2024-02-22T15:52:59,062 Created temporary directory: /tmp/pip-build-tracker-peq0wz07 2024-02-22T15:52:59,063 Initialized build tracking at /tmp/pip-build-tracker-peq0wz07 2024-02-22T15:52:59,064 Created build tracker: /tmp/pip-build-tracker-peq0wz07 2024-02-22T15:52:59,064 Entered build tracker: /tmp/pip-build-tracker-peq0wz07 2024-02-22T15:52:59,065 Created temporary directory: /tmp/pip-wheel-m2wsbgjt 2024-02-22T15:52:59,068 Created temporary directory: /tmp/pip-ephem-wheel-cache-ecqagmh4 2024-02-22T15:52:59,090 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-02-22T15:52:59,093 2 location(s) to search for versions of seregen: 2024-02-22T15:52:59,093 * https://pypi.org/simple/seregen/ 2024-02-22T15:52:59,093 * https://www.piwheels.org/simple/seregen/ 2024-02-22T15:52:59,094 Fetching project page and analyzing links: https://pypi.org/simple/seregen/ 2024-02-22T15:52:59,095 Getting page https://pypi.org/simple/seregen/ 2024-02-22T15:52:59,096 Found index url https://pypi.org/simple/ 2024-02-22T15:52:59,235 Fetched page https://pypi.org/simple/seregen/ as application/vnd.pypi.simple.v1+json 2024-02-22T15:52:59,237 Skipping link: No binaries permitted for seregen: https://files.pythonhosted.org/packages/45/05/008c77127f78c6a5cfff48774826d9b86ceaea2e1f91d4a3e50f3fda7c5c/SeREGen-0.0.0-py3-none-any.whl (from https://pypi.org/simple/seregen/) (requires-python:>=3.10) 2024-02-22T15:52:59,238 Found link https://files.pythonhosted.org/packages/3d/8f/dcb4b149bb01ce860f2c24ec9f3cec7598fcb520a10e26358b6fccc3fe01/SeREGen-0.0.0.tar.gz (from https://pypi.org/simple/seregen/) (requires-python:>=3.10), version: 0.0.0 2024-02-22T15:52:59,239 Skipping link: No binaries permitted for seregen: https://files.pythonhosted.org/packages/b6/08/160366eb947fbb9fa08cc0bf0b7f5bbf1750d40fc828c3f9979e56722824/SeREGen-0.0.1-py3-none-any.whl (from https://pypi.org/simple/seregen/) (requires-python:>=3.10) 2024-02-22T15:52:59,240 Found link https://files.pythonhosted.org/packages/29/55/67322f0435ec36a3778c590a4fc6d2a973e6b3793d2792c0e2aaba191f35/SeREGen-0.0.1.tar.gz (from https://pypi.org/simple/seregen/) (requires-python:>=3.10), version: 0.0.1 2024-02-22T15:52:59,241 Skipping link: No binaries permitted for seregen: https://files.pythonhosted.org/packages/40/2d/a4cb509b888fb3d18c752204896aa59889712488babb6f16469aced3fe98/SeREGen-0.0.2-py3-none-any.whl (from https://pypi.org/simple/seregen/) (requires-python:>=3.10) 2024-02-22T15:52:59,242 Found link https://files.pythonhosted.org/packages/77/5f/ff0bc6b566827b711c3fe0b3047faa7e86ff9b7d814bddfc35e1f2c112e6/SeREGen-0.0.2.tar.gz (from https://pypi.org/simple/seregen/) (requires-python:>=3.10), version: 0.0.2 2024-02-22T15:52:59,243 Fetching project page and analyzing links: https://www.piwheels.org/simple/seregen/ 2024-02-22T15:52:59,243 Getting page https://www.piwheels.org/simple/seregen/ 2024-02-22T15:52:59,245 Found index url https://www.piwheels.org/simple/ 2024-02-22T15:52:59,395 Fetched page https://www.piwheels.org/simple/seregen/ as text/html 2024-02-22T15:52:59,396 Skipping link: not a file: https://www.piwheels.org/simple/seregen/ 2024-02-22T15:52:59,397 Skipping link: not a file: https://pypi.org/simple/seregen/ 2024-02-22T15:52:59,415 Given no hashes to check 1 links for project 'seregen': discarding no candidates 2024-02-22T15:52:59,433 Collecting seregen==0.0.1 2024-02-22T15:52:59,435 Created temporary directory: /tmp/pip-unpack-f6zye5fq 2024-02-22T15:52:59,650 Downloading SeREGen-0.0.1.tar.gz (39 kB) 2024-02-22T15:52:59,724 Added seregen==0.0.1 from https://files.pythonhosted.org/packages/29/55/67322f0435ec36a3778c590a4fc6d2a973e6b3793d2792c0e2aaba191f35/SeREGen-0.