galaxy/tools/bundled/phenotype_association/lps_tool_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:34,038 copying galaxy/tools/bundled/phenotype_association/master2gd_snp.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:34,050 copying galaxy/tools/bundled/phenotype_association/master2gd_snp.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:34,070 copying galaxy/tools/bundled/phenotype_association/master2pg.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:34,085 copying galaxy/tools/bundled/phenotype_association/master2pg.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:34,108 copying galaxy/tools/bundled/phenotype_association/mergeSnps.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:34,127 copying galaxy/tools/bundled/phenotype_association/pagetag.py -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:34,158 copying galaxy/tools/bundled/phenotype_association/pass.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:34,188 copying galaxy/tools/bundled/phenotype_association/pass_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:34,202 copying galaxy/tools/bundled/phenotype_association/senatag.py -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:34,226 copying galaxy/tools/bundled/phenotype_association/sift.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:34,239 copying galaxy/tools/bundled/phenotype_association/sift_variants_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:34,251 creating build/lib/galaxy/tools/bundled/plotting 2024-02-22T05:03:34,254 copying galaxy/tools/bundled/plotting/bar_chart.py -> build/lib/galaxy/tools/bundled/plotting 2024-02-22T05:03:34,265 copying galaxy/tools/bundled/plotting/bar_chart.xml -> build/lib/galaxy/tools/bundled/plotting 2024-02-22T05:03:34,269 copying galaxy/tools/bundled/plotting/boxplot.xml -> build/lib/galaxy/tools/bundled/plotting 2024-02-22T05:03:34,278 creating build/lib/galaxy/tools/bundled/solid_tools 2024-02-22T05:03:34,282 copying galaxy/tools/bundled/solid_tools/__init__.py -> build/lib/galaxy/tools/bundled/solid_tools 2024-02-22T05:03:34,289 copying galaxy/tools/bundled/solid_tools/maq_cs_wrapper.py -> build/lib/galaxy/tools/bundled/solid_tools 2024-02-22T05:03:34,300 copying galaxy/tools/bundled/solid_tools/maq_cs_wrapper.xml -> build/lib/galaxy/tools/bundled/solid_tools 2024-02-22T05:03:34,317 copying galaxy/tools/bundled/solid_tools/maq_cs_wrapper_code.py -> build/lib/galaxy/tools/bundled/solid_tools 2024-02-22T05:03:34,320 copying galaxy/tools/bundled/solid_tools/qualsolid_boxplot_graph.sh -> build/lib/galaxy/tools/bundled/solid_tools 2024-02-22T05:03:34,324 copying galaxy/tools/bundled/solid_tools/solid_qual_boxplot.xml -> build/lib/galaxy/tools/bundled/solid_tools 2024-02-22T05:03:34,328 copying galaxy/tools/bundled/solid_tools/solid_qual_stats.py -> build/lib/galaxy/tools/bundled/solid_tools 2024-02-22T05:03:34,342 copying galaxy/tools/bundled/solid_tools/solid_qual_stats.xml -> build/lib/galaxy/tools/bundled/solid_tools 2024-02-22T05:03:34,346 creating build/lib/galaxy/tools/bundled/sr_assembly 2024-02-22T05:03:34,348 copying galaxy/tools/bundled/sr_assembly/__init__.py -> build/lib/galaxy/tools/bundled/sr_assembly 2024-02-22T05:03:34,354 copying galaxy/tools/bundled/sr_assembly/velvetg.xml -> build/lib/galaxy/tools/bundled/sr_assembly 2024-02-22T05:03:34,370 copying galaxy/tools/bundled/sr_assembly/velvetg_wrapper.py -> build/lib/galaxy/tools/bundled/sr_assembly 2024-02-22T05:03:34,380 copying galaxy/tools/bundled/sr_assembly/velveth.xml -> build/lib/galaxy/tools/bundled/sr_assembly 2024-02-22T05:03:34,386 copying galaxy/tools/bundled/sr_assembly/velveth_wrapper.py -> build/lib/galaxy/tools/bundled/sr_assembly 2024-02-22T05:03:34,395 creating build/lib/galaxy/tools/bundled/sr_mapping 2024-02-22T05:03:34,397 copying galaxy/tools/bundled/sr_mapping/PerM.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2024-02-22T05:03:34,406 copying galaxy/tools/bundled/sr_mapping/__init__.py -> build/lib/galaxy/tools/bundled/sr_mapping 2024-02-22T05:03:34,415 copying galaxy/tools/bundled/sr_mapping/bfast_wrapper.py -> build/lib/galaxy/tools/bundled/sr_mapping 2024-02-22T05:03:34,420 copying galaxy/tools/bundled/sr_mapping/bfast_wrapper.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2024-02-22T05:03:34,439 copying galaxy/tools/bundled/sr_mapping/fastq_statistics.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2024-02-22T05:03:34,446 copying galaxy/tools/bundled/sr_mapping/mosaik.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2024-02-22T05:03:34,452 copying galaxy/tools/bundled/sr_mapping/srma_wrapper.py -> build/lib/galaxy/tools/bundled/sr_mapping 2024-02-22T05:03:34,467 copying galaxy/tools/bundled/sr_mapping/srma_wrapper.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2024-02-22T05:03:34,475 creating build/lib/galaxy/tools/bundled/stats 2024-02-22T05:03:34,478 copying galaxy/tools/bundled/stats/__init__.py -> build/lib/galaxy/tools/bundled/stats 2024-02-22T05:03:34,490 copying galaxy/tools/bundled/stats/aggregate_binned_scores_in_intervals.xml -> build/lib/galaxy/tools/bundled/stats 2024-02-22T05:03:34,496 copying galaxy/tools/bundled/stats/aggregate_scores_in_intervals.py -> build/lib/galaxy/tools/bundled/stats 2024-02-22T05:03:34,511 copying galaxy/tools/bundled/stats/filtering.py -> build/lib/galaxy/tools/bundled/stats 2024-02-22T05:03:34,522 copying galaxy/tools/bundled/stats/filtering.xml -> build/lib/galaxy/tools/bundled/stats 2024-02-22T05:03:34,530 copying galaxy/tools/bundled/stats/filtering_1_1_0.xml -> build/lib/galaxy/tools/bundled/stats 2024-02-22T05:03:34,537 copying galaxy/tools/bundled/stats/grouping.py -> build/lib/galaxy/tools/bundled/stats 2024-02-22T05:03:34,547 copying galaxy/tools/bundled/stats/grouping.xml -> build/lib/galaxy/tools/bundled/stats 2024-02-22T05:03:34,559 copying galaxy/tools/bundled/stats/gsummary.py -> build/lib/galaxy/tools/bundled/stats 2024-02-22T05:03:34,573 copying galaxy/tools/bundled/stats/gsummary.xml -> build/lib/galaxy/tools/bundled/stats 2024-02-22T05:03:34,577 copying galaxy/tools/bundled/stats/r_wrapper.sh -> build/lib/galaxy/tools/bundled/stats 2024-02-22T05:03:34,581 copying galaxy/managers/licenses.json -> build/lib/galaxy/managers 2024-02-22T05:03:34,599 copying galaxy/managers/markdown_export_base.css -> build/lib/galaxy/managers 2024-02-22T05:03:34,603 copying galaxy/dependencies/conditional-requirements.txt -> build/lib/galaxy/dependencies 2024-02-22T05:03:34,606 copying galaxy/dependencies/dev-requirements.txt -> build/lib/galaxy/dependencies 2024-02-22T05:03:34,621 copying galaxy/dependencies/lint-requirements.txt -> build/lib/galaxy/dependencies 2024-02-22T05:03:34,625 copying galaxy/dependencies/pinned-lint-requirements.txt -> build/lib/galaxy/dependencies 2024-02-22T05:03:34,628 copying galaxy/dependencies/pinned-requirements.txt -> build/lib/galaxy/dependencies 2024-02-22T05:03:34,633 copying galaxy/dependencies/pinned-typecheck-requirements.txt -> build/lib/galaxy/dependencies 2024-02-22T05:03:34,637 copying galaxy/dependencies/update.sh -> build/lib/galaxy/dependencies 2024-02-22T05:03:34,640 copying galaxy/dependencies/update_lint_requirements.sh -> build/lib/galaxy/dependencies 2024-02-22T05:03:34,649 copying galaxy/tools/imp_exp/exp_history_to_archive.xml -> build/lib/galaxy/tools/imp_exp 2024-02-22T05:03:34,653 copying galaxy/tools/imp_exp/exp_history_to_uri.xml -> build/lib/galaxy/tools/imp_exp 2024-02-22T05:03:34,656 copying galaxy/tools/imp_exp/imp_history_from_archive.xml -> build/lib/galaxy/tools/imp_exp 2024-02-22T05:03:34,660 copying galaxy/tools/expressions/cwlNodeEngine.js -> build/lib/galaxy/tools/expressions 2024-02-22T05:03:34,663 copying galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh -> build/lib/galaxy/jobs/runners/util/job_script 2024-02-22T05:03:34,667 copying galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh -> build/lib/galaxy/jobs/runners/util/job_script 2024-02-22T05:03:34,671 copying galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh -> build/lib/galaxy/jobs/runners/util/job_script 2024-02-22T05:03:34,674 copying galaxy/workflow/resources/example.py.sample -> build/lib/galaxy/workflow/resources 2024-02-22T05:03:34,746 installing to build/bdist.linux-armv7l/wheel 2024-02-22T05:03:34,747 running install 2024-02-22T05:03:34,782 running install_lib 2024-02-22T05:03:34,791 creating build/bdist.linux-armv7l 2024-02-22T05:03:34,792 creating build/bdist.linux-armv7l/wheel 2024-02-22T05:03:34,795 creating build/bdist.linux-armv7l/wheel/galaxy_ext 2024-02-22T05:03:34,797 creating build/bdist.linux-armv7l/wheel/galaxy_ext/container_monitor 2024-02-22T05:03:34,802 copying build/lib/galaxy_ext/container_monitor/monitor.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/container_monitor 2024-02-22T05:03:34,806 copying build/lib/galaxy_ext/container_monitor/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/container_monitor 2024-02-22T05:03:34,812 creating build/bdist.linux-armv7l/wheel/galaxy_ext/metadata 2024-02-22T05:03:34,813 copying build/lib/galaxy_ext/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/metadata 2024-02-22T05:03:34,816 copying build/lib/galaxy_ext/metadata/set_metadata.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/metadata 2024-02-22T05:03:34,819 copying build/lib/galaxy_ext/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy_ext 2024-02-22T05:03:34,823 creating build/bdist.linux-armv7l/wheel/galaxy_ext/expressions 2024-02-22T05:03:34,825 copying build/lib/galaxy_ext/expressions/handle_job.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/expressions 2024-02-22T05:03:34,827 copying build/lib/galaxy_ext/expressions/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/expressions 2024-02-22T05:03:34,829 copying build/lib/galaxy_ext/py.typed -> build/bdist.linux-armv7l/wheel/galaxy_ext 2024-02-22T05:03:34,833 creating build/bdist.linux-armv7l/wheel/galaxy 2024-02-22T05:03:34,834 copying build/lib/galaxy/app.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-02-22T05:03:34,842 creating build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-22T05:03:34,843 copying build/lib/galaxy/tools/sort_collection_list.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-22T05:03:34,846 copying build/lib/galaxy/tools/evaluation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-22T05:03:34,856 copying build/lib/galaxy/tools/relabel_from_file.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-22T05:03:34,860 copying build/lib/galaxy/tools/repositories.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-22T05:03:34,862 copying build/lib/galaxy/tools/recommendations.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-22T05:03:34,867 copying build/lib/galaxy/tools/unzip_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-22T05:03:34,871 creating build/bdist.linux-armv7l/wheel/galaxy/tools/filters 2024-02-22T05:03:34,872 copying build/lib/galaxy/tools/filters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/filters 2024-02-22T05:03:34,879 copying build/lib/galaxy/tools/special_tools.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-22T05:03:34,882 copying build/lib/galaxy/tools/data_fetch.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-22T05:03:34,886 copying build/lib/galaxy/tools/filter_from_file.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-22T05:03:34,889 copying build/lib/galaxy/tools/tag_collection_from_file.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-22T05:03:35,082 copying build/lib/galaxy/tools/zip_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-22T05:03:35,100 copying build/lib/galaxy/tools/apply_rules.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-22T05:03:35,108 creating build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2024-02-22T05:03:35,109 copying build/lib/galaxy/tools/imp_exp/unpack_tar_gz_archive.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2024-02-22T05:03:35,125 copying build/lib/galaxy/tools/imp_exp/exp_history_to_uri.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2024-02-22T05:03:35,131 copying build/lib/galaxy/tools/imp_exp/exp_history_to_archive.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2024-02-22T05:03:35,134 copying build/lib/galaxy/tools/imp_exp/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2024-02-22T05:03:35,137 copying build/lib/galaxy/tools/imp_exp/export_history.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2024-02-22T05:03:35,148 copying build/lib/galaxy/tools/imp_exp/imp_history_from_archive.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2024-02-22T05:03:35,151 creating build/bdist.linux-armv7l/wheel/galaxy/tools/search 2024-02-22T05:03:35,152 copying build/lib/galaxy/tools/search/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/search 2024-02-22T05:03:35,165 copying build/lib/galaxy/tools/execute.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-22T05:03:35,169 copying build/lib/galaxy/tools/biotools.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-22T05:03:35,172 copying build/lib/galaxy/tools/merge_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-22T05:03:35,175 copying build/lib/galaxy/tools/wrappers.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-22T05:03:35,185 copying build/lib/galaxy/tools/duplicate_file_to_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-22T05:03:35,189 copying build/lib/galaxy/tools/cache.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-22T05:03:35,195 copying build/lib/galaxy/tools/filter_failed_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-22T05:03:35,267 copying build/lib/galaxy/tools/data_fetch.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-22T05:03:35,274 copying build/lib/galaxy/tools/build_list.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-22T05:03:35,289 copying build/lib/galaxy/tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-22T05:03:35,310 creating build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports 2024-02-22T05:03:35,317 creating build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-02-22T05:03:35,319 copying build/lib/galaxy/tools/error_reports/plugins/email.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-02-22T05:03:35,330 copying build/lib/galaxy/tools/error_reports/plugins/influxdb.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-02-22T05:03:35,333 copying build/lib/galaxy/tools/error_reports/plugins/slack.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-02-22T05:03:35,349 copying build/lib/galaxy/tools/error_reports/plugins/sentry.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-02-22T05:03:35,356 copying build/lib/galaxy/tools/error_reports/plugins/github.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-02-22T05:03:35,359 copying build/lib/galaxy/tools/error_reports/plugins/gitlab.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-02-22T05:03:35,369 copying build/lib/galaxy/tools/error_reports/plugins/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-02-22T05:03:35,377 copying build/lib/galaxy/tools/error_reports/plugins/json.