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-peq0wz07' 2024-02-22T15:52:59,728 Created temporary directory: /tmp/pip-build-env-9qf1w4sq 2024-02-22T15:52:59,732 Installing build dependencies: started 2024-02-22T15:52:59,734 Running command pip subprocess to install build dependencies 2024-02-22T15:53:00,866 Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-02-22T15:53:01,379 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-02-22T15:53:02,797 Collecting setuptools>=61.0 2024-02-22T15:53:02,810 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.1.0-py3-none-any.whl (819 kB) 2024-02-22T15:53:05,385 Installing collected packages: setuptools 2024-02-22T15:53:07,608 Successfully installed setuptools-69.1.0 2024-02-22T15:53:07,882 [notice] A new release of pip is available: 23.3.1 -> 24.0 2024-02-22T15:53:07,883 [notice] To update, run: python3 -m pip install --upgrade pip 2024-02-22T15:53:08,150 Installing build dependencies: finished with status 'done' 2024-02-22T15:53:08,153 Getting requirements to build wheel: started 2024-02-22T15:53:08,154 Running command Getting requirements to build wheel 2024-02-22T15:53:08,655 /tmp/pip-build-env-9qf1w4sq/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:76: _MissingDynamic: `dependencies` defined outside of `pyproject.toml` is ignored. 2024-02-22T15:53:08,655 !! 2024-02-22T15:53:08,656 ******************************************************************************** 2024-02-22T15:53:08,657 The following seems to be defined outside of `pyproject.toml`: 2024-02-22T15:53:08,658 `dependencies = ['numpy>=1.21.2', 'tqdm>=4.64.2', 'py_stringmatching>=0.4.5', 'tensorflow>=2.9.1', 'scikit-learn>=1.3.0', 'matplotlib>=3.4.3', 'biopython>=1.79', 'pandas>=1.3.3', 'scipy>=1.10.1', 'rdkit>=2023.3.3']` 2024-02-22T15:53:08,659 According to the spec (see the link below), however, setuptools CANNOT 2024-02-22T15:53:08,659 consider this value unless `dependencies` is listed as `dynamic`. 2024-02-22T15:53:08,660 https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table 2024-02-22T15:53:08,661 To prevent this problem, you can list `dependencies` under `dynamic` or alternatively 2024-02-22T15:53:08,662 remove the `[project]` table from your file and rely entirely on other means of 2024-02-22T15:53:08,662 configuration. 2024-02-22T15:53:08,663 ******************************************************************************** 2024-02-22T15:53:08,664 !! 2024-02-22T15:53:08,665 _handle_missing_dynamic(dist, project_table) 2024-02-22T15:53:08,665 /tmp/pip-build-env-9qf1w4sq/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:83: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2024-02-22T15:53:08,666 corresp(dist, value, root_dir) 2024-02-22T15:53:08,901 running egg_info 2024-02-22T15:53:08,905 writing src/SeREGen.egg-info/PKG-INFO 2024-02-22T15:53:08,908 writing dependency_links to src/SeREGen.egg-info/dependency_links.txt 2024-02-22T15:53:08,910 writing top-level names to src/SeREGen.egg-info/top_level.txt 2024-02-22T15:53:08,923 reading manifest file 'src/SeREGen.egg-info/SOURCES.txt' 2024-02-22T15:53:08,926 adding license file 'LICENSE' 2024-02-22T15:53:08,928 writing manifest file 'src/SeREGen.egg-info/SOURCES.txt' 2024-02-22T15:53:09,038 Getting requirements to build wheel: finished with status 'done' 2024-02-22T15:53:09,046 Installing backend dependencies: started 2024-02-22T15:53:09,047 Running command pip subprocess to install backend dependencies 2024-02-22T15:53:10,177 Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-02-22T15:53:10,690 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-02-22T15:53:11,158 Collecting wheel 2024-02-22T15:53:11,172 Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB) 2024-02-22T15:53:13,386 Installing collected packages: wheel 2024-02-22T15:53:13,603 Creating /tmp/pip-build-env-9qf1w4sq/normal/local/bin 2024-02-22T15:53:13,606 changing mode of /tmp/pip-build-env-9qf1w4sq/normal/local/bin/wheel to 755 2024-02-22T15:53:13,617 Successfully installed wheel-0.42.0 2024-02-22T15:53:13,887 [notice] A new release of pip is available: 23.3.1 -> 24.0 2024-02-22T15:53:13,888 [notice] To update, run: python3 -m pip install --upgrade pip 2024-02-22T15:53:14,116 Installing backend dependencies: finished with status 'done' 2024-02-22T15:53:14,118 Created temporary directory: /tmp/pip-modern-metadata-u833o86g 2024-02-22T15:53:14,120 Preparing metadata (pyproject.toml): started 2024-02-22T15:53:14,121 Running command Preparing metadata (pyproject.toml) 2024-02-22T15:53:14,607 /tmp/pip-build-env-9qf1w4sq/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:76: _MissingDynamic: `dependencies` defined outside of `pyproject.toml` is ignored. 2024-02-22T15:53:14,608 !! 2024-02-22T15:53:14,609 ******************************************************************************** 2024-02-22T15:53:14,609 The following seems to be defined outside of `pyproject.toml`: 2024-02-22T15:53:14,610 `dependencies = ['numpy>=1.21.2', 'tqdm>=4.64.2', 'py_stringmatching>=0.4.5', 'tensorflow>=2.9.1', 'scikit-learn>=1.3.0', 'matplotlib>=3.4.3', 'biopython>=1.79', 'pandas>=1.3.3', 'scipy>=1.10.1', 'rdkit>=2023.3.3']` 2024-02-22T15:53:14,611 According to the spec (see the link below), however, setuptools CANNOT 2024-02-22T15:53:14,611 consider this value unless `dependencies` is listed as `dynamic`. 2024-02-22T15:53:14,612 https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table 2024-02-22T15:53:14,614 To prevent this problem, you can list `dependencies` under `dynamic` or alternatively 2024-02-22T15:53:14,614 remove the `[project]` table from your file and rely entirely on other means of 2024-02-22T15:53:14,615 configuration. 2024-02-22T15:53:14,615 ******************************************************************************** 2024-02-22T15:53:14,616 !! 2024-02-22T15:53:14,616 _handle_missing_dynamic(dist, project_table) 2024-02-22T15:53:14,617 /tmp/pip-build-env-9qf1w4sq/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:83: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2024-02-22T15:53:14,618 corresp(dist, value, root_dir) 2024-02-22T15:53:14,908 running dist_info 2024-02-22T15:53:14,914 creating /tmp/pip-modern-metadata-u833o86g/SeREGen.egg-info 2024-02-22T15:53:14,917 writing /tmp/pip-modern-metadata-u833o86g/SeREGen.egg-info/PKG-INFO 2024-02-22T15:53:14,921 writing dependency_links to /tmp/pip-modern-metadata-u833o86g/SeREGen.egg-info/dependency_links.txt 2024-02-22T15:53:14,923 writing top-level names to /tmp/pip-modern-metadata-u833o86g/SeREGen.egg-info/top_level.txt 2024-02-22T15:53:14,924 writing manifest file '/tmp/pip-modern-metadata-u833o86g/SeREGen.egg-info/SOURCES.txt' 2024-02-22T15:53:14,938 reading manifest file '/tmp/pip-modern-metadata-u833o86g/SeREGen.egg-info/SOURCES.txt' 2024-02-22T15:53:14,940 adding license file 'LICENSE' 2024-02-22T15:53:14,942 writing manifest file '/tmp/pip-modern-metadata-u833o86g/SeREGen.egg-info/SOURCES.txt' 2024-02-22T15:53:14,943 creating '/tmp/pip-modern-metadata-u833o86g/SeREGen-0.0.1.dist-info' 2024-02-22T15:53:15,084 Preparing metadata (pyproject.toml): finished with status 'done' 2024-02-22T15:53:15,089 Source in /tmp/pip-wheel-m2wsbgjt/seregen_6e4b0d08602a41b18cd1120e50db3e76 has version 0.0.1, which satisfies requirement seregen==0.0.1 from https://files.pythonhosted.org/packages/29/55/67322f0435ec36a3778c590a4fc6d2a973e6b3793d2792c0e2aaba191f35/SeREGen-0.0.1.tar.gz 2024-02-22T15:53:15,090 Removed seregen==0.0.1 from https://files.pythonhosted.org/packages/29/55/67322f0435ec36a3778c590a4fc6d2a973e6b3793d2792c0e2aaba191f35/SeREGen-0.