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-02-22T05:03:35,383 copying build/lib/galaxy/tools/error_reports/plugins/base_git.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-02-22T05:03:35,393 copying build/lib/galaxy/tools/error_reports/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports 2024-02-22T05:03:35,400 creating build/bdist.linux-armv7l/wheel/galaxy/tools/expressions 2024-02-22T05:03:35,401 copying build/lib/galaxy/tools/expressions/evaluation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions 2024-02-22T05:03:35,404 copying build/lib/galaxy/tools/expressions/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions 2024-02-22T05:03:35,407 copying build/lib/galaxy/tools/expressions/script.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions 2024-02-22T05:03:35,417 copying build/lib/galaxy/tools/expressions/cwlNodeEngine.js -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions 2024-02-22T05:03:35,423 copying build/lib/galaxy/tools/expressions/util.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions 2024-02-22T05:03:35,426 copying build/lib/galaxy/tools/errors.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-22T05:03:35,442 copying build/lib/galaxy/tools/flatten_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-22T05:03:35,450 creating build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-02-22T05:03:35,451 copying build/lib/galaxy/tools/actions/upload.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-02-22T05:03:35,454 copying build/lib/galaxy/tools/actions/data_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-02-22T05:03:35,461 copying build/lib/galaxy/tools/actions/upload_common.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-02-22T05:03:35,468 copying build/lib/galaxy/tools/actions/data_source.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-02-22T05:03:35,471 copying build/lib/galaxy/tools/actions/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-02-22T05:03:35,482 copying build/lib/galaxy/tools/actions/model_operations.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-02-22T05:03:35,486 copying build/lib/galaxy/tools/actions/history_imp_exp.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-02-22T05:03:35,489 copying build/lib/galaxy/tools/actions/metadata.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-02-22T05:03:35,493 creating build/bdist.linux-armv7l/wheel/galaxy/tools/data_manager 2024-02-22T05:03:35,498 copying build/lib/galaxy/tools/data_manager/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/data_manager 2024-02-22T05:03:35,505 copying build/lib/galaxy/tools/data_manager/manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/data_manager 2024-02-22T05:03:35,510 copying build/lib/galaxy/tools/remote_tool_eval.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-22T05:03:35,517 copying build/lib/galaxy/tools/exception_handling.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-22T05:03:35,523 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled 2024-02-22T05:03:35,531 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-02-22T05:03:35,533 copying build/lib/galaxy/tools/bundled/sr_mapping/mosaik.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-02-22T05:03:35,543 copying build/lib/galaxy/tools/bundled/sr_mapping/bfast_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-02-22T05:03:35,554 copying build/lib/galaxy/tools/bundled/sr_mapping/srma_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-02-22T05:03:35,563 copying build/lib/galaxy/tools/bundled/sr_mapping/srma_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-02-22T05:03:35,568 copying build/lib/galaxy/tools/bundled/sr_mapping/fastq_statistics.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-02-22T05:03:35,572 copying build/lib/galaxy/tools/bundled/sr_mapping/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-02-22T05:03:35,575 copying build/lib/galaxy/tools/bundled/sr_mapping/PerM.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-02-22T05:03:35,587 copying build/lib/galaxy/tools/bundled/sr_mapping/bfast_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-02-22T05:03:35,594 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2024-02-22T05:03:35,598 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2024-02-22T05:03:35,607 copying build/lib/galaxy/tools/bundled/metag_tools/blat_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2024-02-22T05:03:35,610 copying build/lib/galaxy/tools/bundled/metag_tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2024-02-22T05:03:35,613 copying build/lib/galaxy/tools/bundled/metag_tools/blat_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2024-02-22T05:03:35,616 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2024-02-22T05:03:35,623 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2024-02-22T05:03:35,638 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2024-02-22T05:03:35,651 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,652 copying build/lib/galaxy/tools/bundled/filters/wiggle_to_simple.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,662 copying build/lib/galaxy/tools/bundled/filters/CreateInterval.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,665 copying build/lib/galaxy/tools/bundled/filters/remove_beginning.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,669 copying build/lib/galaxy/tools/bundled/filters/mergeCols.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,672 copying build/lib/galaxy/tools/bundled/filters/bed_to_bigbed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,675 copying build/lib/galaxy/tools/bundled/filters/catWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,678 copying build/lib/galaxy/tools/bundled/filters/commWrapper.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,684 copying build/lib/galaxy/tools/bundled/filters/secure_hash_message_digest.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,695 copying build/lib/galaxy/tools/bundled/filters/trimmer.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,702 copying build/lib/galaxy/tools/bundled/filters/wc_gnu.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,707 copying build/lib/galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,715 copying build/lib/galaxy/tools/bundled/filters/convert_characters.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,723 copying build/lib/galaxy/tools/bundled/filters/mergeCols.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,726 copying build/lib/galaxy/tools/bundled/filters/compare.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,730 copying build/lib/galaxy/tools/bundled/filters/grep.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,734 copying build/lib/galaxy/tools/bundled/filters/axt_to_concat_fasta.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,739 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,751 copying build/lib/galaxy/tools/bundled/filters/randomlines.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,755 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,758 copying build/lib/galaxy/tools/bundled/filters/secure_hash_message_digest.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,761 copying build/lib/galaxy/tools/bundled/filters/joiner2.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,764 copying build/lib/galaxy/tools/bundled/filters/changeCase.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,770 copying build/lib/galaxy/tools/bundled/filters/tailWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,774 copying build/lib/galaxy/tools/bundled/filters/fixedValueColumn.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,777 copying build/lib/galaxy/tools/bundled/filters/joinWrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,781 copying build/lib/galaxy/tools/bundled/filters/wig_to_bigwig.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,792 copying build/lib/galaxy/tools/bundled/filters/changeCase.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,795 copying build/lib/galaxy/tools/bundled/filters/axt_to_lav.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,799 copying build/lib/galaxy/tools/bundled/filters/remove_beginning.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,802 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,806 copying build/lib/galaxy/tools/bundled/filters/axt_to_lav.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,820 copying build/lib/galaxy/tools/bundled/filters/CreateInterval.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,823 copying build/lib/galaxy/tools/bundled/filters/uniq.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,827 copying build/lib/galaxy/tools/bundled/filters/gtf2bedgraph.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,830 copying build/lib/galaxy/tools/bundled/filters/axt_to_lav_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,837 copying build/lib/galaxy/tools/bundled/filters/condense_characters.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,841 copying build/lib/galaxy/tools/bundled/filters/join.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,845 copying build/lib/galaxy/tools/bundled/filters/uniq.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,854 copying build/lib/galaxy/tools/bundled/filters/gff2bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,857 copying build/lib/galaxy/tools/bundled/filters/random_lines_two_pass.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,864 copying build/lib/galaxy/tools/bundled/filters/pasteWrapper.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,868 copying build/lib/galaxy/tools/bundled/filters/pasteWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,875 copying build/lib/galaxy/tools/bundled/filters/catWrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,878 copying build/lib/galaxy/tools/bundled/filters/cutWrapper.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,885 copying build/lib/galaxy/tools/bundled/filters/commWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,889 copying build/lib/galaxy/tools/bundled/filters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,892 copying build/lib/galaxy/tools/bundled/filters/convert_characters.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,896 copying build/lib/galaxy/tools/bundled/filters/bed_to_gff_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,899 copying build/lib/galaxy/tools/bundled/filters/sorter.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,903 copying build/lib/galaxy/tools/bundled/filters/bed2gff.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,907 copying build/lib/galaxy/tools/bundled/filters/joiner.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,911 copying build/lib/galaxy/tools/bundled/filters/sorter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,915 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,918 copying build/lib/galaxy/tools/bundled/filters/lav_to_bed_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,921 copying build/lib/galaxy/tools/bundled/filters/headWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,923 copying build/lib/galaxy/tools/bundled/filters/randomlines.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,926 copying build/lib/galaxy/tools/bundled/filters/axt_to_concat_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,930 copying build/lib/galaxy/tools/bundled/filters/lav_to_bed.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,933 copying build/lib/galaxy/tools/bundled/filters/sff_extractor.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,939 copying build/lib/galaxy/tools/bundled/filters/axt_to_fasta.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,943 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,946 copying build/lib/galaxy/tools/bundled/filters/sff_extract.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,952 copying build/lib/galaxy/tools/bundled/filters/lav_to_bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,956 copying build/lib/galaxy/tools/bundled/filters/condense_characters.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,959 copying build/lib/galaxy/tools/bundled/filters/wiggle_to_simple.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,962 copying build/lib/galaxy/tools/bundled/filters/axt_to_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,971 copying build/lib/galaxy/tools/bundled/filters/trimmer.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,975 copying build/lib/galaxy/tools/bundled/filters/cutWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,982 copying build/lib/galaxy/tools/bundled/filters/gff_to_bed_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,986 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:35,997 copying build/lib/galaxy/tools/bundled/filters/fileGrep.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:36,001 copying build/lib/galaxy/tools/bundled/filters/fixedValueColumn.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:36,004 copying build/lib/galaxy/tools/bundled/filters/grep_1.0.1.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:36,009 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-02-22T05:03:36,010 copying build/lib/galaxy/tools/bundled/filters/gff/extract_GFF_Features.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-02-22T05:03:36,017 copying build/lib/galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-02-22T05:03:36,021 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-02-22T05:03:36,024 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-02-22T05:03:36,031 copying build/lib/galaxy/tools/bundled/filters/gff/extract_GFF_Features.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-02-22T05:03:36,034 copying build/lib/galaxy/tools/bundled/filters/gff/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-02-22T05:03:36,043 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-02-22T05:03:36,048 copying build/lib/galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-02-22T05:03:36,053 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-02-22T05:03:36,056 copying build/lib/galaxy/tools/bundled/filters/grep.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-02-22T05:03:36,062 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-22T05:03:36,063 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_neo4j.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-22T05:03:36,067 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.0.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-22T05:03:36,071 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_vrm_editor.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-22T05:03:36,075 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_climate_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-22T05:03:36,080 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_geoexplorer.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-22T05:03:36,084 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_isee.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-22T05:03:36,088 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_bam_iobio.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-22T05:03:36,095 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_paraview.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-22T05:03:36,098 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_radiant.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-22T05:03:36,101 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_higlass.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-22T05:03:36,105 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_rstudio.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-22T05:03:36,111 copying build/lib/galaxy/tools/bundled/interactive/default_notebook.ipynb -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-22T05:03:36,118 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_panoply.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-22T05:03:36,121 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_mgnify_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-22T05:03:36,125 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pavian.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-22T05:03:36,130 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_vcf_iobio.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-22T05:03:36,134 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_wilson.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-22T05:03:36,137 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_guacamole_desktop.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-22T05:03:36,146 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_ml_jupyter_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-22T05:03:36,151 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_askomics.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-22T05:03:36,154 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-22T05:03:36,159 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_wallace.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-22T05:03:36,162 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_cellxgene_1.1.1.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-22T05:03:36,167 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_phinch.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-22T05:03:36,171 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pangeo_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-22T05:03:36,179 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_simtext_app.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-22T05:03:36,183 copying build/lib/galaxy/tools/bundled/interactive/simtext_app.R -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-22T05:03:36,188 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_ethercalc.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-22T05:03:36,192 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_metashark.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-22T05:03:36,196 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_hicbrowser.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-22T05:03:36,200 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_cellxgene_0.16.2.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-22T05:03:36,207 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_openrefine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-22T05:03:36,222 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pyiron.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-02-22T05:03:36,227 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract 2024-02-22T05:03:36,229 copying build/lib/galaxy/tools/bundled/extract/extract_genomic_dna.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract 2024-02-22T05:03:36,234 copying build/lib/galaxy/tools/bundled/extract/liftOver_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract 2024-02-22T05:03:36,238 copying build/lib/galaxy/tools/bundled/extract/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract 2024-02-22T05:03:36,241 copying build/lib/galaxy/tools/bundled/extract/liftOver_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract 2024-02-22T05:03:36,246 copying build/lib/galaxy/tools/bundled/extract/extract_genomic_dna.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract 2024-02-22T05:03:36,250 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/ngs_simulation 2024-02-22T05:03:36,252 copying build/lib/galaxy/tools/bundled/ngs_simulation/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/ngs_simulation 2024-02-22T05:03:36,255 copying build/lib/galaxy/tools/bundled/ngs_simulation/ngs_simulation.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/ngs_simulation 2024-02-22T05:03:36,259 copying build/lib/galaxy/tools/bundled/ngs_simulation/ngs_simulation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/ngs_simulation 2024-02-22T05:03:36,266 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/expression_tools 2024-02-22T05:03:36,268 copying build/lib/galaxy/tools/bundled/expression_tools/expression_macros.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/expression_tools 2024-02-22T05:03:36,273 copying build/lib/galaxy/tools/bundled/expression_tools/pick_value.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/expression_tools 2024-02-22T05:03:36,277 copying build/lib/galaxy/tools/bundled/expression_tools/parse_values_from_file.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/expression_tools 2024-02-22T05:03:36,281 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-02-22T05:03:36,283 copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_boxplot.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-02-22T05:03:36,293 copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_stats.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-02-22T05:03:36,298 copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_stats.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-02-22T05:03:36,301 copying build/lib/galaxy/tools/bundled/solid_tools/qualsolid_boxplot_graph.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-02-22T05:03:36,304 copying build/lib/galaxy/tools/bundled/solid_tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-02-22T05:03:36,307 copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-02-22T05:03:36,311 copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-02-22T05:03:36,315 copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-02-22T05:03:36,319 copying build/lib/galaxy/tools/bundled/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled 2024-02-22T05:03:36,326 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-02-22T05:03:36,328 copying build/lib/galaxy/tools/bundled/stats/aggregate_binned_scores_in_intervals.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-02-22T05:03:36,333 copying build/lib/galaxy/tools/bundled/stats/gsummary.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-02-22T05:03:36,337 copying build/lib/galaxy/tools/bundled/stats/filtering.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-02-22T05:03:36,341 copying build/lib/galaxy/tools/bundled/stats/r_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-02-22T05:03:36,344 copying build/lib/galaxy/tools/bundled/stats/grouping.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-02-22T05:03:36,352 copying build/lib/galaxy/tools/bundled/stats/grouping.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-02-22T05:03:36,356 copying build/lib/galaxy/tools/bundled/stats/filtering.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-02-22T05:03:36,362 copying build/lib/galaxy/tools/bundled/stats/filtering_1_1_0.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-02-22T05:03:36,366 copying build/lib/galaxy/tools/bundled/stats/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-02-22T05:03:36,369 copying build/lib/galaxy/tools/bundled/stats/aggregate_scores_in_intervals.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-02-22T05:03:36,375 copying build/lib/galaxy/tools/bundled/stats/gsummary.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-02-22T05:03:36,384 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-22T05:03:36,385 copying build/lib/galaxy/tools/bundled/data_source/gramene_mart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-22T05:03:36,390 copying build/lib/galaxy/tools/bundled/data_source/flymine_test.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-22T05:03:36,393 copying build/lib/galaxy/tools/bundled/data_source/ebi_sra.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-22T05:03:36,397 copying build/lib/galaxy/tools/bundled/data_source/mousemine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-22T05:03:36,401 copying build/lib/galaxy/tools/bundled/data_source/upload.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-22T05:03:36,405 copying build/lib/galaxy/tools/bundled/data_source/sra.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-22T05:03:36,409 copying build/lib/galaxy/tools/bundled/data_source/genbank.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-22T05:03:36,413 copying build/lib/galaxy/tools/bundled/data_source/access_libraries.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-22T05:03:36,421 copying build/lib/galaxy/tools/bundled/data_source/import.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-22T05:03:36,428 copying build/lib/galaxy/tools/bundled/data_source/data_source.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-22T05:03:36,432 copying build/lib/galaxy/tools/bundled/data_source/flymine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-22T05:03:36,436 copying build/lib/galaxy/tools/bundled/data_source/genbank.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-22T05:03:36,439 copying build/lib/galaxy/tools/bundled/data_source/cbi_rice_mart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-22T05:03:36,444 copying build/lib/galaxy/tools/bundled/data_source/upload.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-22T05:03:36,449 copying build/lib/galaxy/tools/bundled/data_source/ratmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-22T05:03:36,452 copying build/lib/galaxy/tools/bundled/data_source/yeastmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-22T05:03:36,455 copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-22T05:03:36,458 copying build/lib/galaxy/tools/bundled/data_source/metabolicmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-22T05:03:36,461 copying build/lib/galaxy/tools/bundled/data_source/modmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-22T05:03:36,464 copying build/lib/galaxy/tools/bundled/data_source/ncbi_datasets.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-22T05:03:36,467 copying build/lib/galaxy/tools/bundled/data_source/hapmapmart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-22T05:03:36,470 copying build/lib/galaxy/tools/bundled/data_source/import.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-22T05:03:36,474 copying build/lib/galaxy/tools/bundled/data_source/zebrafishmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-22T05:03:36,477 copying build/lib/galaxy/tools/bundled/data_source/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-22T05:03:36,480 copying build/lib/galaxy/tools/bundled/data_source/wormbase.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-22T05:03:36,487 copying build/lib/galaxy/tools/bundled/data_source/microbial_import.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-22T05:03:36,490 copying build/lib/galaxy/tools/bundled/data_source/intermine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-22T05:03:36,493 copying build/lib/galaxy/tools/bundled/data_source/microbial_import.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-22T05:03:36,497 copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-22T05:03:36,500 copying build/lib/galaxy/tools/bundled/data_source/microbial_import_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-22T05:03:36,505 copying build/lib/galaxy/tools/bundled/data_source/fly_modencode.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-22T05:03:36,508 copying build/lib/galaxy/tools/bundled/data_source/biomart_test.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-22T05:03:36,513 copying build/lib/galaxy/tools/bundled/data_source/biomart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-22T05:03:36,517 copying build/lib/galaxy/tools/bundled/data_source/wormbase_test.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-22T05:03:36,525 copying build/lib/galaxy/tools/bundled/data_source/worm_modencode.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-22T05:03:36,529 copying build/lib/galaxy/tools/bundled/data_source/hbvar.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-22T05:03:36,532 copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-22T05:03:36,541 copying build/lib/galaxy/tools/bundled/data_source/eupathdb.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-02-22T05:03:36,546 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-22T05:03:36,547 copying build/lib/galaxy/tools/bundled/maf/maf_split_by_species.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-22T05:03:36,553 copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta_concat.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-22T05:03:36,557 copying build/lib/galaxy/tools/bundled/maf/maf_split_by_species.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-22T05:03:36,562 copying build/lib/galaxy/tools/bundled/maf/maf_filter.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-22T05:03:36,566 copying build/lib/galaxy/tools/bundled/maf/maf_to_bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-22T05:03:36,571 copying build/lib/galaxy/tools/bundled/maf/maf_by_block_number.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-22T05:03:36,574 copying build/lib/galaxy/tools/bundled/maf/maf_thread_for_species.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-22T05:03:36,584 copying build/lib/galaxy/tools/bundled/maf/vcf_to_maf_customtrack.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-22T05:03:36,588 copying build/lib/galaxy/tools/bundled/maf/maf_limit_size.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-22T05:03:36,591 copying build/lib/galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-22T05:03:36,595 copying build/lib/galaxy/tools/bundled/maf/maf_stats.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-22T05:03:36,598 copying build/lib/galaxy/tools/bundled/maf/maf_to_interval.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-22T05:03:36,602 copying build/lib/galaxy/tools/bundled/maf/maf_limit_to_species.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-22T05:03:36,606 copying build/lib/galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-22T05:03:36,613 copying build/lib/galaxy/tools/bundled/maf/maf_to_bed_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-22T05:03:36,617 copying build/lib/galaxy/tools/bundled/maf/maf_reverse_complement.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-22T05:03:36,620 copying build/lib/galaxy/tools/bundled/maf/maf_reverse_complement.