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-peq0wz07' 2024-02-22T15:53:15,095 Created temporary directory: /tmp/pip-unpack-2yf2jdu6 2024-02-22T15:53:15,096 Created temporary directory: /tmp/pip-unpack-9rvol_pf 2024-02-22T15:53:15,099 Building wheels for collected packages: seregen 2024-02-22T15:53:15,103 Created temporary directory: /tmp/pip-wheel-ydx8wt_6 2024-02-22T15:53:15,103 Destination directory: /tmp/pip-wheel-ydx8wt_6 2024-02-22T15:53:15,105 Building wheel for seregen (pyproject.toml): started 2024-02-22T15:53:15,106 Running command Building wheel for seregen (pyproject.toml) 2024-02-22T15:53:15,568 /tmp/pip-build-env-9qf1w4sq/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:76: _MissingDynamic: `dependencies` defined outside of `pyproject.toml` is ignored. 2024-02-22T15:53:15,568 !! 2024-02-22T15:53:15,570 ******************************************************************************** 2024-02-22T15:53:15,570 The following seems to be defined outside of `pyproject.toml`: 2024-02-22T15:53:15,571 `dependencies = ['numpy>=1.21.2', 'tqdm>=4.64.2', 'py_stringmatching>=0.4.5', 'tensorflow>=2.9.1', 'scikit-learn>=1.3.0', 'matplotlib>=3.4.3', 'biopython>=1.79', 'pandas>=1.3.3', 'scipy>=1.10.1', 'rdkit>=2023.3.3']` 2024-02-22T15:53:15,572 According to the spec (see the link below), however, setuptools CANNOT 2024-02-22T15:53:15,572 consider this value unless `dependencies` is listed as `dynamic`. 2024-02-22T15:53:15,573 https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table 2024-02-22T15:53:15,574 To prevent this problem, you can list `dependencies` under `dynamic` or alternatively 2024-02-22T15:53:15,575 remove the `[project]` table from your file and rely entirely on other means of 2024-02-22T15:53:15,575 configuration. 2024-02-22T15:53:15,576 ******************************************************************************** 2024-02-22T15:53:15,577 !! 2024-02-22T15:53:15,578 _handle_missing_dynamic(dist, project_table) 2024-02-22T15:53:15,578 /tmp/pip-build-env-9qf1w4sq/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:83: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2024-02-22T15:53:15,579 corresp(dist, value, root_dir) 2024-02-22T15:53:15,839 running bdist_wheel 2024-02-22T15:53:15,854 running build 2024-02-22T15:53:15,855 running build_py 2024-02-22T15:53:15,859 creating build 2024-02-22T15:53:15,859 creating build/lib 2024-02-22T15:53:15,860 creating build/lib/SeREGen 2024-02-22T15:53:15,861 copying src/SeREGen/dataset_builder.py -> build/lib/SeREGen 2024-02-22T15:53:15,864 copying src/SeREGen/encoders.py -> build/lib/SeREGen 2024-02-22T15:53:15,866 copying src/SeREGen/visualize.py -> build/lib/SeREGen 2024-02-22T15:53:15,868 copying src/SeREGen/pipeline.py -> build/lib/SeREGen 2024-02-22T15:53:15,870 copying src/SeREGen/kmers.py -> build/lib/SeREGen 2024-02-22T15:53:15,872 copying src/SeREGen/exceptions.py -> build/lib/SeREGen 2024-02-22T15:53:15,874 copying src/SeREGen/comparative_encoder.py -> build/lib/SeREGen 2024-02-22T15:53:15,877 copying src/SeREGen/_output_mgmt.py -> build/lib/SeREGen 2024-02-22T15:53:15,878 copying src/SeREGen/compression.py -> build/lib/SeREGen 2024-02-22T15:53:15,881 copying src/SeREGen/__init__.py -> build/lib/SeREGen 2024-02-22T15:53:15,882 copying src/SeREGen/distance.py -> build/lib/SeREGen 2024-02-22T15:53:15,884 running egg_info 2024-02-22T15:53:15,888 writing src/SeREGen.egg-info/PKG-INFO 2024-02-22T15:53:15,891 writing dependency_links to src/SeREGen.egg-info/dependency_links.txt 2024-02-22T15:53:15,892 writing top-level names to src/SeREGen.egg-info/top_level.txt 