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-22T05:03:36,624 copying build/lib/galaxy/tools/bundled/maf/macros.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-22T05:03:36,628 copying build/lib/galaxy/tools/bundled/maf/maf_filter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-22T05:03:36,631 copying build/lib/galaxy/tools/bundled/maf/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-22T05:03:36,634 copying build/lib/galaxy/tools/bundled/maf/interval2maf_pairwise.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-22T05:03:36,637 copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-22T05:03:36,642 copying build/lib/galaxy/tools/bundled/maf/maf_to_bed.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-22T05:03:36,645 copying build/lib/galaxy/tools/bundled/maf/maf_limit_to_species.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-22T05:03:36,648 copying build/lib/galaxy/tools/bundled/maf/maf_by_block_number.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-22T05:03:36,652 copying build/lib/galaxy/tools/bundled/maf/maf_limit_size.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-22T05:03:36,656 copying build/lib/galaxy/tools/bundled/maf/vcf_to_maf_customtrack.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-22T05:03:36,661 copying build/lib/galaxy/tools/bundled/maf/maf_stats.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-22T05:03:36,666 copying build/lib/galaxy/tools/bundled/maf/maf_thread_for_species.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-22T05:03:36,670 copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta_multiple_sets.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-22T05:03:36,674 copying build/lib/galaxy/tools/bundled/maf/interval2maf.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-22T05:03:36,678 copying build/lib/galaxy/tools/bundled/maf/interval2maf.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-22T05:03:36,683 copying build/lib/galaxy/tools/bundled/maf/maf_to_interval.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-22T05:03:36,687 copying build/lib/galaxy/tools/bundled/maf/genebed_maf_to_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-02-22T05:03:36,693 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly 2024-02-22T05:03:36,694 copying build/lib/galaxy/tools/bundled/sr_assembly/velveth.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly 2024-02-22T05:03:36,698 copying build/lib/galaxy/tools/bundled/sr_assembly/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly 2024-02-22T05:03:36,702 copying build/lib/galaxy/tools/bundled/sr_assembly/velvetg_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly 2024-02-22T05:03:36,706 copying build/lib/galaxy/tools/bundled/sr_assembly/velveth_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly 2024-02-22T05:03:36,711 copying build/lib/galaxy/tools/bundled/sr_assembly/velvetg.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly 2024-02-22T05:03:36,717 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme 2024-02-22T05:03:36,719 copying build/lib/galaxy/tools/bundled/meme/fimo.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme 2024-02-22T05:03:36,731 copying build/lib/galaxy/tools/bundled/meme/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme 2024-02-22T05:03:36,734 copying build/lib/galaxy/tools/bundled/meme/fimo_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme 2024-02-22T05:03:36,738 copying build/lib/galaxy/tools/bundled/meme/meme.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme 2024-02-22T05:03:36,751 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/plotting 2024-02-22T05:03:36,752 copying build/lib/galaxy/tools/bundled/plotting/bar_chart.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/plotting 2024-02-22T05:03:36,756 copying build/lib/galaxy/tools/bundled/plotting/bar_chart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/plotting 2024-02-22T05:03:36,760 copying build/lib/galaxy/tools/bundled/plotting/boxplot.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/plotting 2024-02-22T05:03:36,765 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:36,766 copying build/lib/galaxy/tools/bundled/phenotype_association/gpass.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:36,771 copying build/lib/galaxy/tools/bundled/phenotype_association/master2pg.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:36,774 copying build/lib/galaxy/tools/bundled/phenotype_association/sift.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:36,777 copying build/lib/galaxy/tools/bundled/phenotype_association/lps_tool_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:36,780 copying build/lib/galaxy/tools/bundled/phenotype_association/BEAM2_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:36,783 copying build/lib/galaxy/tools/bundled/phenotype_association/pass_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:36,786 copying build/lib/galaxy/tools/bundled/phenotype_association/lped_to_geno.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:36,789 copying build/lib/galaxy/tools/bundled/phenotype_association/ldtools.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:36,793 copying build/lib/galaxy/tools/bundled/phenotype_association/pass.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:36,796 copying build/lib/galaxy/tools/bundled/phenotype_association/master2gd_snp.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:36,800 copying build/lib/galaxy/tools/bundled/phenotype_association/mergeSnps.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:36,802 copying build/lib/galaxy/tools/bundled/phenotype_association/lps.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:36,806 copying build/lib/galaxy/tools/bundled/phenotype_association/master2pg.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:36,810 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToGProfile.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:36,813 copying build/lib/galaxy/tools/bundled/phenotype_association/ldtools_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:36,820 copying build/lib/galaxy/tools/bundled/phenotype_association/senatag.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:36,824 copying build/lib/galaxy/tools/bundled/phenotype_association/sift_variants_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:36,828 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToDavid.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:36,831 copying build/lib/galaxy/tools/bundled/phenotype_association/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:36,833 copying build/lib/galaxy/tools/bundled/phenotype_association/beam.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:36,837 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToGProfile.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:36,839 copying build/lib/galaxy/tools/bundled/phenotype_association/master2gd_snp.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:36,842 copying build/lib/galaxy/tools/bundled/phenotype_association/pagetag.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:36,846 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToDavid.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:36,850 copying build/lib/galaxy/tools/bundled/phenotype_association/gpass.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-02-22T05:03:36,854 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-02-22T05:03:36,855 copying build/lib/galaxy/tools/bundled/next_gen_conversion/bwa_solid2fastq_modified.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-02-22T05:03:36,859 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_conversions.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-02-22T05:03:36,862 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-02-22T05:03:36,866 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-02-22T05:03:36,869 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_conversions.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-02-22T05:03:36,872 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-02-22T05:03:36,876 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid2fastq.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-02-22T05:03:36,880 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-02-22T05:03:36,882 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid2fastq.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-02-22T05:03:36,886 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export 2024-02-22T05:03:36,888 copying build/lib/galaxy/tools/bundled/data_export/send.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export 2024-02-22T05:03:36,891 copying build/lib/galaxy/tools/bundled/data_export/send.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export 2024-02-22T05:03:36,895 copying build/lib/galaxy/tools/bundled/data_export/export_remote.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export 2024-02-22T05:03:36,898 copying build/lib/galaxy/tools/bundled/data_export/export_remote.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export 2024-02-22T05:03:36,902 copying build/lib/galaxy/tools/test.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-22T05:03:36,906 creating build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-02-22T05:03:36,910 copying build/lib/galaxy/tools/parameters/basic.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-02-22T05:03:36,916 copying build/lib/galaxy/tools/parameters/wrapped_json.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-02-22T05:03:36,919 copying build/lib/galaxy/tools/parameters/validation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-02-22T05:03:36,925 copying build/lib/galaxy/tools/parameters/grouping.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-02-22T05:03:36,929 copying build/lib/galaxy/tools/parameters/sanitize.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-02-22T05:03:36,932 copying build/lib/galaxy/tools/parameters/history_query.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-02-22T05:03:36,935 copying build/lib/galaxy/tools/parameters/meta.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-02-22T05:03:36,938 copying build/lib/galaxy/tools/parameters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-02-22T05:03:36,941 copying build/lib/galaxy/tools/parameters/input_translation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-02-22T05:03:36,944 copying build/lib/galaxy/tools/parameters/dynamic_options.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-02-22T05:03:36,948 copying build/lib/galaxy/tools/parameters/dataset_matcher.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-02-22T05:03:36,951 copying build/lib/galaxy/tools/parameters/wrapped.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-02-22T05:03:36,954 copying build/lib/galaxy/tools/build_list_1.2.0.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-22T05:03:36,958 creating build/bdist.linux-armv7l/wheel/galaxy/tools/util 2024-02-22T05:03:36,959 copying build/lib/galaxy/tools/util/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/util 2024-02-22T05:03:36,962 creating build/bdist.linux-armv7l/wheel/galaxy/tools/util/galaxyops 2024-02-22T05:03:36,963 copying build/lib/galaxy/tools/util/galaxyops/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/util/galaxyops 2024-02-22T05:03:36,966 copying build/lib/galaxy/tools/util/maf_utilities.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/util 2024-02-22T05:03:36,970 copying build/lib/galaxy/tools/filter_empty_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-22T05:03:36,972 copying build/lib/galaxy/tools/extract_dataset.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-02-22T05:03:36,975 creating build/bdist.linux-armv7l/wheel/galaxy/tools/data 2024-02-22T05:03:36,976 copying build/lib/galaxy/tools/data/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/data 2024-02-22T05:03:36,983 creating build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils 2024-02-22T05:03:36,984 copying build/lib/galaxy/app_unittest_utils/toolbox_support.py -> build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils 2024-02-22T05:03:36,987 copying build/lib/galaxy/app_unittest_utils/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils 2024-02-22T05:03:36,989 copying build/lib/galaxy/app_unittest_utils/galaxy_mock.py -> build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils 2024-02-22T05:03:36,992 copying build/lib/galaxy/app_unittest_utils/tools_support.py -> build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils 2024-02-22T05:03:36,996 creating build/bdist.linux-armv7l/wheel/galaxy/celery 2024-02-22T05:03:36,997 copying build/lib/galaxy/celery/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/celery 2024-02-22T05:03:37,001 copying build/lib/galaxy/celery/tasks.py -> build/bdist.linux-armv7l/wheel/galaxy/celery 2024-02-22T05:03:37,004 copying build/lib/galaxy/celery/base_task.py -> build/bdist.linux-armv7l/wheel/galaxy/celery 2024-02-22T05:03:37,008 copying build/lib/galaxy/celery/_serialization.py -> build/bdist.linux-armv7l/wheel/galaxy/celery 2024-02-22T05:03:37,011 copying build/lib/galaxy/di.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-02-22T05:03:37,014 creating build/bdist.linux-armv7l/wheel/galaxy/visualization 2024-02-22T05:03:37,017 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/genome 2024-02-22T05:03:37,018 copying build/lib/galaxy/visualization/genome/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/genome 2024-02-22T05:03:37,022 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2024-02-22T05:03:37,023 copying build/lib/galaxy/visualization/plugins/plugin.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2024-02-22T05:03:37,027 copying build/lib/galaxy/visualization/plugins/config_parser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2024-02-22T05:03:37,030 copying build/lib/galaxy/visualization/plugins/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2024-02-22T05:03:37,033 copying build/lib/galaxy/visualization/plugins/registry.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2024-02-22T05:03:37,037 copying build/lib/galaxy/visualization/plugins/utils.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2024-02-22T05:03:37,040 copying build/lib/galaxy/visualization/plugins/resource_parser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2024-02-22T05:03:37,043 copying build/lib/galaxy/visualization/genomes.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization 2024-02-22T05:03:37,047 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers 2024-02-22T05:03:37,049 copying build/lib/galaxy/visualization/data_providers/basic.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers 2024-02-22T05:03:37,052 copying build/lib/galaxy/visualization/data_providers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers 2024-02-22T05:03:37,055 copying build/lib/galaxy/visualization/data_providers/registry.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers 2024-02-22T05:03:37,058 copying build/lib/galaxy/visualization/data_providers/cigar.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers 2024-02-22T05:03:37,062 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz 2024-02-22T05:03:37,063 copying build/lib/galaxy/visualization/data_providers/phyloviz/phyloxmlparser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz 2024-02-22T05:03:37,067 copying build/lib/galaxy/visualization/data_providers/phyloviz/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz 2024-02-22T05:03:37,069 copying build/lib/galaxy/visualization/data_providers/phyloviz/baseparser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz 2024-02-22T05:03:37,073 copying build/lib/galaxy/visualization/data_providers/phyloviz/nexusparser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz 2024-02-22T05:03:37,076 copying build/lib/galaxy/visualization/data_providers/phyloviz/newickparser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz 2024-02-22T05:03:37,079 copying build/lib/galaxy/visualization/data_providers/genome.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers 2024-02-22T05:03:37,084 copying build/lib/galaxy/visualization/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization 2024-02-22T05:03:37,087 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/tracks 2024-02-22T05:03:37,088 copying build/lib/galaxy/visualization/tracks/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/tracks 2024-02-22T05:03:37,092 creating build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-02-22T05:03:37,094 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-02-22T05:03:37,096 copying build/lib/galaxy/jobs/runners/chronos.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-02-22T05:03:37,100 copying build/lib/galaxy/jobs/runners/local.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-02-22T05:03:37,103 copying build/lib/galaxy/jobs/runners/univa.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-02-22T05:03:37,107 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/state_handlers 2024-02-22T05:03:37,108 copying build/lib/galaxy/jobs/runners/state_handlers/_safe_eval.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/state_handlers 2024-02-22T05:03:37,112 copying build/lib/galaxy/jobs/runners/state_handlers/resubmit.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/state_handlers 2024-02-22T05:03:37,115 copying build/lib/galaxy/jobs/runners/state_handlers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/state_handlers 2024-02-22T05:03:37,118 copying build/lib/galaxy/jobs/runners/state_handler_factory.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-02-22T05:03:37,121 copying build/lib/galaxy/jobs/runners/godocker.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-02-22T05:03:37,125 copying build/lib/galaxy/jobs/runners/condor.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-02-22T05:03:37,128 copying build/lib/galaxy/jobs/runners/slurm.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-02-22T05:03:37,132 copying build/lib/galaxy/jobs/runners/drmaa.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-02-22T05:03:37,135 copying build/lib/galaxy/jobs/runners/aws.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-02-22T05:03:37,139 copying build/lib/galaxy/jobs/runners/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-02-22T05:03:37,143 copying build/lib/galaxy/jobs/runners/tasks.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-02-22T05:03:37,147 copying build/lib/galaxy/jobs/runners/pulsar.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-02-22T05:03:37,152 copying build/lib/galaxy/jobs/runners/pbs.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-02-22T05:03:37,156 copying build/lib/galaxy/jobs/runners/kubernetes.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-02-22T05:03:37,161 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-02-22T05:03:37,162 copying build/lib/galaxy/jobs/runners/util/sudo.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-02-22T05:03:37,165 copying build/lib/galaxy/jobs/runners/util/external.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-02-22T05:03:37,168 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script 2024-02-22T05:03:37,169 copying build/lib/galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script 2024-02-22T05:03:37,172 copying build/lib/galaxy/jobs/runners/util/job_script/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script 2024-02-22T05:03:37,175 copying build/lib/galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script 2024-02-22T05:03:37,179 copying build/lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script 2024-02-22T05:03:37,182 copying build/lib/galaxy/jobs/runners/util/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-02-22T05:03:37,184 copying build/lib/galaxy/jobs/runners/util/pykube_util.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-02-22T05:03:37,188 copying build/lib/galaxy/jobs/runners/util/fork_safe_write.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-02-22T05:03:37,190 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli 2024-02-22T05:03:37,192 copying build/lib/galaxy/jobs/runners/util/cli/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli 2024-02-22T05:03:37,195 copying build/lib/galaxy/jobs/runners/util/cli/factory.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli 2024-02-22T05:03:37,197 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/shell 2024-02-22T05:03:37,199 copying build/lib/galaxy/jobs/runners/util/cli/shell/local.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/shell 2024-02-22T05:03:37,202 copying build/lib/galaxy/jobs/runners/util/cli/shell/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/shell 2024-02-22T05:03:37,204 copying build/lib/galaxy/jobs/runners/util/cli/shell/rsh.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/shell 2024-02-22T05:03:37,207 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2024-02-22T05:03:37,208 copying build/lib/galaxy/jobs/runners/util/cli/job/slurm_torque.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2024-02-22T05:03:37,211 copying build/lib/galaxy/jobs/runners/util/cli/job/slurm.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2024-02-22T05:03:37,213 copying build/lib/galaxy/jobs/runners/util/cli/job/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2024-02-22T05:03:37,217 copying build/lib/galaxy/jobs/runners/util/cli/job/lsf.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2024-02-22T05:03:37,220 copying build/lib/galaxy/jobs/runners/util/cli/job/pbs.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2024-02-22T05:03:37,223 copying build/lib/galaxy/jobs/runners/util/cli/job/torque.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2024-02-22T05:03:37,226 copying build/lib/galaxy/jobs/runners/util/kill.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-02-22T05:03:37,229 copying build/lib/galaxy/jobs/runners/util/env.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-02-22T05:03:37,231 copying build/lib/galaxy/jobs/runners/util/process_groups.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-02-22T05:03:37,235 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/condor 2024-02-22T05:03:37,236 copying build/lib/galaxy/jobs/runners/util/condor/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/condor 2024-02-22T05:03:37,239 copying build/lib/galaxy/jobs/runners/cli.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-02-22T05:03:37,242 copying build/lib/galaxy/jobs/rule_helper.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-02-22T05:03:37,245 copying build/lib/galaxy/jobs/handler.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-02-22T05:03:37,249 copying build/lib/galaxy/jobs/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-02-22T05:03:37,256 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/rules 2024-02-22T05:03:37,257 copying build/lib/galaxy/jobs/rules/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/rules 2024-02-22T05:03:37,259 copying build/lib/galaxy/jobs/dynamic_tool_destination.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-02-22T05:03:37,264 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/splitters 2024-02-22T05:03:37,265 copying build/lib/galaxy/jobs/splitters/basic.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/splitters 2024-02-22T05:03:37,268 copying build/lib/galaxy/jobs/splitters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/splitters 2024-02-22T05:03:37,270 copying build/lib/galaxy/jobs/splitters/multi.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/splitters 2024-02-22T05:03:37,273 copying build/lib/galaxy/jobs/command_factory.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-02-22T05:03:37,278 copying build/lib/galaxy/jobs/mapper.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-02-22T05:03:37,281 copying build/lib/galaxy/jobs/stock_rules.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-02-22T05:03:37,284 copying build/lib/galaxy/jobs/manager.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-02-22T05:03:37,288 creating build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-02-22T05:03:37,289 copying build/lib/galaxy/workflow/trs_proxy.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-02-22T05:03:37,293 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/reports 2024-02-22T05:03:37,294 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/reports/generators 2024-02-22T05:03:37,295 copying build/lib/galaxy/workflow/reports/generators/markdown.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/reports/generators 2024-02-22T05:03:37,299 copying build/lib/galaxy/workflow/reports/generators/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/reports/generators 2024-02-22T05:03:37,301 copying build/lib/galaxy/workflow/reports/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/reports 2024-02-22T05:03:37,303 copying build/lib/galaxy/workflow/scheduling_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-02-22T05:03:37,307 copying build/lib/galaxy/workflow/run_request.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-02-22T05:03:37,310 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/schedulers 2024-02-22T05:03:37,312 copying build/lib/galaxy/workflow/schedulers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/schedulers 2024-02-22T05:03:37,315 copying build/lib/galaxy/workflow/schedulers/core.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/schedulers 2024-02-22T05:03:37,317 copying build/lib/galaxy/workflow/steps.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-02-22T05:03:37,320 copying build/lib/galaxy/workflow/extract.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-02-22T05:03:37,324 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/resources 2024-02-22T05:03:37,325 copying build/lib/galaxy/workflow/resources/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/resources 2024-02-22T05:03:37,328 copying build/lib/galaxy/workflow/resources/example.py.sample -> build/bdist.linux-armv7l/wheel/galaxy/workflow/resources 2024-02-22T05:03:37,335 copying build/lib/galaxy/workflow/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-02-22T05:03:37,337 copying build/lib/galaxy/workflow/run.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-02-22T05:03:37,340 copying build/lib/galaxy/workflow/modules.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-02-22T05:03:37,347 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/refactor 2024-02-22T05:03:37,348 copying build/lib/galaxy/workflow/refactor/schema.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/refactor 2024-02-22T05:03:37,351 copying build/lib/galaxy/workflow/refactor/execute.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/refactor 2024-02-22T05:03:37,354 copying build/lib/galaxy/workflow/refactor/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/refactor 2024-02-22T05:03:37,356 copying build/lib/galaxy/workflow/render.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-02-22T05:03:37,359 copying build/lib/galaxy/structured_app.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-02-22T05:03:37,362 creating build/bdist.linux-armv7l/wheel/galaxy/carbon_emissions 2024-02-22T05:03:37,364 copying build/lib/galaxy/carbon_emissions/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/carbon_emissions 2024-02-22T05:03:37,367 copying build/lib/galaxy/config_watchers.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-02-22T05:03:37,370 creating build/bdist.linux-armv7l/wheel/galaxy/webhooks 2024-02-22T05:03:37,372 copying build/lib/galaxy/webhooks/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/webhooks 2024-02-22T05:03:37,374 copying build/lib/galaxy/main_config.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-02-22T05:03:37,377 copying build/lib/galaxy/main.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-02-22T05:03:37,380 creating build/bdist.linux-armv7l/wheel/galaxy/work 2024-02-22T05:03:37,382 copying build/lib/galaxy/work/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/work 2024-02-22T05:03:37,384 copying build/lib/galaxy/work/context.py -> build/bdist.linux-armv7l/wheel/galaxy/work 2024-02-22T05:03:37,389 creating build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,390 copying build/lib/galaxy/managers/licenses.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,393 copying build/lib/galaxy/managers/item_tags.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,396 copying build/lib/galaxy/managers/cloudauthzs.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,399 copying build/lib/galaxy/managers/histories.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,402 copying build/lib/galaxy/managers/tools.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,405 copying build/lib/galaxy/managers/quotas.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,408 copying build/lib/galaxy/managers/group_roles.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,410 copying build/lib/galaxy/managers/users.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,415 copying build/lib/galaxy/managers/groups.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,418 copying build/lib/galaxy/managers/libraries.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,421 copying build/lib/galaxy/managers/visualizations.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,424 copying build/lib/galaxy/managers/group_users.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,427 copying build/lib/galaxy/managers/notification.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,430 copying build/lib/galaxy/managers/ratable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,433 copying build/lib/galaxy/managers/jobs.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,437 copying build/lib/galaxy/managers/collections_util.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,440 copying build/lib/galaxy/managers/display_applications.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,443 copying build/lib/galaxy/managers/workflows.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,448 copying build/lib/galaxy/managers/dbkeys.