2024-02-22T15:53:15,900 reading manifest file 'src/SeREGen.egg-info/SOURCES.txt' 2024-02-22T15:53:15,901 adding license file 'LICENSE' 2024-02-22T15:53:15,903 writing manifest file 'src/SeREGen.egg-info/SOURCES.txt' 2024-02-22T15:53:15,912 installing to build/bdist.linux-armv7l/wheel 2024-02-22T15:53:15,913 running install 2024-02-22T15:53:15,936 running install_lib 2024-02-22T15:53:15,940 creating build/bdist.linux-armv7l 2024-02-22T15:53:15,941 creating build/bdist.linux-armv7l/wheel 2024-02-22T15:53:15,942 creating build/bdist.linux-armv7l/wheel/SeREGen 2024-02-22T15:53:15,943 copying build/lib/SeREGen/dataset_builder.py -> build/bdist.linux-armv7l/wheel/SeREGen 2024-02-22T15:53:15,946 copying build/lib/SeREGen/encoders.py -> build/bdist.linux-armv7l/wheel/SeREGen 2024-02-22T15:53:15,948 copying build/lib/SeREGen/visualize.py -> build/bdist.linux-armv7l/wheel/SeREGen 2024-02-22T15:53:15,949 copying build/lib/SeREGen/pipeline.py -> build/bdist.linux-armv7l/wheel/SeREGen 2024-02-22T15:53:15,952 copying build/lib/SeREGen/kmers.py -> build/bdist.linux-armv7l/wheel/SeREGen 2024-02-22T15:53:15,954 copying build/lib/SeREGen/exceptions.py -> build/bdist.linux-armv7l/wheel/SeREGen 2024-02-22T15:53:15,956 copying build/lib/SeREGen/comparative_encoder.py -> build/bdist.linux-armv7l/wheel/SeREGen 2024-02-22T15:53:15,958 copying build/lib/SeREGen/_output_mgmt.py -> build/bdist.linux-armv7l/wheel/SeREGen 2024-02-22T15:53:15,959 copying build/lib/SeREGen/compression.py -> build/bdist.linux-armv7l/wheel/SeREGen 2024-02-22T15:53:15,962 copying build/lib/SeREGen/__init__.py -> build/bdist.linux-armv7l/wheel/SeREGen 2024-02-22T15:53:15,963 copying build/lib/SeREGen/distance.py -> build/bdist.linux-armv7l/wheel/SeREGen 2024-02-22T15:53:15,965 running install_egg_info 2024-02-22T15:53:15,969 Copying src/SeREGen.egg-info to build/bdist.linux-armv7l/wheel/SeREGen-0.0.1-py3.11.egg-info 2024-02-22T15:53:15,976 running install_scripts 2024-02-22T15:53:15,989 creating build/bdist.linux-armv7l/wheel/SeREGen-0.0.1.dist-info/WHEEL 2024-02-22T15:53:15,991 creating '/tmp/pip-wheel-ydx8wt_6/.tmp-ckufxb52/SeREGen-0.0.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-02-22T15:53:15,993 adding 'SeREGen/__init__.py' 2024-02-22T15:53:15,994 adding 'SeREGen/_output_mgmt.py' 2024-02-22T15:53:15,997 adding 'SeREGen/comparative_encoder.py' 2024-02-22T15:53:15,999 adding 'SeREGen/compression.py' 2024-02-22T15:53:16,001 adding 'SeREGen/dataset_builder.py' 2024-02-22T15:53:16,003 adding 'SeREGen/distance.py' 2024-02-22T15:53:16,005 adding 'SeREGen/encoders.py' 2024-02-22T15:53:16,006 adding 'SeREGen/exceptions.py' 2024-02-22T15:53:16,008 adding 'SeREGen/kmers.py' 2024-02-22T15:53:16,011 adding 'SeREGen/pipeline.py' 2024-02-22T15:53:16,012 adding 'SeREGen/visualize.py' 2024-02-22T15:53:16,019 adding 'SeREGen-0.0.1.dist-info/LICENSE' 2024-02-22T15:53:16,021 adding 'SeREGen-0.0.1.dist-info/METADATA' 2024-02-22T15:53:16,022 adding 'SeREGen-0.0.1.dist-info/WHEEL' 2024-02-22T15:53:16,023 adding 'SeREGen-0.0.1.dist-info/top_level.txt' 2024-02-22T15:53:16,024 adding 'SeREGen-0.0.1.dist-info/RECORD' 2024-02-22T15:53:16,025 removing build/bdist.linux-armv7l/wheel 2024-02-22T15:53:16,147 Building wheel for seregen (pyproject.toml): finished with status 'done' 2024-02-22T15:53:16,152 Created wheel for seregen: filename=SeREGen-0.0.1-py3-none-any.whl size=41938 sha256=bb4a0d42849333786af23ff747720068831b70276261f192d062b27647f9472e 2024-02-22T15:53:16,154 Stored in directory: /tmp/pip-ephem-wheel-cache-ecqagmh4/wheels/91/28/81/329aa6a1c23bd248f7db6289d53706948100966f6646c74e1d 2024-02-22T15:53:16,164 Successfully built seregen 2024-02-22T15:53:16,168 Removed build tracker: '/tmp/pip-build-tracker-peq0wz07'