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,451 copying build/lib/galaxy/managers/markdown_export_base.css -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,453 copying build/lib/galaxy/managers/pages.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,457 copying build/lib/galaxy/managers/markdown_parse.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,460 copying build/lib/galaxy/managers/markdown_util.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,464 copying build/lib/galaxy/managers/citations.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,468 copying build/lib/galaxy/managers/deletable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,471 copying build/lib/galaxy/managers/taggable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,474 copying build/lib/galaxy/managers/tags.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,476 copying build/lib/galaxy/managers/history_contents.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,481 copying build/lib/galaxy/managers/metrics.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,484 copying build/lib/galaxy/managers/library_datasets.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,488 copying build/lib/galaxy/managers/sharable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,492 copying build/lib/galaxy/managers/genomes.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,495 copying build/lib/galaxy/managers/api_keys.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,498 copying build/lib/galaxy/managers/lddas.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,500 copying build/lib/galaxy/managers/licenses.json -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,507 copying build/lib/galaxy/managers/session.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,508 copying build/lib/galaxy/managers/export_tracker.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,511 copying build/lib/galaxy/managers/tool_data.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,517 copying build/lib/galaxy/managers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,520 copying build/lib/galaxy/managers/folders.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,523 copying build/lib/galaxy/managers/datatypes.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,526 copying build/lib/galaxy/managers/rbac_secured.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,530 copying build/lib/galaxy/managers/remote_files.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,533 copying build/lib/galaxy/managers/hdas.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,537 copying build/lib/galaxy/managers/tasks.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,539 copying build/lib/galaxy/managers/executables.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,542 copying build/lib/galaxy/managers/forms.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,544 copying build/lib/galaxy/managers/collections.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,548 copying build/lib/galaxy/managers/job_connections.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,551 copying build/lib/galaxy/managers/datasets.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,555 copying build/lib/galaxy/managers/context.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,558 copying build/lib/galaxy/managers/interactivetool.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,561 copying build/lib/galaxy/managers/configuration.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,564 copying build/lib/galaxy/managers/model_stores.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,569 copying build/lib/galaxy/managers/secured.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,573 copying build/lib/galaxy/managers/annotatable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,577 copying build/lib/galaxy/managers/roles.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,580 copying build/lib/galaxy/managers/base.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,585 copying build/lib/galaxy/managers/cloud.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,588 copying build/lib/galaxy/managers/hdcas.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-02-22T05:03:37,592 copying build/lib/galaxy/queues.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-02-22T05:03:37,595 creating build/bdist.linux-armv7l/wheel/galaxy/authnz 2024-02-22T05:03:37,596 copying build/lib/galaxy/authnz/custos_authnz.py -> build/bdist.linux-armv7l/wheel/galaxy/authnz 2024-02-22T05:03:37,601 copying build/lib/galaxy/authnz/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/authnz 2024-02-22T05:03:37,604 copying build/lib/galaxy/authnz/managers.py -> build/bdist.linux-armv7l/wheel/galaxy/authnz 2024-02-22T05:03:37,612 copying build/lib/galaxy/authnz/psa_authnz.py -> build/bdist.linux-armv7l/wheel/galaxy/authnz 2024-02-22T05:03:37,617 copying build/lib/galaxy/authnz/util.py -> build/bdist.linux-armv7l/wheel/galaxy/authnz 2024-02-22T05:03:37,620 copying build/lib/galaxy/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-02-22T05:03:37,625 creating build/bdist.linux-armv7l/wheel/galaxy/forms 2024-02-22T05:03:37,627 copying build/lib/galaxy/forms/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/forms 2024-02-22T05:03:37,630 copying build/lib/galaxy/forms/forms.py -> build/bdist.linux-armv7l/wheel/galaxy/forms 2024-02-22T05:03:37,635 copying build/lib/galaxy/queue_worker.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-02-22T05:03:37,641 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed 2024-02-22T05:03:37,644 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/tools 2024-02-22T05:03:37,646 copying build/lib/galaxy/tool_shed/tools/data_table_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/tools 2024-02-22T05:03:37,651 copying build/lib/galaxy/tool_shed/tools/tool_validator.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/tools 2024-02-22T05:03:37,655 copying build/lib/galaxy/tool_shed/tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/tools 2024-02-22T05:03:37,659 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/unittest_utils 2024-02-22T05:03:37,661 copying build/lib/galaxy/tool_shed/unittest_utils/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/unittest_utils 2024-02-22T05:03:37,667 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/metadata 2024-02-22T05:03:37,669 copying build/lib/galaxy/tool_shed/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/metadata 2024-02-22T05:03:37,672 copying build/lib/galaxy/tool_shed/metadata/metadata_generator.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/metadata 2024-02-22T05:03:37,677 copying build/lib/galaxy/tool_shed/repository_type.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed 2024-02-22T05:03:37,680 copying build/lib/galaxy/tool_shed/cache.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed 2024-02-22T05:03:37,684 copying build/lib/galaxy/tool_shed/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed 2024-02-22T05:03:37,687 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install 2024-02-22T05:03:37,688 copying build/lib/galaxy/tool_shed/galaxy_install/installed_repository_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install 2024-02-22T05:03:37,695 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/tools 2024-02-22T05:03:37,697 copying build/lib/galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/tools 2024-02-22T05:03:37,703 copying build/lib/galaxy/tool_shed/galaxy_install/tools/data_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/tools 2024-02-22T05:03:37,707 copying build/lib/galaxy/tool_shed/galaxy_install/tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/tools 2024-02-22T05:03:37,710 copying build/lib/galaxy/tool_shed/galaxy_install/client.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install 2024-02-22T05:03:37,713 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/metadata 2024-02-22T05:03:37,715 copying build/lib/galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/metadata 2024-02-22T05:03:37,718 copying build/lib/galaxy/tool_shed/galaxy_install/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/metadata 2024-02-22T05:03:37,721 copying build/lib/galaxy/tool_shed/galaxy_install/update_repository_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install 2024-02-22T05:03:37,724 copying build/lib/galaxy/tool_shed/galaxy_install/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install 2024-02-22T05:03:37,728 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/repository_dependencies 2024-02-22T05:03:37,730 copying build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/repository_dependencies 2024-02-22T05:03:37,736 copying build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/repository_dependencies 2024-02-22T05:03:37,739 copying build/lib/galaxy/tool_shed/galaxy_install/install_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install 2024-02-22T05:03:37,744 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-02-22T05:03:37,746 copying build/lib/galaxy/tool_shed/util/tool_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-02-22T05:03:37,749 copying build/lib/galaxy/tool_shed/util/metadata_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-02-22T05:03:37,751 copying build/lib/galaxy/tool_shed/util/repository_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-02-22T05:03:37,755 copying build/lib/galaxy/tool_shed/util/shed_util_common.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-02-22T05:03:37,758 copying build/lib/galaxy/tool_shed/util/utility_container_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-02-22T05:03:37,762 copying build/lib/galaxy/tool_shed/util/container_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-02-22T05:03:37,765 copying build/lib/galaxy/tool_shed/util/dependency_display.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-02-22T05:03:37,768 copying build/lib/galaxy/tool_shed/util/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-02-22T05:03:37,770 copying build/lib/galaxy/tool_shed/util/tool_dependency_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-02-22T05:03:37,773 copying build/lib/galaxy/tool_shed/util/basic_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-02-22T05:03:37,776 copying build/lib/galaxy/tool_shed/util/hg_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-02-22T05:03:37,780 creating build/bdist.linux-armv7l/wheel/galaxy/actions 2024-02-22T05:03:37,781 copying build/lib/galaxy/actions/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/actions 2024-02-22T05:03:37,783 copying build/lib/galaxy/actions/library.py -> build/bdist.linux-armv7l/wheel/galaxy/actions 2024-02-22T05:03:37,786 copying build/lib/galaxy/py.typed -> build/bdist.linux-armv7l/wheel/galaxy 2024-02-22T05:03:37,788 creating build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-02-22T05:03:37,790 copying build/lib/galaxy/dependencies/pinned-lint-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-02-22T05:03:37,793 copying build/lib/galaxy/dependencies/lint-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-02-22T05:03:37,796 copying build/lib/galaxy/dependencies/update_lint_requirements.sh -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-02-22T05:03:37,799 copying build/lib/galaxy/dependencies/pinned-typecheck-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-02-22T05:03:37,802 copying build/lib/galaxy/dependencies/update.sh -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-02-22T05:03:37,804 copying build/lib/galaxy/dependencies/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-02-22T05:03:37,808 copying build/lib/galaxy/dependencies/pinned-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-02-22T05:03:37,811 copying build/lib/galaxy/dependencies/conditional-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-02-22T05:03:37,814 copying build/lib/galaxy/dependencies/dev-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-02-22T05:03:37,818 creating build/bdist.linux-armv7l/wheel/tool_shed_client 2024-02-22T05:03:37,819 copying build/lib/tool_shed_client/trs_util.py -> build/bdist.linux-armv7l/wheel/tool_shed_client 2024-02-22T05:03:37,822 creating build/bdist.linux-armv7l/wheel/tool_shed_client/schema 2024-02-22T05:03:37,824 copying build/lib/tool_shed_client/schema/__init__.py -> build/bdist.linux-armv7l/wheel/tool_shed_client/schema 2024-02-22T05:03:37,827 copying build/lib/tool_shed_client/schema/trs.py -> build/bdist.linux-armv7l/wheel/tool_shed_client/schema 2024-02-22T05:03:37,830 copying build/lib/tool_shed_client/schema/trs_service_info.py -> build/bdist.linux-armv7l/wheel/tool_shed_client/schema 2024-02-22T05:03:37,832 copying build/lib/tool_shed_client/__init__.py -> build/bdist.linux-armv7l/wheel/tool_shed_client 2024-02-22T05:03:37,834 copying build/lib/tool_shed_client/py.typed -> build/bdist.linux-armv7l/wheel/tool_shed_client 2024-02-22T05:03:37,835 running install_egg_info 2024-02-22T05:03:37,847 Copying galaxy_app.egg-info to build/bdist.linux-armv7l/wheel/galaxy_app-23.2.1-py3.11.egg-info 2024-02-22T05:03:37,869 running install_scripts 2024-02-22T05:03:37,906 creating build/bdist.linux-armv7l/wheel/galaxy_app-23.2.1.dist-info/WHEEL 2024-02-22T05:03:37,909 creating '/tmp/pip-wheel-hnzx64b5/.tmp-u_5w4w2d/galaxy_app-23.2.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-02-22T05:03:37,912 adding 'galaxy/__init__.py' 2024-02-22T05:03:37,916 adding 'galaxy/app.py' 2024-02-22T05:03:37,919 adding 'galaxy/config_watchers.py' 2024-02-22T05:03:37,920 adding 'galaxy/di.py' 2024-02-22T05:03:37,922 adding 'galaxy/main.py' 2024-02-22T05:03:37,924 adding 'galaxy/main_config.py' 2024-02-22T05:03:37,925 adding 'galaxy/py.typed' 2024-02-22T05:03:37,928 adding 'galaxy/queue_worker.py' 2024-02-22T05:03:37,929 adding 'galaxy/queues.py' 2024-02-22T05:03:37,931 adding 'galaxy/structured_app.py' 2024-02-22T05:03:37,933 adding 'galaxy/actions/__init__.py' 2024-02-22T05:03:37,935 adding 'galaxy/actions/library.py' 2024-02-22T05:03:37,937 adding 'galaxy/app_unittest_utils/__init__.py' 2024-02-22T05:03:37,939 adding 'galaxy/app_unittest_utils/galaxy_mock.py' 2024-02-22T05:03:37,941 adding 'galaxy/app_unittest_utils/toolbox_support.py' 2024-02-22T05:03:37,942 adding 'galaxy/app_unittest_utils/tools_support.py' 2024-02-22T05:03:37,945 adding 'galaxy/authnz/__init__.py' 2024-02-22T05:03:37,948 adding 'galaxy/authnz/custos_authnz.py' 2024-02-22T05:03:37,952 adding 'galaxy/authnz/managers.py' 2024-02-22T05:03:37,955 adding 'galaxy/authnz/psa_authnz.py' 2024-02-22T05:03:37,957 adding 'galaxy/authnz/util.py' 2024-02-22T05:03:37,959 adding 'galaxy/carbon_emissions/__init__.py' 2024-02-22T05:03:37,961 adding 'galaxy/celery/__init__.py' 2024-02-22T05:03:37,962 adding 'galaxy/celery/_serialization.py' 2024-02-22T05:03:37,964 adding 'galaxy/celery/base_task.py' 2024-02-22T05:03:37,966 adding 'galaxy/celery/tasks.py' 2024-02-22T05:03:37,969 adding 'galaxy/dependencies/__init__.py' 2024-02-22T05:03:37,970 adding 'galaxy/dependencies/conditional-requirements.txt' 2024-02-22T05:03:37,972 adding 'galaxy/dependencies/dev-requirements.txt' 2024-02-22T05:03:37,973 adding 'galaxy/dependencies/lint-requirements.txt' 2024-02-22T05:03:37,974 adding 'galaxy/dependencies/pinned-lint-requirements.txt' 2024-02-22T05:03:37,976 adding 'galaxy/dependencies/pinned-requirements.txt' 2024-02-22T05:03:37,977 adding 'galaxy/dependencies/pinned-typecheck-requirements.txt' 2024-02-22T05:03:37,979 adding 'galaxy/dependencies/update.sh' 2024-02-22T05:03:37,980 adding 'galaxy/dependencies/update_lint_requirements.sh' 2024-02-22T05:03:37,982 adding 'galaxy/forms/__init__.py' 2024-02-22T05:03:37,983 adding 'galaxy/forms/forms.py' 2024-02-22T05:03:37,999 adding 'galaxy/jobs/__init__.py' 2024-02-22T05:03:38,002 adding 'galaxy/jobs/command_factory.py' 2024-02-22T05:03:38,010 adding 'galaxy/jobs/dynamic_tool_destination.py' 2024-02-22T05:03:38,017 adding 'galaxy/jobs/handler.py' 2024-02-22T05:03:38,019 adding 'galaxy/jobs/manager.py' 2024-02-22T05:03:38,021 adding 'galaxy/jobs/mapper.py' 2024-02-22T05:03:38,023 adding 'galaxy/jobs/rule_helper.py' 2024-02-22T05:03:38,025 adding 'galaxy/jobs/stock_rules.py' 2024-02-22T05:03:38,027 adding 'galaxy/jobs/rules/__init__.py' 2024-02-22T05:03:38,033 adding 'galaxy/jobs/runners/__init__.py' 2024-02-22T05:03:38,036 adding 'galaxy/jobs/runners/aws.py' 2024-02-22T05:03:38,038 adding 'galaxy/jobs/runners/chronos.py' 2024-02-22T05:03:38,040 adding 'galaxy/jobs/runners/cli.py' 2024-02-22T05:03:38,043 adding 'galaxy/jobs/runners/condor.py' 2024-02-22T05:03:38,046 adding 'galaxy/jobs/runners/drmaa.py' 2024-02-22T05:03:38,049 adding 'galaxy/jobs/runners/godocker.py' 2024-02-22T05:03:38,054 adding 'galaxy/jobs/runners/kubernetes.py' 2024-02-22T05:03:38,056 adding 'galaxy/jobs/runners/local.py' 2024-02-22T05:03:38,060 adding 'galaxy/jobs/runners/pbs.py' 2024-02-22T05:03:38,067 adding 'galaxy/jobs/runners/pulsar.py' 2024-02-22T05:03:38,069 adding 'galaxy/jobs/runners/slurm.py' 2024-02-22T05:03:38,071 adding 'galaxy/jobs/runners/state_handler_factory.py' 2024-02-22T05:03:38,073 adding 'galaxy/jobs/runners/tasks.py' 2024-02-22T05:03:38,077 adding 'galaxy/jobs/runners/univa.py' 2024-02-22T05:03:38,079 adding 'galaxy/jobs/runners/state_handlers/__init__.py' 2024-02-22T05:03:38,081 adding 'galaxy/jobs/runners/state_handlers/_safe_eval.py' 2024-02-22T05:03:38,083 adding 'galaxy/jobs/runners/state_handlers/resubmit.py' 2024-02-22T05:03:38,084 adding 'galaxy/jobs/runners/util/__init__.py' 2024-02-22T05:03:38,086 adding 'galaxy/jobs/runners/util/env.py' 2024-02-22T05:03:38,094 adding 'galaxy/jobs/runners/util/external.py' 2024-02-22T05:03:38,096 adding 'galaxy/jobs/runners/util/fork_safe_write.py' 2024-02-22T05:03:38,097 adding 'galaxy/jobs/runners/util/kill.py' 2024-02-22T05:03:38,098 adding 'galaxy/jobs/runners/util/process_groups.py' 2024-02-22T05:03:38,100 adding 'galaxy/jobs/runners/util/pykube_util.py' 2024-02-22T05:03:38,102 adding 'galaxy/jobs/runners/util/sudo.py' 2024-02-22T05:03:38,104 adding 'galaxy/jobs/runners/util/cli/__init__.py' 2024-02-22T05:03:38,105 adding 'galaxy/jobs/runners/util/cli/factory.py' 2024-02-22T05:03:38,107 adding 'galaxy/jobs/runners/util/cli/job/__init__.py' 2024-02-22T05:03:38,108 adding 'galaxy/jobs/runners/util/cli/job/lsf.py' 2024-02-22T05:03:38,110 adding 'galaxy/jobs/runners/util/cli/job/pbs.py' 2024-02-22T05:03:38,111 adding 'galaxy/jobs/runners/util/cli/job/slurm.py' 2024-02-22T05:03:38,113 adding 'galaxy/jobs/runners/util/cli/job/slurm_torque.py' 2024-02-22T05:03:38,115 adding 'galaxy/jobs/runners/util/cli/job/torque.py' 2024-02-22T05:03:38,117 adding 'galaxy/jobs/runners/util/cli/shell/__init__.py' 2024-02-22T05:03:38,118 adding 'galaxy/jobs/runners/util/cli/shell/local.py' 2024-02-22T05:03:38,120 adding 'galaxy/jobs/runners/util/cli/shell/rsh.py' 2024-02-22T05:03:38,122 adding 'galaxy/jobs/runners/util/condor/__init__.py' 2024-02-22T05:03:38,124 adding 'galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh' 2024-02-22T05:03:38,126 adding 'galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh' 2024-02-22T05:03:38,127 adding 'galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh' 2024-02-22T05:03:38,129 adding 'galaxy/jobs/runners/util/job_script/__init__.py' 2024-02-22T05:03:38,131 adding 'galaxy/jobs/splitters/__init__.py' 2024-02-22T05:03:38,132 adding 'galaxy/jobs/splitters/basic.py' 2024-02-22T05:03:38,134 adding 'galaxy/jobs/splitters/multi.py' 2024-02-22T05:03:38,137 adding 'galaxy/managers/__init__.py' 2024-02-22T05:03:38,139 adding 'galaxy/managers/annotatable.py' 2024-02-22T05:03:38,140 adding 'galaxy/managers/api_keys.py' 2024-02-22T05:03:38,148 adding 'galaxy/managers/base.py' 2024-02-22T05:03:38,150 adding 'galaxy/managers/citations.py' 2024-02-22T05:03:38,153 adding 'galaxy/managers/cloud.py' 2024-02-22T05:03:38,154 adding 'galaxy/managers/cloudauthzs.py' 2024-02-22T05:03:38,158 adding 'galaxy/managers/collections.py' 2024-02-22T05:03:38,161 adding 'galaxy/managers/collections_util.py' 2024-02-22T05:03:38,163 adding 'galaxy/managers/configuration.py' 2024-02-22T05:03:38,165 adding 'galaxy/managers/context.py' 2024-02-22T05:03:38,170 adding 'galaxy/managers/datasets.py' 2024-02-22T05:03:38,171 adding 'galaxy/managers/datatypes.py' 2024-02-22T05:03:38,173 adding 'galaxy/managers/dbkeys.py' 2024-02-22T05:03:38,175 adding 'galaxy/managers/deletable.py' 2024-02-22T05:03:38,176 adding 'galaxy/managers/display_applications.py' 2024-02-22T05:03:38,177 adding 'galaxy/managers/executables.py' 2024-02-22T05:03:38,179 adding 'galaxy/managers/export_tracker.py' 2024-02-22T05:03:38,182 adding 'galaxy/managers/folders.py' 2024-02-22T05:03:38,183 adding 'galaxy/managers/forms.py' 2024-02-22T05:03:38,185 adding 'galaxy/managers/genomes.py' 2024-02-22T05:03:38,186 adding 'galaxy/managers/group_roles.py' 2024-02-22T05:03:38,188 adding 'galaxy/managers/group_users.py' 2024-02-22T05:03:38,189 adding 'galaxy/managers/groups.py' 2024-02-22T05:03:38,193 adding 'galaxy/managers/hdas.py' 2024-02-22T05:03:38,195 adding 'galaxy/managers/hdcas.py' 2024-02-22T05:03:38,199 adding 'galaxy/managers/histories.py' 2024-02-22T05:03:38,202 adding 'galaxy/managers/history_contents.py' 2024-02-22T05:03:38,205 adding 'galaxy/managers/interactivetool.py' 2024-02-22T05:03:38,206 adding 'galaxy/managers/item_tags.py' 2024-02-22T05:03:38,208 adding 'galaxy/managers/job_connections.py' 2024-02-22T05:03:38,213 adding 'galaxy/managers/jobs.py' 2024-02-22T05:03:38,214 adding 'galaxy/managers/lddas.py' 2024-02-22T05:03:38,217 adding 'galaxy/managers/libraries.py' 2024-02-22T05:03:38,219 adding 'galaxy/managers/library_datasets.py' 2024-02-22T05:03:38,230 adding 'galaxy/managers/licenses.json' 2024-02-22T05:03:38,233 adding 'galaxy/managers/licenses.py' 2024-02-22T05:03:38,234 adding 'galaxy/managers/markdown_export_base.css' 2024-02-22T05:03:38,236 adding 'galaxy/managers/markdown_parse.py' 2024-02-22T05:03:38,240 adding 'galaxy/managers/markdown_util.py' 2024-02-22T05:03:38,242 adding 'galaxy/managers/metrics.py' 2024-02-22T05:03:38,244 adding 'galaxy/managers/model_stores.py' 2024-02-22T05:03:38,246 adding 'galaxy/managers/notification.py' 2024-02-22T05:03:38,249 adding 'galaxy/managers/pages.py' 2024-02-22T05:03:38,251 adding 'galaxy/managers/quotas.py' 2024-02-22T05:03:38,252 adding 'galaxy/managers/ratable.py' 2024-02-22T05:03:38,254 adding 'galaxy/managers/rbac_secured.py' 2024-02-22T05:03:38,255 adding 'galaxy/managers/remote_files.py' 2024-02-22T05:03:38,257 adding 'galaxy/managers/roles.py' 2024-02-22T05:03:38,259 adding 'galaxy/managers/secured.py' 2024-02-22T05:03:38,260 adding 'galaxy/managers/session.py' 2024-02-22T05:03:38,263 adding 'galaxy/managers/sharable.py' 2024-02-22T05:03:38,264 adding 'galaxy/managers/taggable.py' 2024-02-22T05:03:38,266 adding 'galaxy/managers/tags.py' 2024-02-22T05:03:38,267 adding 'galaxy/managers/tasks.py' 2024-02-22T05:03:38,269 adding 'galaxy/managers/tool_data.py' 2024-02-22T05:03:38,270 adding 'galaxy/managers/tools.py' 2024-02-22T05:03:38,275 adding 'galaxy/managers/users.py' 2024-02-22T05:03:38,277 adding 'galaxy/managers/visualizations.py' 2024-02-22T05:03:38,288 adding 'galaxy/managers/workflows.py' 2024-02-22T05:03:38,290 adding 'galaxy/tool_shed/__init__.py' 2024-02-22T05:03:38,292 adding 'galaxy/tool_shed/cache.py' 2024-02-22T05:03:38,293 adding 'galaxy/tool_shed/repository_type.py' 2024-02-22T05:03:38,295 adding 'galaxy/tool_shed/galaxy_install/__init__.py' 2024-02-22T05:03:38,297 adding 'galaxy/tool_shed/galaxy_install/client.py' 2024-02-22T05:03:38,302 adding 'galaxy/tool_shed/galaxy_install/install_manager.py' 2024-02-22T05:03:38,308 adding 'galaxy/tool_shed/galaxy_install/installed_repository_manager.py' 2024-02-22T05:03:38,309 adding 'galaxy/tool_shed/galaxy_install/update_repository_manager.py' 2024-02-22T05:03:38,313 adding 'galaxy/tool_shed/galaxy_install/metadata/__init__.py' 2024-02-22T05:03:38,315 adding 'galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py' 2024-02-22T05:03:38,317 adding 'galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py' 2024-02-22T05:03:38,321 adding 'galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py' 2024-02-22T05:03:38,323 adding 'galaxy/tool_shed/galaxy_install/tools/__init__.py' 2024-02-22T05:03:38,325 adding 'galaxy/tool_shed/galaxy_install/tools/data_manager.py' 2024-02-22T05:03:38,328 adding 'galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py' 2024-02-22T05:03:38,330 adding 'galaxy/tool_shed/metadata/__init__.py' 2024-02-22T05:03:38,336 adding 'galaxy/tool_shed/metadata/metadata_generator.py' 2024-02-22T05:03:38,339 adding 'galaxy/tool_shed/tools/__init__.py' 2024-02-22T05:03:38,341 adding 'galaxy/tool_shed/tools/data_table_manager.py' 2024-02-22T05:03:38,342 adding 'galaxy/tool_shed/tools/tool_validator.py' 2024-02-22T05:03:38,344 adding 'galaxy/tool_shed/unittest_utils/__init__.py' 2024-02-22T05:03:38,347 adding 'galaxy/tool_shed/util/__init__.py' 2024-02-22T05:03:38,348 adding 'galaxy/tool_shed/util/basic_util.py' 2024-02-22T05:03:38,350 adding 'galaxy/tool_shed/util/container_util.py' 2024-02-22T05:03:38,352 adding 'galaxy/tool_shed/util/dependency_display.py' 2024-02-22T05:03:38,354 adding 'galaxy/tool_shed/util/hg_util.py' 2024-02-22T05:03:38,356 adding 'galaxy/tool_shed/util/metadata_util.py' 2024-02-22T05:03:38,360 adding 'galaxy/tool_shed/util/repository_util.py' 2024-02-22T05:03:38,362 adding 'galaxy/tool_shed/util/shed_util_common.py' 2024-02-22T05:03:38,364 adding 'galaxy/tool_shed/util/tool_dependency_util.py' 2024-02-22T05:03:38,366 adding 'galaxy/tool_shed/util/tool_util.py' 2024-02-22T05:03:38,370 adding 'galaxy/tool_shed/util/utility_container_manager.py' 2024-02-22T05:03:38,392 adding 'galaxy/tools/__init__.py' 2024-02-22T05:03:38,394 adding 'galaxy/tools/apply_rules.xml' 2024-02-22T05:03:38,395 adding 'galaxy/tools/biotools.py' 2024-02-22T05:03:38,397 adding 'galaxy/tools/build_list.xml' 2024-02-22T05:03:38,398 adding 'galaxy/tools/build_list_1.2.0.xml' 2024-02-22T05:03:38,400 adding 'galaxy/tools/cache.py' 2024-02-22T05:03:38,403 adding 'galaxy/tools/data_fetch.py' 2024-02-22T05:03:38,405 adding 'galaxy/tools/data_fetch.xml' 2024-02-22T05:03:38,406 adding 'galaxy/tools/duplicate_file_to_collection.xml' 2024-02-22T05:03:38,408 adding 'galaxy/tools/errors.py' 2024-02-22T05:03:38,412 adding 'galaxy/tools/evaluation.py' 2024-02-22T05:03:38,414 adding 'galaxy/tools/exception_handling.py' 2024-02-22T05:03:38,417 adding 'galaxy/tools/execute.py' 2024-02-22T05:03:38,419 adding 'galaxy/tools/extract_dataset.xml' 2024-02-22T05:03:38,420 adding 'galaxy/tools/filter_empty_collection.xml' 2024-02-22T05:03:38,421 adding 'galaxy/tools/filter_failed_collection.xml' 2024-02-22T05:03:38,423 adding 'galaxy/tools/filter_from_file.xml' 2024-02-22T05:03:38,424 adding 'galaxy/tools/flatten_collection.xml' 2024-02-22T05:03:38,426 adding 'galaxy/tools/merge_collection.xml' 2024-02-22T05:03:38,428 adding 'galaxy/tools/recommendations.py' 2024-02-22T05:03:38,430 adding 'galaxy/tools/relabel_from_file.xml' 2024-02-22T05:03:38,431 adding 'galaxy/tools/remote_tool_eval.py' 2024-02-22T05:03:38,433 adding 'galaxy/tools/repositories.py' 2024-02-22T05:03:38,434 adding 'galaxy/tools/sort_collection_list.xml' 2024-02-22T05:03:38,435 adding 'galaxy/tools/special_tools.py' 2024-02-22T05:03:38,437 adding 'galaxy/tools/tag_collection_from_file.xml' 2024-02-22T05:03:38,439 adding 'galaxy/tools/test.py' 2024-02-22T05:03:38,441 adding 'galaxy/tools/unzip_collection.xml' 2024-02-22T05:03:38,444 adding 'galaxy/tools/wrappers.py' 2024-02-22T05:03:38,446 adding 'galaxy/tools/zip_collection.xml' 2024-02-22T05:03:38,453 adding 'galaxy/tools/actions/__init__.py' 2024-02-22T05:03:38,455 adding 'galaxy/tools/actions/data_manager.py' 2024-02-22T05:03:38,456 adding 'galaxy/tools/actions/data_source.py' 2024-02-22T05:03:38,458 adding 'galaxy/tools/actions/history_imp_exp.py' 2024-02-22T05:03:38,460 adding 'galaxy/tools/actions/metadata.py' 2024-02-22T05:03:38,461 adding 'galaxy/tools/actions/model_operations.py' 2024-02-22T05:03:38,463 adding 'galaxy/tools/actions/upload.py' 2024-02-22T05:03:38,465 adding 'galaxy/tools/actions/upload_common.py' 2024-02-22T05:03:38,467 adding 'galaxy/tools/bundled/__init__.py' 2024-02-22T05:03:38,469 adding 'galaxy/tools/bundled/data_export/export_remote.py' 2024-02-22T05:03:38,471 adding 'galaxy/tools/bundled/data_export/export_remote.xml' 2024-02-22T05:03:38,473 adding 'galaxy/tools/bundled/data_export/send.py' 2024-02-22T05:03:38,474 adding 'galaxy/tools/bundled/data_export/send.xml' 2024-02-22T05:03:38,476 adding 'galaxy/tools/bundled/data_source/__init__.py' 2024-02-22T05:03:38,478 adding 'galaxy/tools/bundled/data_source/access_libraries.xml' 2024-02-22T05:03:38,479 adding 'galaxy/tools/bundled/data_source/biomart.xml' 2024-02-22T05:03:38,480 adding 'galaxy/tools/bundled/data_source/biomart_test.xml' 2024-02-22T05:03:38,482 adding 'galaxy/tools/bundled/data_source/cbi_rice_mart.xml' 2024-02-22T05:03:38,483 adding 'galaxy/tools/bundled/data_source/data_source.py' 2024-02-22T05:03:38,485 adding 'galaxy/tools/bundled/data_source/ebi_sra.xml' 2024-02-22T05:03:38,486 adding 'galaxy/tools/bundled/data_source/eupathdb.xml' 2024-02-22T05:03:38,487 adding 'galaxy/tools/bundled/data_source/fly_modencode.xml' 2024-02-22T05:03:38,488 adding 'galaxy/tools/bundled/data_source/flymine.xml' 2024-02-22T05:03:38,490 adding 'galaxy/tools/bundled/data_source/flymine_test.xml' 2024-02-22T05:03:38,491 adding 'galaxy/tools/bundled/data_source/genbank.py' 2024-02-22T05:03:38,492 adding 'galaxy/tools/bundled/data_source/genbank.xml' 2024-02-22T05:03:38,494 adding 'galaxy/tools/bundled/data_source/gramene_mart.xml' 2024-02-22T05:03:38,495 adding 'galaxy/tools/bundled/data_source/hapmapmart.xml' 2024-02-22T05:03:38,496 adding 'galaxy/tools/bundled/data_source/hbvar.xml' 2024-02-22T05:03:38,498 adding 'galaxy/tools/bundled/data_source/import.py' 2024-02-22T05:03:38,499 adding 'galaxy/tools/bundled/data_source/import.xml' 2024-02-22T05:03:38,501 adding 'galaxy/tools/bundled/data_source/intermine.xml' 2024-02-22T05:03:38,502 adding 'galaxy/tools/bundled/data_source/metabolicmine.xml' 2024-02-22T05:03:38,503 adding 'galaxy/tools/bundled/data_source/microbial_import.py' 2024-02-22T05:03:38,505 adding 'galaxy/tools/bundled/data_source/microbial_import.xml' 2024-02-22T05:03:38,506 adding 'galaxy/tools/bundled/data_source/microbial_import_code.py' 2024-02-22T05:03:38,508 adding 'galaxy/tools/bundled/data_source/modmine.xml' 2024-02-22T05:03:38,509 adding 'galaxy/tools/bundled/data_source/mousemine.xml' 2024-02-22T05:03:38,510 adding 'galaxy/tools/bundled/data_source/ncbi_datasets.xml' 2024-02-22T05:03:38,512 adding 'galaxy/tools/bundled/data_source/ratmine.xml' 2024-02-22T05:03:38,513 adding 'galaxy/tools/bundled/data_source/sra.xml' 2024-02-22T05:03:38,514 adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml' 2024-02-22T05:03:38,516 adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml' 2024-02-22T05:03:38,517 adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml' 2024-02-22T05:03:38,519 adding 'galaxy/tools/bundled/data_source/upload.py' 2024-02-22T05:03:38,522 adding 'galaxy/tools/bundled/data_source/upload.xml' 2024-02-22T05:03:38,523 adding 'galaxy/tools/bundled/data_source/worm_modencode.xml' 2024-02-22T05:03:38,524 adding 'galaxy/tools/bundled/data_source/wormbase.xml' 2024-02-22T05:03:38,525 adding 'galaxy/tools/bundled/data_source/wormbase_test.xml' 2024-02-22T05:03:38,527 adding 'galaxy/tools/bundled/data_source/yeastmine.xml' 2024-02-22T05:03:38,528 adding 'galaxy/tools/bundled/data_source/zebrafishmine.xml' 2024-02-22T05:03:38,530 adding 'galaxy/tools/bundled/expression_tools/expression_macros.xml' 2024-02-22T05:03:38,531 adding 'galaxy/tools/bundled/expression_tools/parse_values_from_file.xml' 2024-02-22T05:03:38,533 adding 'galaxy/tools/bundled/expression_tools/pick_value.xml' 2024-02-22T05:03:38,535 adding 'galaxy/tools/bundled/extract/__init__.py' 2024-02-22T05:03:38,537 adding 'galaxy/tools/bundled/extract/extract_genomic_dna.py' 2024-02-22T05:03:38,539 adding 'galaxy/tools/bundled/extract/extract_genomic_dna.xml' 2024-02-22T05:03:38,540 adding 'galaxy/tools/bundled/extract/liftOver_wrapper.py' 2024-02-22T05:03:38,542 adding 'galaxy/tools/bundled/extract/liftOver_wrapper.xml' 2024-02-22T05:03:38,568 adding 'galaxy/tools/bundled/filters/CreateInterval.pl' 2024-02-22T05:03:38,569 adding 'galaxy/tools/bundled/filters/CreateInterval.xml' 2024-02-22T05:03:38,570 adding 'galaxy/tools/bundled/filters/__init__.py' 2024-02-22T05:03:38,571 adding 'galaxy/tools/bundled/filters/axt_to_concat_fasta.py' 2024-02-22T05:03:38,573 adding 'galaxy/tools/bundled/filters/axt_to_concat_fasta.xml' 2024-02-22T05:03:38,574 adding 'galaxy/tools/bundled/filters/axt_to_fasta.py' 2024-02-22T05:03:38,576 adding 'galaxy/tools/bundled/filters/axt_to_fasta.xml' 2024-02-22T05:03:38,577 adding 'galaxy/tools/bundled/filters/axt_to_lav.py' 2024-02-22T05:03:38,579 adding 'galaxy/tools/bundled/filters/axt_to_lav.xml' 2024-02-22T05:03:38,580 adding 'galaxy/tools/bundled/filters/axt_to_lav_code.py' 2024-02-22T05:03:38,581 adding 'galaxy/tools/bundled/filters/bed2gff.xml' 2024-02-22T05:03:38,583 adding 'galaxy/tools/bundled/filters/bed_to_bigbed.xml' 2024-02-22T05:03:38,584 adding 'galaxy/tools/bundled/filters/bed_to_gff_converter.py' 2024-02-22T05:03:38,585 adding 'galaxy/tools/bundled/filters/catWrapper.py' 2024-02-22T05:03:38,587 adding 'galaxy/tools/bundled/filters/catWrapper.xml' 2024-02-22T05:03:38,588 adding 'galaxy/tools/bundled/filters/changeCase.pl' 2024-02-22T05:03:38,589 adding 'galaxy/tools/bundled/filters/changeCase.xml' 2024-02-22T05:03:38,590 adding 'galaxy/tools/bundled/filters/commWrapper.pl' 2024-02-22T05:03:38,592 adding 'galaxy/tools/bundled/filters/commWrapper.xml' 2024-02-22T05:03:38,593 adding 'galaxy/tools/bundled/filters/compare.xml' 2024-02-22T05:03:38,594 adding 'galaxy/tools/bundled/filters/condense_characters.pl' 2024-02-22T05:03:38,595 adding 'galaxy/tools/bundled/filters/condense_characters.xml' 2024-02-22T05:03:38,596 adding 'galaxy/tools/bundled/filters/convert_characters.py' 2024-02-22T05:03:38,597 adding 'galaxy/tools/bundled/filters/convert_characters.xml' 2024-02-22T05:03:38,599 adding 'galaxy/tools/bundled/filters/cutWrapper.pl' 2024-02-22T05:03:38,600 adding 'galaxy/tools/bundled/filters/cutWrapper.xml' 2024-02-22T05:03:38,601 adding 'galaxy/tools/bundled/filters/fileGrep.xml' 2024-02-22T05:03:38,603 adding 'galaxy/tools/bundled/filters/fixedValueColumn.pl' 2024-02-22T05:03:38,604 adding 'galaxy/tools/bundled/filters/fixedValueColumn.xml' 2024-02-22T05:03:38,605 adding 'galaxy/tools/bundled/filters/gff2bed.xml' 2024-02-22T05:03:38,607 adding 'galaxy/tools/bundled/filters/gff_to_bed_converter.py' 2024-02-22T05:03:38,608 adding 'galaxy/tools/bundled/filters/grep.py' 2024-02-22T05:03:38,610 adding 'galaxy/tools/bundled/filters/grep.xml' 2024-02-22T05:03:38,611 adding 'galaxy/tools/bundled/filters/grep_1.0.1.xml' 2024-02-22T05:03:38,613 adding 'galaxy/tools/bundled/filters/gtf2bedgraph.xml' 2024-02-22T05:03:38,614 adding 'galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py' 2024-02-22T05:03:38,615 adding 'galaxy/tools/bundled/filters/headWrapper.xml' 2024-02-22T05:03:38,617 adding 'galaxy/tools/bundled/filters/join.py' 2024-02-22T05:03:38,619 adding 'galaxy/tools/bundled/filters/joinWrapper.py' 2024-02-22T05:03:38,620 adding 'galaxy/tools/bundled/filters/joiner.xml' 2024-02-22T05:03:38,622 adding 'galaxy/tools/bundled/filters/joiner2.xml' 2024-02-22T05:03:38,623 adding 'galaxy/tools/bundled/filters/lav_to_bed.py' 2024-02-22T05:03:38,624 adding 'galaxy/tools/bundled/filters/lav_to_bed.xml' 2024-02-22T05:03:38,626 adding 'galaxy/tools/bundled/filters/lav_to_bed_code.py' 2024-02-22T05:03:38,627 adding 'galaxy/tools/bundled/filters/mergeCols.py' 2024-02-22T05:03:38,629 adding 'galaxy/tools/bundled/filters/mergeCols.xml' 2024-02-22T05:03:38,630 adding 'galaxy/tools/bundled/filters/pasteWrapper.pl' 2024-02-22T05:03:38,631 adding 'galaxy/tools/bundled/filters/pasteWrapper.xml' 2024-02-22T05:03:38,633 adding 'galaxy/tools/bundled/filters/random_lines_two_pass.py' 2024-02-22T05:03:38,634 adding 'galaxy/tools/bundled/filters/randomlines.py' 2024-02-22T05:03:38,635 adding 'galaxy/tools/bundled/filters/randomlines.xml' 2024-02-22T05:03:38,637 adding 'galaxy/tools/bundled/filters/remove_beginning.pl' 2024-02-22T05:03:38,638 adding 'galaxy/tools/bundled/filters/remove_beginning.xml' 2024-02-22T05:03:38,640 adding 'galaxy/tools/bundled/filters/secure_hash_message_digest.py' 2024-02-22T05:03:38,641 adding 'galaxy/tools/bundled/filters/secure_hash_message_digest.xml' 2024-02-22T05:03:38,647 adding 'galaxy/tools/bundled/filters/sff_extract.py' 2024-02-22T05:03:38,648 adding 'galaxy/tools/bundled/filters/sff_extractor.xml' 2024-02-22T05:03:38,650 adding 'galaxy/tools/bundled/filters/sorter.py' 2024-02-22T05:03:38,651 adding 'galaxy/tools/bundled/filters/sorter.xml' 2024-02-22T05:03:38,653 adding 'galaxy/tools/bundled/filters/tailWrapper.xml' 2024-02-22T05:03:38,654 adding 'galaxy/tools/bundled/filters/trimmer.py' 2024-02-22T05:03:38,656 adding 'galaxy/tools/bundled/filters/trimmer.xml' 2024-02-22T05:03:38,657 adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.py' 2024-02-22T05:03:38,658 adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.xml' 2024-02-22T05:03:38,660 adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.py' 2024-02-22T05:03:38,661 adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.xml' 2024-02-22T05:03:38,663 adding 'galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.py' 2024-02-22T05:03:38,664 adding 'galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.xml' 2024-02-22T05:03:38,665 adding 'galaxy/tools/bundled/filters/uniq.py' 2024-02-22T05:03:38,666 adding 'galaxy/tools/bundled/filters/uniq.xml' 2024-02-22T05:03:38,668 adding 'galaxy/tools/bundled/filters/wc_gnu.xml' 2024-02-22T05:03:38,669 adding 'galaxy/tools/bundled/filters/wig_to_bigwig.xml' 2024-02-22T05:03:38,670 adding 'galaxy/tools/bundled/filters/wiggle_to_simple.py' 2024-02-22T05:03:38,672 adding 'galaxy/tools/bundled/filters/wiggle_to_simple.xml' 2024-02-22T05:03:38,673 adding 'galaxy/tools/bundled/filters/gff/__init__.py' 2024-02-22T05:03:38,674 adding 'galaxy/tools/bundled/filters/gff/extract_GFF_Features.py' 2024-02-22T05:03:38,676 adding 'galaxy/tools/bundled/filters/gff/extract_GFF_Features.xml' 2024-02-22T05:03:38,678 adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.py' 2024-02-22T05:03:38,679 adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.xml' 2024-02-22T05:03:38,681 adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.py' 2024-02-22T05:03:38,682 adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.xml' 2024-02-22T05:03:38,683 adding 'galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.py' 2024-02-22T05:03:38,684 adding 'galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.xml' 2024-02-22T05:03:38,687 adding 'galaxy/tools/bundled/interactive/default_notebook.ipynb' 2024-02-22T05:03:38,688 adding 'galaxy/tools/bundled/interactive/interactivetool_askomics.xml' 2024-02-22T05:03:38,689 adding 'galaxy/tools/bundled/interactive/interactivetool_bam_iobio.xml' 2024-02-22T05:03:38,691 adding 'galaxy/tools/bundled/interactive/interactivetool_cellxgene_0.16.2.xml' 2024-02-22T05:03:38,692 adding 'galaxy/tools/bundled/interactive/interactivetool_cellxgene_1.1.1.xml' 2024-02-22T05:03:38,694 adding 'galaxy/tools/bundled/interactive/interactivetool_climate_notebook.xml' 2024-02-22T05:03:38,695 adding 'galaxy/tools/bundled/interactive/interactivetool_ethercalc.xml' 2024-02-22T05:03:38,697 adding 'galaxy/tools/bundled/interactive/interactivetool_geoexplorer.xml' 2024-02-22T05:03:38,698 adding 'galaxy/tools/bundled/interactive/interactivetool_guacamole_desktop.xml' 2024-02-22T05:03:38,699 adding 'galaxy/tools/bundled/interactive/interactivetool_hicbrowser.xml' 2024-02-22T05:03:38,701 adding 'galaxy/tools/bundled/interactive/interactivetool_higlass.xml' 2024-02-22T05:03:38,703 adding 'galaxy/tools/bundled/interactive/interactivetool_isee.xml' 2024-02-22T05:03:38,704 adding 'galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook.xml' 2024-02-22T05:03:38,706 adding 'galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.0.xml' 2024-02-22T05:03:38,708 adding 'galaxy/tools/bundled/interactive/interactivetool_metashark.xml' 2024-02-22T05:03:38,709 adding 'galaxy/tools/bundled/interactive/interactivetool_mgnify_notebook.xml' 2024-02-22T05:03:38,711 adding 'galaxy/tools/bundled/interactive/interactivetool_ml_jupyter_notebook.xml' 2024-02-22T05:03:38,713 adding 'galaxy/tools/bundled/interactive/interactivetool_neo4j.xml' 2024-02-22T05:03:38,714 adding 'galaxy/tools/bundled/interactive/interactivetool_openrefine.xml' 2024-02-22T05:03:38,716 adding 'galaxy/tools/bundled/interactive/interactivetool_pangeo_notebook.xml' 2024-02-22T05:03:38,717 adding 'galaxy/tools/bundled/interactive/interactivetool_panoply.xml' 2024-02-22T05:03:38,718 adding 'galaxy/tools/bundled/interactive/interactivetool_paraview.xml' 2024-02-22T05:03:38,720 adding 'galaxy/tools/bundled/interactive/interactivetool_pavian.xml' 2024-02-22T05:03:38,721 adding 'galaxy/tools/bundled/interactive/interactivetool_phinch.xml' 2024-02-22T05:03:38,722 adding 'galaxy/tools/bundled/interactive/interactivetool_pyiron.xml' 2024-02-22T05:03:38,724 adding 'galaxy/tools/bundled/interactive/interactivetool_radiant.xml' 2024-02-22T05:03:38,725 adding 'galaxy/tools/bundled/interactive/interactivetool_rstudio.xml' 2024-02-22T05:03:38,727 adding 'galaxy/tools/bundled/interactive/interactivetool_simtext_app.xml' 2024-02-22T05:03:38,728 adding 'galaxy/tools/bundled/interactive/interactivetool_vcf_iobio.xml' 2024-02-22T05:03:38,729 adding 'galaxy/tools/bundled/interactive/interactivetool_vrm_editor.xml' 2024-02-22T05:03:38,730 adding 'galaxy/tools/bundled/interactive/interactivetool_wallace.xml' 2024-02-22T05:03:38,731 adding 'galaxy/tools/bundled/interactive/interactivetool_wilson.xml' 2024-02-22T05:03:38,734 adding 'galaxy/tools/bundled/interactive/simtext_app.R' 2024-02-22T05:03:38,736 adding 'galaxy/tools/bundled/maf/__init__.py' 2024-02-22T05:03:38,738 adding 'galaxy/tools/bundled/maf/genebed_maf_to_fasta.xml' 2024-02-22T05:03:38,739 adding 'galaxy/tools/bundled/maf/interval2maf.py' 2024-02-22T05:03:38,741 adding 'galaxy/tools/bundled/maf/interval2maf.xml' 2024-02-22T05:03:38,742 adding 'galaxy/tools/bundled/maf/interval2maf_pairwise.xml' 2024-02-22T05:03:38,744 adding 'galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.py' 2024-02-22T05:03:38,746 adding 'galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.xml' 2024-02-22T05:03:38,747 adding 'galaxy/tools/bundled/maf/macros.xml' 2024-02-22T05:03:38,748 adding 'galaxy/tools/bundled/maf/maf_by_block_number.py' 2024-02-22T05:03:38,749 adding 'galaxy/tools/bundled/maf/maf_by_block_number.xml' 2024-02-22T05:03:38,750 adding 'galaxy/tools/bundled/maf/maf_filter.py' 2024-02-22T05:03:38,752 adding 'galaxy/tools/bundled/maf/maf_filter.xml' 2024-02-22T05:03:38,753 adding 'galaxy/tools/bundled/maf/maf_limit_size.py' 2024-02-22T05:03:38,754 adding 'galaxy/tools/bundled/maf/maf_limit_size.xml' 2024-02-22T05:03:38,756 adding 'galaxy/tools/bundled/maf/maf_limit_to_species.py' 2024-02-22T05:03:38,757 adding 'galaxy/tools/bundled/maf/maf_limit_to_species.xml' 2024-02-22T05:03:38,758 adding 'galaxy/tools/bundled/maf/maf_reverse_complement.py' 2024-02-22T05:03:38,759 adding 'galaxy/tools/bundled/maf/maf_reverse_complement.xml' 2024-02-22T05:03:38,761 adding 'galaxy/tools/bundled/maf/maf_split_by_species.py' 2024-02-22T05:03:38,762 adding 'galaxy/tools/bundled/maf/maf_split_by_species.xml' 2024-02-22T05:03:38,764 adding 'galaxy/tools/bundled/maf/maf_stats.py' 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'tool_shed_client/__init__.py' 2024-02-22T05:03:39,121 adding 'tool_shed_client/py.typed' 2024-02-22T05:03:39,122 adding 'tool_shed_client/trs_util.py' 2024-02-22T05:03:39,124 adding 'tool_shed_client/schema/__init__.py' 2024-02-22T05:03:39,126 adding 'tool_shed_client/schema/trs.py' 2024-02-22T05:03:39,127 adding 'tool_shed_client/schema/trs_service_info.py' 2024-02-22T05:03:39,129 adding 'galaxy_app-23.2.1.dist-info/LICENSE' 2024-02-22T05:03:39,134 adding 'galaxy_app-23.2.1.dist-info/METADATA' 2024-02-22T05:03:39,135 adding 'galaxy_app-23.2.1.dist-info/WHEEL' 2024-02-22T05:03:39,136 adding 'galaxy_app-23.2.1.dist-info/entry_points.txt' 2024-02-22T05:03:39,137 adding 'galaxy_app-23.2.1.dist-info/top_level.txt' 2024-02-22T05:03:39,147 adding 'galaxy_app-23.2.1.dist-info/RECORD' 2024-02-22T05:03:39,172 removing build/bdist.linux-armv7l/wheel 2024-02-22T05:03:39,408 Building wheel for galaxy-app (pyproject.toml): finished with status 'done' 2024-02-22T05:03:39,442 Created wheel for galaxy-app: filename=galaxy_app-23.2.1-py3-none-any.whl size=1431793 sha256=e37a8c0551dded98be57102c74e99152b15aa0369a4b28287c95e0b0e1b0c7f9 2024-02-22T05:03:39,443 Stored in directory: /tmp/pip-ephem-wheel-cache-g34v7kc3/wheels/53/bf/5f/f434e1d7ff23d49b7fcf3030bbce8e4779e64bcf28b1a7f2e8 2024-02-22T05:03:39,479 Successfully built galaxy-app 2024-02-22T05:03:39,516 Removed build tracker: '/tmp/pip-build-tracker-v3pg13tr'